AlfalfaGEDB | MS.gene031943

M. sativa cultivar XinJiangDaYe / MS.gene031943

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031943.t1	XP_003600955.1	99.2	119	1	0	1	119	1	119	1.90E-60	241.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031943.t1	Q9SRL8	78.4	111	24	0	4	114	1	111	8.4e-46	184.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031943.t1	G7JBW6	99.2	119	1	0	1	119	1	119	1.3e-60	241.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene031943.t1	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031943.t1	MTR_3g071420	91.275	149	8	1	1	144	1	149	1.62e-80	235
MS.gene031943.t1	MTR_5g083010	76.596	141	33	0	4	144	1	141	1.05e-74	220
MS.gene031943.t1	MTR_7g033800	64.151	106	38	0	11	116	8	113	1.04e-46	149
MS.gene031943.t1	MTR_6g005070	65.094	106	37	0	11	116	6	111	2.54e-46	147
MS.gene031943.t1	MTR_5g083230	64.078	103	37	0	12	114	4	106	1.54e-44	144
MS.gene031943.t1	MTR_3g031660	52.000	125	59	1	12	136	5	128	7.36e-44	142
MS.gene031943.t1	MTR_4g105170	60.952	105	41	0	12	116	9	113	8.36e-44	142
MS.gene031943.t1	MTR_3g071590	61.905	105	40	0	10	114	4	108	8.37e-44	141
MS.gene031943.t1	MTR_6g005080	62.264	106	40	0	11	116	7	112	9.23e-44	141
MS.gene031943.t1	MTR_4g083680	52.846	123	58	0	11	133	12	134	1.35e-43	141

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031943.t1	AT3G11090	66.667	138	46	4	141	1	138	9.85e-63	190
MS.gene031943.t1	AT3G27650	64.151	106	38	11	116	36	141	2.37e-45	145
MS.gene031943.t1	AT5G66870	62.857	105	39	11	115	4	108	1.02e-43	146
MS.gene031943.t1	AT5G63090	58.407	113	47	12	124	9	121	2.89e-43	141
MS.gene031943.t1	AT5G63090	58.407	113	47	12	124	9	121	2.89e-43	141
MS.gene031943.t1	AT5G63090	58.407	113	47	12	124	9	121	2.89e-43	141
MS.gene031943.t1	AT5G63090	58.407	113	47	12	124	9	121	2.89e-43	141
MS.gene031943.t1	AT2G23660	60.577	104	41	11	114	2	105	2.04e-42	142
MS.gene031943.t1	AT2G23660	60.577	104	41	11	114	2	105	2.04e-42	142
MS.gene031943.t1	AT2G23660	60.577	104	41	11	114	2	105	2.04e-42	142

