AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031673

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031673.t1 MTR_4g078875 96.127 284 11 0 1 284 1 284 0.0 573
MS.gene031673.t1 MTR_2g090735 79.211 279 52 4 1 277 1 275 2.41e-151 424
MS.gene031673.t1 MTR_4g088245 66.790 271 76 7 13 277 32 294 2.27e-118 342
MS.gene031673.t1 MTR_2g014680 60.140 286 95 8 1 274 1 279 3.03e-111 324
MS.gene031673.t1 MTR_8g069160 73.239 213 50 4 13 220 32 242 4.78e-107 311
MS.gene031673.t1 MTR_8g102240 73.846 195 40 4 26 214 30 219 2.18e-94 287
MS.gene031673.t1 MTR_8g102240 73.846 195 40 4 26 214 30 219 2.24e-94 287
MS.gene031673.t1 MTR_5g053430 55.838 197 82 2 19 215 32 223 8.32e-70 222
MS.gene031673.t1 MTR_5g053430 55.838 197 82 2 19 215 32 223 9.89e-70 222
MS.gene031673.t1 MTR_1g093680 56.771 192 78 2 24 215 37 223 6.03e-69 221
MS.gene031673.t1 MTR_7g033320 54.054 185 82 1 24 208 34 215 5.37e-64 209
MS.gene031673.t1 MTR_1g093670 52.907 172 65 2 44 215 19 174 8.20e-50 168
MS.gene031673.t1 MTR_4g078895 71.642 67 19 0 23 89 12 78 1.32e-27 102
MS.gene031673.t1 MTR_3g435150 28.512 242 144 6 48 282 16 235 3.48e-16 77.4
MS.gene031673.t1 MTR_7g011120 29.469 207 109 7 43 235 3 186 3.70e-16 77.4
MS.gene031673.t1 MTR_1g008740 33.133 166 87 7 48 206 13 161 5.95e-16 77.4
MS.gene031673.t1 MTR_1g008740 33.133 166 87 7 48 206 27 175 6.79e-16 77.0
MS.gene031673.t1 MTR_7g011130 29.500 200 98 7 50 229 21 197 5.19e-15 74.7
MS.gene031673.t1 MTR_3g070030 32.168 143 79 4 48 189 19 144 6.22e-15 74.3
MS.gene031673.t1 MTR_6g012670 34.722 144 74 5 48 189 20 145 2.59e-14 72.4
MS.gene031673.t1 MTR_4g108760 33.333 144 76 5 48 189 17 142 7.72e-14 71.2
MS.gene031673.t1 MTR_7g005280 32.653 147 76 7 48 191 15 141 1.99e-13 68.9
MS.gene031673.t1 MTR_3g088110 28.641 206 105 8 48 246 7 177 3.96e-13 68.6
MS.gene031673.t1 MTR_5g014300 30.769 169 89 8 48 205 6 157 5.71e-13 68.6
MS.gene031673.t1 MTR_5g021710 29.310 174 82 8 48 206 8 155 1.69e-12 67.0
MS.gene031673.t1 MTR_3g093050 28.395 162 88 6 33 187 7 147 2.24e-12 67.4
MS.gene031673.t1 MTR_3g093050 28.395 162 88 6 33 187 7 147 2.72e-12 67.0
MS.gene031673.t1 MTR_3g116070 33.557 149 78 6 47 191 22 153 4.21e-12 65.9
MS.gene031673.t1 MTR_4g101680 29.480 173 95 7 42 206 1 154 9.19e-12 65.1
MS.gene031673.t1 MTR_5g012080 29.714 175 94 8 42 206 1 156 1.05e-11 64.7
MS.gene031673.t1 MTR_8g059170 31.469 143 80 4 48 189 14 139 1.13e-11 64.7
MS.gene031673.t1 MTR_2g080010 32.237 152 81 7 46 193 13 146 1.32e-11 64.7
MS.gene031673.t1 MTR_8g063550 29.143 175 98 7 45 211 3 159 1.50e-11 64.7
MS.gene031673.t1 MTR_8g063550 29.143 175 98 7 45 211 3 159 1.74e-11 64.3
MS.gene031673.t1 MTR_8g099750 30.000 150 83 7 43 189 9 139 1.80e-11 62.8
MS.gene031673.t1 MTR_8g063550 29.143 175 98 7 45 211 3 159 2.25e-11 63.9
MS.gene031673.t1 MTR_8g094580 30.345 145 82 5 48 191 7 133 2.79e-11 63.2
MS.gene031673.t1 MTR_0036s0150 32.121 165 84 8 51 206 8 153 6.16e-11 63.2
MS.gene031673.t1 MTR_7g100990 32.877 146 76 7 48 189 11 138 6.59e-11 62.4
MS.gene031673.t1 MTR_2g079990 31.707 164 90 6 48 207 16 161 7.01e-11 62.4
MS.gene031673.t1 MTR_3g064580 33.766 154 76 8 47 195 5 137 8.58e-11 62.8
MS.gene031673.t1 MTR_1g069805 29.480 173 99 8 41 208 2 156 8.85e-11 61.6
MS.gene031673.t1 MTR_2g079990 32.639 144 77 5 48 189 16 141 8.90e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031673.t1 AT4G28500 78.680 197 41 1 21 217 33 228 1.49e-113 330
MS.gene031673.t1 AT1G28470 78.462 195 39 2 23 215 50 243 9.30e-108 315
MS.gene031673.t1 AT4G29230 70.297 202 48 2 24 218 29 225 1.40e-97 293
MS.gene031673.t1 AT4G29230 70.297 202 48 2 24 218 29 225 6.32e-97 294
MS.gene031673.t1 AT4G29230 69.802 202 48 2 24 218 29 224 4.54e-96 291
MS.gene031673.t1 AT5G56620 65.025 203 57 4 26 218 25 223 4.68e-89 271
MS.gene031673.t1 AT5G56620 65.025 203 57 4 26 218 25 223 4.91e-89 271
MS.gene031673.t1 AT5G56620 65.025 203 57 4 26 218 25 223 1.05e-88 269
MS.gene031673.t1 AT1G25580 57.368 190 70 4 24 213 37 215 3.24e-66 213
MS.gene031673.t1 AT5G14490 50.532 188 88 3 26 213 36 218 1.09e-54 179
MS.gene031673.t1 AT5G14490 50.532 188 88 3 26 213 36 218 2.93e-54 179
MS.gene031673.t1 AT5G14490 50.532 188 88 3 26 213 39 221 2.97e-54 179
MS.gene031673.t1 AT5G14490 50.532 188 88 3 26 213 39 221 4.22e-54 179
MS.gene031673.t1 AT3G01600 45.972 211 98 4 15 210 7 216 5.29e-50 169
MS.gene031673.t1 AT3G04060 31.667 180 98 6 40 211 12 174 1.77e-15 75.9
MS.gene031673.t1 AT5G61430 34.965 143 75 5 48 189 16 141 3.46e-15 75.1
MS.gene031673.t1 AT5G18270 32.778 180 94 7 41 211 14 175 8.00e-15 73.9
MS.gene031673.t1 AT5G53950 31.959 194 97 9 37 218 9 179 4.58e-14 72.0
MS.gene031673.t1 AT5G39610 34.722 144 74 5 48 189 20 145 5.25e-14 70.9
MS.gene031673.t1 AT5G07680 30.769 169 93 5 48 209 3 154 8.36e-14 70.9
MS.gene031673.t1 AT1G02230 31.638 177 95 7 49 218 4 161 8.73e-14 71.2
MS.gene031673.t1 AT5G07680 30.769 169 93 5 48 209 17 168 8.97e-14 70.9
MS.gene031673.t1 AT1G01720 32.000 150 83 5 42 190 1 132 1.18e-13 70.1
MS.gene031673.t1 AT4G36160 32.738 168 86 7 47 206 9 157 1.31e-13 70.5
MS.gene031673.t1 AT4G36160 32.738 168 86 7 47 206 9 157 1.31e-13 70.5
MS.gene031673.t1 AT4G36160 32.738 168 86 7 47 206 13 161 1.64e-13 70.5
MS.gene031673.t1 AT5G04410 30.000 170 93 6 48 209 9 160 2.58e-13 70.1
MS.gene031673.t1 AT1G02220 33.566 143 74 6 49 188 4 128 6.79e-13 68.6
MS.gene031673.t1 AT1G12260 30.058 173 94 8 42 206 1 154 1.49e-12 67.8
MS.gene031673.t1 AT1G12260 30.058 173 94 8 42 206 1 154 1.64e-12 67.4
MS.gene031673.t1 AT5G46590 29.697 165 94 7 48 205 6 155 2.27e-12 66.2
MS.gene031673.t1 AT2G33480 30.872 149 82 6 48 195 15 143 6.15e-12 65.1
MS.gene031673.t1 AT2G33480 29.878 164 92 7 48 208 15 158 6.16e-12 64.7
MS.gene031673.t1 AT5G46590 31.081 148 85 6 48 193 6 138 7.53e-12 64.7
MS.gene031673.t1 AT5G08790 31.250 144 80 5 48 190 7 132 7.73e-12 64.7
MS.gene031673.t1 AT5G13180 33.562 146 72 8 48 189 14 138 2.11e-11 63.2
MS.gene031673.t1 AT1G34190 31.293 147 79 6 51 193 19 147 2.16e-11 64.3
MS.gene031673.t1 AT1G62700 29.480 173 95 7 42 206 1 154 2.50e-11 63.9
MS.gene031673.t1 AT1G62700 29.480 173 95 7 42 206 1 154 2.50e-11 63.9
MS.gene031673.t1 AT1G34180 31.544 149 78 7 51 195 19 147 3.34e-11 63.9
MS.gene031673.t1 AT1G76420 29.834 181 94 8 47 216 21 179 3.39e-11 63.2
MS.gene031673.t1 AT1G61110 32.877 146 79 6 46 189 14 142 3.53e-11 63.2
MS.gene031673.t1 AT3G12977 25.103 243 123 9 48 276 18 215 4.65e-11 62.4
MS.gene031673.t1 AT1G34180 31.544 149 78 7 51 195 19 147 5.13e-11 63.2
MS.gene031673.t1 AT4G10350 28.402 169 94 6 47 206 8 158 6.65e-11 62.4

Find 59 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGAAAGACTCTATTCT+TGG 0.244819 4.3:-30333831 MS.gene031673:CDS
CCTACTCTTGAAGGAGAAAA+TGG 0.244985 4.3:-30337646 MS.gene031673:CDS
CTTGTACTTTACACAAACTA+TGG 0.313224 4.3:-30333996 MS.gene031673:CDS
TCAAGAGATTCTTGAACATT+TGG 0.316828 4.3:-30337725 MS.gene031673:CDS
GAAAGGCAGAGAAAACAAAT+TGG 0.326530 4.3:-30333965 MS.gene031673:CDS
TATATACCTGGTAGTTTCTC+TGG 0.365477 4.3:+30337607 None:intergenic
GGTGAAAGAAATGGCGGATC+AGG 0.399922 4.3:+30334165 None:intergenic
TTCACTCCAGCTGGCAATCC+AGG 0.423620 4.3:+30337763 None:intergenic
CACTTGAATCAAGGATTGAA+TGG 0.428533 4.3:+30333648 None:intergenic
CATAGTTTGTGTAAAGTACA+AGG 0.433161 4.3:+30333997 None:intergenic
GAGTTCATCCCTACTCTTGA+AGG 0.437508 4.3:-30337655 MS.gene031673:CDS
TGATCCGCCATTTCTTTCAC+CGG 0.439231 4.3:-30334163 MS.gene031673:CDS
TGTTCCTGTTGTGTATGCCT+TGG 0.446215 4.3:+30334136 None:intergenic
GAAACCCGTTGGCATAAAAC+AGG 0.460349 4.3:-30334071 MS.gene031673:CDS
AACTTGGAATTGTTGTAGAC+TGG 0.461374 4.3:+30334038 None:intergenic
TCTTCAGGAGTAAGCAAAGA+TGG 0.468322 4.3:-30334188 MS.gene031673:intron
CCATCCAAGGCATACACAAC+AGG 0.469431 4.3:-30334140 MS.gene031673:CDS
GAATTACCACCACACTGTCT+TGG 0.486516 4.3:+30333858 None:intergenic
TTGTGTATGCCTTGGATGGC+CGG 0.487616 4.3:+30334144 None:intergenic
GACTTACCTGGATTGCCAGC+TGG 0.488076 4.3:-30337769 MS.gene031673:CDS
AATTTCATATCATTTGATCA+AGG 0.491183 4.3:-30333723 MS.gene031673:CDS
TCTTGAACATTTGGAAGCAA+AGG 0.493075 4.3:-30337716 MS.gene031673:CDS
AAAGGCAGAGAAAACAAATT+GGG 0.493263 4.3:-30333964 MS.gene031673:CDS
GTGATGCATCAGTATCATCT+TGG 0.493893 4.3:-30333942 MS.gene031673:CDS
TTGAGTTTGATAGAAAACTT+TGG 0.497854 4.3:+30333881 None:intergenic
ATTTCATATCATTTGATCAA+GGG 0.503525 4.3:-30333722 MS.gene031673:CDS
TGATGCATCAGTATCATCTT+GGG 0.507024 4.3:-30333941 MS.gene031673:CDS
TCATATCAAAGGGCAAGATC+AGG 0.513679 4.3:-30338146 MS.gene031673:intron
GGATCAAACTTCACTCCAGC+TGG 0.519384 4.3:+30337754 None:intergenic
AATAATAGCATCACAGTGGA+TGG 0.523592 4.3:-30338211 MS.gene031673:CDS
GAGCATTGCTAGACCTATGT+TGG 0.524291 4.3:+30333697 None:intergenic
GGGATGAACTCATCAATTAG+AGG 0.528142 4.3:+30337667 None:intergenic
TACAACAATTCCAAGTTGAA+AGG 0.529222 4.3:-30334032 MS.gene031673:CDS
AAACTATGGAAAACAAAGAA+AGG 0.529627 4.3:-30333982 MS.gene031673:CDS
ACATGTGGTCATCATATCAA+AGG 0.530280 4.3:-30338157 MS.gene031673:CDS
TTGATCAAGGGAACCAACAT+AGG 0.533507 4.3:-30333710 MS.gene031673:CDS
TCAAGAATCTCTTGATCTGT+AGG 0.534425 4.3:+30337733 None:intergenic
TGGATGGCCGGTGAAAGAAA+TGG 0.540700 4.3:+30334156 None:intergenic
CATCACAGTGGATGGAAGAA+AGG 0.544845 4.3:-30338203 MS.gene031673:CDS
GGTGGAATTAATGACTTACC+TGG 0.548384 4.3:-30337781 MS.gene031673:CDS
CCTGTTGTGTATGCCTTGGA+TGG 0.549971 4.3:+30334140 None:intergenic
CATGTGGTCATCATATCAAA+GGG 0.557094 4.3:-30338156 MS.gene031673:CDS
AGTGATGAAGAAGAGAAAGA+AGG 0.559824 4.3:-30333918 MS.gene031673:CDS
TTTCTTTCACCGGCCATCCA+AGG 0.565155 4.3:-30334153 MS.gene031673:CDS
GAAGGGTCAAAGTGGGAATG+AGG 0.565748 4.3:-30333799 MS.gene031673:CDS
AAACTATGAAGGGTCAAAGT+GGG 0.577178 4.3:-30333806 MS.gene031673:CDS
AGTGGGAATGAGGTAATCAA+TGG 0.579023 4.3:-30333789 MS.gene031673:CDS
ACTCATCCAGAGAAACTACC+AGG 0.603901 4.3:-30337613 MS.gene031673:intron
AAAACTATGAAGGGTCAAAG+TGG 0.604850 4.3:-30333807 MS.gene031673:CDS
GTACATTCGGATCACGAGGA+CGG 0.605336 4.3:-30334098 MS.gene031673:CDS
GGATGAACTCATCAATTAGA+GGG 0.619021 4.3:+30337668 None:intergenic
AACATTTGGAAGCAAAGGTG+AGG 0.627859 4.3:-30337711 MS.gene031673:CDS
ATTAGAACTTGTCTCACATG+TGG 0.635438 4.3:-30338172 MS.gene031673:CDS
AGGACGGAAGCGAAACCCGT+TGG 0.648723 4.3:-30334082 MS.gene031673:CDS
AAAAGTACATTCGGATCACG+AGG 0.691199 4.3:-30334102 MS.gene031673:CDS
AAACAATAATAGCATCACAG+TGG 0.704092 4.3:-30338215 MS.gene031673:CDS
ATGGCCGGTGAAAGAAATGG+CGG 0.706386 4.3:+30334159 None:intergenic
CAAACTCAACCAAGACAGTG+TGG 0.711030 4.3:-30333867 MS.gene031673:CDS
ACTCAACCAAGACAGTGTGG+TGG 0.739755 4.3:-30333864 MS.gene031673:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG + chr4.3:30334475-30334456 None:intergenic 0.0%
!! ATATCAATGAAAAATAATTA+GGG - chr4.3:30334089-30334108 MS.gene031673:CDS 10.0%
!! TTTCAAGATAAATTAATAAA+AGG - chr4.3:30335692-30335711 MS.gene031673:intron 10.0%
!!! AAAACTATTTTTCAATAAAT+TGG + chr4.3:30335769-30335788 None:intergenic 10.0%
!!! ATTTAATTTACTCAAAAAAT+TGG - chr4.3:30337416-30337435 MS.gene031673:intron 10.0%
!! AAATTAACATTTCAATATTC+AGG - chr4.3:30335120-30335139 MS.gene031673:intron 15.0%
!! AAATTGAATTATATTTCTTC+AGG - chr4.3:30337691-30337710 MS.gene031673:CDS 15.0%
!! ACATTAAAATATACATAAGT+TGG + chr4.3:30334618-30334637 None:intergenic 15.0%
!! AGATAAATAAAACTAAAGAA+TGG - chr4.3:30336993-30337012 MS.gene031673:intron 15.0%
!! ATAAATAAAACTAAAGAATG+GGG - chr4.3:30336995-30337014 MS.gene031673:intron 15.0%
!! ATGATAAATAATGTTTATCA+TGG + chr4.3:30333797-30333816 None:intergenic 15.0%
!! CAATATTCATATAAACTTAA+TGG + chr4.3:30336486-30336505 None:intergenic 15.0%
!! CATATTTAACCTAAAATAAA+AGG + chr4.3:30334425-30334444 None:intergenic 15.0%
!! CATTAAGTTTATATGAATAT+TGG - chr4.3:30336484-30336503 MS.gene031673:intron 15.0%
!! CTAAGATTATAAGAATTATT+AGG + chr4.3:30335746-30335765 None:intergenic 15.0%
!! GATAAATAAAACTAAAGAAT+GGG - chr4.3:30336994-30337013 MS.gene031673:intron 15.0%
!! GATATCAATGAAAAATAATT+AGG - chr4.3:30334088-30334107 MS.gene031673:CDS 15.0%
!! TGAAAATAAAATTGTAATGT+TGG + chr4.3:30336297-30336316 None:intergenic 15.0%
!! TTGCAATTAAAAAAATTGAA+TGG + chr4.3:30336564-30336583 None:intergenic 15.0%
!!! AAAAAAAGTTATTAGTTTCT+AGG + chr4.3:30334027-30334046 None:intergenic 15.0%
!!! AAAGTGAAATTTATTTTTAG+AGG - chr4.3:30334874-30334893 MS.gene031673:intron 15.0%
!!! AACTTTTTTTTCTTTTAGTT+TGG - chr4.3:30334037-30334056 MS.gene031673:CDS 15.0%
!!! AAGTGAAATTTATTTTTAGA+GGG - chr4.3:30334875-30334894 MS.gene031673:intron 15.0%
!!! AATTGATGATGTTTTTTTTA+AGG - chr4.3:30335167-30335186 MS.gene031673:intron 15.0%
!!! AGTCCTTATTTTAATTTTAT+AGG - chr4.3:30333880-30333899 MS.gene031673:CDS 15.0%
!!! AGTTTTATTTATCTTAGTTT+GGG + chr4.3:30336987-30337006 None:intergenic 15.0%
!!! ATAAGTTTACCTTTTATTTT+AGG - chr4.3:30334413-30334432 MS.gene031673:intron 15.0%
!!! ATTGATGATGTTTTTTTTAA+GGG - chr4.3:30335168-30335187 MS.gene031673:intron 15.0%
!!! GTCCTTATTTTAATTTTATA+GGG - chr4.3:30333881-30333900 MS.gene031673:CDS 15.0%
!!! TAGTTTTATTTATCTTAGTT+TGG + chr4.3:30336988-30337007 None:intergenic 15.0%
!!! TTATGTATTTAATTTGAGTT+CGG - chr4.3:30337269-30337288 MS.gene031673:intron 15.0%
!!! TTTATTTTCATTGAATAACA+TGG - chr4.3:30334950-30334969 MS.gene031673:intron 15.0%
!!! TTTTTATTAAGTAAGATACA+TGG + chr4.3:30335843-30335862 None:intergenic 15.0%
!! AAACATCAAAAGAAAATGAA+TGG + chr4.3:30335253-30335272 None:intergenic 20.0%
!! AAGATTCATTGATATAAACT+AGG - chr4.3:30336021-30336040 MS.gene031673:intron 20.0%
!! AATATTCAGGCTAATAATAA+TGG - chr4.3:30335133-30335152 MS.gene031673:intron 20.0%
!! AATTTCATATCATTTGATCA+AGG - chr4.3:30338171-30338190 MS.gene031673:CDS 20.0%
!! ACAAACTCTAATATCAAATT+AGG + chr4.3:30336963-30336982 None:intergenic 20.0%
!! ACAACTACTTTAATAGATTA+TGG + chr4.3:30335359-30335378 None:intergenic 20.0%
!! AGATTCATTGATATAAACTA+GGG - chr4.3:30336022-30336041 MS.gene031673:intron 20.0%
!! AGTTATGGGTTTATAATTTA+GGG + chr4.3:30336894-30336913 None:intergenic 20.0%
!! ATTAAAAAAATTGAATGGAG+AGG + chr4.3:30336559-30336578 None:intergenic 20.0%
!! ATTATTAAAAGGGTAACTAA+AGG - chr4.3:30336593-30336612 MS.gene031673:intron 20.0%
!! ATTTCATATCATTTGATCAA+GGG - chr4.3:30338172-30338191 MS.gene031673:CDS 20.0%
!! CAAACTCTAATATCAAATTA+GGG + chr4.3:30336962-30336981 None:intergenic 20.0%
!! GTCCCTATAAAATTAAAATA+AGG + chr4.3:30333886-30333905 None:intergenic 20.0%
!! GTTTACATTTCTTACATTAT+AGG + chr4.3:30336362-30336381 None:intergenic 20.0%
!! TAAATAAAACTAAAGAATGG+GGG - chr4.3:30336996-30337015 MS.gene031673:intron 20.0%
!! TAATGTAATTGTGTAGAAAT+GGG - chr4.3:30334632-30334651 MS.gene031673:intron 20.0%
!! TATGAGTTTACTTAAAATGA+TGG - chr4.3:30334816-30334835 MS.gene031673:intron 20.0%
!! TATTGTATGTAATATATACC+TGG + chr4.3:30334302-30334321 None:intergenic 20.0%
!! TGAAATTAAAATGATAGAGA+AGG + chr4.3:30335095-30335114 None:intergenic 20.0%
!! TGCGAATTTAATGATAAATA+AGG - chr4.3:30335397-30335416 MS.gene031673:intron 20.0%
!! TGTGATTTAATTAGCATAAA+TGG + chr4.3:30335067-30335086 None:intergenic 20.0%
!! TTAAAAATAGGGACAAAAAA+TGG + chr4.3:30334594-30334613 None:intergenic 20.0%
!! TTAATGTAATTGTGTAGAAA+TGG - chr4.3:30334631-30334650 MS.gene031673:intron 20.0%
!! TTGAGTAAATTAAATGAGTT+CGG + chr4.3:30337411-30337430 None:intergenic 20.0%
!!! AAAAAGAAGAAAAGTACATT+CGG - chr4.3:30337783-30337802 MS.gene031673:CDS 20.0%
!!! AATATTGACATTTTACTATG+TGG - chr4.3:30337206-30337225 MS.gene031673:intron 20.0%
!!! ATGAATTTGATAACAAATCT+GGG + chr4.3:30337085-30337104 None:intergenic 20.0%
!!! ATGGTGATTGAAAATTTTAT+AGG + chr4.3:30334575-30334594 None:intergenic 20.0%
!!! ATTTGTTATCAAATTCATCA+CGG - chr4.3:30337087-30337106 MS.gene031673:intron 20.0%
!!! TATGTATTTAATTTGAGTTC+GGG - chr4.3:30337270-30337289 MS.gene031673:intron 20.0%
!!! TTAGTATTTTTCTTATGTTG+CGG - chr4.3:30336696-30336715 MS.gene031673:intron 20.0%
!!! TTTTAACTCGATTTTAATGT+TGG + chr4.3:30336220-30336239 None:intergenic 20.0%
!!! TTTTTTGTCTAATTGTGAAT+TGG + chr4.3:30337508-30337527 None:intergenic 20.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr4.3:30335489-30335508 MS.gene031673:intron 25.0%
! AAACTATGGAAAACAAAGAA+AGG - chr4.3:30337912-30337931 MS.gene031673:intron 25.0%
! AAATTCAAACCAAACAAATG+CGG - chr4.3:30336143-30336162 MS.gene031673:intron 25.0%
! AACATTGCATATATTATGCA+AGG - chr4.3:30335967-30335986 MS.gene031673:intron 25.0%
! AATCAACAGAAAGTCAATAT+TGG - chr4.3:30337166-30337185 MS.gene031673:intron 25.0%
! AGCTAAAACATCAAAAGAAA+AGG - chr4.3:30335484-30335503 MS.gene031673:intron 25.0%
! AGTGCTTATAAAAATAGACA+AGG + chr4.3:30335542-30335561 None:intergenic 25.0%
! ATCAAAAGAAAATGAATGGA+GGG + chr4.3:30335249-30335268 None:intergenic 25.0%
! ATCTAACGGTTAAGTATAAA+TGG - chr4.3:30337362-30337381 MS.gene031673:intron 25.0%
! ATGTGGCAAAAAAAATCTAA+CGG - chr4.3:30337348-30337367 MS.gene031673:intron 25.0%
! ATTATGAAAGACTCTATTCT+TGG - chr4.3:30338063-30338082 MS.gene031673:intron 25.0%
! ATTCTTGGAAAAACTATGAA+GGG - chr4.3:30338078-30338097 MS.gene031673:intron 25.0%
! GAGTTATGGGTTTATAATTT+AGG + chr4.3:30336895-30336914 None:intergenic 25.0%
! GAGTTCAAACTAATAGAAAA+AGG - chr4.3:30337469-30337488 MS.gene031673:intron 25.0%
! GATTCATTGATATAAACTAG+GGG - chr4.3:30336023-30336042 MS.gene031673:intron 25.0%
! GCTAATAATAATGGTTAAGA+GGG - chr4.3:30335142-30335161 MS.gene031673:intron 25.0%
! GTAGAGACTAAATTAAAAAG+TGG - chr4.3:30333989-30334008 MS.gene031673:CDS 25.0%
! GTGCTTATAAAAATAGACAA+GGG + chr4.3:30335541-30335560 None:intergenic 25.0%
! GTTATGGGTTTATAATTTAG+GGG + chr4.3:30336893-30336912 None:intergenic 25.0%
! TAGAGACTAAATTAAAAACG+TGG - chr4.3:30336325-30336344 MS.gene031673:intron 25.0%
! TAGTACAAGACAAATAGTTT+AGG - chr4.3:30337556-30337575 MS.gene031673:intron 25.0%
! TATTCTTGGAAAAACTATGA+AGG - chr4.3:30338077-30338096 MS.gene031673:intron 25.0%
! TCAATGAAAAATAATTAGGG+TGG - chr4.3:30334092-30334111 MS.gene031673:CDS 25.0%
! TGAGTAAATTAAATGAGTTC+GGG + chr4.3:30337410-30337429 None:intergenic 25.0%
! TGGCAGTTAAAAATTGATAT+TGG + chr4.3:30334679-30334698 None:intergenic 25.0%
! TTATAGGTACTAAAAGTTGA+AGG + chr4.3:30334559-30334578 None:intergenic 25.0%
! TTGAGTTTGATAGAAAACTT+TGG + chr4.3:30338016-30338035 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr4.3:30334546-30334565 None:intergenic 25.0%
!! ACATAAGTTGGCTTAAAAAT+AGG + chr4.3:30334606-30334625 None:intergenic 25.0%
!! ATTAAAGTAGTTGTGACTTT+TGG - chr4.3:30335365-30335384 MS.gene031673:intron 25.0%
!! CACTAAAACATCAAAAGTTT+TGG + chr4.3:30335294-30335313 None:intergenic 25.0%
!! CATAAGTTGGCTTAAAAATA+GGG + chr4.3:30334605-30334624 None:intergenic 25.0%
!! GATGAATTTGATAACAAATC+TGG + chr4.3:30337086-30337105 None:intergenic 25.0%
!! GTTTATATGAATATTGGTCT+AGG - chr4.3:30336490-30336509 MS.gene031673:intron 25.0%
!! GTTTTGTCAAATATCAATGA+GGG - chr4.3:30337048-30337067 MS.gene031673:intron 25.0%
!! TCTACACTTTCAAACATTTT+TGG - chr4.3:30336913-30336932 MS.gene031673:intron 25.0%
!! TTTCTATTAGTTTGAACTCA+AGG + chr4.3:30337468-30337487 None:intergenic 25.0%
!!! ATAGTTTAGGATGCTTTTTA+AGG - chr4.3:30337569-30337588 MS.gene031673:intron 25.0%
!!! GAAAACGGAAATTTTTTGAA+GGG - chr4.3:30334848-30334867 MS.gene031673:intron 25.0%
!!! TGAAAACGGAAATTTTTTGA+AGG - chr4.3:30334847-30334866 MS.gene031673:intron 25.0%
!!! TGACTTTCTGTTGATTTTAT+AGG + chr4.3:30337162-30337181 None:intergenic 25.0%
!!! TGATGCTATTATTGTTTTGA+GGG + chr4.3:30333676-30333695 None:intergenic 25.0%
!!! TTCTTTTTTATACAACCGTA+TGG + chr4.3:30336774-30336793 None:intergenic 25.0%
!!! TTTTTTGTAACCTTTCAACT+TGG + chr4.3:30337875-30337894 None:intergenic 25.0%
AAACAATAATAGCATCACAG+TGG - chr4.3:30333679-30333698 MS.gene031673:CDS 30.0%
AAAGGCAGAGAAAACAAATT+GGG - chr4.3:30337930-30337949 MS.gene031673:intron 30.0%
AGCTTGATAAATAAGAAGCT+AGG + chr4.3:30337630-30337649 None:intergenic 30.0%
AGGGACTAAATTTAATGACT+AGG - chr4.3:30333900-30333919 MS.gene031673:CDS 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr4.3:30335493-30335512 MS.gene031673:intron 30.0%
ATCTCCATTTACTCCATTTA+AGG - chr4.3:30337311-30337330 MS.gene031673:intron 30.0%
ATGAAAAATAATTAGGGTGG+TGG - chr4.3:30334095-30334114 MS.gene031673:CDS 30.0%
CAAACCTTAAATGGAGTAAA+TGG + chr4.3:30337318-30337337 None:intergenic 30.0%
CAGGTTCCTTAATTAAAACT+TGG - chr4.3:30333767-30333786 MS.gene031673:CDS 30.0%
CATCAAAAGAAAATGAATGG+AGG + chr4.3:30335250-30335269 None:intergenic 30.0%
CATTAAAATAGCAATGCCAT+GGG + chr4.3:30337139-30337158 None:intergenic 30.0%
CTTGTACTTTACACAAACTA+TGG - chr4.3:30337898-30337917 MS.gene031673:intron 30.0%
GGCTAATAATAATGGTTAAG+AGG - chr4.3:30335141-30335160 MS.gene031673:intron 30.0%
TCAAGAGATTCTTGAACATT+TGG - chr4.3:30334169-30334188 MS.gene031673:CDS 30.0%
TGATGGAACAAAAGTGAAAA+CGG - chr4.3:30334833-30334852 MS.gene031673:intron 30.0%
! AATTTGATAACAAATCTGGG+TGG + chr4.3:30337082-30337101 None:intergenic 30.0%
! ATATGAATATTGGTCTAGGT+GGG - chr4.3:30336494-30336513 MS.gene031673:intron 30.0%
! ATTATGGTGTTTTCCAACAA+GGG + chr4.3:30335343-30335362 None:intergenic 30.0%
! ATTTTTCTTATGTTGCGGTT+TGG - chr4.3:30336701-30336720 MS.gene031673:intron 30.0%
! CATAGTTTGTGTAAAGTACA+AGG + chr4.3:30337900-30337919 None:intergenic 30.0%
! CATTTACTCCATTTAAGGTT+TGG - chr4.3:30337316-30337335 MS.gene031673:intron 30.0%
! CGTTGAAGTAACATTTTTGT+AGG - chr4.3:30335030-30335049 MS.gene031673:intron 30.0%
! GTTTGAAAGTGTAGAGTTAT+GGG + chr4.3:30336908-30336927 None:intergenic 30.0%
! TACAACAATTCCAAGTTGAA+AGG - chr4.3:30337862-30337881 MS.gene031673:intron 30.0%
! TATATGAATATTGGTCTAGG+TGG - chr4.3:30336493-30336512 MS.gene031673:intron 30.0%
! TGTTTGAAAGTGTAGAGTTA+TGG + chr4.3:30336909-30336928 None:intergenic 30.0%
! TTCTATTTTCTTTTTGTGCG+TGG - chr4.3:30334737-30334756 MS.gene031673:intron 30.0%
! TTTTACCTGTTTTATGCCAA+CGG + chr4.3:30337831-30337850 None:intergenic 30.0%
! TTTTATACAACCGTATGGTT+TGG + chr4.3:30336769-30336788 None:intergenic 30.0%
!! GGTTTTGTCAAATATCAATG+AGG - chr4.3:30337047-30337066 MS.gene031673:intron 30.0%
!! GTGATGCTATTATTGTTTTG+AGG + chr4.3:30333677-30333696 None:intergenic 30.0%
!! TAAATGGAGATTAGCCTAAA+TGG + chr4.3:30337302-30337321 None:intergenic 30.0%
!!! AATGGATTAGAACTTTTGAC+CGG + chr4.3:30335213-30335232 None:intergenic 30.0%
!!! GGCAAACCAAGTTTTAATTA+AGG + chr4.3:30333776-30333795 None:intergenic 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG - chr4.3:30336858-30336877 MS.gene031673:intron 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG + chr4.3:30335482-30335501 None:intergenic 30.0%
!!! TGTTTTTTCATCTTGCAGTT+CGG + chr4.3:30336092-30336111 None:intergenic 30.0%
AAAACTATGAAGGGTCAAAG+TGG - chr4.3:30338087-30338106 MS.gene031673:intron 35.0%
AAACCACAAAAAACCGCATT+TGG + chr4.3:30336814-30336833 None:intergenic 35.0%
AAACTATGAAGGGTCAAAGT+GGG - chr4.3:30338088-30338107 MS.gene031673:intron 35.0%
AACTCAAGGAATCAAGTCTT+TGG + chr4.3:30337454-30337473 None:intergenic 35.0%
AACTTGGAATTGTTGTAGAC+TGG + chr4.3:30337859-30337878 None:intergenic 35.0%
AATAATAGCATCACAGTGGA+TGG - chr4.3:30333683-30333702 MS.gene031673:CDS 35.0%
AATGGCAAAAACAGTACTAG+TGG - chr4.3:30338123-30338142 MS.gene031673:intron 35.0%
ACAAAAAACCGCATTTGGTT+TGG + chr4.3:30336809-30336828 None:intergenic 35.0%
ACAAATGCGGTTTATTGGAT+TGG - chr4.3:30336156-30336175 MS.gene031673:intron 35.0%
ACATGTGGTCATCATATCAA+AGG - chr4.3:30333737-30333756 MS.gene031673:CDS 35.0%
ACCAAACAAATGCGGTTTAT+TGG - chr4.3:30336151-30336170 MS.gene031673:intron 35.0%
AGAAGCTAGGTACAAAGTTA+TGG + chr4.3:30337617-30337636 None:intergenic 35.0%
AGTGATGAAGAAGAGAAAGA+AGG - chr4.3:30337976-30337995 MS.gene031673:intron 35.0%
ATGGGGGATAAATTCTAAAC+CGG - chr4.3:30337012-30337031 MS.gene031673:intron 35.0%
ATGTATTCGTGTCAGATACA+TGG + chr4.3:30335884-30335903 None:intergenic 35.0%
ATTAGAACTTGTCTCACATG+TGG - chr4.3:30333722-30333741 MS.gene031673:CDS 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr4.3:30335492-30335511 MS.gene031673:intron 35.0%
CATGTGGTCATCATATCAAA+GGG - chr4.3:30333738-30333757 MS.gene031673:CDS 35.0%
CTGCAAGATGAAAAAACATG+TGG - chr4.3:30336094-30336113 MS.gene031673:intron 35.0%
CTTAGCTTCAAATATACCCA+TGG - chr4.3:30337120-30337139 MS.gene031673:intron 35.0%
GAAAGGCAGAGAAAACAAAT+TGG - chr4.3:30337929-30337948 MS.gene031673:intron 35.0%
GAAGCTAGGTACAAAGTTAT+GGG + chr4.3:30337616-30337635 None:intergenic 35.0%
GAATACATCCAAACCAAATG+CGG - chr4.3:30336798-30336817 MS.gene031673:intron 35.0%
GCATTAAAATAGCAATGCCA+TGG + chr4.3:30337140-30337159 None:intergenic 35.0%
GGATGAACTCATCAATTAGA+GGG + chr4.3:30334229-30334248 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG - chr4.3:30337378-30337397 MS.gene031673:intron 35.0%
TATATACCTGGTAGTTTCTC+TGG + chr4.3:30334290-30334309 None:intergenic 35.0%
TCAAGAATCTCTTGATCTGT+AGG + chr4.3:30334164-30334183 None:intergenic 35.0%
TCCAATAAACCGCATTTGTT+TGG + chr4.3:30336155-30336174 None:intergenic 35.0%
TCTTGAACATTTGGAAGCAA+AGG - chr4.3:30334178-30334197 MS.gene031673:CDS 35.0%
TCTTGCATCCAAACCTTAAA+TGG + chr4.3:30337327-30337346 None:intergenic 35.0%
TGATGCATCAGTATCATCTT+GGG - chr4.3:30337953-30337972 MS.gene031673:intron 35.0%
TGTTAATTCACTACTGCAGA+TGG + chr4.3:30337668-30337687 None:intergenic 35.0%
TTCATGTTGCTGAAGTCTAA+AGG + chr4.3:30334990-30335009 None:intergenic 35.0%
TTGAATAACATGGTCAGAAG+TGG - chr4.3:30334960-30334979 MS.gene031673:intron 35.0%
TTTCTCAAGTTTACCCTTGT+TGG - chr4.3:30335327-30335346 MS.gene031673:intron 35.0%
! ACTTTTGACCGGTTGTTTAA+AGG + chr4.3:30335202-30335221 None:intergenic 35.0%
! CATTTTCTCCTTCAAGAGTA+GGG + chr4.3:30334250-30334269 None:intergenic 35.0%
! CATTTTTGTAGGAGAAGATG+TGG - chr4.3:30335041-30335060 MS.gene031673:intron 35.0%
! CTTTTGACCGGTTGTTTAAA+GGG + chr4.3:30335201-30335220 None:intergenic 35.0%
! GAGGGAGTAGTTTTTAACAA+TGG + chr4.3:30335231-30335250 None:intergenic 35.0%
! GATTATGGTGTTTTCCAACA+AGG + chr4.3:30335344-30335363 None:intergenic 35.0%
! TTGCGGTTTTTCTATTGGAT+TGG - chr4.3:30336853-30336872 MS.gene031673:intron 35.0%
! TTTACCTGTTTTATGCCAAC+GGG + chr4.3:30337830-30337849 None:intergenic 35.0%
! TTTGTGGTTTCGGTTTGAAT+TGG - chr4.3:30336824-30336843 MS.gene031673:intron 35.0%
! TTTTGACCGGTTGTTTAAAG+GGG + chr4.3:30335200-30335219 None:intergenic 35.0%
!! GCATTTGGTTTGGATGTATT+CGG + chr4.3:30336799-30336818 None:intergenic 35.0%
!! GTTTATTGGATTGGTTTGTG+CGG - chr4.3:30336165-30336184 MS.gene031673:intron 35.0%
!! TTTATTGGATTGGTTTGTGC+GGG - chr4.3:30336166-30336185 MS.gene031673:intron 35.0%
!!! AAACCAAATGCGGTTTTTTG+TGG - chr4.3:30336808-30336827 MS.gene031673:intron 35.0%
!!! AATGCGGTTTTTTGTGGTTT+CGG - chr4.3:30336814-30336833 MS.gene031673:intron 35.0%
!!! AGGATGCTTTTTAAGGTTGA+TGG - chr4.3:30337576-30337595 MS.gene031673:intron 35.0%
!!! ATCACTCATTTTGAAGTGTC+GGG - chr4.3:30335902-30335921 MS.gene031673:intron 35.0%
!!! CATCACTCATTTTGAAGTGT+CGG - chr4.3:30335901-30335920 MS.gene031673:intron 35.0%
!!! GGGTTCATAGATTTTTTTGG+TGG - chr4.3:30335924-30335943 MS.gene031673:intron 35.0%
AACATTTGGAAGCAAAGGTG+AGG - chr4.3:30334183-30334202 MS.gene031673:CDS 40.0%
AGTGGGAATGAGGTAATCAA+TGG - chr4.3:30338105-30338124 MS.gene031673:intron 40.0%
ATCAGACCCCTTTAAACAAC+CGG - chr4.3:30335191-30335210 MS.gene031673:intron 40.0%
CAAAACCAAGTTTCAGTGAC+CGG + chr4.3:30337034-30337053 None:intergenic 40.0%
CCTACTCTTGAAGGAGAAAA+TGG - chr4.3:30334248-30334267 MS.gene031673:intron 40.0%
GGGATGAACTCATCAATTAG+AGG + chr4.3:30334230-30334249 None:intergenic 40.0%
GGTGGAATTAATGACTTACC+TGG - chr4.3:30334113-30334132 MS.gene031673:CDS 40.0%
GTGATGCATCAGTATCATCT+TGG - chr4.3:30337952-30337971 MS.gene031673:intron 40.0%
TCATATCAAAGGGCAAGATC+AGG - chr4.3:30333748-30333767 MS.gene031673:CDS 40.0%
TCTTCAGGAGTAAGCAAAGA+TGG - chr4.3:30337706-30337725 MS.gene031673:CDS 40.0%
TGATAACAAATCTGGGTGGA+GGG + chr4.3:30337078-30337097 None:intergenic 40.0%
TTGATCAAGGGAACCAACAT+AGG - chr4.3:30338184-30338203 MS.gene031673:CDS 40.0%
! AAAAGTACATTCGGATCACG+AGG - chr4.3:30337792-30337811 MS.gene031673:intron 40.0%
! AGCTCTTGGCACAAGTTTTA+AGG + chr4.3:30335468-30335487 None:intergenic 40.0%
! CCATTTTCTCCTTCAAGAGT+AGG + chr4.3:30334251-30334270 None:intergenic 40.0%
! GGTTTCGGTTTGAATTGGTT+CGG - chr4.3:30336829-30336848 MS.gene031673:intron 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG + chr4.3:30335994-30336013 None:intergenic 40.0%
! TTGATAACAAATCTGGGTGG+AGG + chr4.3:30337079-30337098 None:intergenic 40.0%
!! ATATAAACTAGGGGTGTTCG+CGG - chr4.3:30336032-30336051 MS.gene031673:intron 40.0%
!! GATCTTTAGAGCATAGACGT+CGG + chr4.3:30336940-30336959 None:intergenic 40.0%
!! GTTTGAATTGGTTCGGTTTG+CGG - chr4.3:30336836-30336855 MS.gene031673:intron 40.0%
!! TACAACCGTATGGTTTGGTT+CGG + chr4.3:30336764-30336783 None:intergenic 40.0%
!! TCGGTTTGCGGTTTTTCTAT+TGG - chr4.3:30336848-30336867 MS.gene031673:intron 40.0%
!! TCTTATGTTGCGGTTTGGTT+CGG - chr4.3:30336706-30336725 MS.gene031673:intron 40.0%
!!! CGGGGGTTCATAGATTTTTT+TGG - chr4.3:30335921-30335940 MS.gene031673:intron 40.0%
!!! TCACTCATTTTGAAGTGTCG+GGG - chr4.3:30335903-30335922 MS.gene031673:intron 40.0%
ACCAACTGAGCTAAGTTCAC+AGG - chr4.3:30335995-30336014 MS.gene031673:intron 45.0%
ACTCATCCAGAGAAACTACC+AGG - chr4.3:30334281-30334300 MS.gene031673:intron 45.0%
AGGTTTGGATGCAAGACATG+TGG - chr4.3:30337331-30337350 MS.gene031673:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG - chr4.3:30337285-30337304 MS.gene031673:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG + chr4.3:30337304-30337285 None:intergenic 45.0%
CAAACTCAACCAAGACAGTG+TGG - chr4.3:30338027-30338046 MS.gene031673:intron 45.0%
CAGTGAAATTCTCACTGGAG+AGG - chr4.3:30336640-30336659 MS.gene031673:intron 45.0%
CATCACAGTGGATGGAAGAA+AGG - chr4.3:30333691-30333710 MS.gene031673:CDS 45.0%
CCAACTGAGCTAAGTTCACA+GGG - chr4.3:30335996-30336015 MS.gene031673:intron 45.0%
CTAAACCGGTCACTGAAACT+TGG - chr4.3:30337026-30337045 MS.gene031673:intron 45.0%
CTCTCCAGTGAGAATTTCAC+TGG + chr4.3:30336642-30336661 None:intergenic 45.0%
GAAACCCGTTGGCATAAAAC+AGG - chr4.3:30337823-30337842 MS.gene031673:intron 45.0%
GAACATATGTCACCTAGACC+AGG + chr4.3:30336674-30336693 None:intergenic 45.0%
GAATTACCACCACACTGTCT+TGG + chr4.3:30338039-30338058 None:intergenic 45.0%
GAGTTCATCCCTACTCTTGA+AGG - chr4.3:30334239-30334258 MS.gene031673:intron 45.0%
GCAAACCGAACCAAACCATA+CGG - chr4.3:30336756-30336775 MS.gene031673:intron 45.0%
GCATCCAGTGAAATTCTCAC+TGG - chr4.3:30336635-30336654 MS.gene031673:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG + chr4.3:30335995-30336014 None:intergenic 45.0%
TGATCCGCCATTTCTTTCAC+CGG - chr4.3:30337731-30337750 MS.gene031673:CDS 45.0%
TGTTCCTGTTGTGTATGCCT+TGG + chr4.3:30337761-30337780 None:intergenic 45.0%
TTGAATGGAGAGGATCTCAC+TGG + chr4.3:30336549-30336568 None:intergenic 45.0%
! AATATTGGTCTAGGTGGGAG+GGG - chr4.3:30336499-30336518 MS.gene031673:intron 45.0%
! GAATATTGGTCTAGGTGGGA+GGG - chr4.3:30336498-30336517 MS.gene031673:intron 45.0%
! GAGCATTGCTAGACCTATGT+TGG + chr4.3:30338200-30338219 None:intergenic 45.0%
! TGAATATTGGTCTAGGTGGG+AGG - chr4.3:30336497-30336516 MS.gene031673:intron 45.0%
!! CGGTTTGGTTCGGTTTAGTT+CGG - chr4.3:30336716-30336735 MS.gene031673:intron 45.0%
!! GTATGGTTTGGTTCGGTTTG+CGG + chr4.3:30336757-30336776 None:intergenic 45.0%
!! TGCGGTTTAGTTCGGTTTTG+AGG - chr4.3:30336055-30336074 MS.gene031673:intron 45.0%
!!! CACTCATTTTGAAGTGTCGG+GGG - chr4.3:30335904-30335923 MS.gene031673:intron 45.0%
!! AAACATTTATAATTATTAAA+AGG - chr4.3:30336582-30336601 MS.gene031673:intron 5.0%
!! AACATTTATAATTATTAAAA+GGG - chr4.3:30336583-30336602 MS.gene031673:intron 5.0%
!!! AATATGAATTTTTATATTTT+TGG + chr4.3:30334699-30334718 None:intergenic 5.0%
!!! TAATTTATAAATGATATTTT+AGG + chr4.3:30335640-30335659 None:intergenic 5.0%
ACTCAACCAAGACAGTGTGG+TGG - chr4.3:30338030-30338049 MS.gene031673:intron 50.0%
ATGGCCGGTGAAAGAAATGG+CGG + chr4.3:30337738-30337757 None:intergenic 50.0%
ATGTCACCTAGACCAGGACT+TGG + chr4.3:30336668-30336687 None:intergenic 50.0%
CCATCCAAGGCATACACAAC+AGG - chr4.3:30337754-30337773 MS.gene031673:CDS 50.0%
CCCTGTGAACTTAGCTCAGT+TGG + chr4.3:30335999-30336018 None:intergenic 50.0%
CCTGTTGTGTATGCCTTGGA+TGG + chr4.3:30337757-30337776 None:intergenic 50.0%
GAAGGGTCAAAGTGGGAATG+AGG - chr4.3:30338095-30338114 MS.gene031673:intron 50.0%
GGATCAAACTTCACTCCAGC+TGG + chr4.3:30334143-30334162 None:intergenic 50.0%
GTACATTCGGATCACGAGGA+CGG - chr4.3:30337796-30337815 MS.gene031673:intron 50.0%
TGGATGGCCGGTGAAAGAAA+TGG + chr4.3:30337741-30337760 None:intergenic 50.0%
TTGTGTATGCCTTGGATGGC+CGG + chr4.3:30337753-30337772 None:intergenic 50.0%
TTTCTTTCACCGGCCATCCA+AGG - chr4.3:30337741-30337760 MS.gene031673:CDS 50.0%
!! GGTGAAAGAAATGGCGGATC+AGG + chr4.3:30337732-30337751 None:intergenic 50.0%
ACTGGAGAGGATCCAAGTCC+TGG - chr4.3:30336653-30336672 MS.gene031673:intron 55.0%
AGGGGATTCTCTCCTGTGAC+TGG - chr4.3:30336517-30336536 MS.gene031673:intron 55.0%
CACTGGAACTCTCCAGTCAC+AGG + chr4.3:30336532-30336551 None:intergenic 55.0%
GACTTACCTGGATTGCCAGC+TGG - chr4.3:30334125-30334144 MS.gene031673:CDS 55.0%
GAGGATCCAAGTCCTGGTCT+AGG - chr4.3:30336659-30336678 MS.gene031673:intron 55.0%
GTTCGCGGTGCGGTTTAGTT+CGG - chr4.3:30336047-30336066 MS.gene031673:intron 55.0%
TTCACTCCAGCTGGCAATCC+AGG + chr4.3:30334134-30334153 None:intergenic 55.0%
AGGACGGAAGCGAAACCCGT+TGG - chr4.3:30337812-30337831 MS.gene031673:intron 60.0%
!! AACTAGGGGTGTTCGCGGTG+CGG - chr4.3:30336037-30336056 MS.gene031673:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 30333656 30338260 30333656 ID=MS.gene031673
chr4.3 mRNA 30333656 30338260 30333656 ID=MS.gene031673.t1;Parent=MS.gene031673
chr4.3 exon 30338147 30338260 30338147 ID=MS.gene031673.t1.exon1;Parent=MS.gene031673.t1
chr4.3 CDS 30338147 30338260 30338147 ID=cds.MS.gene031673.t1;Parent=MS.gene031673.t1
chr4.3 exon 30337614 30337806 30337614 ID=MS.gene031673.t1.exon2;Parent=MS.gene031673.t1
chr4.3 CDS 30337614 30337806 30337614 ID=cds.MS.gene031673.t1;Parent=MS.gene031673.t1
chr4.3 exon 30333656 30334203 30333656 ID=MS.gene031673.t1.exon3;Parent=MS.gene031673.t1
chr4.3 CDS 30333656 30334203 30333656 ID=cds.MS.gene031673.t1;Parent=MS.gene031673.t1
Gene Sequence

>MS.gene031673

ATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGGCAAGATCAGGTTCCTTAATTAAAACTTGGTTTGCCATGATAAACATTATTTATCATTACATTATTACTATTTATTTTTAATCTCTATAAATTTAGTCTCTGCATAATTATGTTAATTTTAGTCCTTATTTTAATTTTATAGGGACTAAATTTAATGACTAGGTCAAAAAAATATATTAATGTTTTGTAAAGATAATAACAGTAGATACTAAAATTATATAAAATTTATGTAGAGACTAAATTAAAAAGTGGTAATTTTATACTCCTAGAAACTAATAACTTTTTTTTCTTTTAGTTTGGAGTATTTGTGAAATATAAATGCTAAAGTGATATCAATGAAAAATAATTAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAGGTGAGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGTATATATTACATACAATACAAGCTATCAACTACATTTCTTGTCTTAATTTCAGACGAGTCTTATAACTCTTTTTTTTTTTTTTTTTGACAAACGAGTCTTATAACTCTAATAAGTTTACCTTTTATTTTAGGTTAAATATGTTTTTGTTCCTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAATTTTCTTTTTAGTTCCTCTAAAATTTTCCTTCAACTTTTAGTACCTATAAAATTTTCAATCACCATTTTTTGTCCCTATTTTTAAGCCAACTTATGTATATTTTAATGTAATTGTGTAGAAATGGGTATTATATTATAAAAATCTCTCCAATATCAATTTTTAACTGCCAAAAATATAAAAATTCATATTTAATTTATTGTTAAAAAATTCTATTTTCTTTTTGTGCGTGGTTCTTATAATATCATAAATTTTTTGCAAAATTTTATTAAATAATATAAATTCTACATATGAGTTTACTTAAAATGATGGAACAAAAGTGAAAACGGAAATTTTTTGAAGGGCTAAAAGTGAAATTTATTTTTAGAGGGACTAAAATAAAAATATTGTATATTTATTAAGACTAAAAACATATTTAAGCATTTTATTTTCATTGAATAACATGGTCAGAAGTGGTTTACCTTTAGACTTCAGCAACATGAAAAAGAAGAAAGCAGTTGTTTCGTTGAAGTAACATTTTTGTAGGAGAAGATGTGGCCATTTATGCTAATTAAATCACATTCATCCTTCTCTATCATTTTAATTTCAAATAAAAATTAACATTTCAATATTCAGGCTAATAATAATGGTTAAGAGGGATAATTGATGATGTTTTTTTTAAGGGATCAGACCCCTTTAAACAACCGGTCAAAAGTTCTAATCCATTGTTAAAAACTACTCCCTCCATTCATTTTCTTTTGATGTTTTAGAGTTTCAATTATATTCCAAAACTTTTGATGTTTTAGTGAATTTATTATTGTTTTCTCAAGTTTACCCTTGTTGGAAAACACCATAATCTATTAAAGTAGTTGTGACTTTTGGTTTATCACATGCGAATTTAATGATAAATAAGGACATTTTAGTCAAAAACACATAAATATTTATATATTTTAATTACTCCTTAAAACTTGTGCCAAGAGCTAAAACATCAAAAGAAAAGGAATGGAGGGAGTAATAAAGAAAAATCATACTCCCTTGTCTATTTTTATAAGCACTTTTTAGTCTTTATTTTTTTATTTATTAAGAAAAGTGTTTAGTGAATTTAATATGTACATTTAGAATGTAGATCTTCCTAAAATATCATTTATAAATTATATATATTAGTATGTGACTTTAACTTTTCATTTTTCAAGATAAATTAATAAAAGGTATGTTTGAAAAAATAATAATAAGTAAACCTAATAATTCTTATAATCTTAGCCAATTTATTGAAAAATAGTTTTTCAATACTTGTAAGATACTTCTAAGAGAGTATCATAAAAATATAAGATCTACCATGTATCTTACTTAATAAAAAAAAACAAAGAAAGATCTACCATGTATCTGACACGAATACATCACTCATTTTGAAGTGTCGGGGGTTCATAGATTTTTTTGGTGGTGTCTGAGATTCGAATCTCGAACATTGCATATATTATGCAAGGTCCCTACCAACTGAGCTAAGTTCACAGGGATAAGATTCATTGATATAAACTAGGGGTGTTCGCGGTGCGGTTTAGTTCGGTTTTGAGGCTAAAAGTCATCCGAACTGCAAGATGAAAAAACATGTGGTTTGAATTCAGTTGAATTTTAAAATAAAATTCAAACCAAACAAATGCGGTTTATTGGATTGGTTTGTGCGGGTTTTTTTAGACAATACAATTTTTTGTTTCCAACATTAAAATCGAGTTAAAAAGCTATAATATAACATATTTTCAACAATGTTTCTGACAATGATTTAAATTTAATCCAACATTACAATTTTATTTTCATAAAACAATAGAGACTAAATTAAAAACGTGGACAAAAAATATCCTATAATGTAAGAAATGTAAACGACTAATTCTATAAAATTTCAAGTAGCACATAAATACATTTTCTAAATACAAAGCAAAGAAGAAACTTAACAAAAGAAAAAATATGTCATTTTAAAAATTTCCATTAAGTTTATATGAATATTGGTCTAGGTGGGAGGGGATTCTCTCCTGTGACTGGAGAGTTCCAGTGAGATCCTCTCCATTCAATTTTTTTAATTGCAAACATTTATAATTATTAAAAGGGTAACTAAAGGTTCAGATTTTCACTGCAGAGCATCCAGTGAAATTCTCACTGGAGAGGATCCAAGTCCTGGTCTAGGTGACATATGTTCAATTAGTATTTTTCTTATGTTGCGGTTTGGTTCGGTTTAGTTCGGTTAATAAGATACAAACCGCAAACCGAACCAAACCATACGGTTGTATAAAAAAGAAATCCGAATACATCCAAACCAAATGCGGTTTTTTGTGGTTTCGGTTTGAATTGGTTCGGTTTGCGGTTTTTCTATTGGATTGGTTCGGTTTTGAACACCCCTAAATTATAAACCCATAACTCTACACTTTCAAACATTTTTGGACCGACGTCTATGCTCTAAAGATCCCTAATTTGATATTAGAGTTTGTACCCAAACTAAGATAAATAAAACTAAAGAATGGGGGATAAATTCTAAACCGGTCACTGAAACTTGGTTTTGTCAAATATCAATGAGGGCAGTCCCTCCACCCAGATTTGTTATCAAATTCATCACGGACATTATTCACTTAGCTTCAAATATACCCATGGCATTGCTATTTTAATGCCTATAAAATCAACAGAAAGTCAATATTGGTTCTCTAAAAAAAAGACAATATTGACATTTTACTATGTGGATGACTAGATTGAAATAATTCTACAAATTTAGTAATCAAGTTATGTATTTAATTTGAGTTCGGGTATGCTCCATTTAGGCTAATCTCCATTTACTCCATTTAAGGTTTGGATGCAAGACATGTGGCAAAAAAAATCTAACGGTTAAGTATAAATGGAGCTTAGCCTAAATGGAGCATACCCGAACTCATTTAATTTACTCAAAAAATTGGAGTGCAAGAAGTCCAAAGACTTGATTCCTTGAGTTCAAACTAATAGAAAAAGGACTACTTTCAAATCCAATTCACAATTAGACAAAAAAAAATTAACTAACAAAGAAAAATATCACATAGTACAAGACAAATAGTTTAGGATGCTTTTTAAGGTTGATGGTTGTATCTAACAATCCCATAACTTTGTACCTAGCTTCTTATTTATCAAGCTATTTTCACTGTATTACCATCTGCAGTAGTGAATTAACATCTAAATTGAATTATATTTCTTCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCGGATCACGAGGACGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAATTCCAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGGCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGGTCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA
Protein sequence

>MS.gene031673.t1

MTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKAEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP