Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031722.t1 | XP_003607453.1 | 100 | 203 | 0 | 0 | 14 | 216 | 14 | 216 | 7.40E-114 | 419.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031722.t1 | G7JSU3 | 100.0 | 203 | 0 | 0 | 14 | 216 | 14 | 216 | 5.3e-114 | 419.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031722.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031722.t1 | MTR_4g078170 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 6.72e-164 | 451 |
| MS.gene031722.t1 | MTR_5g030130 | 72.381 | 210 | 56 | 1 | 3 | 210 | 23 | 232 | 7.94e-115 | 327 |
| MS.gene031722.t1 | MTR_5g007230 | 73.516 | 219 | 45 | 4 | 1 | 213 | 1 | 212 | 2.35e-113 | 323 |
| MS.gene031722.t1 | MTR_8g066820 | 69.159 | 214 | 62 | 2 | 3 | 213 | 21 | 233 | 3.82e-107 | 308 |
| MS.gene031722.t1 | MTR_5g030130 | 77.465 | 142 | 32 | 0 | 1 | 142 | 21 | 162 | 1.97e-85 | 251 |
| MS.gene031722.t1 | MTR_7g102790 | 54.726 | 201 | 81 | 5 | 15 | 209 | 7 | 203 | 1.66e-70 | 214 |
| MS.gene031722.t1 | MTR_1g062160 | 53.465 | 202 | 81 | 4 | 15 | 209 | 7 | 202 | 4.01e-70 | 213 |
| MS.gene031722.t1 | MTR_2g060540 | 50.370 | 135 | 57 | 4 | 16 | 140 | 11 | 145 | 4.16e-40 | 134 |
| MS.gene031722.t1 | MTR_2g060500 | 48.889 | 135 | 59 | 3 | 16 | 140 | 11 | 145 | 1.17e-39 | 133 |
| MS.gene031722.t1 | MTR_4g116300 | 31.837 | 245 | 115 | 4 | 15 | 208 | 6 | 249 | 6.97e-38 | 132 |
| MS.gene031722.t1 | MTR_2g055210 | 32.922 | 243 | 115 | 5 | 12 | 208 | 99 | 339 | 8.85e-38 | 134 |
| MS.gene031722.t1 | MTR_2g084495 | 35.683 | 227 | 110 | 6 | 16 | 208 | 5 | 229 | 9.12e-38 | 131 |
| MS.gene031722.t1 | MTR_2g084525 | 48.936 | 141 | 62 | 4 | 16 | 146 | 5 | 145 | 4.49e-36 | 127 |
| MS.gene031722.t1 | MTR_2g084510 | 34.167 | 240 | 109 | 7 | 16 | 208 | 4 | 241 | 2.91e-35 | 125 |
| MS.gene031722.t1 | MTR_4g094680 | 36.486 | 222 | 112 | 6 | 12 | 208 | 19 | 236 | 5.21e-35 | 124 |
| MS.gene031722.t1 | MTR_2g036170 | 32.751 | 229 | 107 | 7 | 15 | 209 | 37 | 252 | 1.38e-30 | 113 |
| MS.gene031722.t1 | MTR_8g105930 | 33.951 | 162 | 82 | 6 | 1 | 141 | 1 | 158 | 1.89e-17 | 78.6 |
| MS.gene031722.t1 | MTR_8g097310 | 29.560 | 159 | 99 | 4 | 54 | 208 | 4 | 153 | 8.28e-17 | 74.7 |
| MS.gene031722.t1 | MTR_5g077740 | 27.000 | 200 | 104 | 8 | 15 | 208 | 23 | 186 | 3.83e-16 | 73.9 |
| MS.gene031722.t1 | MTR_1g032880 | 37.778 | 90 | 45 | 3 | 60 | 142 | 26 | 111 | 1.87e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031722.t1 | AT4G17900 | 68.868 | 212 | 55 | 4 | 3 | 209 | 22 | 227 | 3.25e-101 | 292 |
| MS.gene031722.t1 | AT1G32700 | 67.907 | 215 | 62 | 4 | 6 | 216 | 2 | 213 | 9.27e-97 | 281 |
| MS.gene031722.t1 | AT4G17900 | 69.000 | 200 | 57 | 3 | 12 | 209 | 17 | 213 | 1.93e-96 | 280 |
| MS.gene031722.t1 | AT1G21000 | 51.046 | 239 | 76 | 5 | 9 | 208 | 7 | 243 | 1.68e-76 | 230 |
| MS.gene031722.t1 | AT1G21000 | 51.046 | 239 | 76 | 5 | 9 | 208 | 10 | 246 | 2.09e-76 | 230 |
| MS.gene031722.t1 | AT1G32700 | 67.797 | 177 | 51 | 3 | 43 | 216 | 1 | 174 | 1.32e-75 | 226 |
| MS.gene031722.t1 | AT1G76590 | 46.964 | 247 | 90 | 4 | 1 | 208 | 1 | 245 | 7.77e-72 | 219 |
| MS.gene031722.t1 | AT5G46710 | 52.404 | 208 | 87 | 5 | 9 | 208 | 22 | 225 | 7.88e-70 | 213 |
| MS.gene031722.t1 | AT5G46710 | 52.404 | 208 | 87 | 5 | 9 | 208 | 6 | 209 | 7.97e-70 | 212 |
| MS.gene031722.t1 | AT1G43000 | 51.442 | 208 | 87 | 3 | 15 | 208 | 16 | 223 | 4.56e-68 | 208 |
| MS.gene031722.t1 | AT1G43000 | 51.442 | 208 | 87 | 3 | 15 | 208 | 9 | 216 | 6.10e-68 | 207 |
| MS.gene031722.t1 | AT5G46710 | 61.940 | 134 | 50 | 1 | 9 | 141 | 22 | 155 | 1.73e-60 | 187 |
| MS.gene031722.t1 | AT2G27930 | 45.631 | 206 | 82 | 5 | 15 | 210 | 4 | 189 | 2.23e-51 | 164 |
| MS.gene031722.t1 | AT2G27930 | 45.631 | 206 | 82 | 5 | 15 | 210 | 4 | 189 | 2.23e-51 | 164 |
| MS.gene031722.t1 | AT2G27930 | 46.988 | 166 | 78 | 2 | 15 | 170 | 4 | 169 | 9.30e-47 | 152 |
| MS.gene031722.t1 | AT2G27930 | 46.988 | 166 | 78 | 2 | 15 | 170 | 4 | 169 | 9.30e-47 | 152 |
| MS.gene031722.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 6 | 139 | 2.63e-39 | 136 |
| MS.gene031722.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 6 | 139 | 2.63e-39 | 136 |
| MS.gene031722.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 3 | 136 | 2.77e-39 | 135 |
| MS.gene031722.t1 | AT3G60670 | 46.970 | 132 | 69 | 1 | 10 | 141 | 2 | 132 | 4.83e-37 | 130 |
| MS.gene031722.t1 | AT1G31040 | 37.611 | 226 | 107 | 7 | 15 | 208 | 19 | 242 | 1.05e-36 | 129 |
| MS.gene031722.t1 | AT2G27930 | 46.053 | 152 | 53 | 4 | 68 | 210 | 61 | 192 | 4.88e-32 | 115 |
| MS.gene031722.t1 | AT2G27930 | 46.053 | 152 | 53 | 4 | 68 | 210 | 61 | 192 | 4.88e-32 | 115 |
| MS.gene031722.t1 | AT2G01818 | 35.071 | 211 | 116 | 8 | 17 | 208 | 13 | 221 | 2.04e-25 | 99.4 |
| MS.gene031722.t1 | AT2G01818 | 46.250 | 80 | 37 | 3 | 74 | 147 | 9 | 88 | 4.60e-13 | 65.1 |
Find 53 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAGATACAGAAATTTC+TGG | 0.238023 | 4.3:+30836276 | MS.gene031722:CDS |
| TTTATTCTTCCTCAACTTCT+TGG | 0.252653 | 4.3:-30836954 | None:intergenic |
| TCCTTCAGCTTCTGCTCTCT+TGG | 0.285072 | 4.3:+30836427 | MS.gene031722:CDS |
| CTTCTGCTCTCTTGGTTGTA+AGG | 0.335637 | 4.3:+30836435 | MS.gene031722:CDS |
| CAAACAACATAGAACAATTC+AGG | 0.377021 | 4.3:+30835857 | MS.gene031722:CDS |
| TGGAATTAGGGAGGTGGAGG+AGG | 0.387306 | 4.3:+30835669 | MS.gene031722:intron |
| CTCAACCTAGGCCTGGAAAA+GGG | 0.405265 | 4.3:+30836362 | MS.gene031722:CDS |
| AAGAAACTTGTTTGAAGAAG+TGG | 0.413060 | 4.3:-30835732 | None:intergenic |
| CTTTGCACTGTTTATAACAT+AGG | 0.413289 | 4.3:-30836317 | None:intergenic |
| TTCATACCATGATGTGATAA+GGG | 0.415618 | 4.3:+30836252 | MS.gene031722:CDS |
| CTTCATACCATGATGTGATA+AGG | 0.416229 | 4.3:+30836251 | MS.gene031722:CDS |
| AGCAAGACAAACAGAACAAA+GGG | 0.420807 | 4.3:-30835829 | None:intergenic |
| CCTCAACCTAGGCCTGGAAA+AGG | 0.425716 | 4.3:+30836361 | MS.gene031722:CDS |
| GCTGTTGGAGGTGGTGTTGA+AGG | 0.439304 | 4.3:-30837067 | None:intergenic |
| ATTCTTCCTCAACTTCTTGG+AGG | 0.449130 | 4.3:-30836951 | None:intergenic |
| GAAAGGCCTCAACCTAGGCC+TGG | 0.497293 | 4.3:+30836355 | MS.gene031722:CDS |
| TAACTCACTGCTGTTGGAGG+TGG | 0.507231 | 4.3:-30837076 | None:intergenic |
| CTGTAACTCACTGCTGTTGG+AGG | 0.521807 | 4.3:-30837079 | None:intergenic |
| AAATGTTGAGTCAGAAAGAC+GGG | 0.526940 | 4.3:+30836975 | MS.gene031722:CDS |
| TCAATGAATGGCATTAGTAA+TGG | 0.528017 | 4.3:+30837013 | MS.gene031722:CDS |
| GAAGGCTACGGTCACAGACT+TGG | 0.533320 | 4.3:-30836399 | None:intergenic |
| AGAACAGTTAAGAGGAGGAA+AGG | 0.533678 | 4.3:+30837100 | MS.gene031722:CDS |
| ATCAATGTTGATAGATAAGG+AGG | 0.535527 | 4.3:+30836227 | MS.gene031722:intron |
| ATTCCACATAGAGCTCCAAT+GGG | 0.539365 | 4.3:+30837124 | MS.gene031722:CDS |
| TGAATGCAATATGTATTGCT+TGG | 0.542264 | 4.3:+30835791 | MS.gene031722:CDS |
| AATTCCACATAGAGCTCCAA+TGG | 0.542578 | 4.3:+30837123 | MS.gene031722:CDS |
| CAGAAACCCTTATCACATCA+TGG | 0.550564 | 4.3:-30836258 | None:intergenic |
| GCTACGGTCACAGACTTGGC+AGG | 0.558501 | 4.3:-30836395 | None:intergenic |
| AATGGCATTAGTAATGGAAG+TGG | 0.564357 | 4.3:+30837019 | MS.gene031722:CDS |
| TCAACCTAGGCCTGGAAAAG+GGG | 0.568882 | 4.3:+30836363 | MS.gene031722:CDS |
| TGAGTTACAGAACAGTTAAG+AGG | 0.568904 | 4.3:+30837092 | MS.gene031722:CDS |
| TGAATGAAAGGCCTCAACCT+AGG | 0.570401 | 4.3:+30836350 | MS.gene031722:CDS |
| TTGGAACCTCCAAGAAGTTG+AGG | 0.571156 | 4.3:+30836945 | MS.gene031722:CDS |
| AGTCAGAAAGACGGGTCTGA+TGG | 0.574132 | 4.3:+30836983 | MS.gene031722:CDS |
| GTCACAGACTTGGCAGGTGT+TGG | 0.575139 | 4.3:-30836389 | None:intergenic |
| TGAAGAAGTGGTTGCAACCA+TGG | 0.585315 | 4.3:-30835720 | None:intergenic |
| AGAAGCTGAAGGAATCAAGA+AGG | 0.586801 | 4.3:-30836417 | None:intergenic |
| GTTCTGTAACTCACTGCTGT+TGG | 0.597323 | 4.3:-30837082 | None:intergenic |
| AAGAAAACAAGTGGCCACCA+TGG | 0.602626 | 4.3:+30835703 | MS.gene031722:CDS |
| TGAAGGAATCAAGAAGGCTA+CGG | 0.603890 | 4.3:-30836411 | None:intergenic |
| AAGCAAGACAAACAGAACAA+AGG | 0.605554 | 4.3:-30835830 | None:intergenic |
| TATTGCTTGGATTGTAACAA+TGG | 0.606739 | 4.3:+30835804 | MS.gene031722:CDS |
| AAAATGTTGAGTCAGAAAGA+CGG | 0.611575 | 4.3:+30836974 | MS.gene031722:CDS |
| GATGGTGAAGAGTCAATGAA+TGG | 0.621483 | 4.3:+30837001 | MS.gene031722:CDS |
| GAAATTTCTGGACATAGCAG+AGG | 0.630359 | 4.3:+30836288 | MS.gene031722:CDS |
| ACCAAGAGAGCAGAAGCTGA+AGG | 0.631097 | 4.3:-30836428 | None:intergenic |
| CACTCTTGTGTGAATCTGAG+TGG | 0.634730 | 4.3:-30835770 | None:intergenic |
| ACAATGAAGAAGAAAACAAG+TGG | 0.648499 | 4.3:+30835694 | MS.gene031722:CDS |
| TCCACATAGAGCTCCAATGG+GGG | 0.650434 | 4.3:+30837126 | MS.gene031722:CDS |
| GTTACAGAACAGTTAAGAGG+AGG | 0.658849 | 4.3:+30837095 | MS.gene031722:CDS |
| CCACATAGAGCTCCAATGGG+GGG | 0.658994 | 4.3:+30837127 | MS.gene031722:CDS |
| TTCCACATAGAGCTCCAATG+GGG | 0.732872 | 4.3:+30837125 | MS.gene031722:CDS |
| AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | 4.3:-30835717 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAATAATCAAATTT+AGG | - | chr4.3:30836726-30836745 | None:intergenic | 10.0% |
| !!! | AAAAATCAAATTTTTTCAAT+TGG | - | chr4.3:30835641-30835660 | None:intergenic | 10.0% |
| !!! | AAAATCAAATTTTTTCAATT+GGG | - | chr4.3:30835640-30835659 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGGAATTA+GGG | + | chr4.3:30835657-30835676 | MS.gene031722:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGAATT+AGG | + | chr4.3:30835656-30835675 | MS.gene031722:intron | 10.0% |
| !! | AATTACAAAAAAACATCAAA+AGG | - | chr4.3:30835599-30835618 | None:intergenic | 15.0% |
| !! | ATTACAAAAAAACATCAAAA+GGG | - | chr4.3:30835598-30835617 | None:intergenic | 15.0% |
| !!! | TTTTGCTAAAATAAATAATG+TGG | + | chr4.3:30836168-30836187 | MS.gene031722:intron | 15.0% |
| !! | ATAACAAGCAATTATTCAAA+TGG | - | chr4.3:30836063-30836082 | None:intergenic | 20.0% |
| !! | TAATTATTGAATTGGTCAAA+GGG | - | chr4.3:30836029-30836048 | None:intergenic | 20.0% |
| !! | TATAAAGTATGCAAACATTA+AGG | + | chr4.3:30836819-30836838 | MS.gene031722:intron | 20.0% |
| !! | TTAATTATTGAATTGGTCAA+AGG | - | chr4.3:30836030-30836049 | None:intergenic | 20.0% |
| !!! | AAAGTGTTAAAATGGTTAAA+TGG | + | chr4.3:30836641-30836660 | MS.gene031722:intron | 20.0% |
| !!! | ACTGATTTGAAACAAAAAAT+TGG | - | chr4.3:30835885-30835904 | None:intergenic | 20.0% |
| !!! | ATTTTTTCTTGTTAGATTGT+TGG | + | chr4.3:30836926-30836945 | MS.gene031722:intron | 20.0% |
| !!! | CATTTTTCTTACTTTTTCAA+AGG | - | chr4.3:30836861-30836880 | None:intergenic | 20.0% |
| !!! | TATCAAATTTTCACAGAATT+GGG | - | chr4.3:30835945-30835964 | None:intergenic | 20.0% |
| !!! | TCTATTGTAAAGTGTTAAAA+TGG | + | chr4.3:30836633-30836652 | MS.gene031722:intron | 20.0% |
| !!! | TTATCAAATTTTCACAGAAT+TGG | - | chr4.3:30835946-30835965 | None:intergenic | 20.0% |
| !!! | TTTATCAATGTTGATAGATA+AGG | + | chr4.3:30836224-30836243 | MS.gene031722:intron | 20.0% |
| ! | ACTTTATACAGAAAAGAAGT+AGG | - | chr4.3:30836807-30836826 | None:intergenic | 25.0% |
| ! | CAGTTAGATGTATATGAAAT+TGG | - | chr4.3:30836488-30836507 | None:intergenic | 25.0% |
| ! | CGTTAAGTCAAAATAATCAA+GGG | - | chr4.3:30836519-30836538 | None:intergenic | 25.0% |
| ! | TCAAATCAGTTAATTGTGTT+TGG | + | chr4.3:30835895-30835914 | MS.gene031722:intron | 25.0% |
| !!! | AGATTGTGTTTTTGAATGAA+AGG | + | chr4.3:30836338-30836357 | MS.gene031722:CDS | 25.0% |
| !!! | ATTATTTTGACTTAACGCTA+TGG | + | chr4.3:30836522-30836541 | MS.gene031722:intron | 25.0% |
| !!! | TTTTTTTTTTGGAATTAGGG+AGG | + | chr4.3:30835660-30835679 | MS.gene031722:intron | 25.0% |
| AAAATGTTGAGTCAGAAAGA+CGG | + | chr4.3:30836974-30836993 | MS.gene031722:CDS | 30.0% | |
| ACAATGAAGAAGAAAACAAG+TGG | + | chr4.3:30835694-30835713 | MS.gene031722:CDS | 30.0% | |
| CAAACAACATAGAACAATTC+AGG | + | chr4.3:30835857-30835876 | MS.gene031722:CDS | 30.0% | |
| CTTTGCACTGTTTATAACAT+AGG | - | chr4.3:30836320-30836339 | None:intergenic | 30.0% | |
| GCGTTAAGTCAAAATAATCA+AGG | - | chr4.3:30836520-30836539 | None:intergenic | 30.0% | |
| TATTGCTTGGATTGTAACAA+TGG | + | chr4.3:30835804-30835823 | MS.gene031722:CDS | 30.0% | |
| TCAATGAATGGCATTAGTAA+TGG | + | chr4.3:30837013-30837032 | MS.gene031722:CDS | 30.0% | |
| TCAGTTAATTGTGTTTGGTT+TGG | + | chr4.3:30835900-30835919 | MS.gene031722:intron | 30.0% | |
| TGAATGCAATATGTATTGCT+TGG | + | chr4.3:30835791-30835810 | MS.gene031722:CDS | 30.0% | |
| TTATACAGAAAAGAAGTAGG+AGG | - | chr4.3:30836804-30836823 | None:intergenic | 30.0% | |
| TTCATACCATGATGTGATAA+GGG | + | chr4.3:30836252-30836271 | MS.gene031722:CDS | 30.0% | |
| TTTATTCTTCCTCAACTTCT+TGG | - | chr4.3:30836957-30836976 | None:intergenic | 30.0% | |
| ! | AAGAAACTTGTTTGAAGAAG+TGG | - | chr4.3:30835735-30835754 | None:intergenic | 30.0% |
| ! | AGAAAAATGATGATGAGAGT+AGG | + | chr4.3:30836872-30836891 | MS.gene031722:intron | 30.0% |
| ! | ATCAATGTTGATAGATAAGG+AGG | + | chr4.3:30836227-30836246 | MS.gene031722:intron | 30.0% |
| !! | TTCTGAGATACAGAAATTTC+TGG | + | chr4.3:30836276-30836295 | MS.gene031722:CDS | 30.0% |
| AAATGTTGAGTCAGAAAGAC+GGG | + | chr4.3:30836975-30836994 | MS.gene031722:CDS | 35.0% | |
| AAGCAAGACAAACAGAACAA+AGG | - | chr4.3:30835833-30835852 | None:intergenic | 35.0% | |
| AGCAAGACAAACAGAACAAA+GGG | - | chr4.3:30835832-30835851 | None:intergenic | 35.0% | |
| CAATAGAAAACTTTCCACAC+AGG | - | chr4.3:30836620-30836639 | None:intergenic | 35.0% | |
| CTTCATACCATGATGTGATA+AGG | + | chr4.3:30836251-30836270 | MS.gene031722:CDS | 35.0% | |
| GTGATCCAAAAATGCAGTTT+GGG | - | chr4.3:30836671-30836690 | None:intergenic | 35.0% | |
| TGAGTTACAGAACAGTTAAG+AGG | + | chr4.3:30837092-30837111 | MS.gene031722:CDS | 35.0% | |
| TGATCCAAAAATGCAGTTTG+GGG | - | chr4.3:30836670-30836689 | None:intergenic | 35.0% | |
| TGTGATCCAAAAATGCAGTT+TGG | - | chr4.3:30836672-30836691 | None:intergenic | 35.0% | |
| ! | AAAATGATGATGAGAGTAGG+TGG | + | chr4.3:30836875-30836894 | MS.gene031722:intron | 35.0% |
| ! | AATGGCATTAGTAATGGAAG+TGG | + | chr4.3:30837019-30837038 | MS.gene031722:CDS | 35.0% |
| ! | TGTTGATTGTTCTGCTTTGA+TGG | + | chr4.3:30836106-30836125 | MS.gene031722:intron | 35.0% |
| !!! | TTTTGACTTAACGCTATGGT+TGG | + | chr4.3:30836526-30836545 | MS.gene031722:intron | 35.0% |
| !!! | TTTTTTTGGAATTAGGGAGG+TGG | + | chr4.3:30835663-30835682 | MS.gene031722:intron | 35.0% |
| AATTCCACATAGAGCTCCAA+TGG | + | chr4.3:30837123-30837142 | MS.gene031722:CDS | 40.0% | |
| AGAACAGTTAAGAGGAGGAA+AGG | + | chr4.3:30837100-30837119 | MS.gene031722:CDS | 40.0% | |
| AGAAGCTGAAGGAATCAAGA+AGG | - | chr4.3:30836420-30836439 | None:intergenic | 40.0% | |
| ATTCCACATAGAGCTCCAAT+GGG | + | chr4.3:30837124-30837143 | MS.gene031722:CDS | 40.0% | |
| ATTCTTCCTCAACTTCTTGG+AGG | - | chr4.3:30836954-30836973 | None:intergenic | 40.0% | |
| CAGAAACCCTTATCACATCA+TGG | - | chr4.3:30836261-30836280 | None:intergenic | 40.0% | |
| GATCCAAAAATGCAGTTTGG+GGG | - | chr4.3:30836669-30836688 | None:intergenic | 40.0% | |
| GATGGTGAAGAGTCAATGAA+TGG | + | chr4.3:30837001-30837020 | MS.gene031722:CDS | 40.0% | |
| GATTGTTCTGCTTTGATGGA+TGG | + | chr4.3:30836110-30836129 | MS.gene031722:intron | 40.0% | |
| GTTACAGAACAGTTAAGAGG+AGG | + | chr4.3:30837095-30837114 | MS.gene031722:CDS | 40.0% | |
| TCAGTCGGGTAAGTAAAGTT+TGG | + | chr4.3:30836560-30836579 | MS.gene031722:intron | 40.0% | |
| TGAAGGAATCAAGAAGGCTA+CGG | - | chr4.3:30836414-30836433 | None:intergenic | 40.0% | |
| ! | GAAATTTCTGGACATAGCAG+AGG | + | chr4.3:30836288-30836307 | MS.gene031722:CDS | 40.0% |
| ! | TTGGTAATCTGGAGTTCAGT+CGG | + | chr4.3:30836545-30836564 | MS.gene031722:intron | 40.0% |
| !! | TAACGCTATGGTTGGTAATC+TGG | + | chr4.3:30836534-30836553 | MS.gene031722:intron | 40.0% |
| AAGAAAACAAGTGGCCACCA+TGG | + | chr4.3:30835703-30835722 | MS.gene031722:CDS | 45.0% | |
| ATAATGATTCCTCCCCCCAT+TGG | - | chr4.3:30837142-30837161 | None:intergenic | 45.0% | |
| CACTCTTGTGTGAATCTGAG+TGG | - | chr4.3:30835773-30835792 | None:intergenic | 45.0% | |
| CTTCTGCTCTCTTGGTTGTA+AGG | + | chr4.3:30836435-30836454 | MS.gene031722:CDS | 45.0% | |
| GTTCTGTAACTCACTGCTGT+TGG | - | chr4.3:30837085-30837104 | None:intergenic | 45.0% | |
| TAGAAGCTGATTGACCTGTG+TGG | + | chr4.3:30836603-30836622 | MS.gene031722:intron | 45.0% | |
| TGAAGAAGTGGTTGCAACCA+TGG | - | chr4.3:30835723-30835742 | None:intergenic | 45.0% | |
| TGAATGAAAGGCCTCAACCT+AGG | + | chr4.3:30836350-30836369 | MS.gene031722:CDS | 45.0% | |
| TTCCACATAGAGCTCCAATG+GGG | + | chr4.3:30837125-30837144 | MS.gene031722:CDS | 45.0% | |
| TTGGAACCTCCAAGAAGTTG+AGG | + | chr4.3:30836945-30836964 | MS.gene031722:CDS | 45.0% | |
| ! | GATCCCCCAAACTGCATTTT+TGG | + | chr4.3:30836663-30836682 | MS.gene031722:intron | 45.0% |
| ! | GTTCTGCTTTGATGGATGGA+TGG | + | chr4.3:30836114-30836133 | MS.gene031722:intron | 45.0% |
| ! | TGGTAATCTGGAGTTCAGTC+GGG | + | chr4.3:30836546-30836565 | MS.gene031722:intron | 45.0% |
| !!! | TTTTGGAATTAGGGAGGTGG+AGG | + | chr4.3:30835666-30835685 | MS.gene031722:intron | 45.0% |
| !!! | AATTTGATTTTTTTTTTTTT+TGG | + | chr4.3:30835649-30835668 | MS.gene031722:intron | 5.0% |
| !!! | ATTTGATAATAAAATAATTT+TGG | + | chr4.3:30835957-30835976 | MS.gene031722:intron | 5.0% |
| !!! | ATTTTTTTTAATTATTGAAT+TGG | - | chr4.3:30836037-30836056 | None:intergenic | 5.0% |
| !!! | GATAATTTTTATTTAAATTA+TGG | + | chr4.3:30836136-30836155 | MS.gene031722:intron | 5.0% |
| ACCAAGAGAGCAGAAGCTGA+AGG | - | chr4.3:30836431-30836450 | None:intergenic | 50.0% | |
| AGAAGTGGTTGCAACCATGG+TGG | - | chr4.3:30835720-30835739 | None:intergenic | 50.0% | |
| AGTCAGAAAGACGGGTCTGA+TGG | + | chr4.3:30836983-30837002 | MS.gene031722:CDS | 50.0% | |
| CTCAACCTAGGCCTGGAAAA+GGG | + | chr4.3:30836362-30836381 | MS.gene031722:CDS | 50.0% | |
| CTGTAACTCACTGCTGTTGG+AGG | - | chr4.3:30837082-30837101 | None:intergenic | 50.0% | |
| TAACTCACTGCTGTTGGAGG+TGG | - | chr4.3:30837079-30837098 | None:intergenic | 50.0% | |
| TCAACCTAGGCCTGGAAAAG+GGG | + | chr4.3:30836363-30836382 | MS.gene031722:CDS | 50.0% | |
| TCCACATAGAGCTCCAATGG+GGG | + | chr4.3:30837126-30837145 | MS.gene031722:CDS | 50.0% | |
| TCCTTCAGCTTCTGCTCTCT+TGG | + | chr4.3:30836427-30836446 | MS.gene031722:CDS | 50.0% | |
| CCACATAGAGCTCCAATGGG+GGG | + | chr4.3:30837127-30837146 | MS.gene031722:CDS | 55.0% | |
| CCTCAACCTAGGCCTGGAAA+AGG | + | chr4.3:30836361-30836380 | MS.gene031722:CDS | 55.0% | |
| GAAGGCTACGGTCACAGACT+TGG | - | chr4.3:30836402-30836421 | None:intergenic | 55.0% | |
| GTCACAGACTTGGCAGGTGT+TGG | - | chr4.3:30836392-30836411 | None:intergenic | 55.0% | |
| TGGAATTAGGGAGGTGGAGG+AGG | + | chr4.3:30835669-30835688 | MS.gene031722:intron | 55.0% | |
| ! | CCTTTTCCAGGCCTAGGTTG+AGG | - | chr4.3:30836364-30836383 | None:intergenic | 55.0% |
| ! | GCTGTTGGAGGTGGTGTTGA+AGG | - | chr4.3:30837070-30837089 | None:intergenic | 55.0% |
| !!! | GTGTTGGTGACCCCTTTTCC+AGG | - | chr4.3:30836376-30836395 | None:intergenic | 55.0% |
| CATAGAGCTCCAATGGGGGG+AGG | + | chr4.3:30837130-30837149 | MS.gene031722:CDS | 60.0% | |
| CCCCCCATTGGAGCTCTATG+TGG | - | chr4.3:30837130-30837149 | None:intergenic | 60.0% | |
| GAAAGGCCTCAACCTAGGCC+TGG | + | chr4.3:30836355-30836374 | MS.gene031722:CDS | 60.0% | |
| GCTACGGTCACAGACTTGGC+AGG | - | chr4.3:30836398-30836417 | None:intergenic | 60.0% | |
| ! | GTGACCCCTTTTCCAGGCCT+AGG | - | chr4.3:30836370-30836389 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 30835572 | 30837171 | 30835572 | ID=MS.gene031722 |
| chr4.3 | mRNA | 30835572 | 30837171 | 30835572 | ID=MS.gene031722.t1;Parent=MS.gene031722 |
| chr4.3 | exon | 30835572 | 30835574 | 30835572 | ID=MS.gene031722.t1.exon1;Parent=MS.gene031722.t1 |
| chr4.3 | CDS | 30835572 | 30835574 | 30835572 | ID=cds.MS.gene031722.t1;Parent=MS.gene031722.t1 |
| chr4.3 | exon | 30835678 | 30835878 | 30835678 | ID=MS.gene031722.t1.exon2;Parent=MS.gene031722.t1 |
| chr4.3 | CDS | 30835678 | 30835878 | 30835678 | ID=cds.MS.gene031722.t1;Parent=MS.gene031722.t1 |
| chr4.3 | exon | 30836241 | 30836456 | 30836241 | ID=MS.gene031722.t1.exon3;Parent=MS.gene031722.t1 |
| chr4.3 | CDS | 30836241 | 30836456 | 30836241 | ID=cds.MS.gene031722.t1;Parent=MS.gene031722.t1 |
| chr4.3 | exon | 30836941 | 30837171 | 30836941 | ID=MS.gene031722.t1.exon4;Parent=MS.gene031722.t1 |
| chr4.3 | CDS | 30836941 | 30837171 | 30836941 | ID=cds.MS.gene031722.t1;Parent=MS.gene031722.t1 |
| Gene Sequence |
| Protein sequence |
