AlfalfaGEDB | MS.gene031866

M. sativa cultivar XinJiangDaYe / MS.gene031866

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031866.t1	XP_003601079.1	89.8	880	17	2	1	808	1	879	0.00E+00	1508.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031866.t1	O65238	53.1	853	322	15	26	808	28	872	3.1e-238	826.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031866.t1	G7J3J6	89.8	880	17	2	1	808	1	879	0.0e+00	1508.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031866.t1	MTR_3g072800	89.318	880	21	4	1	808	1	879	0.0	1590
MS.gene031866.t1	MTR_3g107070	36.091	834	430	18	28	808	15	798	6.53e-157	477
MS.gene031866.t1	MTR_2g080080	35.162	802	415	16	7	755	16	765	7.40e-153	466
MS.gene031866.t1	MTR_1g012550	35.638	839	430	19	28	808	39	825	9.08e-151	462
MS.gene031866.t1	MTR_2g073250	36.224	784	393	17	28	755	37	769	1.56e-147	452
MS.gene031866.t1	MTR_2g103810	33.373	845	437	23	28	808	33	815	3.88e-131	410
MS.gene031866.t1	MTR_2g080100	33.842	786	373	20	28	755	38	734	6.83e-129	403
MS.gene031866.t1	MTR_2g080090	31.439	792	425	20	7	755	16	732	2.00e-109	351
MS.gene031866.t1	MTR_8g030500	33.458	804	413	25	30	751	11	774	1.75e-104	341
MS.gene031866.t1	MTR_1g099400	37.872	470	227	11	308	754	385	812	1.67e-89	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031866.t1	AT5G35370	51.843	868	333	17	13	808	18	872	0.0	857
MS.gene031866.t1	AT4G32300	35.100	849	427	16	28	808	29	821	6.43e-154	470
MS.gene031866.t1	AT2G19130	32.721	816	400	28	26	752	24	779	1.84e-95	317
MS.gene031866.t1	AT4G00340	30.620	774	416	17	47	744	33	761	9.19e-95	315
MS.gene031866.t1	AT4G00340	31.079	769	398	19	47	744	33	740	1.32e-94	313
MS.gene031866.t1	AT1G34300	32.478	779	393	28	49	751	44	765	9.91e-94	312
MS.gene031866.t1	AT5G24080	38.701	385	188	7	380	754	346	692	2.43e-84	285
MS.gene031866.t1	AT5G24080	38.701	385	188	7	380	754	346	692	2.43e-84	285
MS.gene031866.t1	AT5G24080	38.701	385	188	7	380	754	473	819	2.83e-83	285
MS.gene031866.t1	AT5G20050	39.164	383	187	8	388	751	42	397	3.05e-74	249

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Find 155 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATATAGTTT+TGG	0.289749	3.3:+63074690	MS.gene031866:CDS
AAAAGCTACTAATAGTAAAT+TGG	0.295747	3.3:-63073363	None:intergenic
AAAATTTATGATTAGTTTCA+TGG	0.245159	3.3:-63072594	None:intergenic
AAACCGGATGTCCACCGAAT+AGG	0.428814	3.3:-63074407	None:intergenic
AAACTCACTCCAAACATAAT+TGG	0.254000	3.3:-63073706	None:intergenic
AAACTTGTTTGTTGATTACC+AGG	0.514565	3.3:-63072776	None:intergenic
AAAGACTCCATCCTAGGTTG+TGG	0.558148	3.3:-63075047	None:intergenic
AAAGATGGATTTCCTGTTAT+TGG	0.133237	3.3:+63073916	MS.gene031866:CDS
AAAGCTTTCACTCACTGAGA+TGG	0.521134	3.3:+63072967	MS.gene031866:CDS
AAATGATGATGTTGAATACA+TGG	0.567348	3.3:+63073231	MS.gene031866:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAATGATCCCACCAAT+TGG	-	chr3.3:63073955-63073974	None:intergenic	30.0%
AAACTCACTCCAAACATAAT+TGG	-	chr3.3:63073709-63073728	None:intergenic	30.0%
ACAAAAGAGTTACATGGATT+TGG	+	chr3.3:63074881-63074900	MS.gene031866:CDS	30.0%
ACTAATAGTAAATTGGCCAT+CGG	-	chr3.3:63073359-63073378	None:intergenic	30.0%
ATATCTTCACAACAAATCTC+AGG	+	chr3.3:63075197-63075216	MS.gene031866:CDS	30.0%
ATGATCTGAAAATGTGTAAG+CGG	-	chr3.3:63072657-63072676	None:intergenic	30.0%
CAAGTTCATGTATATCAAGT+TGG	+	chr3.3:63073295-63073314	MS.gene031866:CDS	30.0%
GATAATTTCAAGACTCTGAT+AGG	+	chr3.3:63074153-63074172	MS.gene031866:CDS	30.0%
GTCTAGAAACAAAACATTCA+AGG	+	chr3.3:63072739-63072758	MS.gene031866:CDS	30.0%
GTTAACTTAGTTAGACTCAA+AGG	+	chr3.3:63074315-63074334	MS.gene031866:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	63072596	63075229	63072596	ID=MS.gene031866
chr3.3	mRNA	63072596	63075229	63072596	ID=MS.gene031866.t1;Parent=MS.gene031866
chr3.3	exon	63072596	63073460	63072596	ID=MS.gene031866.t1.exon1;Parent=MS.gene031866.t1
chr3.3	CDS	63072596	63073460	63072596	ID=cds.MS.gene031866.t1;Parent=MS.gene031866.t1
chr3.3	exon	63073668	63075229	63073668	ID=MS.gene031866.t1.exon2;Parent=MS.gene031866.t1
chr3.3	CDS	63073668	63075229	63073668	ID=cds.MS.gene031866.t1;Parent=MS.gene031866.t1

Gene Sequence

>MS.gene031866

ATGAAACTAATCATAAATTTTTCTACCGCTATTTTCCTTTTGTTTACTACTTCTATATCCGCTTACACATTTTCAGATCATATCACACCGAATTTCACTGCCTCATATCTTCAATTCATCGCTAACACCGGAACATTTTTGTTGTCTAGAAACAAAACATTCAAGGCAGCTATATTCAATCCTGGTAATCAACAAACAAGTTTCTATCTATGCATCATACATGCCGCGTCAAACACGATCATTTGGTCTGCTAACCGCGACGCACCCATCTCAGATTCCGATACAGTGAAACTAACTGTCGAAGGGATTACAATATTTGACAAAAATGGAAATTCTAAATGGTCAACACCACCACTTAAATCACAAGTACAAAAGCTTTCACTCACTGAGATGGGAAACCTTGTGTTACTTGATCAATCCAATGGTTCTCTTTGGGAAAGTTTTCAACATCCAACCGATACAATCGTTATTGGACAACGATTATCGGTTGGAGCATCATTGTCAAGTGCTTCATCCAATTCAAATTTGTCAACAGGAAATTACAAGCTGACAATAACTTCTTCTGATGCAATACTTCAATGGCATGGACAAACATATTGGAAAATTTCAATGGATTCAAAAGCTTACAAGAATTCAAATGATGATGTTGAATACATGGCAGTAAACACAACAGGTTTTTATCTCTTTGGACATAATGAACAAGTTCATGTATATCAAGTTGGTTTATCAGTAGCCAATTTTCGTGTCGCGAAATTGGCTTCCGATGGCCAATTTACTATTAGTAGCTTTTCAGGAACAAATTTAAAGCAGGAATTTGTTGGACCAGATGATGGTTGTCAAATTCCATTAGCTTGTGGAAGAATAGGTTTATGTAATGACAATAGTTTATCATCATCATCTTCTTCTTCTTCACCTGTTTGTTCTTGTCCTTCAAATTTCCATGTTGCATCGGGTAATCTTCGTGGTTGTGTTCCGAACGATGGGTCTCGTACTTTGCCATTAGCTTGTAATTCTTCAACCAATAATAATCATAGTCAGTCAAATTCTTCAGTTGTTTCATTTTTGAATATAGGCTATGGTGTGAGGTACTTTGGAAATATTTATTCTGATCCAATTATGTTTGGAGTGAGTTTATCTGATTGTCAAGGTCATTGTTCAAGTAACTGTTCTTGTTTGGGAATTTTGTATAGAAATTCTTCAGGATCATGCTATGTAATTGAAAATGAGTTAGGATCCATTAGTAATGGAGGTGAAGGTGACATGTTAGGTTTGATTAAAGTTAATGTTAGCCATGATATTGAAAATGAACAAAATTCTCAAAAAGATGGATTTCCTGTTATTGGTGCAGTGCTAATACCAATTGGTGGGATCATTTTTTTATTGGCTCTTGTTTTTTTTCTTATGTGGAGAAAATTTACAAAGTCGAAAAAACAAGAGGTGAAATTAGGGAAACAAATCTCAATCTCACAACATTCTTCAGGGGACTTGGATCATAATGACTTTTACATTCCTGGTTTACCGACGAGGTTTGATTACGAAGAACTTGAGGTAGCTACTGATAATTTCAAGACTCTGATAGGATCTGGTGCATTCGGCGTAGTGTACAAAGGTGTACTACCTGATAAGACTATTGTGGCAGTTAAGAAAATAATCAACATTGGAATTCAAGGGAGGAAAGATTTCTTCGCCGAGATTGCTGTTATTGGAAACATTCACCATGTTAACTTAGTTAGACTCAAAGGCTTTTGTGCTCAAAGGGGACACCGAATGTTGGTGTACGAGTACATGAACCGCGGTTCACTAGATCGGAACCTATTCGGTGGACATCCGGTTTTGGAATGGCAAGAGAGGTGTGATGTTGCCCTTGGAACAGCGCGCGGACTTGCTTATCTTCACAGTGGATGTGAGCAAAAGATAATTCACTGTGATATCAAACCAGAGAATATTCTTCTGCATGATCAATTTCAAGCTAAGATATCTGATTTTGGACTTTCGAAACTCCTTAGTCCAGAACAATCTGGTTTGTTCACAACAATGAGAGGAACTCGTGGTTATCTTGCTCCGGAATGGCTTACAAATTCAGCAATTTCTGAGAAAACTGATGTATATAGTTTTGGAATGGTGCTTCTTGAATTGGTTAGTGGAAGGAAAAATTGTTCTTTCAAGTCAAGAAGTCATAGCATAGATGATGATCATAACAACAGCAGTGGTAATAATGGAAATTCATCAAACTCATCAACAACAGGACTTGTTTATTTTCCACTATATGCATTAGAAATGCATGAACAAAAGAGTTACATGGATTTGGCTGATCCAAGGTTAGAAGGACGTGTTACAATAGATGAAGTGGAGAAACTCGTTCGTATTGCATTGTGTTGTGTTCATGAAGATCCATCACTTAGGCCTAACATGGTTACAGTTGTTGGAATGTTGGAAGGTGGAACTCCATTGCCACAACCTAGGATGGAGTCTTTGAATTTCTTGAGGTTCTATGGTCGTAGGTTTTCTGAGGCTTCTGTTATAGCAGAAGAGAATGAGCATGGTTCTGTGAGGATTCAACAACCGCGTGATTCAACCCGCTTCGTTAGCGGATTTTCTTACATATCTTCACAACAAATCTCAGGACCAAGATAG

Protein sequence

>MS.gene031866.t1

MKLIINFSTAIFLLFTTSISAYTFSDHITPNFTASYLQFIANTGTFLLSRNKTFKAAIFNPGNQQTSFYLCIIHAASNTIIWSANRDAPISDSDTVKLTVEGITIFDKNGNSKWSTPPLKSQVQKLSLTEMGNLVLLDQSNGSLWESFQHPTDTIVIGQRLSVGASLSSASSNSNLSTGNYKLTITSSDAILQWHGQTYWKISMDSKAYKNSNDDVEYMAVNTTGFYLFGHNEQVHVYQVGLSVANFRVAKLASDGQFTISSFSGTNLKQEFVGPDDGCQIPLACGRIGYGVRYFGNIYSDPIMFGVSLSDCQGHCSSNCSCLGILYRNSSGSCYVIENELGSISNGGEGDMLGLIKVNVSHDIENEQNSQKDGFPVIGAVLIPIGGIIFLLALVFFLMWRKFTKSKKQEVKLGKQISISQHSSGDLDHNDFYIPGLPTRFDYEELEVATDNFKTLIGSGAFGVVYKGVLPDKTIVAVKKIINIGIQGRKDFFAEIAVIGNIHHVNLVRLKGFCAQRGHRMLVYEYMNRGSLDRNLFGGHPVLEWQERCDVALGTARGLAYLHSGCEQKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRKNCSFKSRSHSIDDDHNNSSGNNGNSSNSSTTGLVYFPLYALEMHEQKSYMDLADPRLEGRVTIDEVEKLVRIALCCVHEDPSLRPNMVTVVGMLEGGTPLPQPRMESLNFLRFYGRRFSEASVIAEENEHGSVRIQQPRDSTRFVSGFSYISSQQISGPR