AlfalfaGEDB | MS.gene031839

M. sativa cultivar XinJiangDaYe / MS.gene031839

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031839.t1	XP_003607287.1	90.7	300	27	1	1	300	1	299	1.40E-155	558.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031839.t1	Q10S65	75.6	164	33	2	16	172	18	181	1.0e-69	265.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031839.t1	G7JPL7	90.7	300	27	1	1	300	1	299	1.0e-155	558.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene031839.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031839.t1	MTR_4g075980	97.333	300	7	1	1	300	1	299	0.0	607
MS.gene031839.t1	MTR_4g134460	53.947	152	65	2	14	162	53	202	1.75e-55	186
MS.gene031839.t1	MTR_8g467490	45.771	201	89	5	4	188	1	197	1.06e-52	177
MS.gene031839.t1	MTR_6g011860	46.231	199	88	5	16	199	16	210	3.61e-52	176
MS.gene031839.t1	MTR_5g040420	43.684	190	90	3	12	188	11	196	2.95e-49	168
MS.gene031839.t1	MTR_2g093810	39.056	233	120	4	17	237	16	238	3.42e-47	161
MS.gene031839.t1	MTR_5g012080	41.791	201	105	5	17	207	9	207	2.40e-46	159
MS.gene031839.t1	MTR_2g080010	40.000	210	104	5	6	198	5	209	4.87e-46	159
MS.gene031839.t1	MTR_5g090970	36.910	233	124	4	12	221	15	247	1.31e-45	156
MS.gene031839.t1	MTR_7g085220	43.229	192	89	4	9	180	1	192	1.46e-45	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031839.t1	AT2G17040	60.140	286	96	7	14	297	5	274	1.00e-110	322
MS.gene031839.t1	AT2G02450	53.642	151	65	2	14	161	50	198	1.42e-56	187
MS.gene031839.t1	AT2G02450	53.642	151	65	2	14	161	50	198	1.56e-56	188
MS.gene031839.t1	AT5G39820	58.647	133	54	1	12	144	17	148	3.23e-52	174
MS.gene031839.t1	AT1G26870	44.393	214	90	6	12	209	13	213	5.68e-49	168
MS.gene031839.t1	AT1G62700	47.134	157	74	3	17	167	9	162	1.44e-46	161
MS.gene031839.t1	AT1G62700	47.134	157	74	3	17	167	9	162	1.44e-46	161
MS.gene031839.t1	AT3G10480	51.316	152	64	3	17	161	29	177	5.86e-46	161
MS.gene031839.t1	AT3G10480	51.634	153	63	4	17	161	29	178	1.13e-45	160
MS.gene031839.t1	AT4G27410	50.633	158	69	5	13	164	11	165	3.72e-45	155

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Find 76 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCGTTATGATGTCAT+TGG	0.391717	4.3:-32280651	MS.gene031839:CDS
AAAGGAGATTGTGTCCGTAG+AGG	0.637647	4.3:+32279028	None:intergenic
AAAGGTTTCTGGAAAGCCAC+CGG	0.569247	4.3:-32280360	MS.gene031839:CDS
AAGAAGGTGGGGAAGATGTA+GGG	0.391402	4.3:+32279051	None:intergenic
AAGAGGAACCAAGACTGATT+GGG	0.506930	4.3:-32280250	MS.gene031839:CDS
AATAATTAAAACTGAAGACA+TGG	0.594981	4.3:-32278925	MS.gene031839:CDS
AATCGGGTTGAGGAAGACGT+TGG	0.622308	4.3:-32280295	MS.gene031839:CDS
AATGACTTGTTGAAACAATA+AGG	0.289381	4.3:+32278971	None:intergenic
AATTGTGAAAGATAATAAAA+AGG	0.367531	4.3:-32278880	MS.gene031839:CDS
ACATCTTTGCAATTGCCCTT+AGG	0.396815	4.3:-32278849	MS.gene031839:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAACATGACACTTCAT+AGG	-	chr4.3:32279845-32279864	MS.gene031839:intron	30.0%
AAACTTCGTTATGATGTCAT+TGG	-	chr4.3:32278842-32278861	MS.gene031839:CDS	30.0%
AAAGAAACGAAAGGTTCATA+AGG	+	chr4.3:32280171-32280190	None:intergenic	30.0%
AAATTTCCATGAAGATAGCT+AGG	-	chr4.3:32280109-32280128	MS.gene031839:intron	30.0%
AAGAAACGAAAGGTTCATAA+GGG	+	chr4.3:32280170-32280189	None:intergenic	30.0%
AGAAGAAGAGATGAAACAAA+TGG	-	chr4.3:32280412-32280431	MS.gene031839:CDS	30.0%
ATATACAATACCTTAGGCAA+GGG	+	chr4.3:32279301-32279320	None:intergenic	30.0%
ATATAGGTTTGTCAAAGGTT+GGG	-	chr4.3:32279035-32279054	MS.gene031839:CDS	30.0%
TATATACAATACCTTAGGCA+AGG	+	chr4.3:32279302-32279321	None:intergenic	30.0%
TATATAGGTTTGTCAAAGGT+TGG	-	chr4.3:32279034-32279053	MS.gene031839:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	32278722	32280793	32278722	ID=MS.gene031839
chr4.3	mRNA	32278722	32280793	32278722	ID=MS.gene031839.t1;Parent=MS.gene031839
chr4.3	exon	32280610	32280793	32280610	ID=MS.gene031839.t1.exon1;Parent=MS.gene031839.t1
chr4.3	CDS	32280610	32280793	32280610	ID=cds.MS.gene031839.t1;Parent=MS.gene031839.t1
chr4.3	exon	32280206	32280474	32280206	ID=MS.gene031839.t1.exon2;Parent=MS.gene031839.t1
chr4.3	CDS	32280206	32280474	32280206	ID=cds.MS.gene031839.t1;Parent=MS.gene031839.t1
chr4.3	exon	32278722	32279171	32278722	ID=MS.gene031839.t1.exon3;Parent=MS.gene031839.t1
chr4.3	CDS	32278722	32279171	32278722	ID=cds.MS.gene031839.t1;Parent=MS.gene031839.t1

Gene Sequence

>MS.gene031839

ATGGCATCAATGGAGGACATCAACATGTGTACTGAACAAATTACACTTCCAGGATTCAGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAGAATATGGTTGTTGGCAAAAAACTTCGTTATGATGTCATTGGTTTTCTAAATATCTATCACCATGATCCTTGTGACTTGCCAGGTATAGTGCTAATCAATCAATTCCTAGTATCATATTATGTGTTACGTATTTTCCTAGACATTAATTTAATTTGAAATTATAGTGACTATTTTGATATATATTAATAAAATTATGAATGTTTTGCATGATATATAGGTTTGTCAAAGGTTGGGGAAAGAGAATGGTATTTTTCCGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAATCGCACAACTGAGAAAGGTTTCTGGAAAGCCACCGGTTCGGACCGGAAAATCGTGACGTTATCGGATCCGAAACGCATAATCGGGTTGAGGAAGACGTTGGTTTTCTATGAGGGAAGAGCTCCAAGAGGAACCAAGACTGATTGGGTTATGAATGAATACCGTTTACCTGACAATAGCCCCTTGCCTAAGGTATTGTATATATATCTTTCTTCATTTGAATTTGAACTATATAGTCTACATTAGACCCATTCTGTAGTATATTTTTGGTTCCTATCATACGATGACTAATTGACCATAACCATATAAGCTTTAACTATGAATGAATGTGAGTAAAGTTTTAGATTCATGCCCATGTGATTTTGATATATATCACGGGTTTATGTCATTTGATTTACATTGTTCGTTAATTTATCCTTCATTCAATGTAAAAAAAAATGGGAAGGAGAAAATTATTGTTAGTTAAAGTAATATTTTGTAATCATTTTATAATGTACTAGTTATAAACTTAAAATCTTATTACTAAAATCAAAATTCATAAACCAAGTGATTGAACTCAAGTGGTTAATGAGCTCCTCATAGAACGAATTGTTCGAGAAAACCTGAGTTCGATTTCAAGTGAAAACAATTATTAGTCAGACTTTGCTTACATCTCTACCAAACTCCAGATTACTAGGATCATTTTCCCCTAGGAACCGGACTCGTAATCCAGAGGGTTAAAACCAAAAAACAAACATGACACTTCATAGGAAAATAATAATAAGTTCCTTCATTCAATTATATATAGTTCATTGATTTATTCATAATTTCTTACAAGATGATATGCTTGCTTTGTTATGGCCAGATTCTCCCAAATAACATGGGAATCTTTTTTACTTTTTTCACAAGAGGGAATTTGTTTATTTTAGTCACAAATTGGACTAGCTAGGAGTTAATTTTTATAGGTAGAAGTGAATAAATAATTAACGTGCATATCTCTTACATGGAAGGGAAATTTCCATGAAGATAGCTAGGTAGTGACACTTTCTTTCTGTACAAGTATTGTGGTCCCCTTATGAACCTTTCGTTTCTTTCATGATGAAGTTCCAATTAAGACTTGCAACTAATTAAGATTAAATGTCTTCAAATTTCAAGCAAACATAAACTAATGAAATTGGTTTACTATTTCTACTTACAGCAAAAAAAAAAAAAAAATACTAATATATGCCATGGTACGTATGTGACAGGACATAGTATTATGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTTGAACAAAGAGCAGCAGAAGAAGAAGAGATGAAACAAATGGTGGGTTCCCCTACATCTTCCCCACCTTCTTCCTCTACGGACACAATCTCCTTTAACTACACACAACAAGACCAACACGTGTCCATGCCCTTATTGTTTCAACAAGTCATTCCTAAGAAAGAATCTGAACATGAAATAATTAAAACTGAAGACATGGTTTCTTTGTCAAGTCATGAAAAAATTGTGAAAGATAATAAAAAGGCTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTACCTGAACTTCAGTTACCTATAGCTGCAGATTGGACCCAAGATACATTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAACTGGAGTGCTTACACTAATATCCTGAATTTTTAA

Protein sequence

>MS.gene031839.t1

MASMEDINMCTEQITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPCDLPGLSKVGEREWYFSVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMVGSPTSSPPSSSTDTISFNYTQQDQHVSMPLLFQQVIPKKESEHEIIKTEDMVSLSSHEKIVKDNKKACGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWSAYTNILNF