Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031640.t1 | RHN61826.1 | 95.3 | 192 | 8 | 1 | 1 | 191 | 1 | 192 | 1.20E-89 | 339.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031640.t1 | Q9LNB9 | 66.3 | 92 | 31 | 0 | 4 | 95 | 14 | 105 | 7.2e-32 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031640.t1 | A0A396I891 | 95.3 | 192 | 8 | 1 | 1 | 191 | 1 | 192 | 8.3e-90 | 339.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031640.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031640.t1 | MTR_4g088035 | 47.191 | 89 | 47 | 0 | 14 | 102 | 6 | 94 | 1.46e-26 | 102 |
| MS.gene031640.t1 | MTR_3g073690 | 41.346 | 104 | 61 | 0 | 15 | 118 | 10 | 113 | 1.31e-23 | 93.2 |
| MS.gene031640.t1 | MTR_2g093310 | 41.935 | 93 | 54 | 0 | 15 | 107 | 34 | 126 | 3.47e-23 | 92.0 |
| MS.gene031640.t1 | MTR_2g100020 | 35.461 | 141 | 89 | 1 | 10 | 148 | 15 | 155 | 3.81e-23 | 93.6 |
| MS.gene031640.t1 | MTR_3g031660 | 42.105 | 95 | 55 | 0 | 15 | 109 | 8 | 102 | 7.70e-23 | 90.5 |
| MS.gene031640.t1 | MTR_1g095850 | 34.884 | 129 | 77 | 1 | 15 | 136 | 73 | 201 | 2.19e-22 | 90.9 |
| MS.gene031640.t1 | MTR_4g107450 | 41.837 | 98 | 57 | 0 | 10 | 107 | 6 | 103 | 2.21e-22 | 92.0 |
| MS.gene031640.t1 | MTR_5g083230 | 35.714 | 126 | 76 | 2 | 10 | 134 | 2 | 123 | 3.70e-22 | 88.6 |
| MS.gene031640.t1 | MTR_8g017090 | 41.667 | 108 | 52 | 2 | 13 | 111 | 11 | 116 | 4.13e-22 | 91.3 |
| MS.gene031640.t1 | MTR_4g105170 | 43.011 | 93 | 53 | 0 | 15 | 107 | 12 | 104 | 6.96e-22 | 88.6 |
| MS.gene031640.t1 | MTR_7g033800 | 41.935 | 93 | 54 | 0 | 15 | 107 | 12 | 104 | 1.43e-21 | 87.0 |
| MS.gene031640.t1 | MTR_3g077240 | 38.835 | 103 | 63 | 0 | 5 | 107 | 1 | 103 | 1.65e-21 | 87.4 |
| MS.gene031640.t1 | MTR_6g011250 | 45.679 | 81 | 43 | 1 | 12 | 91 | 7 | 87 | 1.67e-21 | 87.4 |
| MS.gene031640.t1 | MTR_4g083680 | 41.379 | 87 | 51 | 0 | 10 | 96 | 11 | 97 | 2.04e-21 | 86.7 |
| MS.gene031640.t1 | MTR_3g071590 | 41.053 | 95 | 52 | 1 | 15 | 109 | 9 | 99 | 2.65e-21 | 86.3 |
| MS.gene031640.t1 | MTR_2g068760 | 37.838 | 111 | 59 | 2 | 10 | 120 | 9 | 109 | 6.07e-21 | 85.1 |
| MS.gene031640.t1 | MTR_6g011200 | 39.806 | 103 | 58 | 2 | 12 | 110 | 7 | 109 | 6.09e-21 | 87.4 |
| MS.gene031640.t1 | MTR_5g083960 | 35.185 | 108 | 68 | 1 | 15 | 120 | 40 | 147 | 8.98e-21 | 85.5 |
| MS.gene031640.t1 | MTR_6g005070 | 39.785 | 93 | 56 | 0 | 15 | 107 | 10 | 102 | 9.35e-21 | 84.3 |
| MS.gene031640.t1 | MTR_6g005080 | 39.785 | 93 | 56 | 0 | 15 | 107 | 11 | 103 | 2.31e-20 | 83.2 |
| MS.gene031640.t1 | MTR_5g083010 | 47.436 | 78 | 41 | 0 | 14 | 91 | 11 | 88 | 2.65e-20 | 84.0 |
| MS.gene031640.t1 | MTR_6g011230 | 38.053 | 113 | 67 | 1 | 7 | 116 | 4 | 116 | 3.12e-20 | 84.3 |
| MS.gene031640.t1 | MTR_7g074990 | 41.000 | 100 | 58 | 1 | 15 | 113 | 21 | 120 | 3.63e-20 | 85.1 |
| MS.gene031640.t1 | MTR_4g060950 | 39.362 | 94 | 56 | 1 | 15 | 107 | 25 | 118 | 3.76e-20 | 84.0 |
| MS.gene031640.t1 | MTR_5g017950 | 40.860 | 93 | 55 | 0 | 15 | 107 | 9 | 101 | 5.80e-20 | 85.9 |
| MS.gene031640.t1 | MTR_5g075020 | 45.455 | 77 | 42 | 0 | 15 | 91 | 44 | 120 | 7.06e-20 | 84.0 |
| MS.gene031640.t1 | MTR_5g075020 | 45.455 | 77 | 42 | 0 | 15 | 91 | 48 | 124 | 7.28e-20 | 84.0 |
| MS.gene031640.t1 | MTR_3g094690 | 37.113 | 97 | 61 | 0 | 15 | 111 | 48 | 144 | 8.98e-20 | 84.0 |
| MS.gene031640.t1 | MTR_3g071420 | 44.872 | 78 | 43 | 0 | 14 | 91 | 14 | 91 | 1.17e-19 | 82.4 |
| MS.gene031640.t1 | MTR_8g079580 | 40.404 | 99 | 58 | 1 | 15 | 112 | 9 | 107 | 1.34e-19 | 83.2 |
| MS.gene031640.t1 | MTR_8g040900 | 45.455 | 77 | 42 | 0 | 15 | 91 | 8 | 84 | 4.27e-19 | 82.0 |
| MS.gene031640.t1 | MTR_4g099230 | 40.404 | 99 | 58 | 1 | 15 | 112 | 3 | 101 | 4.68e-19 | 80.1 |
| MS.gene031640.t1 | MTR_8g079620 | 35.577 | 104 | 67 | 0 | 13 | 116 | 7 | 110 | 9.39e-19 | 81.3 |
| MS.gene031640.t1 | MTR_6g027700 | 35.644 | 101 | 64 | 1 | 15 | 114 | 8 | 108 | 9.98e-19 | 80.5 |
| MS.gene031640.t1 | MTR_3g452660 | 38.144 | 97 | 60 | 0 | 15 | 111 | 8 | 104 | 1.70e-18 | 81.6 |
| MS.gene031640.t1 | MTR_3g094690 | 38.144 | 97 | 59 | 1 | 15 | 111 | 48 | 143 | 1.82e-18 | 80.5 |
| MS.gene031640.t1 | MTR_5g080470 | 30.827 | 133 | 90 | 2 | 10 | 140 | 3 | 135 | 2.56e-18 | 79.0 |
| MS.gene031640.t1 | MTR_8g079660 | 34.314 | 102 | 67 | 0 | 15 | 116 | 9 | 110 | 6.32e-18 | 79.3 |
| MS.gene031640.t1 | MTR_8g036085 | 39.000 | 100 | 60 | 1 | 15 | 113 | 24 | 123 | 6.42e-18 | 79.0 |
| MS.gene031640.t1 | MTR_5g093010 | 35.484 | 93 | 60 | 0 | 15 | 107 | 6 | 98 | 6.79e-18 | 76.6 |
| MS.gene031640.t1 | MTR_7g028905 | 32.673 | 101 | 68 | 0 | 11 | 111 | 2 | 102 | 1.30e-17 | 75.5 |
| MS.gene031640.t1 | MTR_8g036105 | 36.111 | 108 | 68 | 1 | 15 | 121 | 19 | 126 | 3.43e-17 | 76.6 |
| MS.gene031640.t1 | MTR_5g085390 | 37.963 | 108 | 62 | 2 | 12 | 118 | 7 | 110 | 3.69e-17 | 77.0 |
| MS.gene031640.t1 | MTR_7g096530 | 34.677 | 124 | 70 | 3 | 1 | 123 | 1 | 114 | 4.90e-17 | 76.3 |
| MS.gene031640.t1 | MTR_6g027710 | 36.190 | 105 | 63 | 2 | 15 | 118 | 41 | 142 | 6.87e-17 | 76.3 |
| MS.gene031640.t1 | MTR_1g070220 | 29.936 | 157 | 92 | 5 | 15 | 169 | 16 | 156 | 9.17e-16 | 72.8 |
| MS.gene031640.t1 | MTR_7g096610 | 33.333 | 108 | 71 | 1 | 10 | 116 | 4 | 111 | 1.25e-15 | 72.8 |
| MS.gene031640.t1 | MTR_7g075230 | 48.052 | 77 | 37 | 2 | 15 | 88 | 13 | 89 | 6.99e-15 | 70.1 |
| MS.gene031640.t1 | MTR_1g070205 | 26.437 | 174 | 112 | 4 | 15 | 172 | 13 | 186 | 9.26e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031640.t1 | AT1G06280 | 59.406 | 101 | 34 | 1 | 12 | 112 | 22 | 115 | 1.76e-40 | 137 |
| MS.gene031640.t1 | AT3G13850 | 43.363 | 113 | 53 | 2 | 13 | 116 | 35 | 145 | 6.59e-28 | 106 |
| MS.gene031640.t1 | AT3G50510 | 37.383 | 107 | 67 | 0 | 15 | 121 | 13 | 119 | 2.13e-25 | 97.8 |
| MS.gene031640.t1 | AT3G50510 | 37.383 | 107 | 67 | 0 | 15 | 121 | 13 | 119 | 2.13e-25 | 97.8 |
| MS.gene031640.t1 | AT1G72980 | 45.098 | 102 | 56 | 0 | 10 | 111 | 9 | 110 | 2.40e-24 | 95.5 |
| MS.gene031640.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.59e-22 | 90.1 |
| MS.gene031640.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.59e-22 | 90.1 |
| MS.gene031640.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.59e-22 | 90.1 |
| MS.gene031640.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.59e-22 | 90.1 |
| MS.gene031640.t1 | AT1G07900 | 48.052 | 77 | 40 | 0 | 15 | 91 | 34 | 110 | 2.90e-22 | 89.4 |
| MS.gene031640.t1 | AT5G66870 | 33.571 | 140 | 78 | 2 | 15 | 140 | 8 | 146 | 3.26e-22 | 92.0 |
| MS.gene031640.t1 | AT2G28500 | 39.423 | 104 | 60 | 1 | 15 | 118 | 56 | 156 | 4.34e-22 | 90.1 |
| MS.gene031640.t1 | AT2G23660 | 41.935 | 93 | 54 | 0 | 15 | 107 | 6 | 98 | 3.01e-21 | 89.4 |
| MS.gene031640.t1 | AT2G23660 | 41.935 | 93 | 54 | 0 | 15 | 107 | 6 | 98 | 3.01e-21 | 89.4 |
| MS.gene031640.t1 | AT2G23660 | 41.935 | 93 | 54 | 0 | 15 | 107 | 6 | 98 | 3.01e-21 | 89.4 |
| MS.gene031640.t1 | AT1G16530 | 31.967 | 122 | 79 | 2 | 15 | 135 | 15 | 133 | 6.40e-21 | 85.5 |
| MS.gene031640.t1 | AT3G27650 | 35.849 | 106 | 68 | 0 | 3 | 108 | 28 | 133 | 8.56e-21 | 84.7 |
| MS.gene031640.t1 | AT2G30130 | 38.947 | 95 | 58 | 0 | 15 | 109 | 9 | 103 | 9.10e-21 | 85.5 |
| MS.gene031640.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 1.97e-20 | 84.7 |
| MS.gene031640.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 1.97e-20 | 84.7 |
| MS.gene031640.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 1.97e-20 | 84.7 |
| MS.gene031640.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 1.97e-20 | 84.7 |
| MS.gene031640.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 1.97e-20 | 84.7 |
| MS.gene031640.t1 | AT4G00210 | 36.752 | 117 | 73 | 1 | 7 | 122 | 4 | 120 | 5.53e-20 | 84.3 |
| MS.gene031640.t1 | AT2G30340 | 40.206 | 97 | 58 | 0 | 15 | 111 | 54 | 150 | 7.07e-20 | 84.7 |
| MS.gene031640.t1 | AT2G30340 | 40.206 | 97 | 58 | 0 | 15 | 111 | 53 | 149 | 8.74e-20 | 84.7 |
| MS.gene031640.t1 | AT3G47870 | 35.780 | 109 | 63 | 2 | 10 | 111 | 32 | 140 | 1.09e-19 | 85.1 |
| MS.gene031640.t1 | AT1G31320 | 37.363 | 91 | 57 | 0 | 6 | 96 | 5 | 95 | 1.50e-19 | 82.0 |
| MS.gene031640.t1 | AT3G11090 | 38.776 | 98 | 60 | 0 | 14 | 111 | 11 | 108 | 1.99e-19 | 81.3 |
| MS.gene031640.t1 | AT3G26660 | 32.110 | 109 | 67 | 1 | 15 | 116 | 6 | 114 | 1.46e-18 | 77.8 |
| MS.gene031640.t1 | AT3G26620 | 32.110 | 109 | 67 | 1 | 15 | 116 | 6 | 114 | 1.59e-18 | 77.8 |
| MS.gene031640.t1 | AT2G40470 | 36.735 | 98 | 62 | 0 | 15 | 112 | 21 | 118 | 2.64e-18 | 79.3 |
| MS.gene031640.t1 | AT2G40470 | 36.735 | 98 | 62 | 0 | 15 | 112 | 46 | 143 | 8.89e-18 | 78.6 |
| MS.gene031640.t1 | AT2G42430 | 43.750 | 80 | 44 | 1 | 10 | 88 | 11 | 90 | 1.81e-17 | 78.2 |
| MS.gene031640.t1 | AT4G00220 | 39.216 | 102 | 61 | 1 | 17 | 117 | 20 | 121 | 2.11e-17 | 77.4 |
| MS.gene031640.t1 | AT5G35900 | 36.170 | 94 | 56 | 1 | 14 | 107 | 5 | 94 | 3.55e-17 | 76.6 |
| MS.gene031640.t1 | AT2G45410 | 33.613 | 119 | 78 | 1 | 17 | 134 | 19 | 137 | 7.04e-17 | 75.5 |
| MS.gene031640.t1 | AT5G06080 | 34.694 | 98 | 63 | 1 | 14 | 110 | 7 | 104 | 9.17e-17 | 74.7 |
| MS.gene031640.t1 | AT2G31310 | 33.945 | 109 | 71 | 1 | 9 | 116 | 2 | 110 | 1.02e-16 | 74.7 |
| MS.gene031640.t1 | AT3G58190 | 30.303 | 132 | 88 | 2 | 15 | 142 | 12 | 143 | 3.79e-16 | 73.9 |
| MS.gene031640.t1 | AT2G19820 | 35.106 | 94 | 60 | 1 | 4 | 96 | 2 | 95 | 5.64e-16 | 71.2 |
| MS.gene031640.t1 | AT2G42440 | 30.275 | 109 | 75 | 1 | 9 | 116 | 2 | 110 | 1.55e-15 | 72.8 |
| MS.gene031640.t1 | AT3G03760 | 36.190 | 105 | 63 | 2 | 15 | 118 | 52 | 153 | 5.79e-15 | 71.6 |
| MS.gene031640.t1 | AT2G45420 | 37.255 | 102 | 63 | 1 | 17 | 117 | 40 | 141 | 6.80e-15 | 71.2 |
| MS.gene031640.t1 | AT5G15060 | 30.508 | 118 | 70 | 4 | 7 | 122 | 10 | 117 | 1.33e-12 | 62.8 |
Find 33 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGACTGCTGCTGAATATT+TGG | 0.145265 | 4.3:-29717703 | None:intergenic |
| TGAACAATATGTATTATAAA+TGG | 0.237268 | 4.3:-29717635 | None:intergenic |
| AGAAATATTAGTAATAATAA+TGG | 0.289856 | 4.3:+29717178 | MS.gene031640:CDS |
| TCTCCATAAGAACCATTTAT+AGG | 0.292857 | 4.3:-29717424 | None:intergenic |
| AATTCTCTACTTCTGCTTGA+TGG | 0.303337 | 4.3:-29717277 | None:intergenic |
| AAGTTGTGGATTCATTGATA+TGG | 0.307263 | 4.3:+29717377 | MS.gene031640:CDS |
| AGGCAAAGGGATCCTATAAA+TGG | 0.334383 | 4.3:+29717412 | MS.gene031640:CDS |
| GATCCTATAAATGGTTCTTA+TGG | 0.354301 | 4.3:+29717421 | MS.gene031640:CDS |
| TACAAGATCTTGATAGTTTG+AGG | 0.357044 | 4.3:+29717665 | MS.gene031640:CDS |
| GCACTTGCACCAATTGGCTT+TGG | 0.394194 | 4.3:-29717510 | None:intergenic |
| GTGACTGCTGCTGAATATTT+GGG | 0.405388 | 4.3:-29717702 | None:intergenic |
| AGTTGTGGATTCATTGATAT+GGG | 0.416674 | 4.3:+29717378 | MS.gene031640:CDS |
| GAAATATTAGTAATAATAAT+GGG | 0.417105 | 4.3:+29717179 | MS.gene031640:CDS |
| AAAGCAGTGCACAAAGTGTT+TGG | 0.418599 | 4.3:+29717301 | MS.gene031640:CDS |
| GAGGTGGCACTTGCACCAAT+TGG | 0.424290 | 4.3:-29717516 | None:intergenic |
| GATTATCATCATCTTCATCA+TGG | 0.452314 | 4.3:+29717580 | MS.gene031640:CDS |
| TCACAGTCATACTATATTGC+AGG | 0.457053 | 4.3:+29717721 | MS.gene031640:CDS |
| CTTCTGCTTGATGGAAAGTA+AGG | 0.478129 | 4.3:-29717268 | None:intergenic |
| TAGAGATCACCAAAGCCAAT+TGG | 0.482944 | 4.3:+29717501 | MS.gene031640:CDS |
| TAATCAACTGCATTATGATC+AGG | 0.493064 | 4.3:-29717562 | None:intergenic |
| ATTATCATCATCTTCATCAT+GGG | 0.522912 | 4.3:+29717581 | MS.gene031640:CDS |
| GCTCTAACTTTCCCTTGAGG+TGG | 0.530192 | 4.3:-29717532 | None:intergenic |
| CATCATGGGAATCATAAGAA+TGG | 0.531608 | 4.3:+29717595 | MS.gene031640:CDS |
| GGGAGATAGAAGAAAAGTTG+TGG | 0.539608 | 4.3:+29717363 | MS.gene031640:CDS |
| TGATATGGGAAGCACTCTCT+AGG | 0.540083 | 4.3:+29717392 | MS.gene031640:CDS |
| GCGCAGCATGCAAGCATCAA+AGG | 0.554577 | 4.3:+29717215 | MS.gene031640:CDS |
| GGAAGCACTCTCTAGGCAAA+GGG | 0.561200 | 4.3:+29717399 | MS.gene031640:CDS |
| GGGAAGCACTCTCTAGGCAA+AGG | 0.562224 | 4.3:+29717398 | MS.gene031640:CDS |
| TTGGTGCAAGTGCCACCTCA+AGG | 0.577515 | 4.3:+29717520 | MS.gene031640:CDS |
| TGGTGCAAGTGCCACCTCAA+GGG | 0.587697 | 4.3:+29717521 | MS.gene031640:CDS |
| TCTGCTCTAACTTTCCCTTG+AGG | 0.597530 | 4.3:-29717535 | None:intergenic |
| GTTTGTAAGAAATGCTCAAG+AGG | 0.598939 | 4.3:+29717342 | MS.gene031640:CDS |
| TTTGTAAGAAATGCTCAAGA+GGG | 0.635754 | 4.3:+29717343 | MS.gene031640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATATTAGTAATAATAA+TGG | + | chr4.3:29717178-29717197 | MS.gene031640:CDS | 10.0% |
| !! | GAAATATTAGTAATAATAAT+GGG | + | chr4.3:29717179-29717198 | MS.gene031640:CDS | 10.0% |
| !! | CACTAAATTAGTAATTAATT+TGG | + | chr4.3:29718039-29718058 | MS.gene031640:intron | 15.0% |
| !! | TGAACAATATGTATTATAAA+TGG | - | chr4.3:29717638-29717657 | None:intergenic | 15.0% |
| !! | TTTAACAAAAAACATGAGAT+TGG | - | chr4.3:29717752-29717771 | None:intergenic | 20.0% |
| !!! | TTTTCCTGTTTCAATATTTT+AGG | + | chr4.3:29718105-29718124 | MS.gene031640:intron | 20.0% |
| ! | AATTTGGTCAAACTATACTA+AGG | + | chr4.3:29718055-29718074 | MS.gene031640:intron | 25.0% |
| ! | AGTTGTGACATTATCAAATA+TGG | + | chr4.3:29717899-29717918 | MS.gene031640:intron | 25.0% |
| ! | ATTATCATCATCTTCATCAT+GGG | + | chr4.3:29717581-29717600 | MS.gene031640:CDS | 25.0% |
| AACAAAAAACATGAGATTGG+TGG | - | chr4.3:29717749-29717768 | None:intergenic | 30.0% | |
| AAGTTGTGGATTCATTGATA+TGG | + | chr4.3:29717377-29717396 | MS.gene031640:CDS | 30.0% | |
| AGTTGTGGATTCATTGATAT+GGG | + | chr4.3:29717378-29717397 | MS.gene031640:CDS | 30.0% | |
| GATCCTATAAATGGTTCTTA+TGG | + | chr4.3:29717421-29717440 | MS.gene031640:CDS | 30.0% | |
| GATTATCATCATCTTCATCA+TGG | + | chr4.3:29717580-29717599 | MS.gene031640:CDS | 30.0% | |
| GTCACCTAAAATATTGAAAC+AGG | - | chr4.3:29718112-29718131 | None:intergenic | 30.0% | |
| TAATCAACTGCATTATGATC+AGG | - | chr4.3:29717565-29717584 | None:intergenic | 30.0% | |
| TCTCCATAAGAACCATTTAT+AGG | - | chr4.3:29717427-29717446 | None:intergenic | 30.0% | |
| TTTGTAAGAAATGCTCAAGA+GGG | + | chr4.3:29717343-29717362 | MS.gene031640:CDS | 30.0% | |
| ! | TACAAGATCTTGATAGTTTG+AGG | + | chr4.3:29717665-29717684 | MS.gene031640:CDS | 30.0% |
| !! | ACTACAAAAGAGCACTATAT+GGG | - | chr4.3:29717967-29717986 | None:intergenic | 30.0% |
| AATTCTCTACTTCTGCTTGA+TGG | - | chr4.3:29717280-29717299 | None:intergenic | 35.0% | |
| CATCATGGGAATCATAAGAA+TGG | + | chr4.3:29717595-29717614 | MS.gene031640:CDS | 35.0% | |
| GTTTGTAAGAAATGCTCAAG+AGG | + | chr4.3:29717342-29717361 | MS.gene031640:CDS | 35.0% | |
| TCACAGTCATACTATATTGC+AGG | + | chr4.3:29717721-29717740 | MS.gene031640:CDS | 35.0% | |
| ! | CATATAGTGCTCTTTTGTAG+TGG | + | chr4.3:29717966-29717985 | MS.gene031640:intron | 35.0% |
| !! | CACTACAAAAGAGCACTATA+TGG | - | chr4.3:29717968-29717987 | None:intergenic | 35.0% |
| AGGCAAAGGGATCCTATAAA+TGG | + | chr4.3:29717412-29717431 | MS.gene031640:CDS | 40.0% | |
| CTTCTGCTTGATGGAAAGTA+AGG | - | chr4.3:29717271-29717290 | None:intergenic | 40.0% | |
| GAGCATACTTGTGACTAGTA+AGG | - | chr4.3:29717945-29717964 | None:intergenic | 40.0% | |
| GGGAGATAGAAGAAAAGTTG+TGG | + | chr4.3:29717363-29717382 | MS.gene031640:CDS | 40.0% | |
| GTGACTGCTGCTGAATATTT+GGG | - | chr4.3:29717705-29717724 | None:intergenic | 40.0% | |
| TAGAGATCACCAAAGCCAAT+TGG | + | chr4.3:29717501-29717520 | MS.gene031640:CDS | 40.0% | |
| TGTGACTGCTGCTGAATATT+TGG | - | chr4.3:29717706-29717725 | None:intergenic | 40.0% | |
| ! | AAAGCAGTGCACAAAGTGTT+TGG | + | chr4.3:29717301-29717320 | MS.gene031640:CDS | 40.0% |
| TCTGCTCTAACTTTCCCTTG+AGG | - | chr4.3:29717538-29717557 | None:intergenic | 45.0% | |
| !! | TGATATGGGAAGCACTCTCT+AGG | + | chr4.3:29717392-29717411 | MS.gene031640:CDS | 45.0% |
| GCTCTAACTTTCCCTTGAGG+TGG | - | chr4.3:29717535-29717554 | None:intergenic | 50.0% | |
| ! | GCACTTGCACCAATTGGCTT+TGG | - | chr4.3:29717513-29717532 | None:intergenic | 50.0% |
| !! | GGAAGCACTCTCTAGGCAAA+GGG | + | chr4.3:29717399-29717418 | MS.gene031640:CDS | 50.0% |
| GAGGTGGCACTTGCACCAAT+TGG | - | chr4.3:29717519-29717538 | None:intergenic | 55.0% | |
| GCGCAGCATGCAAGCATCAA+AGG | + | chr4.3:29717215-29717234 | MS.gene031640:CDS | 55.0% | |
| TGGTGCAAGTGCCACCTCAA+GGG | + | chr4.3:29717521-29717540 | MS.gene031640:CDS | 55.0% | |
| TTGGTGCAAGTGCCACCTCA+AGG | + | chr4.3:29717520-29717539 | MS.gene031640:CDS | 55.0% | |
| !! | GGGAAGCACTCTCTAGGCAA+AGG | + | chr4.3:29717398-29717417 | MS.gene031640:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 29717172 | 29718146 | 29717172 | ID=MS.gene031640 |
| chr4.3 | mRNA | 29717172 | 29718146 | 29717172 | ID=MS.gene031640.t1;Parent=MS.gene031640 |
| chr4.3 | exon | 29717172 | 29717742 | 29717172 | ID=MS.gene031640.t1.exon1;Parent=MS.gene031640.t1 |
| chr4.3 | CDS | 29717172 | 29717742 | 29717172 | ID=cds.MS.gene031640.t1;Parent=MS.gene031640.t1 |
| chr4.3 | exon | 29718127 | 29718146 | 29718127 | ID=MS.gene031640.t1.exon2;Parent=MS.gene031640.t1 |
| chr4.3 | CDS | 29718127 | 29718146 | 29718127 | ID=cds.MS.gene031640.t1;Parent=MS.gene031640.t1 |
| Gene Sequence |
| Protein sequence |
