AlfalfaGEDB | MS.gene031680

M. sativa cultivar XinJiangDaYe / MS.gene031680

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031680.t1	XP_003607509.2	82.7	427	68	4	1	424	1	424	7.80E-184	653.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031680.t1	Q9FFH0	44.0	445	163	22	1	420	1	384	1.4e-69	265.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031680.t1	G7JTX7	82.7	427	68	4	1	424	1	424	5.6e-184	653.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene031680.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031680.t1	MTR_4g078810	92.506	427	26	4	1	424	1	424	0.0	713
MS.gene031680.t1	MTR_2g090675	61.937	444	124	19	1	421	1	422	1.58e-155	446
MS.gene031680.t1	MTR_4g098870	35.789	285	140	9	145	421	299	548	1.72e-43	160
MS.gene031680.t1	MTR_4g098870	35.789	285	140	9	145	421	319	568	2.04e-43	160
MS.gene031680.t1	MTR_4g098870	35.789	285	140	9	145	421	338	587	2.81e-43	160
MS.gene031680.t1	MTR_5g014040	34.304	309	145	10	121	415	267	531	3.41e-42	156
MS.gene031680.t1	MTR_5g014040	33.758	314	145	11	121	415	227	496	4.21e-40	150
MS.gene031680.t1	MTR_5g014040	33.758	314	145	11	121	415	267	536	5.52e-40	150
MS.gene031680.t1	MTR_4g098870	38.776	147	77	3	137	275	291	432	2.67e-26	111
MS.gene031680.t1	MTR_4g098870	38.776	147	77	3	137	275	311	452	3.34e-26	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031680.t1	AT2G20570	45.714	455	179	21	1	423	1	419	3.83e-82	259
MS.gene031680.t1	AT2G20570	44.161	471	179	22	1	423	1	435	4.63e-78	249
MS.gene031680.t1	AT5G44190	41.573	445	174	16	1	420	1	384	8.08e-73	233
MS.gene031680.t1	AT5G44190	43.686	293	121	10	1	277	1	265	1.39e-60	201
MS.gene031680.t1	AT2G20570	36.645	453	176	21	1	423	1	372	1.45e-40	148
MS.gene031680.t1	AT4G18020	32.266	406	186	12	37	423	191	526	1.18e-35	138
MS.gene031680.t1	AT4G18020	32.266	406	186	12	37	423	191	526	1.18e-35	138
MS.gene031680.t1	AT4G18020	32.266	406	186	12	37	423	191	526	1.18e-35	138
MS.gene031680.t1	AT4G18020	32.266	406	186	12	37	423	191	526	1.18e-35	138
MS.gene031680.t1	AT4G18020	32.266	406	186	12	37	423	191	526	1.18e-35	138