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Find 22 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATGCATCCATAAACT+GGG	0.613188	3.4:+70666109	None:intergenic
AAGTGAAATGAAAGGCATAA+AGG	0.382977	3.4:-70666367	None:intergenic
AATTACAGAAGGAGTTGTTG+TGG	0.604155	3.4:+70665978	None:intergenic
ACATGATTTGGCCATTGCTA+AGG	0.501000	3.4:-70666049	MS.gene031943:CDS
AGCAAGACGTTCCTTAGCAA+TGG	0.581078	3.4:+70666038	None:intergenic
AGGCTTAAAGACCCAGTTTA+TGG	0.242004	3.4:-70666120	MS.gene031943:CDS
AGTGAAATGAAAGGCATAAA+GGG	0.450119	3.4:-70666366	None:intergenic
ATTTCTTGCACTCGTTAGAA+TGG	0.427400	3.4:+70666256	None:intergenic
CACTCGTTAGAATGGAAGTA+AGG	0.514845	3.4:+70666264	None:intergenic
CTTCCTTTGCAACATAGCTA+TGG	0.497960	3.4:+70666086	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACATAATTTCCATGGTTC+CGG	-	chr3.4:70666249-70666268	MS.gene031943:CDS	30.0%
TGCAAACTATCAATTACAGA+AGG	+	chr3.4:70665982-70666001	None:intergenic	30.0%
TTATAAGAGATAAGAACTGC+TGG	-	chr3.4:70666278-70666297	MS.gene031943:CDS	30.0%
AACCAATGCATCCATAAACT+GGG	+	chr3.4:70665840-70665859	None:intergenic	35.0%
AATTACAGAAGGAGTTGTTG+TGG	+	chr3.4:70665971-70665990	None:intergenic	35.0%
ATCATTGAGATCGTTAGAAG+TGG	+	chr3.4:70666040-70666059	None:intergenic	35.0%
ATTTCTTGCACTCGTTAGAA+TGG	+	chr3.4:70665693-70665712	None:intergenic	35.0%
GATGGAACTTCAACATGATT+TGG	-	chr3.4:70665885-70665904	MS.gene031943:intron	35.0%
TAAGGTGCAAATAAGCAATC+TGG	+	chr3.4:70665667-70665686	None:intergenic	35.0%
TATAACAATTACCGGAACCA+TGG	+	chr3.4:70666263-70666282	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	70665586	70666382	70665586	ID=MS.gene031943
chr3.4	mRNA	70665586	70666382	70665586	ID=MS.gene031943.t1;Parent=MS.gene031943
chr3.4	exon	70665984	70666382	70665984	ID=MS.gene031943.t1.exon1;Parent=MS.gene031943.t1
chr3.4	CDS	70665984	70666382	70665984	ID=cds.MS.gene031943.t1;Parent=MS.gene031943.t1
chr3.4	exon	70665586	70665624	70665586	ID=MS.gene031943.t1.exon2;Parent=MS.gene031943.t1
chr3.4	CDS	70665586	70665624	70665586	ID=cds.MS.gene031943.t1;Parent=MS.gene031943.t1

Gene Sequence

>MS.gene031943

ATGAAAGGCATAAAGGGTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAATTATTGAAAAGAAGATGCACACCAGATTGCTTATTTGCACCTTACTTCCATTCTAACGAGTGCAAGAAATTTGCTAAAGTTCACAAAGTATTTGGAGCAAGCAATGTTAGCAAGATACTCATTGAAGTACCAGAAAAACAAAGAGAAGACACAGTGAATTCTCTTGCTTATGAAGCAGAAGCAAGGCTTAAAGACCCAGTTTATGGATGCATTGGTTCCATAGCTATGTTGCAAAGGAAGATGATGGAACTTCAACATGATTTGGCCATTGCTAAGGAACGTCTTGCTCGCTGTCGTGCTGTTGCTGCAGCTGCTACAATCACCACCACAACAACTCCTTCTGTAATTGATAGTTTGCATTCTGATGTTACTTTGCCTCCATTTCCTGAGTTTTCCACTTCTAACGATCTCAATGATATCTTTTGTCATGGCTCTTCTTCGCAATTTTTGGGTCGAAATGAAACAATGGATGATTTCAATCAAATTCCTTATACATTTTGATCATATGGTCCCCCCTTTTTTGTGAATTAAAATTGTCATGTATGTGCTAATAAATAAGAACTTCATGATTAGCAATGAAAAAAAAACATGTATTATTGTGTGTTAATACATAATTTCCATGGTTCCGGTAATTGTTATAAGAGATAAGAACTGCTGGAAAATATTGTTTTTTTGGTCATTATGTTTCAATTTTGTAACAGCGATATGATTTTTCACTGTTGGTGTTTCCTGAATCCTGA

Protein sequence

>MS.gene031943.t1

MKGIKGYEPRSSSSCAACKLLKRRCTPDCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLKDPVYGCIGSIAMLQRKMMELQHDLAIAKERLARCRAVAAAATITTTTTPSRYDFSLLVFPES