AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03170.t1 MTR_1g031930 51.212 330 122 6 17 328 27 335 1.35e-97 293
MS.gene03170.t1 MTR_1g031930 48.387 279 113 8 68 328 9 274 1.30e-66 211
MS.gene03170.t1 MTR_2g029260 85.470 117 17 0 166 282 2 118 8.56e-54 172
MS.gene03170.t1 MTR_6g069870 33.155 374 171 14 24 331 2 362 5.25e-41 147
MS.gene03170.t1 MTR_6g069870 32.865 356 160 14 24 313 2 344 1.33e-35 132
MS.gene03170.t1 MTR_6g069870 34.708 291 161 12 24 302 2 275 4.29e-30 117
MS.gene03170.t1 MTR_2g042900 35.065 154 77 3 174 327 110 240 7.22e-16 76.6
MS.gene03170.t1 MTR_2g042900 34.000 150 86 4 174 313 110 256 4.06e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03170.t1 AT3G17860 33.611 360 164 17 9 332 6 326 8.46e-30 116
MS.gene03170.t1 AT3G17860 33.815 346 155 16 22 332 33 339 3.55e-29 115
MS.gene03170.t1 AT3G17860 33.819 343 153 16 25 332 3 306 1.11e-28 113
MS.gene03170.t1 AT3G17860 33.819 343 153 16 25 332 3 306 1.11e-28 113
MS.gene03170.t1 AT1G70700 38.559 236 98 8 91 320 50 244 1.51e-23 98.2
MS.gene03170.t1 AT1G70700 35.652 230 89 8 91 320 50 220 2.33e-22 94.4
MS.gene03170.t1 AT1G48500 31.613 310 157 13 25 329 34 293 2.56e-20 90.1
MS.gene03170.t1 AT1G70700 36.726 226 102 8 91 313 50 237 4.57e-20 89.0
MS.gene03170.t1 AT1G48500 30.717 293 149 12 25 313 4 246 3.34e-15 74.7
MS.gene03170.t1 AT1G48500 30.717 293 149 12 25 313 34 276 4.92e-15 74.7
MS.gene03170.t1 AT5G20900 29.560 159 70 4 164 320 45 163 3.94e-11 61.6

Find 94 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCTTGTTAATGTTATA+TGG 0.220633 2.1:-61994235 None:intergenic
TGAAACTGTATTAGCTTGAT+TGG 0.288636 2.1:-61992828 None:intergenic
TAGTAAAATTACTACGATTC+AGG 0.303233 2.1:-61992995 None:intergenic
ACATCATGTTGTACAGGATA+TGG 0.307686 2.1:-61992788 None:intergenic
TCCTGAGTGTTTAATTTCAT+TGG 0.307696 2.1:+61991460 MS.gene03170:CDS
GAGGAGGCTGGTGCATTTGC+AGG 0.320510 2.1:-61993635 None:intergenic
AGCAGATACTTTGTTGGAAA+AGG 0.357605 2.1:-61992109 None:intergenic
CATAAAACCAGCAGATGTTA+TGG 0.358564 2.1:-61992193 None:intergenic
CATATGAAGCTGCCACTACT+TGG 0.361235 2.1:+61992911 MS.gene03170:CDS
AGTATGCGATGAAATAGATA+TGG 0.369654 2.1:-61993672 None:intergenic
GGAGGCTCGGCATTGCTAAC+AGG 0.384286 2.1:-61993770 None:intergenic
TTTAACTGCGAGAAATTCAT+TGG 0.399647 2.1:-61993726 None:intergenic
GTTGGTTGAGGCGATGTAAC+AGG 0.403409 2.1:-61992941 None:intergenic
TTACTACAGTCAAATGCATC+TGG 0.414565 2.1:-61992219 None:intergenic
TGTAGGCTTCACAAAGGGTT+CGG 0.418966 2.1:+61992074 MS.gene03170:intron
CTCAGGAATGTTTGCATGCA+TGG 0.420076 2.1:-61991444 None:intergenic
TTTCTCGCAGTTAAAACAAC+TGG 0.425409 2.1:+61993734 MS.gene03170:CDS
AAGATGGTAAGTTGGGAAGA+AGG 0.425596 2.1:-61993126 None:intergenic
CATAGCACAGACAGAACTTC+AGG 0.434059 2.1:+61993583 MS.gene03170:CDS
CGCATAGAAGATGGTAAGTT+GGG 0.437429 2.1:-61993133 None:intergenic
TAGAAATCTTTCAATCATGA+TGG 0.440350 2.1:+61992737 MS.gene03170:intron
GGCACAAGCTATCCTGTTGT+TGG 0.441454 2.1:+61993532 MS.gene03170:intron
GCCATTACCATGCTGGCGTC+AGG 0.443156 2.1:+61993806 MS.gene03170:CDS
GTAGGCTTCACAAAGGGTTC+GGG 0.445204 2.1:+61992075 MS.gene03170:intron
CACCATTCCTAGCCAACAAC+AGG 0.452637 2.1:-61993544 None:intergenic
ATATCTATTTCATCGCATAC+TGG 0.462263 2.1:+61993674 MS.gene03170:CDS
GCAAATGCACCAGCCTCCTC+TGG 0.467713 2.1:+61993638 MS.gene03170:CDS
CCCACCATTGGTGCCGTCGT+TGG 0.469756 2.1:+61992968 MS.gene03170:CDS
TGAGTGTTTAATTTCATTGG+TGG 0.469768 2.1:+61991463 MS.gene03170:CDS
AAAACTCTCTGCTGAACCTC+AGG 0.473072 2.1:+61992242 MS.gene03170:CDS
GCAGATACTTTGTTGGAAAA+GGG 0.473482 2.1:-61992108 None:intergenic
TCGCATACTGGTGCACAGTC+AGG 0.473936 2.1:+61993686 MS.gene03170:CDS
ATAAAACCAGCAGATGTTAT+GGG 0.478111 2.1:-61992192 None:intergenic
TCTGATCCCATAACATCTGC+TGG 0.481214 2.1:+61992186 MS.gene03170:CDS
TGCATTTGCAGGTTGACTCA+CGG 0.482777 2.1:-61993624 None:intergenic
ATATGAAGCTGCCACTACTT+GGG 0.483843 2.1:+61992912 MS.gene03170:CDS
ACCTGACGCCAGCATGGTAA+TGG 0.485087 2.1:-61993807 None:intergenic
GTAATGGCATCGATTACTCT+TGG 0.489598 2.1:-61993791 None:intergenic
AAGAGAGATACCTTGTCGGC+AGG 0.494472 2.1:-61993183 None:intergenic
AGTTGGGAAGAAGGCAGAGA+TGG 0.495544 2.1:-61993117 None:intergenic
TCAGGCTCGGAAAGCATCCT+TGG 0.496291 2.1:+61993970 MS.gene03170:CDS
AGAAATCTTTCAATCATGAT+GGG 0.503355 2.1:+61992738 MS.gene03170:intron
AAGCTATCCTGTTGTTGGCT+AGG 0.504599 2.1:+61993537 MS.gene03170:CDS
ATCGATTACTCTTGGAGGCT+CGG 0.505842 2.1:-61993783 None:intergenic
CAACTTACCATCTTCTATGC+GGG 0.506683 2.1:+61993135 MS.gene03170:CDS
TCCAACGACGGCACCAATGG+TGG 0.507504 2.1:-61992969 None:intergenic
ATCTTCACATCATGTTGTAC+AGG 0.507813 2.1:-61992794 None:intergenic
GGCATTGCTAACAGGAGTGA+TGG 0.514325 2.1:-61993762 None:intergenic
TATGAAGCTGCCACTACTTG+GGG 0.520183 2.1:+61992913 MS.gene03170:CDS
CAACCAACTCTTCCCACCAT+TGG 0.522868 2.1:+61992956 MS.gene03170:CDS
CCGCATAGAAGATGGTAAGT+TGG 0.523235 2.1:-61993134 None:intergenic
GCATTTGCAGGTTGACTCAC+GGG 0.524091 2.1:-61993623 None:intergenic
GCAGTTACAAAATGATTCCT+CGG 0.526505 2.1:-61992866 None:intergenic
ATCCTGTTGTTGGCTAGGAA+TGG 0.530502 2.1:+61993542 MS.gene03170:CDS
AACAAAGAGAGATACCTTGT+CGG 0.533016 2.1:-61993187 None:intergenic
CTCACGGGCACACCGTCACC+AGG 0.540218 2.1:-61993608 None:intergenic
CAGTTACAAAATGATTCCTC+GGG 0.542977 2.1:-61992865 None:intergenic
TGGTTGAGCAGATACTTTGT+TGG 0.544131 2.1:-61992115 None:intergenic
GCACCAATGGTGGGAAGAGT+TGG 0.549558 2.1:-61992959 None:intergenic
GACGGTACCCGCATAGAAGA+TGG 0.552065 2.1:-61993142 None:intergenic
AGAGAGATACCTTGTCGGCA+GGG 0.552823 2.1:-61993182 None:intergenic
CTTGGATGACCAGAGGAGGC+TGG 0.553563 2.1:-61993647 None:intergenic
ATGCAGCGATACCTCAGGCT+CGG 0.560553 2.1:+61993957 MS.gene03170:intron
ATGGCATCGATTACTCTTGG+AGG 0.566283 2.1:-61993788 None:intergenic
GATGTCATTGAAAACATTGA+CGG 0.568358 2.1:-61993160 None:intergenic
CATTCCAACGACGGCACCAA+TGG 0.572081 2.1:-61992972 None:intergenic
AATCGATGCCATTACCATGC+TGG 0.572186 2.1:+61993799 MS.gene03170:CDS
ACCAATGAAATTAAACACTC+AGG 0.574760 2.1:-61991461 None:intergenic
CAGACAGAACTTCAGGCACC+TGG 0.577240 2.1:+61993590 MS.gene03170:CDS
ACTGGTGCACAGTCAGGCAG+TGG 0.578273 2.1:+61993692 MS.gene03170:CDS
GTATGCGATGAAATAGATAT+GGG 0.584760 2.1:-61993671 None:intergenic
CAATGACATCCCTGCCGACA+AGG 0.588647 2.1:+61993173 MS.gene03170:CDS
GAACTTCAGGCACCTGGTGA+CGG 0.589320 2.1:+61993596 MS.gene03170:CDS
GCATTGCTAACAGGAGTGAT+GGG 0.603727 2.1:-61993761 None:intergenic
TTCTAGAAAAGCGCAAGGAG+AGG 0.607349 2.1:+61993999 MS.gene03170:CDS
ACTGCTGGTCAGAATATGAA+TGG 0.611432 2.1:+61992884 MS.gene03170:CDS
GGCTAGGAATGGTGTATCAG+TGG 0.612360 2.1:+61993553 MS.gene03170:CDS
GATGAAATAGATATGGGACT+TGG 0.616222 2.1:-61993665 None:intergenic
TCTTTCAATCATGATGGGCA+AGG 0.623986 2.1:+61992743 MS.gene03170:CDS
CCAACGACGGCACCAATGGT+GGG 0.628134 2.1:-61992968 None:intergenic
CAGCATACCTGACGCCAGCA+TGG 0.631084 2.1:-61993813 None:intergenic
ACCTCAAAAGACATCAAATG+TGG 0.632234 2.1:-61992135 None:intergenic
CATTGACGAACTCATTCCCG+AGG 0.632457 2.1:+61992849 MS.gene03170:CDS
AAGGATGCTTTCCGAGCCTG+AGG 0.641286 2.1:-61993968 None:intergenic
TTCAATCATGATGGGCAAGG+TGG 0.642760 2.1:+61992746 MS.gene03170:CDS
CGATTCAGGCATTCCAACGA+CGG 0.643026 2.1:-61992981 None:intergenic
GTATGTGTAGGCTTCACAAA+GGG 0.645767 2.1:+61992069 MS.gene03170:intron
CAAAGGGTTCGGGTGCACAA+TGG 0.652681 2.1:+61992085 MS.gene03170:CDS
GGTATGTGTAGGCTTCACAA+AGG 0.665915 2.1:+61992068 MS.gene03170:intron
ATGAAGCTGCCACTACTTGG+GGG 0.671873 2.1:+61992914 MS.gene03170:CDS
CCAACTTACCATCTTCTATG+CGG 0.674088 2.1:+61993134 MS.gene03170:CDS
GGGACTTGGATGACCAGAGG+AGG 0.679930 2.1:-61993651 None:intergenic
TATGGGACTTGGATGACCAG+AGG 0.694039 2.1:-61993654 None:intergenic
ATGGTGGGAAGAGTTGGTTG+AGG 0.716568 2.1:-61992953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTACTTTTATAAAGAAA+AGG - chr2.1:61994037-61994056 None:intergenic 10.0%
!! AAATTATTAAATGTGTAGAA+TGG - chr2.1:61993922-61993941 None:intergenic 15.0%
!! ACTTAGTAGTATATTAATTA+AGG + chr2.1:61992577-61992596 MS.gene03170:intron 15.0%
!! CTTAGTAGTATATTAATTAA+GGG + chr2.1:61992578-61992597 MS.gene03170:intron 15.0%
!! TAAATAAATACAAGGTAAAA+AGG + chr2.1:61993227-61993246 MS.gene03170:intron 15.0%
!! TTTACCTTGTATTTATTTAT+AGG - chr2.1:61993226-61993245 None:intergenic 15.0%
!! ACATGTTTCTCATATAAAAA+TGG + chr2.1:61991802-61991821 MS.gene03170:intron 20.0%
!! AGATTGAAAAATTCACAATA+TGG - chr2.1:61992023-61992042 None:intergenic 20.0%
!! AGGAAAAAAATAATGAATTG+TGG - chr2.1:61993253-61993272 None:intergenic 20.0%
!! GATTTCTTGTTAATGTTATA+TGG - chr2.1:61994238-61994257 None:intergenic 20.0%
!! GTTTATGAACATTTAACATT+TGG + chr2.1:61992508-61992527 MS.gene03170:intron 20.0%
!!! AATCTATTTTTTATCCCTTA+AGG + chr2.1:61992038-61992057 MS.gene03170:intron 20.0%
!!! AGAATTGATTTTGAAATGTT+TGG - chr2.1:61991937-61991956 None:intergenic 20.0%
!!! CAGTTAGATTATTTTGTTTA+GGG + chr2.1:61993858-61993877 MS.gene03170:intron 20.0%
!!! TGTAACATTTTTTACATTGA+CGG + chr2.1:61992438-61992457 MS.gene03170:intron 20.0%
!!! TTTGTAAAATTGATTTTGAC+TGG + chr2.1:61991764-61991783 MS.gene03170:intron 20.0%
! AAAAGTAATGTGTGTAGAAA+TGG - chr2.1:61994087-61994106 None:intergenic 25.0%
! AATTGCAAACAAACAATAGA+AGG - chr2.1:61992711-61992730 None:intergenic 25.0%
! AGAAATCTTTCAATCATGAT+GGG + chr2.1:61992738-61992757 MS.gene03170:intron 25.0%
! CTTGTACTTGTTTAAATTTG+AGG - chr2.1:61992607-61992626 None:intergenic 25.0%
! CTTGTATAAGATATTCCTTA+AGG + chr2.1:61991595-61991614 MS.gene03170:intron 25.0%
! TAGAAATCTTTCAATCATGA+TGG + chr2.1:61992737-61992756 MS.gene03170:intron 25.0%
! TAGTAAAATTACTACGATTC+AGG - chr2.1:61992998-61993017 None:intergenic 25.0%
! TCTGCCTATAAATAAATACA+AGG + chr2.1:61993219-61993238 MS.gene03170:intron 25.0%
! TGTATTTATTTATAGGCAGA+AGG - chr2.1:61993219-61993238 None:intergenic 25.0%
! TTAATGCTAAGATCAATTGT+AGG + chr2.1:61991839-61991858 MS.gene03170:intron 25.0%
!! TTGAAATGTTTGGATCTTTT+CGG - chr2.1:61991927-61991946 None:intergenic 25.0%
!! TTTTTCGTTAACCAAGTTAT+TGG - chr2.1:61993465-61993484 None:intergenic 25.0%
!!! GCAGTTAGATTATTTTGTTT+AGG + chr2.1:61993857-61993876 MS.gene03170:intron 25.0%
AAACAATAGAAGGAAGTGAA+GGG - chr2.1:61992701-61992720 None:intergenic 30.0%
ACCAATGAAATTAAACACTC+AGG - chr2.1:61991464-61991483 None:intergenic 30.0%
ACCATCCTAGATTAGATTTA+AGG + chr2.1:61994057-61994076 MS.gene03170:intron 30.0%
ACTTGGTTAACGAAAAAACT+TGG + chr2.1:61993468-61993487 MS.gene03170:intron 30.0%
AGTATGCGATGAAATAGATA+TGG - chr2.1:61993675-61993694 None:intergenic 30.0%
ATAAAACCAGCAGATGTTAT+GGG - chr2.1:61992195-61992214 None:intergenic 30.0%
ATATCTATTTCATCGCATAC+TGG + chr2.1:61993674-61993693 MS.gene03170:CDS 30.0%
ATCAGTTTGACAAAATTTGG+TGG - chr2.1:61991672-61991691 None:intergenic 30.0%
CATTTAGTATTGTGTTTGCA+GGG + chr2.1:61994198-61994217 MS.gene03170:intron 30.0%
CCATCCTAGATTAGATTTAA+GGG + chr2.1:61994058-61994077 MS.gene03170:intron 30.0%
CTAACTGCAATAATGAGAAA+TGG - chr2.1:61993845-61993864 None:intergenic 30.0%
GATGTCATTGAAAACATTGA+CGG - chr2.1:61993163-61993182 None:intergenic 30.0%
GTATGCGATGAAATAGATAT+GGG - chr2.1:61993674-61993693 None:intergenic 30.0%
TCATTACCCTTCAATTTGAA+GGG - chr2.1:61994117-61994136 None:intergenic 30.0%
TTTAACTGCGAGAAATTCAT+TGG - chr2.1:61993729-61993748 None:intergenic 30.0%
TTTATCCCTTAAGGTTTAGT+GGG + chr2.1:61992047-61992066 MS.gene03170:intron 30.0%
! CCAAATTTTGTCAAACTGAT+CGG + chr2.1:61991672-61991691 MS.gene03170:intron 30.0%
! TCCTGAGTGTTTAATTTCAT+TGG + chr2.1:61991460-61991479 MS.gene03170:CDS 30.0%
! TGAAACTGTATTAGCTTGAT+TGG - chr2.1:61992831-61992850 None:intergenic 30.0%
! TGAGTGTTTAATTTCATTGG+TGG + chr2.1:61991463-61991482 MS.gene03170:CDS 30.0%
! TTTTACATTGACGGTGTATA+TGG + chr2.1:61992447-61992466 MS.gene03170:intron 30.0%
! TTTTATCCCTTAAGGTTTAG+TGG + chr2.1:61992046-61992065 MS.gene03170:intron 30.0%
!! TAGATGTTTGGTTTCACTTT+TGG - chr2.1:61991987-61992006 None:intergenic 30.0%
AACAAAGAGAGATACCTTGT+CGG - chr2.1:61993190-61993209 None:intergenic 35.0%
AACCAAACATCTACACTTAG+TGG + chr2.1:61991994-61992013 MS.gene03170:intron 35.0%
ACATACCCACTAAACCTTAA+GGG - chr2.1:61992055-61992074 None:intergenic 35.0%
ACATCATGTTGTACAGGATA+TGG - chr2.1:61992791-61992810 None:intergenic 35.0%
ACCATAGTCAAGCTTAATTG+TGG + chr2.1:61993496-61993515 MS.gene03170:intron 35.0%
ACCTCAAAAGACATCAAATG+TGG - chr2.1:61992138-61992157 None:intergenic 35.0%
AGATCAATTGTAGGAGTCAA+AGG + chr2.1:61991848-61991867 MS.gene03170:intron 35.0%
AGCAGATACTTTGTTGGAAA+AGG - chr2.1:61992112-61992131 None:intergenic 35.0%
ATCCACTAAGTGTAGATGTT+TGG - chr2.1:61991999-61992018 None:intergenic 35.0%
ATCTTCACATCATGTTGTAC+AGG - chr2.1:61992797-61992816 None:intergenic 35.0%
ATTAAGCTTGACTATGGTCA+AGG - chr2.1:61993494-61993513 None:intergenic 35.0%
CAAACAATAGAAGGAAGTGA+AGG - chr2.1:61992702-61992721 None:intergenic 35.0%
CAGTTACAAAATGATTCCTC+GGG - chr2.1:61992868-61992887 None:intergenic 35.0%
CATAAAACCAGCAGATGTTA+TGG - chr2.1:61992196-61992215 None:intergenic 35.0%
CATTACCCTTCAATTTGAAG+GGG - chr2.1:61994116-61994135 None:intergenic 35.0%
CCCTTAAATCTAATCTAGGA+TGG - chr2.1:61994061-61994080 None:intergenic 35.0%
CCGATCAGTTTGACAAAATT+TGG - chr2.1:61991675-61991694 None:intergenic 35.0%
CTCATTACCCTTCAATTTGA+AGG - chr2.1:61994118-61994137 None:intergenic 35.0%
CTTCAAATTGAAGGGTAATG+AGG + chr2.1:61994116-61994135 MS.gene03170:intron 35.0%
CTTGATCACCAACATTACAT+TGG + chr2.1:61993285-61993304 MS.gene03170:intron 35.0%
GATGAAATAGATATGGGACT+TGG - chr2.1:61993668-61993687 None:intergenic 35.0%
GCAGATACTTTGTTGGAAAA+GGG - chr2.1:61992111-61992130 None:intergenic 35.0%
GCAGTTACAAAATGATTCCT+CGG - chr2.1:61992869-61992888 None:intergenic 35.0%
GCATTTAGTATTGTGTTTGC+AGG + chr2.1:61994197-61994216 MS.gene03170:intron 35.0%
GTTGCCCTTAAATCTAATCT+AGG - chr2.1:61994065-61994084 None:intergenic 35.0%
TAGATGGATGGTGAATTTGA+TGG + chr2.1:61991630-61991649 MS.gene03170:intron 35.0%
TTACTACAGTCAAATGCATC+TGG - chr2.1:61992222-61992241 None:intergenic 35.0%
TTTCTCGCAGTTAAAACAAC+TGG + chr2.1:61993734-61993753 MS.gene03170:CDS 35.0%
! AATTGTGGCACTATTTCTTC+AGG + chr2.1:61993511-61993530 MS.gene03170:intron 35.0%
! ACCACATTTGATGTCTTTTG+AGG + chr2.1:61992134-61992153 MS.gene03170:CDS 35.0%
! AGGAATCATTTTGTAACTGC+TGG + chr2.1:61992869-61992888 MS.gene03170:CDS 35.0%
! GAATTGATTCAGCTTCAAGT+TGG - chr2.1:61991883-61991902 None:intergenic 35.0%
!! CAATGTAATGTTGGTGATCA+AGG - chr2.1:61993287-61993306 None:intergenic 35.0%
AAGGTCAGTGCATGTTTAGA+TGG + chr2.1:61991614-61991633 MS.gene03170:intron 40.0%
ACTGCTGGTCAGAATATGAA+TGG + chr2.1:61992884-61992903 MS.gene03170:CDS 40.0%
ATATGAAGCTGCCACTACTT+GGG + chr2.1:61992912-61992931 MS.gene03170:CDS 40.0%
ATGGGGAAAAAATGGTTGAG+AGG + chr2.1:61993367-61993386 MS.gene03170:intron 40.0%
CAACTTACCATCTTCTATGC+GGG + chr2.1:61993135-61993154 MS.gene03170:CDS 40.0%
CACATACCCACTAAACCTTA+AGG - chr2.1:61992056-61992075 None:intergenic 40.0%
CCAACTTACCATCTTCTATG+CGG + chr2.1:61993134-61993153 MS.gene03170:CDS 40.0%
CCAATCAGACTAGAATACAC+TGG - chr2.1:61992539-61992558 None:intergenic 40.0%
CCAGTGTATTCTAGTCTGAT+TGG + chr2.1:61992536-61992555 MS.gene03170:intron 40.0%
CGCATAGAAGATGGTAAGTT+GGG - chr2.1:61993136-61993155 None:intergenic 40.0%
GAATCAGAGACCTAGCTTAA+GGG - chr2.1:61993336-61993355 None:intergenic 40.0%
GCCACAATTAAGCTTGACTA+TGG - chr2.1:61993500-61993519 None:intergenic 40.0%
GGTATCGCTGCATAAAAGAT+TGG - chr2.1:61993950-61993969 None:intergenic 40.0%
GTAATGATCGACGATTAAGC+TGG + chr2.1:61992407-61992426 MS.gene03170:intron 40.0%
GTATGTGTAGGCTTCACAAA+GGG + chr2.1:61992069-61992088 MS.gene03170:intron 40.0%
TCAGTGCATGTTTAGATGGA+TGG + chr2.1:61991618-61991637 MS.gene03170:intron 40.0%
TGGTTGAGCAGATACTTTGT+TGG - chr2.1:61992118-61992137 None:intergenic 40.0%
! AAGATGGTAAGTTGGGAAGA+AGG - chr2.1:61993129-61993148 None:intergenic 40.0%
! AAGGTTTAGTGGGTATGTGT+AGG + chr2.1:61992057-61992076 MS.gene03170:intron 40.0%
! AGTTTAAAGCCTGAACAGCA+CGG - chr2.1:61992284-61992303 None:intergenic 40.0%
! CTAAACATGCACTGACCTTA+AGG - chr2.1:61991613-61991632 None:intergenic 40.0%
!! CTTTTCTAGAAAACGAGCCA+AGG - chr2.1:61993990-61994009 None:intergenic 40.0%
!! GTAATGGCATCGATTACTCT+TGG - chr2.1:61993794-61993813 None:intergenic 40.0%
!! TCGTTTTCTAGAAAAGCGCA+AGG + chr2.1:61993994-61994013 MS.gene03170:CDS 40.0%
!! TCTTTCAATCATGATGGGCA+AGG + chr2.1:61992743-61992762 MS.gene03170:CDS 40.0%
AAAACTCTCTGCTGAACCTC+AGG + chr2.1:61992242-61992261 MS.gene03170:CDS 45.0%
AAAGGGTAGCATCAAACCTG+AGG - chr2.1:61992261-61992280 None:intergenic 45.0%
AATCGATGCCATTACCATGC+TGG + chr2.1:61993799-61993818 MS.gene03170:CDS 45.0%
ATCGATTACTCTTGGAGGCT+CGG - chr2.1:61993786-61993805 None:intergenic 45.0%
CACTCGGACCAATGTAATGT+TGG - chr2.1:61993296-61993315 None:intergenic 45.0%
CATAGCACAGACAGAACTTC+AGG + chr2.1:61993583-61993602 MS.gene03170:CDS 45.0%
CATATGAAGCTGCCACTACT+TGG + chr2.1:61992911-61992930 MS.gene03170:CDS 45.0%
CATTGGTCCGAGTGAAAAAC+TGG + chr2.1:61993302-61993321 MS.gene03170:intron 45.0%
CCGCATAGAAGATGGTAAGT+TGG - chr2.1:61993137-61993156 None:intergenic 45.0%
CCTTGTGGATGGGGAAAAAA+TGG + chr2.1:61993359-61993378 MS.gene03170:intron 45.0%
CGAATCAGAGACCTAGCTTA+AGG - chr2.1:61993337-61993356 None:intergenic 45.0%
GCATTGCTAACAGGAGTGAT+GGG - chr2.1:61993764-61993783 None:intergenic 45.0%
GGTATGTGTAGGCTTCACAA+AGG + chr2.1:61992068-61992087 MS.gene03170:intron 45.0%
GGTGGATCACACCAATAACT+TGG + chr2.1:61993451-61993470 MS.gene03170:intron 45.0%
TATGAAGCTGCCACTACTTG+GGG + chr2.1:61992913-61992932 MS.gene03170:CDS 45.0%
TCCGAGTGAAAAACTGGACT+CGG + chr2.1:61993308-61993327 MS.gene03170:intron 45.0%
TCTGATCCCATAACATCTGC+TGG + chr2.1:61992186-61992205 MS.gene03170:CDS 45.0%
TGTAGGCTTCACAAAGGGTT+CGG + chr2.1:61992074-61992093 MS.gene03170:intron 45.0%
TTGCGCCCCTTCAAATTGAA+GGG + chr2.1:61994108-61994127 MS.gene03170:intron 45.0%
TTTGCGCCCCTTCAAATTGA+AGG + chr2.1:61994107-61994126 MS.gene03170:intron 45.0%
! AAGCTATCCTGTTGTTGGCT+AGG + chr2.1:61993537-61993556 MS.gene03170:CDS 45.0%
! AGACTAGTCGTCAGCAAAGT+CGG + chr2.1:61993430-61993449 MS.gene03170:intron 45.0%
! ATCCTGTTGTTGGCTAGGAA+TGG + chr2.1:61993542-61993561 MS.gene03170:CDS 45.0%
! CTTTTATGCAGCGATACCTC+AGG + chr2.1:61993952-61993971 MS.gene03170:intron 45.0%
! TCCGAGTCCAGTTTTTCACT+CGG - chr2.1:61993312-61993331 None:intergenic 45.0%
! TGCATTTGCAGGTTGACTCA+CGG - chr2.1:61993627-61993646 None:intergenic 45.0%
! TTCTAGAAAAGCGCAAGGAG+AGG + chr2.1:61993999-61994018 MS.gene03170:CDS 45.0%
!! ATGGCATCGATTACTCTTGG+AGG - chr2.1:61993791-61993810 None:intergenic 45.0%
!! CTGACGACTAGTCTCTGTTT+GGG - chr2.1:61993424-61993443 None:intergenic 45.0%
!! GTTGGTGATCAAGGTCAAGT+TGG - chr2.1:61993278-61993297 None:intergenic 45.0%
!! TGATCAAGGTCAAGTTGGCA+AGG - chr2.1:61993273-61993292 None:intergenic 45.0%
!! TTCAATCATGATGGGCAAGG+TGG + chr2.1:61992746-61992765 MS.gene03170:CDS 45.0%
!!! CCATTTTTTCCCCATCCACA+AGG - chr2.1:61993362-61993381 None:intergenic 45.0%
AAAGCCTGAACAGCACGGAA+AGG - chr2.1:61992279-61992298 None:intergenic 50.0%
AAGAGAGATACCTTGTCGGC+AGG - chr2.1:61993186-61993205 None:intergenic 50.0%
AAGCCTGAACAGCACGGAAA+GGG - chr2.1:61992278-61992297 None:intergenic 50.0%
ACAGGTATTCCCCCAAGTAG+TGG - chr2.1:61992926-61992945 None:intergenic 50.0%
AGAGAGATACCTTGTCGGCA+GGG - chr2.1:61993185-61993204 None:intergenic 50.0%
AGTTGGGAAGAAGGCAGAGA+TGG - chr2.1:61993120-61993139 None:intergenic 50.0%
ATGAAGCTGCCACTACTTGG+GGG + chr2.1:61992914-61992933 MS.gene03170:CDS 50.0%
CAACCAACTCTTCCCACCAT+TGG + chr2.1:61992956-61992975 MS.gene03170:CDS 50.0%
CACCATTCCTAGCCAACAAC+AGG - chr2.1:61993547-61993566 None:intergenic 50.0%
CATTGACGAACTCATTCCCG+AGG + chr2.1:61992849-61992868 MS.gene03170:CDS 50.0%
CGATTCAGGCATTCCAACGA+CGG - chr2.1:61992984-61993003 None:intergenic 50.0%
CTAGTCTCTGTTTGGGAGCA+TGG - chr2.1:61993417-61993436 None:intergenic 50.0%
GGCACAAGCTATCCTGTTGT+TGG + chr2.1:61993532-61993551 MS.gene03170:intron 50.0%
GGCATTGCTAACAGGAGTGA+TGG - chr2.1:61993765-61993784 None:intergenic 50.0%
GGCTAGGAATGGTGTATCAG+TGG + chr2.1:61993553-61993572 MS.gene03170:CDS 50.0%
GTAGGCTTCACAAAGGGTTC+GGG + chr2.1:61992075-61992094 MS.gene03170:intron 50.0%
GTTGGTTGAGGCGATGTAAC+AGG - chr2.1:61992944-61992963 None:intergenic 50.0%
TATGGGACTTGGATGACCAG+AGG - chr2.1:61993657-61993676 None:intergenic 50.0%
! ATGGTGGGAAGAGTTGGTTG+AGG - chr2.1:61992956-61992975 None:intergenic 50.0%
! CTGATTCGAGCCTTGTGGAT+GGG + chr2.1:61993349-61993368 MS.gene03170:intron 50.0%
! GCATTTGCAGGTTGACTCAC+GGG - chr2.1:61993626-61993645 None:intergenic 50.0%
! TCTGATTCGAGCCTTGTGGA+TGG + chr2.1:61993348-61993367 MS.gene03170:intron 50.0%
! TGATTCGAGCCTTGTGGATG+GGG + chr2.1:61993350-61993369 MS.gene03170:intron 50.0%
!! GCTGACGACTAGTCTCTGTT+TGG - chr2.1:61993425-61993444 None:intergenic 50.0%
AAGGATGCTTTCCGAGCCTG+AGG - chr2.1:61993971-61993990 None:intergenic 55.0%
ACACGCGCTAAGCGCATGTT+TGG - chr2.1:61991703-61991722 None:intergenic 55.0%
ACATGCGCTTAGCGCGTGTT+TGG + chr2.1:61991704-61991723 MS.gene03170:intron 55.0%
ACCTGACGCCAGCATGGTAA+TGG - chr2.1:61993810-61993829 None:intergenic 55.0%
AGGATAGATCCCGCTGAAGG+TGG + chr2.1:61993387-61993406 MS.gene03170:intron 55.0%
ATGCAGCGATACCTCAGGCT+CGG + chr2.1:61993957-61993976 MS.gene03170:intron 55.0%
CAAAGGGTTCGGGTGCACAA+TGG + chr2.1:61992085-61992104 MS.gene03170:CDS 55.0%
CAATGACATCCCTGCCGACA+AGG + chr2.1:61993173-61993192 MS.gene03170:CDS 55.0%
CAGACAGAACTTCAGGCACC+TGG + chr2.1:61993590-61993609 MS.gene03170:CDS 55.0%
CATTCCAACGACGGCACCAA+TGG - chr2.1:61992975-61992994 None:intergenic 55.0%
CTAGTCGTCAGCAAAGTCGG+TGG + chr2.1:61993433-61993452 MS.gene03170:intron 55.0%
GAACTTCAGGCACCTGGTGA+CGG + chr2.1:61993596-61993615 MS.gene03170:CDS 55.0%
GACGGTACCCGCATAGAAGA+TGG - chr2.1:61993145-61993164 None:intergenic 55.0%
GAGAGGATAGATCCCGCTGA+AGG + chr2.1:61993384-61993403 MS.gene03170:intron 55.0%
GGACTCGGATCCCTTAAGCT+AGG + chr2.1:61993323-61993342 MS.gene03170:intron 55.0%
TCGCATACTGGTGCACAGTC+AGG + chr2.1:61993686-61993705 MS.gene03170:CDS 55.0%
! CTACCCTTTCCGTGCTGTTC+AGG + chr2.1:61992272-61992291 MS.gene03170:intron 55.0%
! GCACCAATGGTGGGAAGAGT+TGG - chr2.1:61992962-61992981 None:intergenic 55.0%
! GGTCTCTGATTCGAGCCTTG+TGG + chr2.1:61993344-61993363 MS.gene03170:intron 55.0%
!! TCAGGCTCGGAAAGCATCCT+TGG + chr2.1:61993970-61993989 MS.gene03170:CDS 55.0%
ACTGGTGCACAGTCAGGCAG+TGG + chr2.1:61993692-61993711 MS.gene03170:CDS 60.0%
CAGCATACCTGACGCCAGCA+TGG - chr2.1:61993816-61993835 None:intergenic 60.0%
CATGCTGGCGTCAGGTATGC+TGG + chr2.1:61993814-61993833 MS.gene03170:intron 60.0%
CATGGCTGACCACCTTCAGC+GGG - chr2.1:61993399-61993418 None:intergenic 60.0%
CCAACGACGGCACCAATGGT+GGG - chr2.1:61992971-61992990 None:intergenic 60.0%
CTTGGATGACCAGAGGAGGC+TGG - chr2.1:61993650-61993669 None:intergenic 60.0%
GAGGAGGCTGGTGCATTTGC+AGG - chr2.1:61993638-61993657 None:intergenic 60.0%
GCAAATGCACCAGCCTCCTC+TGG + chr2.1:61993638-61993657 MS.gene03170:CDS 60.0%
GCATGGCTGACCACCTTCAG+CGG - chr2.1:61993400-61993419 None:intergenic 60.0%
GCCATTACCATGCTGGCGTC+AGG + chr2.1:61993806-61993825 MS.gene03170:CDS 60.0%
GGAGGCTCGGCATTGCTAAC+AGG - chr2.1:61993773-61993792 None:intergenic 60.0%
GGGACTTGGATGACCAGAGG+AGG - chr2.1:61993654-61993673 None:intergenic 60.0%
TCCAACGACGGCACCAATGG+TGG - chr2.1:61992972-61992991 None:intergenic 60.0%
!! CCCACCATTGGTGCCGTCGT+TGG + chr2.1:61992968-61992987 MS.gene03170:CDS 65.0%
CTCACGGGCACACCGTCACC+AGG - chr2.1:61993611-61993630 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 61991446 61994279 61991446 ID=MS.gene03170
chr2.1 mRNA 61991446 61994279 61991446 ID=MS.gene03170.t1;Parent=MS.gene03170
chr2.1 exon 61991446 61991491 61991446 ID=MS.gene03170.t1.exon1;Parent=MS.gene03170.t1
chr2.1 CDS 61991446 61991491 61991446 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
chr2.1 exon 61992079 61992263 61992079 ID=MS.gene03170.t1.exon2;Parent=MS.gene03170.t1
chr2.1 CDS 61992079 61992263 61992079 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
chr2.1 exon 61992740 61993005 61992740 ID=MS.gene03170.t1.exon3;Parent=MS.gene03170.t1
chr2.1 CDS 61992740 61993005 61992740 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
chr2.1 exon 61993107 61993194 61993107 ID=MS.gene03170.t1.exon4;Parent=MS.gene03170.t1
chr2.1 CDS 61993107 61993194 61993107 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
chr2.1 exon 61993533 61993827 61993533 ID=MS.gene03170.t1.exon5;Parent=MS.gene03170.t1
chr2.1 CDS 61993533 61993827 61993533 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
chr2.1 exon 61993963 61994020 61993963 ID=MS.gene03170.t1.exon6;Parent=MS.gene03170.t1
chr2.1 CDS 61993963 61994020 61993963 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
chr2.1 exon 61994219 61994279 61994219 ID=MS.gene03170.t1.exon7;Parent=MS.gene03170.t1
chr2.1 CDS 61994219 61994279 61994219 ID=cds.MS.gene03170.t1;Parent=MS.gene03170.t1
Gene Sequence

>MS.gene03170

ATGCATGCAAACATTCCTGAGTGTTTAATTTCATTGGTGGAACTAAGTAAGTTTTTGTGTCTTGTACTATAGATATTTAAAGTAGCATATGTATGTGTGCTAAATTTGTTATCAACTTCTTATCAATATTGTTTATTTTTTAAGAGATTCTTGTATAAGATATTCCTTAAGGTCAGTGCATGTTTAGATGGATGGTGAATTTGATGGTGAGTTTAATAACGTGCCACCAAATTTTGTCAAACTGATCGGTGATTCCAAACATGCGCTTAGCGCGTGTTTGGTTGTAACGTTACAAAAGTTGAATTTGAATGAATTGACTTTGTAAAATTGATTTTGACTGGAACTGACTTGAATTGACATGTTTCTCATATAAAAATGGATTGAATGATAAATTTAATGCTAAGATCAATTGTAGGAGTCAAAGGTTACTAATTCCAACTTGAAGCTGAATCAATTCTAGAAACAAAATCAATCATATCCGAAAAGATCCAAACATTTCAAAATCAATTCTATACATCTAGAATCAAATTTGACTTCTCCAAAAGTGAAACCAAACATCTACACTTAGTGGATGCCATATTGTGAATTTTTCAATCTATTTTTTATCCCTTAAGGTTTAGTGGGTATGTGTAGGCTTCACAAAGGGTTCGGGTGCACAATGGCCCTTTTCCAACAAAGTATCTGCTCAACCACATTTGATGTCTTTTGAGGTTTCTCAAGATGATAATACTAAGATCTTATCTGATCCCATAACATCTGCTGGTTTTATGACTCCAGATGCATTTGACTGTAGTAAAAAACTCTCTGCTGAACCTCAGGTTTGATGCTACCCTTTCCGTGCTGTTCAGGCTTTAAACTTTGATACAAGATTAGTGTATTTTTTTTACATAGTTACACTGACAATAAATCACAATCAATCATATGTAATATTTGAAGAAATTATGATTAAAGTTAAACGTTTGTAATGATCGACGATTAAGCTGGATTGATTGTGTAACATTTTTTACATTGACGGTGTATATGGATTAAGTCGTTGACTTAAAAGTAAAATAAGTAATATTAGTTTATGAACATTTAACATTTGGATGATCCAGTGTATTCTAGTCTGATTGGTATTCTAATTGTAAGTCAACTTAGTAGTATATTAATTAAGGGAATCCTCAAATTTAAACAAGTACAAGTTGTTTTGCAATATTTCAAATCTTAATATACAAGATCTTACATTCAACACTGATCAGCTGATGATTTTTTGCCCTTCACTTCCTTCTATTGTTTGTTTGCAATTAATATTTAGAAATCTTTCAATCATGATGGGCAAGGTGGCTTTCACTTTTCACTTATTCCATATCCTGTACAACATGATGTGAAGATGTTTTCACTTTCCAATCAAGCTAATACAGTTTCATTGACGAACTCATTCCCGAGGAATCATTTTGTAACTGCTGGTCAGAATATGAATGGTTATCATATGAAGCTGCCACTACTTGGGGGAATACCTGTTACATCGCCTCAACCAACTCTTCCCACCATTGGTGCCGTCGTTGGAATGCCTGAATCGTAGTAATTTTACTAATTCAAATTTTATGATTAACTTTTATGTGTACAGTGCACAAATTTGTTTGTATTTCATTTCTATAATGATTGATTTTATTTTGAAACAGCAATGTGAAACCATCTCTGCCTTCTTCCCAACTTACCATCTTCTATGCGGGTACCGTCAATGTTTTCAATGACATCCCTGCCGACAAGGTATCTCTCTTTGTTTATATTCCTTCTGCCTATAAATAAATACAAGGTAAAAAGGCCACAATTCATTATTTTTTTCCTTGCCAACTTGACCTTGATCACCAACATTACATTGGTCCGAGTGAAAAACTGGACTCGGATCCCTTAAGCTAGGTCTCTGATTCGAGCCTTGTGGATGGGGAAAAAATGGTTGAGAGGATAGATCCCGCTGAAGGTGGTCAGCCATGCTCCCAAACAGAGACTAGTCGTCAGCAAAGTCGGTGGATCACACCAATAACTTGGTTAACGAAAAAACTTGGCCTTGACCATAGTCAAGCTTAATTGTGGCACTATTTCTTCAGGCACAAGCTATCCTGTTGTTGGCTAGGAATGGTGTATCAGTGGCTTCTAACATAGCACAGACAGAACTTCAGGCACCTGGTGACGGTGTGCCCGTGAGTCAACCTGCAAATGCACCAGCCTCCTCTGGTCATCCAAGTCCCATATCTATTTCATCGCATACTGGTGCACAGTCAGGCAGTGGCTCAACTAGCACCAATGAATTTCTCGCAGTTAAAACAACTGGTGTTCCCATCACTCCTGTTAGCAATGCCGAGCCTCCAAGAGTAATCGATGCCATTACCATGCTGGCGTCAGGTATGCTGGAAGTACCATTTCTCATTATTGCAGTTAGATTATTTTGTTTAGGGATATTTGTCTACATTTTACACATTGAAGAGAAACAAATCCATTCTACACATTTAATAATTTCACTACCAATCTTTTATGCAGCGATACCTCAGGCTCGGAAAGCATCCTTGGCTCGTTTTCTAGAAAAGCGCAAGGAGAGGTTAGTATTGATGCCTTTTCTTTATAAAAGTAAAATACCATCCTAGATTAGATTTAAGGGCAACCATTTCTACACACATTACTTTTTTTGCGCCCCTTCAAATTGAAGGGTAATGAGGATAATAACTTTGCTAATTTTACTAAAACTTAGCATTTGTAGTACTTTACATTACTTAAGCATTTAGTATTGTGTTTGCAGGGTGATGAATGCAGCACCATATAACATTAACAAGAAATCTGAAGAGTGTACTTCATCATAA
Protein sequence

>MS.gene03170.t1

MHANIPECLISLVELSFTKGSGAQWPFSNKVSAQPHLMSFEVSQDDNTKILSDPITSAGFMTPDAFDCSKKLSAEPQKSFNHDGQGGFHFSLIPYPVQHDVKMFSLSNQANTVSLTNSFPRNHFVTAGQNMNGYHMKLPLLGGIPVTSPQPTLPTIGAVVGMPESYNVKPSLPSSQLTIFYAGTVNVFNDIPADKAQAILLLARNGVSVASNIAQTELQAPGDGVPVSQPANAPASSGHPSPISISSHTGAQSGSGSTSTNEFLAVKTTGVPITPVSNAEPPRVIDAITMLASAIPQARKASLARFLEKRKERVMNAAPYNINKKSEECTSS