Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031690.t1 | XP_003607493.1 | 95.5 | 134 | 6 | 0 | 1 | 134 | 1 | 134 | 7.70E-72 | 279.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031690.t1 | Q9ZWA1 | 84.1 | 82 | 12 | 1 | 53 | 133 | 75 | 156 | 1.8e-40 | 166.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031690.t1 | G7JTW1 | 95.5 | 134 | 6 | 0 | 1 | 134 | 1 | 134 | 5.6e-72 | 279.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene031690.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031690.t1 | MTR_4g078660 | 95.522 | 134 | 6 | 0 | 1 | 134 | 1 | 134 | 1.01e-84 | 251 |
MS.gene031690.t1 | MTR_2g090605 | 57.595 | 158 | 36 | 6 | 1 | 134 | 1 | 151 | 1.49e-52 | 171 |
MS.gene031690.t1 | MTR_6g090380 | 70.652 | 92 | 25 | 1 | 43 | 134 | 88 | 177 | 2.10e-45 | 152 |
MS.gene031690.t1 | MTR_8g102100 | 75.309 | 81 | 20 | 0 | 54 | 134 | 75 | 155 | 5.30e-45 | 150 |
MS.gene031690.t1 | MTR_3g103960 | 66.279 | 86 | 28 | 1 | 56 | 140 | 49 | 134 | 5.66e-41 | 138 |
MS.gene031690.t1 | MTR_7g092070 | 67.089 | 79 | 26 | 0 | 56 | 134 | 260 | 338 | 2.19e-37 | 134 |
MS.gene031690.t1 | MTR_5g071070 | 60.759 | 79 | 31 | 0 | 56 | 134 | 144 | 222 | 5.41e-36 | 130 |
MS.gene031690.t1 | MTR_5g071070 | 60.759 | 79 | 31 | 0 | 56 | 134 | 226 | 304 | 1.24e-35 | 129 |
MS.gene031690.t1 | MTR_3g029590 | 63.291 | 79 | 29 | 0 | 56 | 134 | 260 | 338 | 1.52e-35 | 129 |
MS.gene031690.t1 | MTR_1g050438 | 62.821 | 78 | 29 | 0 | 56 | 133 | 224 | 301 | 2.80e-35 | 128 |
MS.gene031690.t1 | MTR_0728s0020 | 62.821 | 78 | 29 | 0 | 56 | 133 | 240 | 317 | 3.77e-35 | 128 |
MS.gene031690.t1 | MTR_5g082830 | 62.025 | 79 | 30 | 0 | 56 | 134 | 213 | 291 | 4.07e-35 | 128 |
MS.gene031690.t1 | MTR_3g070880 | 40.602 | 133 | 73 | 2 | 8 | 134 | 105 | 237 | 3.35e-32 | 119 |
MS.gene031690.t1 | MTR_1g075890 | 56.962 | 79 | 34 | 0 | 56 | 134 | 225 | 303 | 7.78e-32 | 119 |
MS.gene031690.t1 | MTR_3g435680 | 57.692 | 78 | 33 | 0 | 56 | 133 | 147 | 224 | 5.76e-31 | 114 |
MS.gene031690.t1 | MTR_3g435590 | 43.750 | 112 | 57 | 2 | 22 | 133 | 206 | 311 | 4.25e-29 | 110 |
MS.gene031690.t1 | MTR_3g464290 | 53.086 | 81 | 37 | 1 | 56 | 135 | 96 | 176 | 4.33e-28 | 107 |
MS.gene031690.t1 | MTR_3g464270 | 46.988 | 83 | 43 | 1 | 53 | 134 | 2 | 84 | 2.74e-22 | 90.5 |
MS.gene031690.t1 | MTR_3g464260 | 50.980 | 51 | 25 | 0 | 90 | 140 | 211 | 261 | 5.05e-15 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031690.t1 | AT1G03790 | 84.146 | 82 | 12 | 1 | 53 | 133 | 75 | 156 | 1.95e-48 | 160 |
MS.gene031690.t1 | AT5G44260 | 62.185 | 119 | 32 | 2 | 29 | 134 | 17 | 135 | 4.38e-46 | 154 |
MS.gene031690.t1 | AT4G29190 | 59.048 | 105 | 40 | 1 | 33 | 134 | 49 | 153 | 1.92e-44 | 149 |
MS.gene031690.t1 | AT2G25900 | 75.309 | 81 | 20 | 0 | 54 | 134 | 84 | 164 | 3.52e-44 | 147 |
MS.gene031690.t1 | AT2G25900 | 75.309 | 81 | 20 | 0 | 54 | 134 | 84 | 164 | 3.52e-44 | 147 |
MS.gene031690.t1 | AT2G19810 | 74.074 | 81 | 21 | 0 | 54 | 134 | 72 | 152 | 1.63e-43 | 146 |
MS.gene031690.t1 | AT2G41900 | 64.557 | 79 | 28 | 0 | 56 | 134 | 257 | 335 | 1.23e-36 | 132 |
MS.gene031690.t1 | AT5G12850 | 63.291 | 79 | 29 | 0 | 56 | 134 | 253 | 331 | 2.98e-36 | 131 |
MS.gene031690.t1 | AT5G58620 | 63.291 | 79 | 29 | 0 | 56 | 134 | 205 | 283 | 3.66e-36 | 130 |
MS.gene031690.t1 | AT5G07500 | 63.855 | 83 | 30 | 0 | 52 | 134 | 44 | 126 | 7.82e-36 | 124 |
MS.gene031690.t1 | AT2G40140 | 49.505 | 101 | 49 | 1 | 34 | 134 | 190 | 288 | 2.89e-34 | 125 |
MS.gene031690.t1 | AT2G40140 | 49.505 | 101 | 49 | 1 | 34 | 134 | 190 | 288 | 2.89e-34 | 125 |
MS.gene031690.t1 | AT3G55980 | 48.571 | 105 | 52 | 1 | 36 | 140 | 189 | 291 | 3.39e-34 | 125 |
MS.gene031690.t1 | AT3G55980 | 50.505 | 99 | 47 | 1 | 36 | 134 | 256 | 352 | 4.36e-34 | 125 |
Find 52 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCAGTGACGGCGGTGGAGG+TGG | 0.303772 | 4.3:+30511443 | None:intergenic |
CGGAAATGGTCGGAGGAATA+AGG | 0.321371 | 4.3:+30511402 | None:intergenic |
TGAATTACAATTGGAAATAG+AGG | 0.345150 | 4.3:+30510440 | None:intergenic |
TCCAGTCGTGGCTCCGGCTA+CGG | 0.353618 | 4.3:+30511349 | None:intergenic |
CAGTTTCCGCGGCGGTAATC+AGG | 0.356290 | 4.3:+30511246 | None:intergenic |
CGGTGGAGGTGGGTGAGCGG+CGG | 0.371274 | 4.3:+30511454 | None:intergenic |
AACAAGAATTGAATTACAAT+TGG | 0.379186 | 4.3:+30510431 | None:intergenic |
AATGCTGGTTGCACCCTTCA+AGG | 0.396871 | 4.3:-30511182 | MS.gene031690:intron |
TGAACTCGTACATTCGGAAA+TGG | 0.414832 | 4.3:+30511388 | None:intergenic |
CCAGTCGTGGCTCCGGCTAC+GGG | 0.415412 | 4.3:+30511350 | None:intergenic |
CGGCGGGTGAGTAGCTTCCT+TGG | 0.441619 | 4.3:+30511471 | None:intergenic |
GCTTCAGTTCTATACCTTGA+AGG | 0.441697 | 4.3:+30511168 | None:intergenic |
GGTGGAGGTGGGTGAGCGGC+GGG | 0.446091 | 4.3:+30511455 | None:intergenic |
TCCGGCTACGGGTGCATCGC+CGG | 0.451200 | 4.3:+30511361 | None:intergenic |
TTTCGCCCACCCGGGCGAAA+AGG | 0.454651 | 4.3:-30511316 | MS.gene031690:CDS |
TGACTGCCCTTTCGCCCACC+CGG | 0.455074 | 4.3:-30511325 | MS.gene031690:CDS |
CCCGTAGCCGGAGCCACGAC+TGG | 0.463023 | 4.3:-30511350 | MS.gene031690:CDS |
CGCCGCGTTCGCAGTTTCCG+CGG | 0.466468 | 4.3:+30511235 | None:intergenic |
CATGTCAGTGACGGCGGTGG+AGG | 0.473061 | 4.3:+30511440 | None:intergenic |
TCCATGATAGTGTCCCTTAG+AGG | 0.477718 | 4.3:+30511504 | None:intergenic |
AGTCAGTCCAGTCGTGGCTC+CGG | 0.493879 | 4.3:+30511343 | None:intergenic |
CCCTCTAAGGGACACTATCA+TGG | 0.499308 | 4.3:-30511505 | MS.gene031690:CDS |
TCAGTGACGGCGGTGGAGGT+GGG | 0.503377 | 4.3:+30511444 | None:intergenic |
TCCGGCGATGCACCCGTAGC+CGG | 0.506464 | 4.3:-30511362 | MS.gene031690:CDS |
TTTCGCCCGGGTGGGCGAAA+GGG | 0.507820 | 4.3:+30511319 | None:intergenic |
CGCCGCGGAAACTGCGAACG+CGG | 0.510281 | 4.3:-30511237 | MS.gene031690:CDS |
CTTCAGTTCTATACCTTGAA+GGG | 0.525702 | 4.3:+30511169 | None:intergenic |
GGGTGAGTAGCTTCCTTGGT+GGG | 0.529896 | 4.3:+30511475 | None:intergenic |
CGGGTGAGTAGCTTCCTTGG+TGG | 0.538038 | 4.3:+30511474 | None:intergenic |
GACTGCCCTTTCGCCCACCC+GGG | 0.552404 | 4.3:-30511324 | MS.gene031690:CDS |
CGGCGGTGGAGGTGGGTGAG+CGG | 0.570782 | 4.3:+30511451 | None:intergenic |
AACTCCGTGGGAGAATTCAC+AGG | 0.574194 | 4.3:+30511209 | None:intergenic |
GAATGTACGAGTTCAAAATC+CGG | 0.577680 | 4.3:-30511380 | MS.gene031690:CDS |
ACCGGAGTACTGATATCTGA+GGG | 0.579137 | 4.3:+30511278 | None:intergenic |
AAACATGTCAGTGACGGCGG+TGG | 0.580438 | 4.3:+30511437 | None:intergenic |
CCATGATAGTGTCCCTTAGA+GGG | 0.584116 | 4.3:+30511505 | None:intergenic |
CTCGTACATTCGGAAATGGT+CGG | 0.594163 | 4.3:+30511392 | None:intergenic |
CGCGTTCGCAGTTTCCGCGG+CGG | 0.608889 | 4.3:+30511238 | None:intergenic |
CCCCTCAGATATCAGTACTC+CGG | 0.612677 | 4.3:-30511279 | MS.gene031690:CDS |
AAGGGCAGTCAGTCCAGTCG+TGG | 0.612908 | 4.3:+30511337 | None:intergenic |
ATCGGAAAACATGTCAGTGA+CGG | 0.625042 | 4.3:+30511431 | None:intergenic |
GTAATCAGGACACACCTCAC+CGG | 0.640259 | 4.3:+30511260 | None:intergenic |
GAAGCCTGTGAATTCTCCCA+CGG | 0.645538 | 4.3:-30511213 | MS.gene031690:CDS |
CACCGGAGTACTGATATCTG+AGG | 0.653509 | 4.3:+30511277 | None:intergenic |
GGAGGAATAAGGATCCTCAT+CGG | 0.669248 | 4.3:+30511413 | None:intergenic |
GGAAAACATGTCAGTGACGG+CGG | 0.684057 | 4.3:+30511434 | None:intergenic |
GTACATTCGGAAATGGTCGG+AGG | 0.686456 | 4.3:+30511395 | None:intergenic |
CGGAGTACTGATATCTGAGG+GGG | 0.692681 | 4.3:+30511280 | None:intergenic |
GTGTGTCCTGATTACCGCCG+CGG | 0.700292 | 4.3:-30511252 | MS.gene031690:CDS |
CAGATATCAGTACTCCGGTG+AGG | 0.711287 | 4.3:-30511274 | MS.gene031690:CDS |
CCGGAGTACTGATATCTGAG+GGG | 0.714208 | 4.3:+30511279 | None:intergenic |
TCATGGACAACATCCCACCA+AGG | 0.739232 | 4.3:-30511488 | MS.gene031690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATTAATCCAATTCAATT+TGG | + | chr4.3:30511210-30511229 | None:intergenic | 15.0% |
!! | AAATATTATAATTCAAGTGG+TGG | - | chr4.3:30511266-30511285 | MS.gene031690:CDS | 20.0% |
!! | AATAATCCTAATTCTTCATT+GGG | - | chr4.3:30511236-30511255 | MS.gene031690:CDS | 20.0% |
!! | ATGATAATTATGTGAATTCA+TGG | - | chr4.3:30511432-30511451 | MS.gene031690:CDS | 20.0% |
!! | GGAAAATATTATAATTCAAG+TGG | - | chr4.3:30511263-30511282 | MS.gene031690:CDS | 20.0% |
!! | TGAATTTGAAGAAGAAAAAT+GGG | + | chr4.3:30511057-30511076 | None:intergenic | 20.0% |
!!! | CATTTTTTGTTGTTTTTTTG+AGG | + | chr4.3:30510972-30510991 | None:intergenic | 20.0% |
! | CAATAATCCTAATTCTTCAT+TGG | - | chr4.3:30511235-30511254 | MS.gene031690:CDS | 25.0% |
! | CTTAACATATGATCCTTAAT+TGG | - | chr4.3:30511536-30511555 | MS.gene031690:CDS | 25.0% |
! | GAATTTGAAGAAGAAAAATG+GGG | + | chr4.3:30511056-30511075 | None:intergenic | 25.0% |
! | GTGAATTTGAAGAAGAAAAA+TGG | + | chr4.3:30511058-30511077 | None:intergenic | 25.0% |
! | TACGTAATTAAGTGTAGATA+TGG | - | chr4.3:30511497-30511516 | MS.gene031690:CDS | 25.0% |
!!! | TTTTTGTTGTTTTTTTGAGG+AGG | + | chr4.3:30510969-30510988 | None:intergenic | 25.0% |
TAATGAGCTTATTCGTTCTA+TGG | - | chr4.3:30511127-30511146 | MS.gene031690:intron | 30.0% | |
TTGGAATTTGAATTGGACAA+AGG | + | chr4.3:30511092-30511111 | None:intergenic | 30.0% | |
TTTCTGCTTCCAAATTGAAT+TGG | - | chr4.3:30511198-30511217 | MS.gene031690:CDS | 30.0% | |
!! | CACATCTTTGGAATTTGAAT+TGG | + | chr4.3:30511099-30511118 | None:intergenic | 30.0% |
!! | TGTTTTTGAGAGATGAACAA+AGG | - | chr4.3:30511297-30511316 | MS.gene031690:CDS | 30.0% |
!!! | TCTATGGAGAGTTTTAACTT+TGG | - | chr4.3:30511143-30511162 | MS.gene031690:intron | 30.0% |
AATTGGACAAAGGTGACAAA+GGG | + | chr4.3:30511082-30511101 | None:intergenic | 35.0% | |
AGAACTGAAGCTTGTAAAGA+TGG | - | chr4.3:30510852-30510871 | MS.gene031690:intron | 35.0% | |
ATTAAGCACATGCACATCTT+TGG | + | chr4.3:30511111-30511130 | None:intergenic | 35.0% | |
CCACTTAACAAAGTAGAAGT+GGG | + | chr4.3:30511032-30511051 | None:intergenic | 35.0% | |
CCACTTCTACTTTGTTAAGT+GGG | - | chr4.3:30511030-30511049 | MS.gene031690:intron | 35.0% | |
CTTCAGTTCTATACCTTGAA+GGG | + | chr4.3:30510842-30510861 | None:intergenic | 35.0% | |
GAATGTACGAGTTCAAAATC+CGG | - | chr4.3:30510628-30510647 | MS.gene031690:intron | 35.0% | |
GAGAGATGAACAAAGGATTA+AGG | - | chr4.3:30511304-30511323 | MS.gene031690:CDS | 35.0% | |
TATAATTCAAGTGGTGGTAG+TGG | - | chr4.3:30511272-30511291 | MS.gene031690:CDS | 35.0% | |
TTCAATTTGGAAGCAGAAAC+AGG | + | chr4.3:30511197-30511216 | None:intergenic | 35.0% | |
! | AATGATGTCACACCAGATTT+TGG | - | chr4.3:30511335-30511354 | MS.gene031690:CDS | 35.0% |
! | AGTAAAACTCTAAGTTGACG+AGG | + | chr4.3:30510918-30510937 | None:intergenic | 35.0% |
! | ATGATGTCACACCAGATTTT+GGG | - | chr4.3:30511336-30511355 | MS.gene031690:CDS | 35.0% |
! | GGATTTTGAACTCGTACATT+CGG | + | chr4.3:30510629-30510648 | None:intergenic | 35.0% |
! | TGGTGATGATATTGTTCATG+AGG | - | chr4.3:30511163-30511182 | MS.gene031690:intron | 35.0% |
AGGTGTAAGAGAAGGAGAAA+GGG | + | chr4.3:30510949-30510968 | None:intergenic | 40.0% | |
ATCGGAAAACATGTCAGTGA+CGG | + | chr4.3:30510580-30510599 | None:intergenic | 40.0% | |
ATTGGACAAAGGTGACAAAG+GGG | + | chr4.3:30511081-30511100 | None:intergenic | 40.0% | |
CAAAAAGTCTCTCCCTCTAA+GGG | - | chr4.3:30510491-30510510 | MS.gene031690:intron | 40.0% | |
CCACAACCCAATGAAGAATT+AGG | + | chr4.3:30511245-30511264 | None:intergenic | 40.0% | |
CCCACTTAACAAAGTAGAAG+TGG | + | chr4.3:30511033-30511052 | None:intergenic | 40.0% | |
CCCACTTCTACTTTGTTAAG+TGG | - | chr4.3:30511029-30511048 | MS.gene031690:intron | 40.0% | |
GAATTGGACAAAGGTGACAA+AGG | + | chr4.3:30511083-30511102 | None:intergenic | 40.0% | |
GCTTCAGTTCTATACCTTGA+AGG | + | chr4.3:30510843-30510862 | None:intergenic | 40.0% | |
TCAAAAAGTCTCTCCCTCTA+AGG | - | chr4.3:30510490-30510509 | MS.gene031690:intron | 40.0% | |
TGAACTCGTACATTCGGAAA+TGG | + | chr4.3:30510623-30510642 | None:intergenic | 40.0% | |
! | CCTAATTCTTCATTGGGTTG+TGG | - | chr4.3:30511242-30511261 | MS.gene031690:CDS | 40.0% |
! | TAGAGGGAGAGACTTTTTGA+GGG | + | chr4.3:30510490-30510509 | None:intergenic | 40.0% |
! | TTAGAGGGAGAGACTTTTTG+AGG | + | chr4.3:30510491-30510510 | None:intergenic | 40.0% |
!! | TTTTGAGGAGGTGTAAGAGA+AGG | + | chr4.3:30510957-30510976 | None:intergenic | 40.0% |
ACCAGCATTCAAAAACTCCG+TGG | + | chr4.3:30510815-30510834 | None:intergenic | 45.0% | |
CCAGCATTCAAAAACTCCGT+GGG | + | chr4.3:30510814-30510833 | None:intergenic | 45.0% | |
CTCGTACATTCGGAAATGGT+CGG | + | chr4.3:30510619-30510638 | None:intergenic | 45.0% | |
GAGGCTAAGCAAGCCAATTA+AGG | + | chr4.3:30511552-30511571 | None:intergenic | 45.0% | |
GAGGTGTAAGAGAAGGAGAA+AGG | + | chr4.3:30510950-30510969 | None:intergenic | 45.0% | |
GGAGGAATAAGGATCCTCAT+CGG | + | chr4.3:30510598-30510617 | None:intergenic | 45.0% | |
GGTGTAAGAGAAGGAGAAAG+GGG | + | chr4.3:30510948-30510967 | None:intergenic | 45.0% | |
TCATTCACCCACCCAAAATC+TGG | + | chr4.3:30511350-30511369 | None:intergenic | 45.0% | |
TTGGACAAAGGTGACAAAGG+GGG | + | chr4.3:30511080-30511099 | None:intergenic | 45.0% | |
! | ATGTCACACCAGATTTTGGG+TGG | - | chr4.3:30511339-30511358 | MS.gene031690:CDS | 45.0% |
! | CACTGACATGTTTTCCGATG+AGG | - | chr4.3:30510581-30510600 | MS.gene031690:intron | 45.0% |
! | CCATGATAGTGTCCCTTAGA+GGG | + | chr4.3:30510506-30510525 | None:intergenic | 45.0% |
! | TCCATGATAGTGTCCCTTAG+AGG | + | chr4.3:30510507-30510526 | None:intergenic | 45.0% |
!! | ACCGGAGTACTGATATCTGA+GGG | + | chr4.3:30510733-30510752 | None:intergenic | 45.0% |
!! | GGAGAGACTTTTTGAGGGAA+AGG | + | chr4.3:30510485-30510504 | None:intergenic | 45.0% |
!! | TGTCACACCAGATTTTGGGT+GGG | - | chr4.3:30511340-30511359 | MS.gene031690:CDS | 45.0% |
AACTCCGTGGGAGAATTCAC+AGG | + | chr4.3:30510802-30510821 | None:intergenic | 50.0% | |
CAGATATCAGTACTCCGGTG+AGG | - | chr4.3:30510734-30510753 | MS.gene031690:intron | 50.0% | |
CCCCTCAGATATCAGTACTC+CGG | - | chr4.3:30510729-30510748 | MS.gene031690:intron | 50.0% | |
CGGAAATGGTCGGAGGAATA+AGG | + | chr4.3:30510609-30510628 | None:intergenic | 50.0% | |
GAAGCCTGTGAATTCTCCCA+CGG | - | chr4.3:30510795-30510814 | MS.gene031690:intron | 50.0% | |
GGAAAACATGTCAGTGACGG+CGG | + | chr4.3:30510577-30510596 | None:intergenic | 50.0% | |
GTAAGAGAAGGAGAAAGGGG+TGG | + | chr4.3:30510945-30510964 | None:intergenic | 50.0% | |
GTAATCAGGACACACCTCAC+CGG | + | chr4.3:30510751-30510770 | None:intergenic | 50.0% | |
GTACATTCGGAAATGGTCGG+AGG | + | chr4.3:30510616-30510635 | None:intergenic | 50.0% | |
TCATGGACAACATCCCACCA+AGG | - | chr4.3:30510520-30510539 | MS.gene031690:intron | 50.0% | |
! | AATGCTGGTTGCACCCTTCA+AGG | - | chr4.3:30510826-30510845 | MS.gene031690:intron | 50.0% |
! | CCCACGGAGTTTTTGAATGC+TGG | - | chr4.3:30510811-30510830 | MS.gene031690:intron | 50.0% |
! | CCCTCTAAGGGACACTATCA+TGG | - | chr4.3:30510503-30510522 | MS.gene031690:intron | 50.0% |
!! | CACCGGAGTACTGATATCTG+AGG | + | chr4.3:30510734-30510753 | None:intergenic | 50.0% |
!! | CCGGAGTACTGATATCTGAG+GGG | + | chr4.3:30510732-30510751 | None:intergenic | 50.0% |
!! | CGGAGTACTGATATCTGAGG+GGG | + | chr4.3:30510731-30510750 | None:intergenic | 50.0% |
AAACATGTCAGTGACGGCGG+TGG | + | chr4.3:30510574-30510593 | None:intergenic | 55.0% | |
GATATCTGAGGGGGTCACGA+CGG | + | chr4.3:30510722-30510741 | None:intergenic | 55.0% | |
GGGTGAGTAGCTTCCTTGGT+GGG | + | chr4.3:30510536-30510555 | None:intergenic | 55.0% | |
AAGGGCAGTCAGTCCAGTCG+TGG | + | chr4.3:30510674-30510693 | None:intergenic | 60.0% | |
AGTCAGTCCAGTCGTGGCTC+CGG | + | chr4.3:30510668-30510687 | None:intergenic | 60.0% | |
CAGTTTCCGCGGCGGTAATC+AGG | + | chr4.3:30510765-30510784 | None:intergenic | 60.0% | |
CGGGTGAGTAGCTTCCTTGG+TGG | + | chr4.3:30510537-30510556 | None:intergenic | 60.0% | |
GTGTGTCCTGATTACCGCCG+CGG | - | chr4.3:30510756-30510775 | MS.gene031690:intron | 60.0% | |
CATGTCAGTGACGGCGGTGG+AGG | + | chr4.3:30510571-30510590 | None:intergenic | 65.0% | |
CGGCGGGTGAGTAGCTTCCT+TGG | + | chr4.3:30510540-30510559 | None:intergenic | 65.0% | |
TCAGTGACGGCGGTGGAGGT+GGG | + | chr4.3:30510567-30510586 | None:intergenic | 65.0% | |
TCCAGTCGTGGCTCCGGCTA+CGG | + | chr4.3:30510662-30510681 | None:intergenic | 65.0% | |
TGACTGCCCTTTCGCCCACC+CGG | - | chr4.3:30510683-30510702 | MS.gene031690:intron | 65.0% | |
TTTCGCCCACCCGGGCGAAA+AGG | - | chr4.3:30510692-30510711 | MS.gene031690:intron | 65.0% | |
TTTCGCCCGGGTGGGCGAAA+GGG | + | chr4.3:30510692-30510711 | None:intergenic | 65.0% | |
! | TTTTCGCCCGGGTGGGCGAA+AGG | + | chr4.3:30510693-30510712 | None:intergenic | 65.0% |
CCAGTCGTGGCTCCGGCTAC+GGG | + | chr4.3:30510661-30510680 | None:intergenic | 70.0% | |
CGCCGCGGAAACTGCGAACG+CGG | - | chr4.3:30510771-30510790 | MS.gene031690:intron | 70.0% | |
CGCCGCGTTCGCAGTTTCCG+CGG | + | chr4.3:30510776-30510795 | None:intergenic | 70.0% | |
CGCGTTCGCAGTTTCCGCGG+CGG | + | chr4.3:30510773-30510792 | None:intergenic | 70.0% | |
GACTGCCCTTTCGCCCACCC+GGG | - | chr4.3:30510684-30510703 | MS.gene031690:intron | 70.0% | |
GTCAGTGACGGCGGTGGAGG+TGG | + | chr4.3:30510568-30510587 | None:intergenic | 70.0% | |
TCCGGCGATGCACCCGTAGC+CGG | - | chr4.3:30510646-30510665 | MS.gene031690:intron | 70.0% | |
TCCGGCTACGGGTGCATCGC+CGG | + | chr4.3:30510650-30510669 | None:intergenic | 70.0% | |
! | CGACGGCGTGCCTTTTCGCC+CGG | + | chr4.3:30510705-30510724 | None:intergenic | 70.0% |
! | GACGGCGTGCCTTTTCGCCC+GGG | + | chr4.3:30510704-30510723 | None:intergenic | 70.0% |
! | GCGTGCCTTTTCGCCCGGGT+GGG | + | chr4.3:30510700-30510719 | None:intergenic | 70.0% |
CCCGTAGCCGGAGCCACGAC+TGG | - | chr4.3:30510658-30510677 | MS.gene031690:intron | 75.0% | |
CGGCGGTGGAGGTGGGTGAG+CGG | + | chr4.3:30510560-30510579 | None:intergenic | 75.0% | |
CGGTGGAGGTGGGTGAGCGG+CGG | + | chr4.3:30510557-30510576 | None:intergenic | 75.0% | |
GGTGGAGGTGGGTGAGCGGC+GGG | + | chr4.3:30510556-30510575 | None:intergenic | 75.0% | |
! | GGCGTGCCTTTTCGCCCGGG+TGG | + | chr4.3:30510701-30510720 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 30510444 | 30511586 | 30510444 | ID=MS.gene031690 |
chr4.3 | mRNA | 30510444 | 30511586 | 30510444 | ID=MS.gene031690.t1;Parent=MS.gene031690 |
chr4.3 | exon | 30511183 | 30511586 | 30511183 | ID=MS.gene031690.t1.exon1;Parent=MS.gene031690.t1 |
chr4.3 | CDS | 30511183 | 30511586 | 30511183 | ID=cds.MS.gene031690.t1;Parent=MS.gene031690.t1 |
chr4.3 | exon | 30510444 | 30510462 | 30510444 | ID=MS.gene031690.t1.exon2;Parent=MS.gene031690.t1 |
chr4.3 | CDS | 30510444 | 30510462 | 30510444 | ID=cds.MS.gene031690.t1;Parent=MS.gene031690.t1 |
Gene Sequence |
Protein sequence |