Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031929.t1 | XP_003600972.1 | 99.4 | 160 | 0 | 1 | 1 | 160 | 1 | 159 | 1.00E-83 | 319.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031929.t1 | Q8LBW3 | 80.6 | 129 | 23 | 1 | 1 | 129 | 1 | 127 | 6.0e-53 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031929.t1 | G7J2B8 | 99.4 | 160 | 0 | 1 | 1 | 160 | 1 | 159 | 7.3e-84 | 319.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031929.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031929.t1 | MTR_3g071590 | 99.375 | 160 | 0 | 1 | 1 | 160 | 1 | 159 | 5.14e-117 | 327 |
| MS.gene031929.t1 | MTR_5g083230 | 75.155 | 161 | 32 | 4 | 1 | 157 | 1 | 157 | 3.68e-81 | 237 |
| MS.gene031929.t1 | MTR_3g031660 | 65.359 | 153 | 41 | 1 | 3 | 143 | 2 | 154 | 7.22e-70 | 209 |
| MS.gene031929.t1 | MTR_2g068760 | 75.455 | 110 | 27 | 0 | 4 | 113 | 9 | 118 | 1.12e-57 | 177 |
| MS.gene031929.t1 | MTR_4g083680 | 60.811 | 148 | 48 | 3 | 2 | 145 | 5 | 146 | 6.00e-57 | 176 |
| MS.gene031929.t1 | MTR_2g093310 | 63.063 | 111 | 41 | 0 | 7 | 117 | 32 | 142 | 1.37e-50 | 160 |
| MS.gene031929.t1 | MTR_4g060950 | 65.179 | 112 | 38 | 1 | 7 | 117 | 23 | 134 | 1.13e-49 | 158 |
| MS.gene031929.t1 | MTR_1g095850 | 71.287 | 101 | 29 | 0 | 9 | 109 | 73 | 173 | 1.84e-48 | 156 |
| MS.gene031929.t1 | MTR_5g083960 | 67.619 | 105 | 34 | 0 | 4 | 108 | 35 | 139 | 6.14e-48 | 154 |
| MS.gene031929.t1 | MTR_3g094690 | 63.393 | 112 | 41 | 0 | 4 | 115 | 43 | 154 | 4.89e-47 | 153 |
| MS.gene031929.t1 | MTR_7g033800 | 59.829 | 117 | 43 | 1 | 5 | 117 | 8 | 124 | 4.03e-46 | 148 |
| MS.gene031929.t1 | MTR_6g005080 | 51.748 | 143 | 59 | 3 | 3 | 145 | 5 | 137 | 4.04e-46 | 147 |
| MS.gene031929.t1 | MTR_3g077240 | 66.346 | 104 | 35 | 0 | 6 | 109 | 8 | 111 | 8.16e-46 | 148 |
| MS.gene031929.t1 | MTR_6g005070 | 53.191 | 141 | 56 | 3 | 5 | 145 | 6 | 136 | 8.26e-46 | 147 |
| MS.gene031929.t1 | MTR_4g105170 | 66.019 | 103 | 35 | 0 | 7 | 109 | 10 | 112 | 1.20e-45 | 148 |
| MS.gene031929.t1 | MTR_3g073690 | 61.111 | 108 | 42 | 0 | 1 | 108 | 2 | 109 | 2.12e-45 | 147 |
| MS.gene031929.t1 | MTR_3g094690 | 62.500 | 112 | 41 | 1 | 4 | 115 | 43 | 153 | 1.89e-44 | 146 |
| MS.gene031929.t1 | MTR_3g071420 | 63.366 | 101 | 37 | 0 | 5 | 105 | 11 | 111 | 1.75e-42 | 139 |
| MS.gene031929.t1 | MTR_5g075020 | 66.038 | 106 | 36 | 0 | 4 | 109 | 39 | 144 | 1.97e-42 | 141 |
| MS.gene031929.t1 | MTR_3g452660 | 59.048 | 105 | 43 | 0 | 4 | 108 | 3 | 107 | 2.81e-42 | 142 |
| MS.gene031929.t1 | MTR_5g075020 | 66.038 | 106 | 36 | 0 | 4 | 109 | 43 | 148 | 3.01e-42 | 140 |
| MS.gene031929.t1 | MTR_5g017950 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 9.37e-42 | 142 |
| MS.gene031929.t1 | MTR_5g083010 | 62.376 | 101 | 38 | 0 | 5 | 105 | 8 | 108 | 2.25e-41 | 136 |
| MS.gene031929.t1 | MTR_7g096530 | 56.604 | 106 | 45 | 1 | 4 | 108 | 10 | 115 | 2.62e-37 | 127 |
| MS.gene031929.t1 | MTR_8g040900 | 59.615 | 104 | 42 | 0 | 5 | 108 | 4 | 107 | 8.26e-37 | 126 |
| MS.gene031929.t1 | MTR_1g070220 | 51.695 | 118 | 56 | 1 | 8 | 124 | 15 | 132 | 1.24e-36 | 125 |
| MS.gene031929.t1 | MTR_5g093010 | 42.143 | 140 | 74 | 2 | 9 | 141 | 6 | 145 | 2.59e-36 | 122 |
| MS.gene031929.t1 | MTR_7g074990 | 56.863 | 102 | 43 | 1 | 8 | 108 | 20 | 121 | 6.03e-36 | 124 |
| MS.gene031929.t1 | MTR_7g028905 | 52.941 | 102 | 48 | 0 | 7 | 108 | 4 | 105 | 1.79e-35 | 119 |
| MS.gene031929.t1 | MTR_7g096610 | 46.809 | 141 | 67 | 3 | 1 | 138 | 1 | 136 | 2.62e-35 | 122 |
| MS.gene031929.t1 | MTR_8g036105 | 56.075 | 107 | 46 | 1 | 7 | 112 | 17 | 123 | 6.63e-35 | 121 |
| MS.gene031929.t1 | MTR_7g075230 | 48.092 | 131 | 65 | 2 | 2 | 129 | 6 | 136 | 7.95e-35 | 120 |
| MS.gene031929.t1 | MTR_8g036085 | 54.369 | 103 | 46 | 1 | 7 | 108 | 22 | 124 | 3.47e-34 | 120 |
| MS.gene031929.t1 | MTR_6g027710 | 43.066 | 137 | 72 | 2 | 7 | 142 | 39 | 170 | 5.67e-34 | 119 |
| MS.gene031929.t1 | MTR_1g070205 | 45.517 | 145 | 69 | 6 | 8 | 147 | 12 | 151 | 1.29e-33 | 118 |
| MS.gene031929.t1 | MTR_5g080470 | 54.082 | 98 | 44 | 1 | 7 | 103 | 6 | 103 | 2.19e-33 | 117 |
| MS.gene031929.t1 | MTR_8g079660 | 47.525 | 101 | 53 | 0 | 8 | 108 | 8 | 108 | 1.62e-29 | 108 |
| MS.gene031929.t1 | MTR_8g079620 | 44.554 | 101 | 56 | 0 | 8 | 108 | 8 | 108 | 1.58e-28 | 105 |
| MS.gene031929.t1 | MTR_6g027700 | 46.535 | 101 | 53 | 1 | 8 | 107 | 7 | 107 | 2.28e-28 | 104 |
| MS.gene031929.t1 | MTR_8g079580 | 44.545 | 110 | 60 | 1 | 1 | 109 | 1 | 110 | 1.31e-27 | 103 |
| MS.gene031929.t1 | MTR_4g107450 | 42.742 | 124 | 64 | 2 | 1 | 117 | 3 | 126 | 4.72e-26 | 100 |
| MS.gene031929.t1 | MTR_6g011230 | 40.404 | 99 | 59 | 0 | 3 | 101 | 6 | 104 | 6.76e-26 | 97.8 |
| MS.gene031929.t1 | MTR_6g011250 | 38.686 | 137 | 77 | 3 | 9 | 144 | 10 | 140 | 2.50e-25 | 95.9 |
| MS.gene031929.t1 | MTR_2g100020 | 38.462 | 104 | 64 | 0 | 5 | 108 | 16 | 119 | 1.83e-22 | 90.5 |
| MS.gene031929.t1 | MTR_6g011200 | 43.750 | 80 | 44 | 1 | 9 | 87 | 10 | 89 | 5.96e-22 | 89.0 |
| MS.gene031929.t1 | MTR_8g017090 | 37.500 | 104 | 65 | 0 | 5 | 108 | 9 | 112 | 7.07e-22 | 89.7 |
| MS.gene031929.t1 | MTR_4g088035 | 38.202 | 89 | 55 | 0 | 7 | 95 | 5 | 93 | 3.90e-19 | 81.6 |
| MS.gene031929.t1 | MTR_4g099230 | 39.362 | 94 | 52 | 2 | 9 | 97 | 3 | 96 | 1.32e-18 | 77.8 |
| MS.gene031929.t1 | MTR_5g085390 | 42.500 | 80 | 45 | 1 | 9 | 87 | 10 | 89 | 2.35e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031929.t1 | AT2G30130 | 79.259 | 135 | 22 | 2 | 1 | 131 | 1 | 133 | 1.36e-72 | 216 |
| MS.gene031929.t1 | AT1G16530 | 67.544 | 114 | 36 | 1 | 3 | 115 | 9 | 122 | 3.53e-52 | 164 |
| MS.gene031929.t1 | AT1G07900 | 64.865 | 111 | 39 | 0 | 7 | 117 | 32 | 142 | 2.47e-50 | 160 |
| MS.gene031929.t1 | AT2G28500 | 65.138 | 109 | 38 | 0 | 7 | 115 | 54 | 162 | 9.21e-50 | 160 |
| MS.gene031929.t1 | AT1G31320 | 71.171 | 111 | 32 | 0 | 4 | 114 | 9 | 119 | 1.05e-49 | 157 |
| MS.gene031929.t1 | AT2G30340 | 64.151 | 106 | 38 | 0 | 4 | 109 | 48 | 153 | 2.71e-46 | 152 |
| MS.gene031929.t1 | AT2G30340 | 64.151 | 106 | 38 | 0 | 4 | 109 | 49 | 154 | 2.73e-46 | 152 |
| MS.gene031929.t1 | AT3G27650 | 62.385 | 109 | 41 | 0 | 1 | 109 | 32 | 140 | 5.13e-46 | 148 |
| MS.gene031929.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 7.64e-46 | 148 |
| MS.gene031929.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 7.64e-46 | 148 |
| MS.gene031929.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 7.64e-46 | 148 |
| MS.gene031929.t1 | AT5G63090 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 7.64e-46 | 148 |
| MS.gene031929.t1 | AT3G26660 | 62.264 | 106 | 40 | 0 | 9 | 114 | 6 | 111 | 6.35e-45 | 144 |
| MS.gene031929.t1 | AT3G26620 | 62.264 | 106 | 40 | 0 | 9 | 114 | 6 | 111 | 7.00e-45 | 144 |
| MS.gene031929.t1 | AT2G40470 | 59.690 | 129 | 50 | 1 | 4 | 130 | 16 | 144 | 7.51e-45 | 146 |
| MS.gene031929.t1 | AT2G40470 | 59.690 | 129 | 50 | 1 | 4 | 130 | 41 | 169 | 1.27e-44 | 146 |
| MS.gene031929.t1 | AT3G11090 | 55.147 | 136 | 57 | 2 | 5 | 136 | 8 | 143 | 8.78e-44 | 142 |
| MS.gene031929.t1 | AT2G23660 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 2.23e-42 | 143 |
| MS.gene031929.t1 | AT2G23660 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 2.23e-42 | 143 |
| MS.gene031929.t1 | AT2G23660 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 2.23e-42 | 143 |
| MS.gene031929.t1 | AT5G66870 | 50.769 | 130 | 64 | 0 | 3 | 132 | 2 | 131 | 5.29e-42 | 142 |
| MS.gene031929.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 7.34e-39 | 131 |
| MS.gene031929.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 7.34e-39 | 131 |
| MS.gene031929.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 7.34e-39 | 131 |
| MS.gene031929.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 7.34e-39 | 131 |
| MS.gene031929.t1 | AT1G65620 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 7.34e-39 | 131 |
| MS.gene031929.t1 | AT4G00210 | 54.310 | 116 | 49 | 2 | 1 | 112 | 1 | 116 | 2.46e-37 | 127 |
| MS.gene031929.t1 | AT3G03760 | 55.769 | 104 | 45 | 1 | 7 | 109 | 50 | 153 | 7.85e-37 | 128 |
| MS.gene031929.t1 | AT2G42430 | 57.547 | 106 | 44 | 1 | 4 | 108 | 11 | 116 | 1.08e-36 | 127 |
| MS.gene031929.t1 | AT2G42440 | 47.244 | 127 | 65 | 2 | 7 | 132 | 6 | 131 | 1.39e-34 | 121 |
| MS.gene031929.t1 | AT2G45410 | 57.282 | 103 | 43 | 1 | 11 | 112 | 19 | 121 | 1.72e-34 | 119 |
| MS.gene031929.t1 | AT3G58190 | 54.639 | 97 | 43 | 1 | 8 | 103 | 11 | 107 | 3.83e-33 | 117 |
| MS.gene031929.t1 | AT2G31310 | 50.926 | 108 | 51 | 2 | 1 | 107 | 1 | 107 | 1.54e-32 | 114 |
| MS.gene031929.t1 | AT2G45420 | 51.923 | 104 | 49 | 1 | 11 | 113 | 40 | 143 | 1.99e-32 | 116 |
| MS.gene031929.t1 | AT4G00220 | 52.885 | 104 | 48 | 1 | 11 | 113 | 20 | 123 | 4.50e-32 | 114 |
| MS.gene031929.t1 | AT3G50510 | 43.902 | 123 | 67 | 1 | 6 | 126 | 10 | 132 | 2.81e-30 | 109 |
| MS.gene031929.t1 | AT3G50510 | 43.902 | 123 | 67 | 1 | 6 | 126 | 10 | 132 | 2.81e-30 | 109 |
| MS.gene031929.t1 | AT5G06080 | 51.376 | 109 | 47 | 2 | 7 | 114 | 6 | 109 | 7.00e-30 | 107 |
| MS.gene031929.t1 | AT5G35900 | 36.364 | 143 | 76 | 2 | 9 | 150 | 6 | 134 | 3.48e-26 | 99.0 |
| MS.gene031929.t1 | AT1G72980 | 38.525 | 122 | 74 | 1 | 3 | 123 | 8 | 129 | 4.73e-25 | 96.3 |
| MS.gene031929.t1 | AT3G47870 | 37.037 | 108 | 68 | 0 | 1 | 108 | 29 | 136 | 3.34e-24 | 96.3 |
| MS.gene031929.t1 | AT3G13850 | 35.537 | 121 | 74 | 1 | 9 | 125 | 37 | 157 | 2.35e-23 | 92.8 |
| MS.gene031929.t1 | AT1G06280 | 49.351 | 77 | 39 | 0 | 9 | 85 | 25 | 101 | 9.01e-21 | 84.7 |
| MS.gene031929.t1 | AT4G22700 | 37.500 | 112 | 67 | 3 | 9 | 119 | 6 | 115 | 2.33e-17 | 75.5 |
| MS.gene031929.t1 | AT2G19820 | 38.542 | 96 | 58 | 1 | 7 | 101 | 11 | 106 | 8.44e-17 | 72.4 |
| MS.gene031929.t1 | AT5G15060 | 40.000 | 80 | 44 | 2 | 3 | 79 | 12 | 90 | 5.64e-14 | 65.5 |
| MS.gene031929.t1 | AT1G36000 | 29.885 | 87 | 61 | 0 | 8 | 94 | 9 | 95 | 1.91e-12 | 60.8 |
| MS.gene031929.t1 | AT3G27940 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 2.91e-11 | 58.5 |
| MS.gene031929.t1 | AT3G27940 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 2.91e-11 | 58.5 |
| MS.gene031929.t1 | AT3G27940 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 2.91e-11 | 58.5 |
Find 21 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGCACAACGGCGTCTA+AGG | 0.285930 | 3.4:-70837326 | None:intergenic |
| GCATCAGCTCTTTGTTGAAT+AGG | 0.314081 | 3.4:-70837976 | None:intergenic |
| GGATCATGTGAAGGGAAATA+AGG | 0.350330 | 3.4:-70837363 | None:intergenic |
| GTTGATCATCATGTTTCATC+TGG | 0.383715 | 3.4:-70838140 | None:intergenic |
| AGAGTGAAAGACCCTGTTTA+TGG | 0.387679 | 3.4:+70838030 | MS.gene031929:CDS |
| GCTCCAACACAACCATAAAC+AGG | 0.400328 | 3.4:-70838042 | None:intergenic |
| GCATTTGAAGCTCAGAAACT+TGG | 0.418459 | 3.4:-70838083 | None:intergenic |
| TGAATTACATTGCTTGAAGA+AGG | 0.450118 | 3.4:-70838234 | None:intergenic |
| TACTGAGGAAGCTGATCATA+AGG | 0.470175 | 3.4:-70838201 | None:intergenic |
| GATCATAAGGTTTATGATCA+AGG | 0.470200 | 3.4:-70838188 | None:intergenic |
| GACCCTGTTTATGGTTGTGT+TGG | 0.486001 | 3.4:+70838039 | MS.gene031929:CDS |
| CCTTAGACGCCGTTGTGCTA+AGG | 0.517412 | 3.4:+70837326 | MS.gene031929:CDS |
| ATCATAAGGTTTATGATCAA+GGG | 0.563088 | 3.4:-70838187 | None:intergenic |
| CAACGTTAGCAAAATGCTCC+AGG | 0.569502 | 3.4:+70837425 | MS.gene031929:CDS |
| GAAGGAAAATTGAAATACTG+AGG | 0.570319 | 3.4:-70838216 | None:intergenic |
| AAAATTTGCAATAGTTCACA+AGG | 0.586403 | 3.4:+70837389 | MS.gene031929:CDS |
| AGGAGTTTGCATGAAGCACA+AGG | 0.592427 | 3.4:-70837306 | None:intergenic |
| GAGTTTGCATGAAGCACAAG+GGG | 0.629954 | 3.4:-70837304 | None:intergenic |
| CTCCAACACAACCATAAACA+GGG | 0.645133 | 3.4:-70838041 | None:intergenic |
| GGAGTTTGCATGAAGCACAA+GGG | 0.671143 | 3.4:-70837305 | None:intergenic |
| AGATACAATCCTTAGCACAA+CGG | 0.718268 | 3.4:-70837335 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTTTTTTTTAAAGAA+AGG | + | chr3.4:70837914-70837933 | MS.gene031929:intron | 10.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3.4:70837803-70837822 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3.4:70837920-70837939 | MS.gene031929:intron | 15.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3.4:70837735-70837754 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3.4:70837741-70837760 | MS.gene031929:intron | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3.4:70837599-70837618 | None:intergenic | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+AGG | + | chr3.4:70837859-70837878 | MS.gene031929:intron | 20.0% |
| !!! | AAGAAAAAAGTACAATTAAG+CGG | - | chr3.4:70837548-70837567 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3.4:70837476-70837495 | None:intergenic | 20.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3.4:70837387-70837406 | None:intergenic | 20.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3.4:70837389-70837408 | MS.gene031929:CDS | 25.0% |
| ! | ATCATAAGGTTTATGATCAA+GGG | - | chr3.4:70838190-70838209 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3.4:70837772-70837791 | None:intergenic | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3.4:70838165-70838184 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3.4:70837375-70837394 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3.4:70837374-70837393 | None:intergenic | 25.0% |
| !!! | TATTAGGTTTTGAGTTTTGA+CGG | + | chr3.4:70837875-70837894 | MS.gene031929:intron | 25.0% |
| ATTTGTTTCAAAAAGTGGTG+TGG | - | chr3.4:70837767-70837786 | None:intergenic | 30.0% | |
| GAAGGAAAATTGAAATACTG+AGG | - | chr3.4:70838219-70838238 | None:intergenic | 30.0% | |
| GACTTATTGTACAATGCTAT+AGG | + | chr3.4:70837948-70837967 | MS.gene031929:intron | 30.0% | |
| GATCATAAGGTTTATGATCA+AGG | - | chr3.4:70838191-70838210 | None:intergenic | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3.4:70838237-70838256 | None:intergenic | 30.0% | |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3.4:70837504-70837523 | MS.gene031929:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3.4:70837882-70837901 | MS.gene031929:intron | 30.0% |
| AGATACAATCCTTAGCACAA+CGG | - | chr3.4:70837338-70837357 | None:intergenic | 35.0% | |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3.4:70837661-70837680 | None:intergenic | 35.0% | |
| GTTGATCATCATGTTTCATC+TGG | - | chr3.4:70838143-70838162 | None:intergenic | 35.0% | |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3.4:70837656-70837675 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3.4:70837656-70837675 | MS.gene031929:intron | 35.0% |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3.4:70837396-70837415 | MS.gene031929:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3.4:70837629-70837648 | MS.gene031929:intron | 35.0% |
| !!! | AGAAACTTGGTTTTGAAGGT+AGG | - | chr3.4:70838073-70838092 | None:intergenic | 35.0% |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3.4:70837821-70837840 | MS.gene031929:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3.4:70837881-70837900 | MS.gene031929:intron | 35.0% |
| !!! | TTGGTTTTGAAGGTAGGATA+TGG | - | chr3.4:70838067-70838086 | None:intergenic | 35.0% |
| AGAGTGAAAGACCCTGTTTA+TGG | + | chr3.4:70838030-70838049 | MS.gene031929:CDS | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3.4:70837662-70837681 | None:intergenic | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3.4:70838044-70838063 | None:intergenic | 40.0% | |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3.4:70837979-70837998 | None:intergenic | 40.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3.4:70837366-70837385 | None:intergenic | 40.0% | |
| TACTGAGGAAGCTGATCATA+AGG | - | chr3.4:70838204-70838223 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3.4:70837659-70837678 | MS.gene031929:intron | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3.4:70838086-70838105 | None:intergenic | 40.0% |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3.4:70838077-70838096 | None:intergenic | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3.4:70837891-70837910 | MS.gene031929:intron | 40.0% |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3.4:70837309-70837328 | None:intergenic | 45.0% | |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3.4:70837425-70837444 | MS.gene031929:CDS | 45.0% | |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3.4:70838039-70838058 | MS.gene031929:CDS | 45.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3.4:70837307-70837326 | None:intergenic | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3.4:70838045-70838064 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3.4:70837308-70837327 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3.4:70837424-70837443 | None:intergenic | 45.0% |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3.4:70837459-70837478 | None:intergenic | 45.0% |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3.4:70837446-70837465 | None:intergenic | 50.0% |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3.4:70837326-70837345 | MS.gene031929:CDS | 55.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3.4:70837329-70837348 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 70837285 | 70838290 | 70837285 | ID=MS.gene031929 |
| chr3.4 | mRNA | 70837285 | 70838290 | 70837285 | ID=MS.gene031929.t1;Parent=MS.gene031929 |
| chr3.4 | exon | 70837285 | 70837446 | 70837285 | ID=MS.gene031929.t1.exon1;Parent=MS.gene031929.t1 |
| chr3.4 | CDS | 70837285 | 70837446 | 70837285 | ID=cds.MS.gene031929.t1;Parent=MS.gene031929.t1 |
| chr3.4 | exon | 70837970 | 70838290 | 70837970 | ID=MS.gene031929.t1.exon2;Parent=MS.gene031929.t1 |
| chr3.4 | CDS | 70837970 | 70838290 | 70837970 | ID=cds.MS.gene031929.t1;Parent=MS.gene031929.t1 |
| Gene Sequence |
| Protein sequence |