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Find 128 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTGTTCGGGTCA+AGG	0.545941	4.3:-30405739	MS.gene031680:CDS
AAACCCATGGTGGGTGCAGC+TGG	0.319978	4.3:+30404446	None:intergenic
AAAGACTGGTCCATATTTGA+AGG	0.536097	4.3:+30404353	None:intergenic
AAATGGTGCAATGGTGCCAT+AGG	0.534447	4.3:+30404401	None:intergenic
AACATGCAGAGACCATCATT+TGG	0.489976	4.3:-30401972	MS.gene031680:intron
AACTTCGACGACTTCTTTGT+TGG	0.363264	4.3:-30405925	MS.gene031680:CDS
AAGCAGCAAGTTGGAATCAA+AGG	0.471928	4.3:-30404520	MS.gene031680:CDS
AAGCTGTTCGGGTCAAGGCT+CGG	0.557290	4.3:-30405734	MS.gene031680:CDS
AAGGGTCTAAAATGGTGCAA+TGG	0.690674	4.3:+30404392	None:intergenic
AATCAAAGGAGACAAGTATA+TGG	0.464153	4.3:-30404506	MS.gene031680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAGAGAAAGTCTTTCG+TGG	+	chr4.3:30404154-30404173	None:intergenic	30.0%
AATCAAAGGAGACAAGTATA+TGG	-	chr4.3:30402991-30403010	MS.gene031680:intron	30.0%
AATCCATTGTTAAAAGATGC+AGG	-	chr4.3:30401824-30401843	MS.gene031680:intron	30.0%
AATTAGTGTGTTTATTGTGC+AGG	-	chr4.3:30402567-30402586	MS.gene031680:intron	30.0%
AGGATTCAATTATATGTGGT+TGG	+	chr4.3:30404920-30404939	None:intergenic	30.0%
ATAATCTCCAAAATCCTTGA+AGG	+	chr4.3:30402664-30402683	None:intergenic	30.0%
ATACATGTAAGGGTCTAAAA+TGG	+	chr4.3:30403116-30403135	None:intergenic	30.0%
CCTATTTACGATGAATATAC+CGG	+	chr4.3:30402291-30402310	None:intergenic	30.0%
GCTTTCCAATAAATTTCCTT+CGG	+	chr4.3:30401549-30401568	None:intergenic	30.0%
TAAAAGCTCCATAGATTTCA+AGG	-	chr4.3:30405848-30405867	MS.gene031680:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	30401434	30406085	30401434	ID=MS.gene031680
chr4.3	mRNA	30401434	30406085	30401434	ID=MS.gene031680.t1;Parent=MS.gene031680
chr4.3	exon	30405612	30406085	30405612	ID=MS.gene031680.t1.exon1;Parent=MS.gene031680.t1
chr4.3	CDS	30405612	30406085	30405612	ID=cds.MS.gene031680.t1;Parent=MS.gene031680.t1
chr4.3	exon	30404790	30404930	30404790	ID=MS.gene031680.t1.exon2;Parent=MS.gene031680.t1
chr4.3	CDS	30404790	30404930	30404790	ID=cds.MS.gene031680.t1;Parent=MS.gene031680.t1
chr4.3	exon	30404253	30404585	30404253	ID=MS.gene031680.t1.exon3;Parent=MS.gene031680.t1
chr4.3	CDS	30404253	30404585	30404253	ID=cds.MS.gene031680.t1;Parent=MS.gene031680.t1
chr4.3	exon	30402236	30402298	30402236	ID=MS.gene031680.t1.exon4;Parent=MS.gene031680.t1
chr4.3	CDS	30402236	30402298	30402236	ID=cds.MS.gene031680.t1;Parent=MS.gene031680.t1
chr4.3	exon	30401875	30401985	30401875	ID=MS.gene031680.t1.exon5;Parent=MS.gene031680.t1
chr4.3	CDS	30401875	30401985	30401875	ID=cds.MS.gene031680.t1;Parent=MS.gene031680.t1
chr4.3	exon	30401434	30401586	30401434	ID=MS.gene031680.t1.exon6;Parent=MS.gene031680.t1
chr4.3	CDS	30401434	30401586	30401434	ID=cds.MS.gene031680.t1;Parent=MS.gene031680.t1

Gene Sequence

>MS.gene031680

ATGCTTGCAGTGTCACCATTGAGGAACACTAACAAAGATGGAAACCAAGAAGAGATGGAGAGTTTTTCGATGGGGAGTACTACAATTACAACGGGCGACTTCGGAGACCTTTCCGAAGGAAATTTATTGGAAAGCATCAACTTCGACGACTTCTTTGTTGGCATCAACGTCGATGGAGACATCTTACCGGATTTGGTAATGGATCCAGAGATGTTTGCTGAGTTCTCCGTTAGTTACGGCGAGGAATCAGAGATGAATTCTTCGGCGTCACTGGAGAACAATAGCAAAGTAGAAGAGAAGAATTCAAAGAAAGATTATGAGGATAAAACAAGCTGTTCGGGTCAAGGCTCGGAAGAGATAGCGAGTAAAAGAGATGAATCTGTGGTTGTGAATCCATTGTTAAAAGATGCAGGTGGAAAAGGAAGAAAATCATCGAGTAAATCTAAGAATCCTCAAGCGAAGAGAAAAGTCAAGGTATACTTAAATAAGGAAACTATAGAGTTTTATTCTTGCTAAGTGGTTTATCTTAATTTGGTAATTAAATTCAGTGTATCTAGAGTTCATCATGTGCAGTACTAACTTTTTAGCTAAGGTTCTGTTACTGTCTTCTTGTTACGACCCTTGACAAATTATAGAGACAGAATAAAACATGAAAGATTGCAACTGTTCAAAATTTCGCTGGTAATTTTATTTTTTTTTATAGTGCGTTGTATGTTTGGTATTATTATGTGACTTTGTCATGACAAATTCATCGTGATATTCATACTAGCAATTATTAAAAAAATGTTAGCAGTGGTAGAGCTTCGAACTTTTTATAGCATTTTTTTTTCGGTTTTGTTAACAATTCAAATTTACCGGTATATTCATCGTAAATAGGATCTTCATCTCTAACGAGGCAATCCAAATATCCTCACAATTTATATATAAGTAATACTGCTATTATTATTAAATAGGAAATGTTAACGATTGAACTTAAATAGCAATTCTTTAAGAAACTTAAAGAAATAAAATTTTATGAATAATTTGCATATTACATGTCATGGAAATGAAAATATTTAATTTTTTTAAGAGTAATTTCTTGATTTGAAATCCTTAAAAAGTGCACGAGACACTCGTCAGGAAGATTCTTACGTAATTAGTGTGTTTATTGTGCAGGTGGATTGGACACCAGACTTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGAAATTGATTGTCTCACTCGCCATAACATTGCTAGTCACCTTCAGGTACATATGAATTTCAAGCATATAGGAGAAAAAGGAAATTAAATTGACATTTCGTTAATTGATTGATTGTTAAGTAAGAGTACTCGTACGATGTCTTTATGGAAAGTTATTTAAATTTTCAACTTACACTATTTATCAAGTTTTGATGGAAACTTATCACGAGTTCTAGAAGATTATATTGAGCATAATTTTTTGTTATTGCAGAAATATAGGTCACATAGAAAACATTTGCTAGCGCGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTATATGGTGGTGTAGGGGTGAAGAGGGAAGTGATCAGTCCATGGCCAGCTGCACCCACCATGGGTTTCCCCCCTCATCCTCCTCCTCCTCCTATGGCACCATTGCACCATTTTAGACCCTTACATGTATGGGGACATCCTTCAAATATGGACCAGTCTTTTCTGCACATGTGGCCTACACCGCAGCCACTCTCATGGACACCATCGGTAGCTCCTCCACCACCTCAAGATCCTTCATTTTGGCATTCTCACCACCAGCAGGTAGCTCTCTCTAACCACTGAAAATAGCAGCCAAATTCCCTATATATCTATCATTGTATAGTAATACTAATAATTAAGATTTTTTTTTGGACAAAAACTAACAATTAAGATTTTAAACTTTGGAAAAAGAACACCCTTAATTATTTCAGTTTGTACTCCCGCTGGTTTCATATATAAAAACAAAGGCAAATGTTAACTTGTGCCCCAAGGGCATATGCTAAAAAATTTAAAATAGAAATAAATGTCTTAAAAGATGTGCATTTAACTTTATTCAACTTTTTAAAGTTAACATTTTGTTCTTTTTCTATGCAAAACTTCTAATTTTAGATTCTTAACTTGTGCCCTAAGGGCACAAGATAACAAGACCCAAAAACAAATTATTGTTTAGGTTCATTGAATAATTAATATATCTAATTTATAATAAAGACAAGATATATTAATTATTCGAAGAAACTAAAAAAAAAATTATATATGAGATCGGAGAGAGTATTTGATAGGAAAATATACAATTTTTAGGAGGAACACTTACTTGGGCAAAGCCCAAATAACAATATTTGAGCACACACAAAACCCAAAAAAAATATTAAAAGAGAATAAACTTAAATGATATCAATTGATGTGATTTAAGTCCTCGTGAACTTAGCTCAGTTGGTAGGGACAACGCATGGTAATATGCAAGGTCCAGGGTTCAAACCCCGCAAGGTCCAGGGTTCAAACCCCGGACACCACCAAAAAATTGATGTGACTTAATATTTTTTGTTTAATGTTGTTAATTTCATACGAGTGTGTCCAAATAATATTTATTTGATGTGACTTAATATTTTTTGTTTAATGTTGTTAATTTCATACGAGTGTGTCCAAATAATATTTATTTAAGGTTGTGTCCACGAAAGACTTTCTCTAATTTTTGATGTGACTTAATATTTTTTGTTTAATGTTGTTAATTTCATACGAGTGTGTCCAAATAATATTTATTTAAGGTTGTGTCCACGAAAGACTTTCTCTAATTTTTATTTTTTAAGGTTGTGTCCACGAAAGACTTTCTCTAATTTTTATTTTTCTCCAATTTTTATATATACCATTTGTTCGTTATATTCAAAAATTGAAGTATATATTGATATACTTGTTTTTTAAATTAATAAAGTTAACGATAATTTTTATAAAGTAAAAAATTATTTGTCGACTTTTATATTTTAGGAAATATCATTTCATAAGAAAAAAAATAACATGTCATTGTTTATAAGAGTCATATTAAATTTTCTACATTTTATCATAAAAAATCATCAATATTCAGTATTATGAGTAATAAAAATTTAGAAAAAAATAAATTTTATTTTTCCCAAATGATATTTAGTTTTTTTTTGACAAGAAATGATATTTAGTTATTATAACTGTAAATGAAAGAAAATGATTTTTTTAAAAAAAATAATACATATTCAACTATTAAATTAAAGGCCAAACGTACTTGTACATATCGAATTTTCGAGTTAACAGTAAAAATTGTCATATATTATATATTTAACTACATATTATTTGTCATATATTATATATAAGGCATGAGAGAGTTTCTTGTAGCTAGTGATAATTTTGCATCCTAGAAAAAGATTTTAAAACAATTGCTATAATAATTAAACTATTTTTGATAATTTACCAACCACATATAATTGAATCCTTGTTCCCTCAAAAAAAAAAAAAATTTGAATCCTCGTCAAAAAAGAAGAAGAACTATGTACATATAATTCAATGATGTTATTTTCAAAAAATAAAATAAAAATTCAATGATGCTGTGTGAAAATCTTGTTTGTTATAAATCAAAATTCGAGGATACATATTAATAACTATACAAATGTTTACAACAAAAATATATTAAAATTAGATCTGATTAAAATTCACGTTAATTCTTTGATTCGTGTATCTAAAATGTGATGTATTTCACTATTTCTGTGATCAACAGACTCCGATAAACGCAATGATCCGGCCAGGAACACATTGTTTCCCACCACCTCTGACAACAGTGGTAACTATTCATTACATCACTTTACTATTTTGGAGCCATGCACGTTGTCTTCTACTCTGAATTTTGGATCCTTTTTAAAGATAAGATTGACAGTATACAAATTTTAGTATTGTCATATTTACCAACATATATAAATATAGCACATAATTATATATGTTGTCGTATATATATTTAGTCACAAACACATAACACAAATTATTCTCCAAATATAAGTTTGGCTGACCATAAAGGAAAATAACATAACATGCAGAGACCATCATTTGGATGTCCAATCCCCGGCATCCCACCACATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCTTCCTGCTCCCGGTCACTTCTTCGACTTCCCACCGGTACTGAATTTCCTTCGCCATACATACATACATGCATTCAACATCTTTTTTTCTTCAATTCTCTTTATTTAGTTTCCGGCCATATATTAAAAAGTTTCACATTGTATGAGAGACGATAAGGGCATGTGTTTATAAGGTGGGAGTCATTGCTCACTTTATAAGACGATTTTTTAACGATGAGTTAACCCCAATATAAAAACACCTAAAAGCTCCATAGATTTCAAGGCATGAGTAATTAGATGATTCGTTGTTTGTATGCTAATGTATTTTTATAAATTTATTTTACAGTCAAATGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCCTCATCATGCACTTGA

Protein sequence

>MS.gene031680.t1

MLAVSPLRNTNKDGNQEEMESFSMGSTTITTGDFGDLSEGNLLESINFDDFFVGINVDGDILPDLVMDPEMFAEFSVSYGEESEMNSSASLENNSKVEEKNSKKDYEDKTSCSGQGSEEIASKRDESVVVNPLLKDAGGKGRKSSSKSKNPQAKRKVKVDWTPDLHRRFVQAVEQLGVDKAVPSRILEIMEIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGVKREVISPWPAAPTMGFPPHPPPPPMAPLHHFRPLHVWGHPSNMDQSFLHMWPTPQPLSWTPSVAPPPPQDPSFWHSHHQQTPINAMIRPGTHCFPPPLTTVRPSFGCPIPGIPPHGMCKADHGISTLPAPGHFFDFPPSNESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT