Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031737.t1 | XP_024638164.1 | 97 | 492 | 12 | 1 | 1 | 489 | 1 | 492 | 6.80E-264 | 919.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031737.t1 | Q84T61 | 50.3 | 493 | 200 | 16 | 14 | 487 | 39 | 505 | 2.1e-104 | 380.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031737.t1 | G7JSS3 | 97.0 | 492 | 12 | 1 | 1 | 489 | 1 | 492 | 4.9e-264 | 919.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene031737.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031737.t1 | MTR_4g077970 | 96.951 | 492 | 12 | 1 | 1 | 489 | 1 | 492 | 0.0 | 983 |
MS.gene031737.t1 | MTR_4g077970 | 96.232 | 345 | 10 | 1 | 148 | 489 | 1 | 345 | 0.0 | 672 |
MS.gene031737.t1 | MTR_5g029680 | 46.680 | 497 | 216 | 16 | 11 | 486 | 31 | 499 | 1.31e-127 | 380 |
MS.gene031737.t1 | MTR_3g104550 | 54.260 | 223 | 90 | 3 | 11 | 233 | 45 | 255 | 5.10e-74 | 238 |
MS.gene031737.t1 | MTR_7g095680 | 56.522 | 207 | 87 | 1 | 11 | 217 | 48 | 251 | 6.25e-74 | 238 |
MS.gene031737.t1 | MTR_1g102860 | 55.714 | 210 | 82 | 4 | 11 | 217 | 39 | 240 | 1.57e-69 | 225 |
MS.gene031737.t1 | MTR_1g061170 | 41.254 | 303 | 151 | 6 | 10 | 309 | 47 | 325 | 6.63e-69 | 228 |
MS.gene031737.t1 | MTR_1g071360 | 51.643 | 213 | 83 | 3 | 12 | 221 | 32 | 227 | 3.50e-63 | 209 |
MS.gene031737.t1 | MTR_1g071360 | 50.685 | 219 | 87 | 4 | 7 | 221 | 23 | 224 | 7.62e-63 | 209 |
MS.gene031737.t1 | MTR_8g105780 | 42.910 | 268 | 145 | 3 | 12 | 278 | 22 | 282 | 2.07e-62 | 208 |
MS.gene031737.t1 | MTR_2g100680 | 43.961 | 207 | 105 | 2 | 12 | 218 | 31 | 226 | 4.86e-54 | 188 |
MS.gene031737.t1 | MTR_6g043060 | 43.318 | 217 | 111 | 3 | 2 | 218 | 12 | 216 | 7.43e-54 | 184 |
MS.gene031737.t1 | MTR_8g083100 | 46.117 | 206 | 99 | 3 | 13 | 218 | 23 | 216 | 9.98e-54 | 188 |
MS.gene031737.t1 | MTR_8g087540 | 44.865 | 185 | 94 | 2 | 10 | 193 | 10 | 187 | 1.08e-51 | 181 |
MS.gene031737.t1 | MTR_2g100670 | 46.486 | 185 | 89 | 1 | 12 | 196 | 33 | 207 | 5.85e-51 | 176 |
MS.gene031737.t1 | MTR_6g086805 | 44.811 | 212 | 105 | 6 | 7 | 218 | 6 | 205 | 1.35e-50 | 176 |
MS.gene031737.t1 | MTR_2g100670 | 46.486 | 185 | 89 | 1 | 12 | 196 | 141 | 315 | 5.11e-50 | 176 |
MS.gene031737.t1 | MTR_2g017890 | 39.683 | 189 | 103 | 2 | 10 | 194 | 13 | 194 | 1.98e-44 | 160 |
MS.gene031737.t1 | MTR_5g010680 | 65.217 | 92 | 32 | 0 | 12 | 103 | 24 | 115 | 1.76e-39 | 147 |
MS.gene031737.t1 | MTR_3g101870 | 42.640 | 197 | 64 | 4 | 9 | 156 | 21 | 217 | 4.38e-39 | 146 |
MS.gene031737.t1 | MTR_0020s0020 | 65.217 | 92 | 32 | 0 | 12 | 103 | 33 | 124 | 1.46e-37 | 141 |
MS.gene031737.t1 | MTR_1g061170 | 35.685 | 241 | 128 | 6 | 72 | 309 | 14 | 230 | 9.81e-37 | 139 |
MS.gene031737.t1 | MTR_5g017470 | 40.704 | 199 | 86 | 4 | 12 | 178 | 9 | 207 | 1.20e-36 | 137 |
MS.gene031737.t1 | MTR_1g100777 | 60.870 | 92 | 36 | 0 | 12 | 103 | 18 | 109 | 9.41e-36 | 135 |
MS.gene031737.t1 | MTR_5g089170 | 61.290 | 93 | 36 | 0 | 12 | 104 | 25 | 117 | 3.62e-34 | 129 |
MS.gene031737.t1 | MTR_7g091370 | 42.484 | 153 | 77 | 2 | 12 | 157 | 22 | 170 | 4.82e-31 | 120 |
MS.gene031737.t1 | MTR_4g088900 | 54.639 | 97 | 40 | 1 | 12 | 104 | 33 | 129 | 2.44e-30 | 117 |
MS.gene031737.t1 | MTR_5g047190 | 48.936 | 94 | 41 | 2 | 20 | 106 | 1 | 94 | 1.85e-21 | 89.4 |
MS.gene031737.t1 | MTR_4g045757 | 58.333 | 60 | 25 | 0 | 10 | 69 | 12 | 71 | 1.20e-17 | 77.8 |
MS.gene031737.t1 | MTR_6g044340 | 28.436 | 211 | 130 | 6 | 58 | 267 | 8 | 198 | 2.34e-17 | 82.4 |
MS.gene031737.t1 | MTR_2g043940 | 32.593 | 135 | 70 | 3 | 69 | 193 | 17 | 140 | 4.89e-14 | 73.9 |
MS.gene031737.t1 | MTR_1g061170 | 30.909 | 165 | 95 | 4 | 148 | 309 | 1 | 149 | 3.33e-13 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031737.t1 | AT5G16820 | 49.194 | 496 | 191 | 13 | 10 | 486 | 25 | 478 | 9.46e-135 | 398 |
MS.gene031737.t1 | AT5G16820 | 49.194 | 496 | 191 | 13 | 10 | 486 | 25 | 478 | 9.46e-135 | 398 |
MS.gene031737.t1 | AT3G02990 | 47.908 | 478 | 215 | 6 | 10 | 486 | 21 | 465 | 5.43e-130 | 385 |
MS.gene031737.t1 | AT1G32330 | 44.467 | 497 | 216 | 13 | 3 | 486 | 28 | 477 | 5.77e-116 | 350 |
MS.gene031737.t1 | AT1G32330 | 44.467 | 497 | 216 | 13 | 3 | 486 | 28 | 477 | 7.12e-116 | 350 |
MS.gene031737.t1 | AT4G17750 | 43.825 | 502 | 207 | 17 | 6 | 486 | 46 | 493 | 2.04e-110 | 336 |
MS.gene031737.t1 | AT2G26150 | 58.095 | 210 | 80 | 2 | 11 | 218 | 43 | 246 | 2.65e-80 | 254 |
MS.gene031737.t1 | AT2G26150 | 58.095 | 210 | 80 | 2 | 11 | 218 | 43 | 246 | 2.65e-80 | 254 |
MS.gene031737.t1 | AT3G22830 | 56.731 | 208 | 89 | 1 | 11 | 217 | 60 | 267 | 5.83e-74 | 239 |
MS.gene031737.t1 | AT1G67970 | 44.366 | 284 | 131 | 8 | 10 | 286 | 17 | 280 | 1.05e-63 | 211 |
MS.gene031737.t1 | AT5G03720 | 43.460 | 237 | 117 | 4 | 10 | 243 | 53 | 275 | 5.37e-61 | 206 |
MS.gene031737.t1 | AT5G03720 | 43.460 | 237 | 117 | 4 | 10 | 243 | 53 | 275 | 5.37e-61 | 206 |
MS.gene031737.t1 | AT3G51910 | 44.700 | 217 | 95 | 3 | 4 | 216 | 21 | 216 | 2.47e-57 | 191 |
MS.gene031737.t1 | AT4G13980 | 42.986 | 221 | 113 | 3 | 13 | 232 | 24 | 232 | 5.40e-56 | 194 |
MS.gene031737.t1 | AT3G24520 | 42.925 | 212 | 90 | 4 | 9 | 218 | 14 | 196 | 5.70e-52 | 179 |
MS.gene031737.t1 | AT5G43840 | 39.834 | 241 | 102 | 6 | 11 | 244 | 16 | 220 | 2.10e-50 | 174 |
MS.gene031737.t1 | AT4G18880 | 37.338 | 308 | 170 | 6 | 4 | 308 | 7 | 294 | 1.94e-48 | 172 |
MS.gene031737.t1 | AT5G54070 | 40.183 | 219 | 111 | 3 | 9 | 222 | 68 | 271 | 6.52e-48 | 169 |
MS.gene031737.t1 | AT3G63350 | 44.103 | 195 | 97 | 2 | 12 | 205 | 28 | 211 | 3.30e-47 | 165 |
MS.gene031737.t1 | AT2G26150 | 56.376 | 149 | 57 | 2 | 72 | 218 | 49 | 191 | 3.47e-47 | 165 |
MS.gene031737.t1 | AT2G26150 | 56.376 | 149 | 57 | 2 | 72 | 218 | 49 | 191 | 3.47e-47 | 165 |
MS.gene031737.t1 | AT5G45710 | 40.889 | 225 | 111 | 5 | 10 | 232 | 11 | 215 | 1.16e-46 | 166 |
MS.gene031737.t1 | AT5G45710 | 40.889 | 225 | 111 | 5 | 10 | 232 | 11 | 215 | 1.16e-46 | 166 |
MS.gene031737.t1 | AT1G46264 | 41.624 | 197 | 74 | 3 | 1 | 156 | 23 | 219 | 1.65e-41 | 152 |
MS.gene031737.t1 | AT5G62020 | 61.702 | 94 | 36 | 0 | 12 | 105 | 23 | 116 | 6.21e-37 | 138 |
MS.gene031737.t1 | AT4G36990 | 52.672 | 131 | 48 | 2 | 1 | 129 | 1 | 119 | 1.57e-36 | 137 |
MS.gene031737.t1 | AT4G11660 | 59.783 | 92 | 37 | 0 | 12 | 103 | 59 | 150 | 1.68e-34 | 133 |
MS.gene031737.t1 | AT2G41690 | 55.000 | 100 | 45 | 0 | 11 | 110 | 39 | 138 | 1.17e-32 | 125 |
MS.gene031737.t1 | AT4G18870 | 39.773 | 88 | 53 | 0 | 12 | 99 | 146 | 233 | 8.28e-19 | 87.4 |
MS.gene031737.t1 | AT4G18870 | 43.820 | 89 | 45 | 2 | 13 | 99 | 14 | 99 | 1.65e-18 | 86.3 |
MS.gene031737.t1 | AT1G77570 | 37.778 | 90 | 53 | 2 | 13 | 99 | 27 | 116 | 2.15e-15 | 73.9 |
Find 114 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGAGGTTCCACCTATTTC+TGG | 0.099338 | 4.3:+30993336 | MS.gene031737:CDS |
AGTTCATCCACCCAAGTTTC+TGG | 0.190167 | 4.3:+30993303 | MS.gene031737:CDS |
AGCACACCAAGACAATATTT+TGG | 0.232538 | 4.3:+30993488 | MS.gene031737:CDS |
CAGGAATCAACGATGAATTC+TGG | 0.282845 | 4.3:+30993691 | MS.gene031737:CDS |
TTTAGGCCAAGCCCACTTAC+TGG | 0.290833 | 4.3:+30993723 | MS.gene031737:CDS |
AAATGTAGTTCTCTAGGATA+TGG | 0.296292 | 4.3:+30993762 | MS.gene031737:CDS |
TGTTGAATCTTCTTTGCTAA+TGG | 0.299601 | 4.3:-30993807 | None:intergenic |
GGATGTGATATCAGCTGTTT+TGG | 0.314761 | 4.3:+30993605 | MS.gene031737:CDS |
TTGTTGTGTTTGAAATATTT+AGG | 0.323777 | 4.3:-30991888 | None:intergenic |
TTTGGATGGGACACAGTCTT+TGG | 0.329794 | 4.3:+30993623 | MS.gene031737:CDS |
AAGAGGATTATGTGGATTCT+TGG | 0.333992 | 4.3:-30993115 | None:intergenic |
CAACCGAATCGATCGTTTCA+TGG | 0.334490 | 4.3:+30991805 | MS.gene031737:CDS |
ATACATGACTGCCCAGAAAT+AGG | 0.338814 | 4.3:-30993348 | None:intergenic |
AACTGTTCATTTGCAACATC+TGG | 0.343307 | 4.3:-30993197 | None:intergenic |
CTTAAGCAAAACCTACGATA+TGG | 0.345914 | 4.3:+30991770 | MS.gene031737:CDS |
CTATTGGTCATACAACTTAC+AGG | 0.350342 | 4.3:-30993390 | None:intergenic |
TGTGTGGAAGTGGGTAAGTT+TGG | 0.353975 | 4.3:+30992805 | MS.gene031737:CDS |
CTGAGGTTCCACCTATTTCT+GGG | 0.367826 | 4.3:+30993337 | MS.gene031737:CDS |
CCGAAGGAACATCATCAATA+AGG | 0.369125 | 4.3:-30993260 | None:intergenic |
TCTTTGCTAATGGCAATTCC+TGG | 0.373655 | 4.3:-30993797 | None:intergenic |
TTTGCAGCCTCATTAATAGA+AGG | 0.376695 | 4.3:-30993162 | None:intergenic |
CATGAATAGTCCGGGCTTCA+TGG | 0.377627 | 4.3:+30992999 | MS.gene031737:CDS |
CAGAATTCATCGTTGATTCC+TGG | 0.379940 | 4.3:-30993690 | None:intergenic |
TTGGTGTGCTGTTGTAAATT+CGG | 0.380502 | 4.3:-30993475 | None:intergenic |
AATCCACATAATCCTCTTGA+TGG | 0.386726 | 4.3:+30993120 | MS.gene031737:CDS |
ATATTTAGGCAAGATGTGTT+TGG | 0.394875 | 4.3:-30991874 | None:intergenic |
GTGTCTCCAGTAAGTGGGCT+TGG | 0.409905 | 4.3:-30993729 | None:intergenic |
CGGTGAGAATGATGATGAAT+TGG | 0.410275 | 4.3:+30993584 | MS.gene031737:CDS |
CATGAAGCCCGGACTATTCA+TGG | 0.411920 | 4.3:-30992998 | None:intergenic |
AACTATCTTCTTCCTGCCCC+TGG | 0.417448 | 4.3:-30993086 | None:intergenic |
GATGAACTACTGCTATCTAA+TGG | 0.419987 | 4.3:-30993288 | None:intergenic |
ATTTGTTAAAGAATATCAAT+AGG | 0.421836 | 4.3:+30992713 | MS.gene031737:CDS |
TGAGCGAATTCCCAGCGGTC+GGG | 0.422148 | 4.3:-30992664 | None:intergenic |
ATCGTTGATTCCTGGAAGCT+TGG | 0.423687 | 4.3:-30993682 | None:intergenic |
AAGAGGTTGAAAGGCTGAAA+AGG | 0.431696 | 4.3:+30992836 | MS.gene031737:CDS |
CCTTATTGATGATGTTCCTT+CGG | 0.432545 | 4.3:+30993260 | MS.gene031737:CDS |
GTGTGGAAGTGGGTAAGTTT+GGG | 0.436120 | 4.3:+30992806 | MS.gene031737:CDS |
AACCGAATCGATCGTTTCAT+GGG | 0.436953 | 4.3:+30991806 | MS.gene031737:CDS |
CAAGATGTGTTTGGAGAAAT+CGG | 0.437903 | 4.3:-30991865 | None:intergenic |
GTTGCCCAACATTTACCAAT+TGG | 0.441846 | 4.3:-30992921 | None:intergenic |
AATGAAAATTCCAAGCTTCC+AGG | 0.444171 | 4.3:+30993672 | MS.gene031737:CDS |
GAATGCATCAAGGTTCTTGA+TGG | 0.448987 | 4.3:-30993238 | None:intergenic |
GATAACCAATTGGTAAATGT+TGG | 0.452224 | 4.3:+30992916 | MS.gene031737:CDS |
GAAGATTCAACAAGAAAAGA+TGG | 0.457111 | 4.3:+30993818 | MS.gene031737:CDS |
CGGAAATCTACTCATGCAAA+TGG | 0.457161 | 4.3:+30992736 | MS.gene031737:CDS |
AGCAAAGGCCATGAATAGTC+CGG | 0.460979 | 4.3:+30992990 | MS.gene031737:CDS |
AAAGAGGCGGCTCCAGGGGC+AGG | 0.463211 | 4.3:+30993074 | MS.gene031737:CDS |
ATAACCAATTGGTAAATGTT+GGG | 0.467159 | 4.3:+30992917 | MS.gene031737:CDS |
TGGTGTGCTGTTGTAAATTC+GGG | 0.470532 | 4.3:-30993474 | None:intergenic |
AAAGTGTTACACCAGAAACT+TGG | 0.470921 | 4.3:-30993314 | None:intergenic |
AGGAATCAACGATGAATTCT+GGG | 0.476706 | 4.3:+30993692 | MS.gene031737:CDS |
TGTTGGGTCATGTGTGGAAG+TGG | 0.480175 | 4.3:+30992795 | MS.gene031737:CDS |
AGCCGCAGAACCCACCTGTT+GGG | 0.484089 | 4.3:+30992779 | MS.gene031737:CDS |
GAAAGGTTGACCCCGACCGC+TGG | 0.485865 | 4.3:+30992653 | MS.gene031737:CDS |
TATTTCTGGGCAGTCATGTA+TGG | 0.490052 | 4.3:+30993350 | MS.gene031737:CDS |
GTTCAATTGTCTGACGAAGC+TGG | 0.491130 | 4.3:-30991916 | None:intergenic |
GACTATTCATGGCCTTTGCT+AGG | 0.492617 | 4.3:-30992987 | None:intergenic |
GAGCGAATTCCCAGCGGTCG+GGG | 0.492924 | 4.3:-30992663 | None:intergenic |
ACAATCGACTGATAACCAAT+TGG | 0.498524 | 4.3:+30992906 | MS.gene031737:CDS |
GAAGTTAAATGTAGTTCTCT+AGG | 0.498658 | 4.3:+30993756 | MS.gene031737:CDS |
ACCCCATGAAACGATCGATT+CGG | 0.504242 | 4.3:-30991808 | None:intergenic |
ACTTCCACACATGACCCAAC+AGG | 0.505692 | 4.3:-30992793 | None:intergenic |
TCGTCTGTGTCTCCAGTAAG+TGG | 0.508093 | 4.3:-30993735 | None:intergenic |
TTCTGGTGTAACACTTTCTG+AGG | 0.510063 | 4.3:+30993320 | MS.gene031737:CDS |
CAAAATCCAAAATATTGTCT+TGG | 0.518046 | 4.3:-30993494 | None:intergenic |
GTACCAGCCTTCTATTAATG+AGG | 0.518867 | 4.3:+30993155 | MS.gene031737:CDS |
TTGTACCTCAGACATGCTAT+TGG | 0.521476 | 4.3:-30993406 | None:intergenic |
GTTCCATCTGTTGAGTAAGA+TGG | 0.529932 | 4.3:-30993851 | None:intergenic |
CGCTGGGAATTCGCTCATGA+AGG | 0.530003 | 4.3:+30992670 | MS.gene031737:CDS |
CAGCCTCATTAATAGAAGGC+TGG | 0.531526 | 4.3:-30993158 | None:intergenic |
AGGATCGAAGATATGACAGC+TGG | 0.535692 | 4.3:+30991720 | None:intergenic |
CGTCCATCAAGAGGATTATG+TGG | 0.541079 | 4.3:-30993123 | None:intergenic |
CATCAATAAGGAATGCATCA+AGG | 0.541216 | 4.3:-30993248 | None:intergenic |
AAAGGTTGACCCCGACCGCT+GGG | 0.545860 | 4.3:+30992654 | MS.gene031737:CDS |
GAAAATTGAGCCATGAAGCC+CGG | 0.546699 | 4.3:-30993009 | None:intergenic |
AAGCCGCAGAACCCACCTGT+TGG | 0.557194 | 4.3:+30992778 | MS.gene031737:CDS |
TAAGTTTGGGCTTGATGAAG+AGG | 0.559114 | 4.3:+30992819 | MS.gene031737:CDS |
GCAAAGGCCATGAATAGTCC+GGG | 0.565582 | 4.3:+30992991 | MS.gene031737:CDS |
AATGAACAGTTCTGCAAGGG+TGG | 0.569475 | 4.3:+30993209 | MS.gene031737:CDS |
AGAGGTTGAAAGGCTGAAAA+GGG | 0.570797 | 4.3:+30992837 | MS.gene031737:CDS |
ATGAGCGAATTCCCAGCGGT+CGG | 0.572798 | 4.3:-30992665 | None:intergenic |
GATGATGTCGTTCCTAGCAA+AGG | 0.573149 | 4.3:+30992975 | MS.gene031737:CDS |
ATATGGTTTGACTAAAGACC+AGG | 0.574236 | 4.3:+30993779 | MS.gene031737:CDS |
GGCTTGATGAAGAGGTTGAA+AGG | 0.575265 | 4.3:+30992827 | MS.gene031737:CDS |
GGACCATCTTACTCAACAGA+TGG | 0.577724 | 4.3:+30993848 | MS.gene031737:CDS |
AAGTGTTACACCAGAAACTT+GGG | 0.578836 | 4.3:-30993313 | None:intergenic |
ACAGATGGAACTTCTTGCAT+CGG | 0.591151 | 4.3:+30993863 | MS.gene031737:CDS |
TCCACACATGACCCAACAGG+TGG | 0.591825 | 4.3:-30992790 | None:intergenic |
AGGATTATGTGGATTCTTGG+TGG | 0.592009 | 4.3:-30993112 | None:intergenic |
GACCCAACAGGTGGGTTCTG+CGG | 0.593008 | 4.3:-30992781 | None:intergenic |
AGTAATAGACATGTTACCGC+TGG | 0.593286 | 4.3:+30993048 | MS.gene031737:CDS |
CGTCTGTGTCTCCAGTAAGT+GGG | 0.594211 | 4.3:-30993734 | None:intergenic |
TGTAAATTCGGGAAATTCAG+CGG | 0.604212 | 4.3:-30993463 | None:intergenic |
ACAGAGTCAGTCAACACAGC+AGG | 0.605291 | 4.3:-30993435 | None:intergenic |
TGCATCAAGGTTCTTGATGG+AGG | 0.607948 | 4.3:-30993235 | None:intergenic |
AGAGTCATCAACCATATCGT+AGG | 0.608336 | 4.3:-30991781 | None:intergenic |
ACAAGAAAAGATGGAGCACA+TGG | 0.615775 | 4.3:+30993827 | MS.gene031737:CDS |
TGGGCAACGTGTGCAAGTGA+TGG | 0.618938 | 4.3:+30992936 | MS.gene031737:CDS |
ACTACTGCTATCTAATGGAA+TGG | 0.622288 | 4.3:-30993283 | None:intergenic |
CTATCTAATGGAATGGCCGA+AGG | 0.622401 | 4.3:-30993276 | None:intergenic |
TTAACAACACGTCCATCAAG+AGG | 0.623081 | 4.3:-30993132 | None:intergenic |
CCCACCTGTTGGGTCATGTG+TGG | 0.640259 | 4.3:+30992789 | MS.gene031737:CDS |
TGTTAAAGAATATCAATAGG+CGG | 0.647648 | 4.3:+30992716 | MS.gene031737:CDS |
TATGACCAATAGCATGTCTG+AGG | 0.654015 | 4.3:+30993401 | MS.gene031737:CDS |
TGCAAATGAACAGTTCTGCA+AGG | 0.655638 | 4.3:+30993205 | MS.gene031737:CDS |
CATGACTGCCCAGAAATAGG+TGG | 0.662832 | 4.3:-30993345 | None:intergenic |
GTTGGGTCATGTGTGGAAGT+GGG | 0.670827 | 4.3:+30992796 | MS.gene031737:CDS |
ACCGAATCGATCGTTTCATG+GGG | 0.677166 | 4.3:+30991807 | MS.gene031737:CDS |
GCAAATGAACAGTTCTGCAA+GGG | 0.681864 | 4.3:+30993206 | MS.gene031737:CDS |
CCACACATGACCCAACAGGT+GGG | 0.694523 | 4.3:-30992789 | None:intergenic |
TGTTACACCAGAAACTTGGG+TGG | 0.706092 | 4.3:-30993310 | None:intergenic |
GGTGGAATTGAAAACGACGA+AGG | 0.715764 | 4.3:-30991844 | None:intergenic |
GATGTGTTTGGAGAAATCGG+TGG | 0.725221 | 4.3:-30991862 | None:intergenic |
CTTCATGAGCGAATTCCCAG+CGG | 0.750748 | 4.3:-30992669 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTGTTAAAGAATATCAAT+AGG | + | chr4.3:30992713-30992732 | MS.gene031737:CDS | 15.0% |
!! | AATTCTTAGAAAACATTCAT+CGG | - | chr4.3:30992265-30992284 | None:intergenic | 20.0% |
!! | ATAGTATTAAAAAAGCAAGA+AGG | - | chr4.3:30992530-30992549 | None:intergenic | 20.0% |
!! | TACTATACATTTAATAATGC+TGG | + | chr4.3:30992544-30992563 | MS.gene031737:intron | 20.0% |
!!! | TTAAGTAGTAATAGGATTTT+AGG | + | chr4.3:30992401-30992420 | MS.gene031737:intron | 20.0% |
!!! | TTGTTGTGTTTGAAATATTT+AGG | - | chr4.3:30991891-30991910 | None:intergenic | 20.0% |
!!! | TTTTCACCTTTTCTTAATTA+GGG | + | chr4.3:30991963-30991982 | MS.gene031737:intron | 20.0% |
!!! | TTTTTCACCTTTTCTTAATT+AGG | + | chr4.3:30991962-30991981 | MS.gene031737:intron | 20.0% |
! | ATAACCAATTGGTAAATGTT+GGG | + | chr4.3:30992917-30992936 | MS.gene031737:CDS | 25.0% |
! | CAAAATCCAAAATATTGTCT+TGG | - | chr4.3:30993497-30993516 | None:intergenic | 25.0% |
! | GTAAAACCCTAATTAAGAAA+AGG | - | chr4.3:30991972-30991991 | None:intergenic | 25.0% |
! | GTAATTAGAGAAGTTACATT+CGG | + | chr4.3:30992149-30992168 | MS.gene031737:intron | 25.0% |
! | GTTCAGATCATATTAACTTA+TGG | + | chr4.3:30992005-30992024 | MS.gene031737:intron | 25.0% |
! | TAATTAGAGAAGTTACATTC+GGG | + | chr4.3:30992150-30992169 | MS.gene031737:intron | 25.0% |
! | TGTTAAAGAATATCAATAGG+CGG | + | chr4.3:30992716-30992735 | MS.gene031737:CDS | 25.0% |
!! | AATCCTGATCAAAATTTTGT+GGG | + | chr4.3:30993555-30993574 | MS.gene031737:CDS | 25.0% |
!! | CTTAATTGTAATTTGGTGAT+TGG | + | chr4.3:30992110-30992129 | MS.gene031737:intron | 25.0% |
!! | TTATGGACGAAGATTTTATT+AGG | + | chr4.3:30992022-30992041 | MS.gene031737:intron | 25.0% |
!! | TTGTATACTTTTAATCATGC+TGG | + | chr4.3:30992579-30992598 | MS.gene031737:intron | 25.0% |
!!! | AATTCTGGGAACAATTTTTT+AGG | + | chr4.3:30993706-30993725 | MS.gene031737:CDS | 25.0% |
!!! | AGTAATAGGATTTTAGGTTA+TGG | + | chr4.3:30992407-30992426 | MS.gene031737:intron | 25.0% |
!!! | ATCTTTTTTATTCACAAGCA+GGG | + | chr4.3:30992625-30992644 | MS.gene031737:intron | 25.0% |
!!! | CAAGACAATATTTTGGATTT+TGG | + | chr4.3:30993495-30993514 | MS.gene031737:CDS | 25.0% |
!!! | GATGAATGTTTTCTAAGAAT+TGG | + | chr4.3:30992264-30992283 | MS.gene031737:intron | 25.0% |
!!! | TATCTTTTTTATTCACAAGC+AGG | + | chr4.3:30992624-30992643 | MS.gene031737:intron | 25.0% |
AGTAAAGTAAGAACATACGT+AGG | - | chr4.3:30991943-30991962 | None:intergenic | 30.0% | |
ATATTTAGGCAAGATGTGTT+TGG | - | chr4.3:30991877-30991896 | None:intergenic | 30.0% | |
GAAGATTCAACAAGAAAAGA+TGG | + | chr4.3:30993818-30993837 | MS.gene031737:CDS | 30.0% | |
GAAGTTAAATGTAGTTCTCT+AGG | + | chr4.3:30993756-30993775 | MS.gene031737:CDS | 30.0% | |
GACTGCAATTAAGTAGTAAT+AGG | + | chr4.3:30992393-30992412 | MS.gene031737:intron | 30.0% | |
GATAACCAATTGGTAAATGT+TGG | + | chr4.3:30992916-30992935 | MS.gene031737:CDS | 30.0% | |
GTTAAGATAGTTACCCTATT+GGG | + | chr4.3:30992429-30992448 | MS.gene031737:intron | 30.0% | |
TAACTAATGAATCCCCAATA+GGG | - | chr4.3:30992445-30992464 | None:intergenic | 30.0% | |
TGTTAGAACTGAATTCTACA+CGG | + | chr4.3:30992357-30992376 | MS.gene031737:intron | 30.0% | |
TGTTGAATCTTCTTTGCTAA+TGG | - | chr4.3:30993810-30993829 | None:intergenic | 30.0% | |
TTAAGATAGTTACCCTATTG+GGG | + | chr4.3:30992430-30992449 | MS.gene031737:intron | 30.0% | |
! | ATCCTGATCAAAATTTTGTG+GGG | + | chr4.3:30993556-30993575 | MS.gene031737:CDS | 30.0% |
! | GAATCCTGATCAAAATTTTG+TGG | + | chr4.3:30993554-30993573 | MS.gene031737:CDS | 30.0% |
!! | AAATGTAGTTCTCTAGGATA+TGG | + | chr4.3:30993762-30993781 | MS.gene031737:CDS | 30.0% |
!! | GTTTTCTAAGAATTGGATGT+AGG | + | chr4.3:30992271-30992290 | MS.gene031737:intron | 30.0% |
!!! | ATGTTGTTTTTTGCAACTGA+AGG | + | chr4.3:30993997-30994016 | MS.gene031737:intron | 30.0% |
AACTGTTCATTTGCAACATC+TGG | - | chr4.3:30993200-30993219 | None:intergenic | 35.0% | |
AAGAGGATTATGTGGATTCT+TGG | - | chr4.3:30993118-30993137 | None:intergenic | 35.0% | |
AAGTGTTACACCAGAAACTT+GGG | - | chr4.3:30993316-30993335 | None:intergenic | 35.0% | |
AATCCACATAATCCTCTTGA+TGG | + | chr4.3:30993120-30993139 | MS.gene031737:CDS | 35.0% | |
AATGAAAATTCCAAGCTTCC+AGG | + | chr4.3:30993672-30993691 | MS.gene031737:CDS | 35.0% | |
ACAATCGACTGATAACCAAT+TGG | + | chr4.3:30992906-30992925 | MS.gene031737:CDS | 35.0% | |
ACTACTGCTATCTAATGGAA+TGG | - | chr4.3:30993286-30993305 | None:intergenic | 35.0% | |
AGGAATCAACGATGAATTCT+GGG | + | chr4.3:30993692-30993711 | MS.gene031737:CDS | 35.0% | |
ATATGGTTTGACTAAAGACC+AGG | + | chr4.3:30993779-30993798 | MS.gene031737:CDS | 35.0% | |
CAAGATGTGTTTGGAGAAAT+CGG | - | chr4.3:30991868-30991887 | None:intergenic | 35.0% | |
CATCAATAAGGAATGCATCA+AGG | - | chr4.3:30993251-30993270 | None:intergenic | 35.0% | |
CATTTGCAAACTGCAAAAAG+TGG | - | chr4.3:30992339-30992358 | None:intergenic | 35.0% | |
CTAACTAATGAATCCCCAAT+AGG | - | chr4.3:30992446-30992465 | None:intergenic | 35.0% | |
CTATTGGTCATACAACTTAC+AGG | - | chr4.3:30993393-30993412 | None:intergenic | 35.0% | |
CTTAAGCAAAACCTACGATA+TGG | + | chr4.3:30991770-30991789 | MS.gene031737:CDS | 35.0% | |
GAACGCGCTTAATTGTAATT+TGG | + | chr4.3:30992103-30992122 | MS.gene031737:intron | 35.0% | |
GATGAACTACTGCTATCTAA+TGG | - | chr4.3:30993291-30993310 | None:intergenic | 35.0% | |
GGTTAAGATAGTTACCCTAT+TGG | + | chr4.3:30992428-30992447 | MS.gene031737:intron | 35.0% | |
TAAAAAAGCAAGAAGGAGAG+AGG | - | chr4.3:30992523-30992542 | None:intergenic | 35.0% | |
TAACATTTCCAAGAGTTTCG+TGG | + | chr4.3:30992294-30992313 | MS.gene031737:intron | 35.0% | |
TGTAAATTCGGGAAATTCAG+CGG | - | chr4.3:30993466-30993485 | None:intergenic | 35.0% | |
TTTGCAGCCTCATTAATAGA+AGG | - | chr4.3:30993165-30993184 | None:intergenic | 35.0% | |
! | AAAGTGTTACACCAGAAACT+TGG | - | chr4.3:30993317-30993336 | None:intergenic | 35.0% |
! | AGCACACCAAGACAATATTT+TGG | + | chr4.3:30993488-30993507 | MS.gene031737:CDS | 35.0% |
! | CGCTCATGAAGGATTTTTAA+GGG | + | chr4.3:30992681-30992700 | MS.gene031737:CDS | 35.0% |
! | TAGGTTTTGCTTAAGAATGG+TGG | - | chr4.3:30991765-30991784 | None:intergenic | 35.0% |
! | TCGCTCATGAAGGATTTTTA+AGG | + | chr4.3:30992680-30992699 | MS.gene031737:CDS | 35.0% |
! | TCGTAGGTTTTGCTTAAGAA+TGG | - | chr4.3:30991768-30991787 | None:intergenic | 35.0% |
! | TGTAATTTGGTGATTGGAGA+GGG | + | chr4.3:30992116-30992135 | MS.gene031737:intron | 35.0% |
! | TTGGTGTGCTGTTGTAAATT+CGG | - | chr4.3:30993478-30993497 | None:intergenic | 35.0% |
! | TTGTAATTTGGTGATTGGAG+AGG | + | chr4.3:30992115-30992134 | MS.gene031737:intron | 35.0% |
!! | CCTTATTGATGATGTTCCTT+CGG | + | chr4.3:30993260-30993279 | MS.gene031737:CDS | 35.0% |
!! | GCTCATGAAGGATTTTTAAG+GGG | + | chr4.3:30992682-30992701 | MS.gene031737:CDS | 35.0% |
!! | TGATATCAGCTGTTTTGGAT+GGG | + | chr4.3:30993610-30993629 | MS.gene031737:CDS | 35.0% |
!! | TTGGATTTTGGTGAAGTTCA+AGG | + | chr4.3:30993507-30993526 | MS.gene031737:CDS | 35.0% |
AACCGAATCGATCGTTTCAT+GGG | + | chr4.3:30991806-30991825 | MS.gene031737:CDS | 40.0% | |
AAGAGGTTGAAAGGCTGAAA+AGG | + | chr4.3:30992836-30992855 | MS.gene031737:CDS | 40.0% | |
ACAAGAAAAGATGGAGCACA+TGG | + | chr4.3:30993827-30993846 | MS.gene031737:CDS | 40.0% | |
ACAGATGGAACTTCTTGCAT+CGG | + | chr4.3:30993863-30993882 | MS.gene031737:CDS | 40.0% | |
ACAGTAACAGTAACACTAGC+AGG | - | chr4.3:30992215-30992234 | None:intergenic | 40.0% | |
AGAGGTTGAAAGGCTGAAAA+GGG | + | chr4.3:30992837-30992856 | MS.gene031737:CDS | 40.0% | |
AGAGTCATCAACCATATCGT+AGG | - | chr4.3:30991784-30991803 | None:intergenic | 40.0% | |
AGGATTATGTGGATTCTTGG+TGG | - | chr4.3:30993115-30993134 | None:intergenic | 40.0% | |
AGTAATAGACATGTTACCGC+TGG | + | chr4.3:30993048-30993067 | MS.gene031737:CDS | 40.0% | |
ATACATGACTGCCCAGAAAT+AGG | - | chr4.3:30993351-30993370 | None:intergenic | 40.0% | |
ATGTTACCGCTGGTAAAAAG+AGG | + | chr4.3:30993058-30993077 | MS.gene031737:CDS | 40.0% | |
ATTTCCAAGAGTTTCGTGGA+AGG | + | chr4.3:30992298-30992317 | MS.gene031737:intron | 40.0% | |
CAAAGTCAAGATACTTGTCC+TGG | + | chr4.3:30992478-30992497 | MS.gene031737:intron | 40.0% | |
CAGGAATCAACGATGAATTC+TGG | + | chr4.3:30993691-30993710 | MS.gene031737:CDS | 40.0% | |
CCGAAGGAACATCATCAATA+AGG | - | chr4.3:30993263-30993282 | None:intergenic | 40.0% | |
CGGAAATCTACTCATGCAAA+TGG | + | chr4.3:30992736-30992755 | MS.gene031737:CDS | 40.0% | |
GAATGCATCAAGGTTCTTGA+TGG | - | chr4.3:30993241-30993260 | None:intergenic | 40.0% | |
GCAAATGAACAGTTCTGCAA+GGG | + | chr4.3:30993206-30993225 | MS.gene031737:CDS | 40.0% | |
GTACCAGCCTTCTATTAATG+AGG | + | chr4.3:30993155-30993174 | MS.gene031737:CDS | 40.0% | |
GTTACATTCGGGATGCATTT+CGG | + | chr4.3:30992161-30992180 | MS.gene031737:intron | 40.0% | |
GTTCCATCTGTTGAGTAAGA+TGG | - | chr4.3:30993854-30993873 | None:intergenic | 40.0% | |
GTTGCCCAACATTTACCAAT+TGG | - | chr4.3:30992924-30992943 | None:intergenic | 40.0% | |
TAAGTTTGGGCTTGATGAAG+AGG | + | chr4.3:30992819-30992838 | MS.gene031737:CDS | 40.0% | |
TATGACCAATAGCATGTCTG+AGG | + | chr4.3:30993401-30993420 | MS.gene031737:CDS | 40.0% | |
TCTTTGCTAATGGCAATTCC+TGG | - | chr4.3:30993800-30993819 | None:intergenic | 40.0% | |
TGCAAATGAACAGTTCTGCA+AGG | + | chr4.3:30993205-30993224 | MS.gene031737:CDS | 40.0% | |
TTAACAACACGTCCATCAAG+AGG | - | chr4.3:30993135-30993154 | None:intergenic | 40.0% | |
TTCTGGTGTAACACTTTCTG+AGG | + | chr4.3:30993320-30993339 | MS.gene031737:CDS | 40.0% | |
TTGTACCTCAGACATGCTAT+TGG | - | chr4.3:30993409-30993428 | None:intergenic | 40.0% | |
! | AATTTTCATGCATGCCTTGC+TGG | + | chr4.3:30994029-30994048 | MS.gene031737:intron | 40.0% |
! | CAAAATTTTGTGGGGTCTGT+CGG | + | chr4.3:30993564-30993583 | MS.gene031737:CDS | 40.0% |
! | CGGTGAGAATGATGATGAAT+TGG | + | chr4.3:30993584-30993603 | MS.gene031737:CDS | 40.0% |
! | GGATGTGATATCAGCTGTTT+TGG | + | chr4.3:30993605-30993624 | MS.gene031737:CDS | 40.0% |
! | TGCTAGTGTTACTGTTACTG+TGG | + | chr4.3:30992214-30992233 | MS.gene031737:intron | 40.0% |
! | TGGTGTGCTGTTGTAAATTC+GGG | - | chr4.3:30993477-30993496 | None:intergenic | 40.0% |
! | TTTTGGTGAAGTTCAAGGAC+TGG | + | chr4.3:30993512-30993531 | MS.gene031737:CDS | 40.0% |
!! | CAGAATTCATCGTTGATTCC+TGG | - | chr4.3:30993693-30993712 | None:intergenic | 40.0% |
!! | GACCCCACAAAATTTTGATC+AGG | - | chr4.3:30993561-30993580 | None:intergenic | 40.0% |
!! | GTGATATCAGCTGTTTTGGA+TGG | + | chr4.3:30993609-30993628 | MS.gene031737:CDS | 40.0% |
!! | TATTTCTGGGCAGTCATGTA+TGG | + | chr4.3:30993350-30993369 | MS.gene031737:CDS | 40.0% |
!!! | TCACAAGCAGGGTTTTAGAA+AGG | + | chr4.3:30992636-30992655 | MS.gene031737:intron | 40.0% |
AATGAACAGTTCTGCAAGGG+TGG | + | chr4.3:30993209-30993228 | MS.gene031737:CDS | 45.0% | |
ACCAACAACTAGAACCAGCA+AGG | - | chr4.3:30994046-30994065 | None:intergenic | 45.0% | |
ACCCCATGAAACGATCGATT+CGG | - | chr4.3:30991811-30991830 | None:intergenic | 45.0% | |
ACCGAATCGATCGTTTCATG+GGG | + | chr4.3:30991807-30991826 | MS.gene031737:CDS | 45.0% | |
AGCAAAGGCCATGAATAGTC+CGG | + | chr4.3:30992990-30993009 | MS.gene031737:CDS | 45.0% | |
AGTTCATCCACCCAAGTTTC+TGG | + | chr4.3:30993303-30993322 | MS.gene031737:CDS | 45.0% | |
CAACCGAATCGATCGTTTCA+TGG | + | chr4.3:30991805-30991824 | MS.gene031737:CDS | 45.0% | |
CAGCCTCATTAATAGAAGGC+TGG | - | chr4.3:30993161-30993180 | None:intergenic | 45.0% | |
CATTCCTTCCACGAAACTCT+TGG | - | chr4.3:30992305-30992324 | None:intergenic | 45.0% | |
CGTCCATCAAGAGGATTATG+TGG | - | chr4.3:30993126-30993145 | None:intergenic | 45.0% | |
CTATCTAATGGAATGGCCGA+AGG | - | chr4.3:30993279-30993298 | None:intergenic | 45.0% | |
GAAAATTGAGCCATGAAGCC+CGG | - | chr4.3:30993012-30993031 | None:intergenic | 45.0% | |
GACTATTCATGGCCTTTGCT+AGG | - | chr4.3:30992990-30993009 | None:intergenic | 45.0% | |
GATGATGTCGTTCCTAGCAA+AGG | + | chr4.3:30992975-30992994 | MS.gene031737:CDS | 45.0% | |
GATGTGTTTGGAGAAATCGG+TGG | - | chr4.3:30991865-30991884 | None:intergenic | 45.0% | |
GGACCATCTTACTCAACAGA+TGG | + | chr4.3:30993848-30993867 | MS.gene031737:CDS | 45.0% | |
GGCTTGATGAAGAGGTTGAA+AGG | + | chr4.3:30992827-30992846 | MS.gene031737:CDS | 45.0% | |
GGTGGAATTGAAAACGACGA+AGG | - | chr4.3:30991847-30991866 | None:intergenic | 45.0% | |
GTGTGGAAGTGGGTAAGTTT+GGG | + | chr4.3:30992806-30992825 | MS.gene031737:CDS | 45.0% | |
GTTCAATTGTCTGACGAAGC+TGG | - | chr4.3:30991919-30991938 | None:intergenic | 45.0% | |
TGCAAACTGCAAAAAGTGGC+TGG | - | chr4.3:30992335-30992354 | None:intergenic | 45.0% | |
TGCATCAAGGTTCTTGATGG+AGG | - | chr4.3:30993238-30993257 | None:intergenic | 45.0% | |
TGTGTGGAAGTGGGTAAGTT+TGG | + | chr4.3:30992805-30992824 | MS.gene031737:CDS | 45.0% | |
TGTTACACCAGAAACTTGGG+TGG | - | chr4.3:30993313-30993332 | None:intergenic | 45.0% | |
TTACCGCTGGTAAAAAGAGG+CGG | + | chr4.3:30993061-30993080 | MS.gene031737:CDS | 45.0% | |
TTTGGATGGGACACAGTCTT+TGG | + | chr4.3:30993623-30993642 | MS.gene031737:CDS | 45.0% | |
! | CTGAGGTTCCACCTATTTCT+GGG | + | chr4.3:30993337-30993356 | MS.gene031737:CDS | 45.0% |
! | TCTGAGGTTCCACCTATTTC+TGG | + | chr4.3:30993336-30993355 | MS.gene031737:CDS | 45.0% |
!! | ATCGTTGATTCCTGGAAGCT+TGG | - | chr4.3:30993685-30993704 | None:intergenic | 45.0% |
AACTATCTTCTTCCTGCCCC+TGG | - | chr4.3:30993089-30993108 | None:intergenic | 50.0% | |
ACAGAGTCAGTCAACACAGC+AGG | - | chr4.3:30993438-30993457 | None:intergenic | 50.0% | |
ACATTCATCGGTACACCGAG+CGG | - | chr4.3:30992253-30992272 | None:intergenic | 50.0% | |
ACTTCCACACATGACCCAAC+AGG | - | chr4.3:30992796-30992815 | None:intergenic | 50.0% | |
AGATACTTGTCCTGGTGCTC+TGG | + | chr4.3:30992486-30992505 | MS.gene031737:intron | 50.0% | |
CATGAAGCCCGGACTATTCA+TGG | - | chr4.3:30993001-30993020 | None:intergenic | 50.0% | |
CATGAATAGTCCGGGCTTCA+TGG | + | chr4.3:30992999-30993018 | MS.gene031737:CDS | 50.0% | |
CATGACTGCCCAGAAATAGG+TGG | - | chr4.3:30993348-30993367 | None:intergenic | 50.0% | |
CGTCTGTGTCTCCAGTAAGT+GGG | - | chr4.3:30993737-30993756 | None:intergenic | 50.0% | |
CTTCATGAGCGAATTCCCAG+CGG | - | chr4.3:30992672-30992691 | None:intergenic | 50.0% | |
GCAAAGGCCATGAATAGTCC+GGG | + | chr4.3:30992991-30993010 | MS.gene031737:CDS | 50.0% | |
GTTGGGTCATGTGTGGAAGT+GGG | + | chr4.3:30992796-30992815 | MS.gene031737:CDS | 50.0% | |
TCGTCTGTGTCTCCAGTAAG+TGG | - | chr4.3:30993738-30993757 | None:intergenic | 50.0% | |
TGTTGGGTCATGTGTGGAAG+TGG | + | chr4.3:30992795-30992814 | MS.gene031737:CDS | 50.0% | |
TTTAGGCCAAGCCCACTTAC+TGG | + | chr4.3:30993723-30993742 | MS.gene031737:CDS | 50.0% | |
! | AAATTCAGCACCAGAGCACC+AGG | - | chr4.3:30992499-30992518 | None:intergenic | 50.0% |
!! | GCCTTGCTGGTTCTAGTTGT+TGG | + | chr4.3:30994042-30994061 | MS.gene031737:intron | 50.0% |
ATGAGCGAATTCCCAGCGGT+CGG | - | chr4.3:30992668-30992687 | None:intergenic | 55.0% | |
CCACACATGACCCAACAGGT+GGG | - | chr4.3:30992792-30992811 | None:intergenic | 55.0% | |
CGCTGGGAATTCGCTCATGA+AGG | + | chr4.3:30992670-30992689 | MS.gene031737:CDS | 55.0% | |
GGTAAAAAGAGGCGGCTCCA+GGG | + | chr4.3:30993069-30993088 | MS.gene031737:CDS | 55.0% | |
GTAAAAAGAGGCGGCTCCAG+GGG | + | chr4.3:30993070-30993089 | MS.gene031737:CDS | 55.0% | |
TCCACACATGACCCAACAGG+TGG | - | chr4.3:30992793-30992812 | None:intergenic | 55.0% | |
TGGGCAACGTGTGCAAGTGA+TGG | + | chr4.3:30992936-30992955 | MS.gene031737:CDS | 55.0% | |
TGGTAAAAAGAGGCGGCTCC+AGG | + | chr4.3:30993068-30993087 | MS.gene031737:CDS | 55.0% | |
! | GAGCCGCCTCTTTTTACCAG+CGG | - | chr4.3:30993067-30993086 | None:intergenic | 55.0% |
! | GTGTCTCCAGTAAGTGGGCT+TGG | - | chr4.3:30993732-30993751 | None:intergenic | 55.0% |
AAAGGTTGACCCCGACCGCT+GGG | + | chr4.3:30992654-30992673 | MS.gene031737:CDS | 60.0% | |
AAGCCGCAGAACCCACCTGT+TGG | + | chr4.3:30992778-30992797 | MS.gene031737:CDS | 60.0% | |
AGCCGCAGAACCCACCTGTT+GGG | + | chr4.3:30992779-30992798 | MS.gene031737:CDS | 60.0% | |
CCCACCTGTTGGGTCATGTG+TGG | + | chr4.3:30992789-30992808 | MS.gene031737:CDS | 60.0% | |
GGTGATTGGAGAGGGAGCTG+TGG | + | chr4.3:30992124-30992143 | MS.gene031737:intron | 60.0% | |
TGAGCGAATTCCCAGCGGTC+GGG | - | chr4.3:30992667-30992686 | None:intergenic | 60.0% | |
! | GACCCAACAGGTGGGTTCTG+CGG | - | chr4.3:30992784-30992803 | None:intergenic | 60.0% |
CGGTACACCGAGCGGAAGCA+TGG | - | chr4.3:30992245-30992264 | None:intergenic | 65.0% | |
GAAAGGTTGACCCCGACCGC+TGG | + | chr4.3:30992653-30992672 | MS.gene031737:CDS | 65.0% | |
GAGCGAATTCCCAGCGGTCG+GGG | - | chr4.3:30992666-30992685 | None:intergenic | 65.0% | |
! | GGTGCTGCCATGCTTCCGCT+CGG | + | chr4.3:30992235-30992254 | MS.gene031737:intron | 65.0% |
AAAGAGGCGGCTCCAGGGGC+AGG | + | chr4.3:30993074-30993093 | MS.gene031737:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 30991732 | 30994076 | 30991732 | ID=MS.gene031737 |
chr4.3 | mRNA | 30991732 | 30994076 | 30991732 | ID=MS.gene031737.t1;Parent=MS.gene031737 |
chr4.3 | exon | 30991732 | 30991944 | 30991732 | ID=MS.gene031737.t1.exon1;Parent=MS.gene031737.t1 |
chr4.3 | CDS | 30991732 | 30991944 | 30991732 | ID=cds.MS.gene031737.t1;Parent=MS.gene031737.t1 |
chr4.3 | exon | 30992646 | 30993895 | 30992646 | ID=MS.gene031737.t1.exon2;Parent=MS.gene031737.t1 |
chr4.3 | CDS | 30992646 | 30993895 | 30992646 | ID=cds.MS.gene031737.t1;Parent=MS.gene031737.t1 |
chr4.3 | exon | 30994058 | 30994076 | 30994058 | ID=MS.gene031737.t1.exon3;Parent=MS.gene031737.t1 |
chr4.3 | CDS | 30994058 | 30994076 | 30994058 | ID=cds.MS.gene031737.t1;Parent=MS.gene031737.t1 |
Gene Sequence |
Protein sequence |