Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031959.t1 | XP_003600919.1 | 93.6 | 518 | 32 | 1 | 1 | 518 | 1 | 517 | 3.10E-283 | 983.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031959.t1 | Q9XEE6 | 48.7 | 567 | 219 | 18 | 10 | 516 | 33 | 587 | 1.5e-124 | 448.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031959.t1 | G7JBT0 | 93.6 | 518 | 32 | 1 | 1 | 518 | 1 | 517 | 2.2e-283 | 983.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031959.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031959.t1 | MTR_3g070880 | 93.629 | 518 | 32 | 1 | 1 | 518 | 1 | 517 | 0.0 | 1017 |
| MS.gene031959.t1 | MTR_5g082830 | 60.298 | 403 | 90 | 8 | 1 | 337 | 16 | 414 | 7.63e-159 | 468 |
| MS.gene031959.t1 | MTR_5g082830 | 51.452 | 241 | 89 | 9 | 299 | 516 | 439 | 674 | 6.71e-51 | 185 |
| MS.gene031959.t1 | MTR_1g075890 | 43.463 | 566 | 196 | 18 | 2 | 464 | 25 | 569 | 1.12e-124 | 379 |
| MS.gene031959.t1 | MTR_5g071070 | 45.000 | 440 | 155 | 8 | 8 | 370 | 33 | 462 | 4.66e-119 | 366 |
| MS.gene031959.t1 | MTR_5g071070 | 33.796 | 216 | 118 | 9 | 323 | 516 | 483 | 695 | 1.17e-15 | 80.5 |
| MS.gene031959.t1 | MTR_7g092070 | 35.606 | 660 | 227 | 18 | 10 | 493 | 47 | 684 | 1.73e-106 | 334 |
| MS.gene031959.t1 | MTR_5g071070 | 43.846 | 390 | 132 | 8 | 58 | 370 | 1 | 380 | 4.44e-98 | 309 |
| MS.gene031959.t1 | MTR_5g071070 | 33.796 | 216 | 118 | 9 | 323 | 516 | 401 | 613 | 1.59e-15 | 79.7 |
| MS.gene031959.t1 | MTR_3g464260 | 37.662 | 539 | 195 | 17 | 13 | 486 | 28 | 490 | 2.18e-88 | 281 |
| MS.gene031959.t1 | MTR_3g029590 | 31.791 | 670 | 251 | 21 | 8 | 493 | 43 | 690 | 7.79e-83 | 272 |
| MS.gene031959.t1 | MTR_3g435590 | 43.614 | 321 | 127 | 5 | 8 | 275 | 30 | 349 | 6.40e-82 | 263 |
| MS.gene031959.t1 | MTR_1g050438 | 41.667 | 336 | 127 | 6 | 10 | 281 | 15 | 345 | 9.37e-79 | 258 |
| MS.gene031959.t1 | MTR_0728s0020 | 41.667 | 336 | 127 | 6 | 10 | 281 | 31 | 361 | 3.76e-78 | 257 |
| MS.gene031959.t1 | MTR_3g464280 | 35.674 | 527 | 180 | 18 | 26 | 465 | 33 | 487 | 8.82e-73 | 239 |
| MS.gene031959.t1 | MTR_3g435680 | 47.867 | 211 | 82 | 3 | 104 | 290 | 67 | 273 | 2.59e-61 | 206 |
| MS.gene031959.t1 | MTR_3g464270 | 37.166 | 374 | 158 | 16 | 163 | 484 | 8 | 356 | 1.49e-50 | 177 |
| MS.gene031959.t1 | MTR_3g103960 | 53.247 | 154 | 58 | 3 | 154 | 306 | 43 | 183 | 6.57e-48 | 167 |
| MS.gene031959.t1 | MTR_6g090380 | 62.963 | 108 | 40 | 0 | 159 | 266 | 98 | 205 | 3.03e-47 | 169 |
| MS.gene031959.t1 | MTR_8g102100 | 57.377 | 122 | 52 | 0 | 160 | 281 | 77 | 198 | 4.81e-47 | 168 |
| MS.gene031959.t1 | MTR_3g464290 | 34.783 | 414 | 194 | 16 | 123 | 486 | 64 | 451 | 4.71e-46 | 167 |
| MS.gene031959.t1 | MTR_2g090605 | 58.559 | 111 | 46 | 0 | 164 | 274 | 77 | 187 | 1.17e-42 | 157 |
| MS.gene031959.t1 | MTR_4g078660 | 58.879 | 107 | 44 | 0 | 160 | 266 | 56 | 162 | 2.09e-42 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031959.t1 | AT3G55980 | 48.258 | 574 | 209 | 20 | 9 | 517 | 29 | 579 | 8.15e-155 | 454 |
| MS.gene031959.t1 | AT3G55980 | 48.258 | 574 | 209 | 20 | 9 | 517 | 96 | 646 | 1.54e-153 | 453 |
| MS.gene031959.t1 | AT2G40140 | 47.826 | 575 | 228 | 17 | 2 | 516 | 25 | 587 | 2.73e-153 | 451 |
| MS.gene031959.t1 | AT2G40140 | 47.826 | 575 | 228 | 17 | 2 | 516 | 25 | 587 | 2.73e-153 | 451 |
| MS.gene031959.t1 | AT5G58620 | 44.521 | 584 | 208 | 19 | 8 | 486 | 12 | 584 | 2.93e-142 | 423 |
| MS.gene031959.t1 | AT2G41900 | 43.478 | 437 | 150 | 12 | 10 | 353 | 48 | 480 | 7.69e-103 | 324 |
| MS.gene031959.t1 | AT5G12850 | 35.032 | 628 | 254 | 21 | 8 | 489 | 40 | 659 | 1.08e-101 | 321 |
| MS.gene031959.t1 | AT4G29190 | 49.718 | 177 | 77 | 3 | 137 | 301 | 52 | 228 | 1.67e-49 | 174 |
| MS.gene031959.t1 | AT2G19810 | 56.818 | 132 | 57 | 0 | 137 | 268 | 51 | 182 | 2.75e-49 | 174 |
| MS.gene031959.t1 | AT2G25900 | 62.500 | 112 | 42 | 0 | 160 | 271 | 86 | 197 | 7.47e-49 | 171 |
| MS.gene031959.t1 | AT2G25900 | 62.500 | 112 | 42 | 0 | 160 | 271 | 86 | 197 | 7.47e-49 | 171 |
| MS.gene031959.t1 | AT5G07500 | 56.098 | 123 | 54 | 0 | 144 | 266 | 32 | 154 | 6.66e-48 | 166 |
| MS.gene031959.t1 | AT1G03790 | 49.333 | 150 | 66 | 3 | 133 | 278 | 57 | 200 | 3.03e-41 | 153 |
| MS.gene031959.t1 | AT5G44260 | 51.880 | 133 | 57 | 2 | 140 | 271 | 42 | 168 | 9.15e-40 | 148 |
Find 112 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTAACAATCTCAAATT+TGG | 0.138458 | 3.4:-70360816 | None:intergenic |
| CTTGAACATGGTTCCTGTTT+TGG | 0.154085 | 3.4:-70361585 | None:intergenic |
| GACACGAAGCCAAAGCTTTA+TGG | 0.159998 | 3.4:+70361726 | MS.gene031959:CDS |
| TCTGAGAATTCTGAGATATT+TGG | 0.200828 | 3.4:+70361973 | MS.gene031959:CDS |
| CTTCTTTGTTTGGAAGCATT+AGG | 0.245406 | 3.4:+70360687 | MS.gene031959:CDS |
| AATAATCAAGCAGAAAATTT+TGG | 0.246655 | 3.4:+70360877 | MS.gene031959:CDS |
| CTTATGGTTGCTTCTTTGTT+TGG | 0.265933 | 3.4:+70360677 | MS.gene031959:CDS |
| CAGATTGGGTTTCAAATGAT+TGG | 0.282097 | 3.4:+70361815 | MS.gene031959:CDS |
| CAGCTATAAGGATACTTCTT+TGG | 0.295350 | 3.4:-70361106 | None:intergenic |
| CACATGTAATTTCCATTCTT+AGG | 0.300468 | 3.4:-70361409 | None:intergenic |
| ATTCAAGTAAAACTGAGTTT+TGG | 0.311642 | 3.4:-70360523 | None:intergenic |
| TTCTTTGTTTGGAAGCATTA+GGG | 0.311661 | 3.4:+70360688 | MS.gene031959:CDS |
| AAAACACCATTGTTTATATC+AGG | 0.317396 | 3.4:-70360965 | None:intergenic |
| CTCATAGATTGGAATTGATT+AGG | 0.322495 | 3.4:-70361547 | None:intergenic |
| TGAAAAGAGAACACCCCTTA+TGG | 0.338972 | 3.4:+70360661 | MS.gene031959:CDS |
| GGTGTAGAAACATTTGAAAT+TGG | 0.342203 | 3.4:-70361355 | None:intergenic |
| ACTCACATGCATCTTTCTTC+TGG | 0.348032 | 3.4:-70361162 | None:intergenic |
| GCTTCTAATTCCTTTAAATC+AGG | 0.352563 | 3.4:-70360902 | None:intergenic |
| ATGTAAATGAGGCAGGTTAT+TGG | 0.356150 | 3.4:+70360603 | MS.gene031959:CDS |
| GCATTACATTGTGCTGTTGC+TGG | 0.358959 | 3.4:+70360782 | MS.gene031959:CDS |
| TCGATTCGGAAGCACCGATA+TGG | 0.364885 | 3.4:-70361768 | None:intergenic |
| GAAGCTGAGAAGAAAGATTC+AGG | 0.379366 | 3.4:+70360920 | MS.gene031959:CDS |
| AGGCCTTTGTATGCTTCTAC+TGG | 0.382036 | 3.4:+70361304 | MS.gene031959:CDS |
| GAACTCTGGTCTGTCAGATT+GGG | 0.382476 | 3.4:+70361801 | MS.gene031959:CDS |
| ATGAGAAAATCATCAGCATA+TGG | 0.391943 | 3.4:+70361643 | MS.gene031959:CDS |
| GCATGTCCCTTTGCGAAACT+CGG | 0.397119 | 3.4:-70361140 | None:intergenic |
| GCATTGAAATACCATGTAAC+AGG | 0.408752 | 3.4:-70361513 | None:intergenic |
| GTTAAGCTCTTGCTTGATGC+TGG | 0.411467 | 3.4:+70360830 | MS.gene031959:CDS |
| CAAAAGGGAAGTAGAAGAAA+AGG | 0.421816 | 3.4:+70360574 | MS.gene031959:CDS |
| TGAACTCTGGTCTGTCAGAT+TGG | 0.432028 | 3.4:+70361800 | MS.gene031959:CDS |
| GCATGTTGAGGCCGTGCAAC+GGG | 0.432944 | 3.4:-70361904 | None:intergenic |
| TGGAATTGATTAGGAGTTGA+AGG | 0.434731 | 3.4:-70361538 | None:intergenic |
| ATGATATTGAAGCATTCAAA+AGG | 0.436887 | 3.4:+70360558 | MS.gene031959:CDS |
| CAAACAAAGAAGCAACCATA+AGG | 0.445004 | 3.4:-70360676 | None:intergenic |
| GCTGAAACCTACTCATAGAT+TGG | 0.445115 | 3.4:-70361558 | None:intergenic |
| GGGCACGGAACACAGCTATA+AGG | 0.448836 | 3.4:-70361118 | None:intergenic |
| CACCGCGATCCATAAAGCTT+TGG | 0.452463 | 3.4:-70361735 | None:intergenic |
| TTCTCCCCTGGATGAACAAA+TGG | 0.453606 | 3.4:-70361067 | None:intergenic |
| GCTACAATTTGCTCTGTCCA+TGG | 0.454559 | 3.4:-70362039 | None:intergenic |
| CTGCAGCAGTGATGAATTCA+AGG | 0.455073 | 3.4:+70361689 | MS.gene031959:CDS |
| CATGTCCCTTTGCGAAACTC+GGG | 0.458325 | 3.4:-70361139 | None:intergenic |
| AATCTCATCTTTACAAAGCC+TGG | 0.458636 | 3.4:-70361233 | None:intergenic |
| GGTTTCAGCAGAACCAAAAC+AGG | 0.464964 | 3.4:+70361572 | MS.gene031959:CDS |
| GGCTTTGTAAAGATGAGATT+AGG | 0.465521 | 3.4:+70361236 | MS.gene031959:CDS |
| AAAAGGGAAGTAGAAGAAAA+GGG | 0.470783 | 3.4:+70360575 | MS.gene031959:CDS |
| GTTTGATTCATCAGCTGCTA+TGG | 0.471231 | 3.4:+70361666 | MS.gene031959:CDS |
| AAACAAAGAAGCAACCATAA+GGG | 0.473747 | 3.4:-70360675 | None:intergenic |
| GCTGATTCATCTCCTAAGAA+TGG | 0.478855 | 3.4:+70361397 | MS.gene031959:CDS |
| AGATTGGGTTTCAAATGATT+GGG | 0.479244 | 3.4:+70361816 | MS.gene031959:CDS |
| GTTCATCCTACTGTTCGATT+CGG | 0.479491 | 3.4:-70361782 | None:intergenic |
| TTCATCCAGGGGAGAATGCT+AGG | 0.479775 | 3.4:+70361074 | MS.gene031959:CDS |
| GGTTATGATGTAAATGAGGC+AGG | 0.483515 | 3.4:+70360596 | MS.gene031959:CDS |
| CTACAATTTGCTCTGTCCAT+GGG | 0.485011 | 3.4:-70362038 | None:intergenic |
| CAAGGGGTTACACTCATGAT+TGG | 0.486439 | 3.4:+70361035 | MS.gene031959:CDS |
| GATGAAACAATGCTGTTGAA+TGG | 0.488330 | 3.4:-70361616 | None:intergenic |
| GAGTGTCCATTTGTTCATCC+AGG | 0.489580 | 3.4:+70361061 | MS.gene031959:CDS |
| CTGCTTGATTATTTCATCAA+GGG | 0.490204 | 3.4:-70360867 | None:intergenic |
| TCTGCTTGATTATTTCATCA+AGG | 0.491359 | 3.4:-70360868 | None:intergenic |
| GGCATGTTGAGGCCGTGCAA+CGG | 0.492495 | 3.4:-70361905 | None:intergenic |
| AAGGGATTTGTATCAAGAAA+TGG | 0.494896 | 3.4:+70361489 | MS.gene031959:CDS |
| GAATGAACCCACGAGACATC+TGG | 0.502120 | 3.4:-70361931 | None:intergenic |
| AACCCACGAGACATCTGGTT+CGG | 0.516681 | 3.4:-70361926 | None:intergenic |
| CAAGAAATGGACCTGTTACA+TGG | 0.528005 | 3.4:+70361502 | MS.gene031959:CDS |
| TGATATTGAAGCATTCAAAA+GGG | 0.532093 | 3.4:+70360559 | MS.gene031959:CDS |
| CTTCTCCTAGCATTCTCCCC+TGG | 0.532406 | 3.4:-70361079 | None:intergenic |
| CTGCTGCTTCGCCCGTTGCA+CGG | 0.534070 | 3.4:+70361893 | MS.gene031959:CDS |
| TACACCACCTATGTCTCCAT+TGG | 0.535040 | 3.4:+70361372 | MS.gene031959:CDS |
| GTTAATGTGAACATGGCAAT+TGG | 0.535532 | 3.4:+70360743 | MS.gene031959:CDS |
| TGAGAAAATCATCAGCATAT+GGG | 0.536370 | 3.4:+70361644 | MS.gene031959:CDS |
| GGTTCATTCGCTTGTTCAAG+AGG | 0.536739 | 3.4:+70361945 | MS.gene031959:CDS |
| CCGTGCCCCGAGTTTCGCAA+AGG | 0.542263 | 3.4:+70361133 | MS.gene031959:CDS |
| CGTGCCCCGAGTTTCGCAAA+GGG | 0.545575 | 3.4:+70361134 | MS.gene031959:CDS |
| ATTGGCAAAGATTCTTGTGA+AGG | 0.549932 | 3.4:-70361337 | None:intergenic |
| CAAAGTGAAGACTTGCTCAA+GGG | 0.550348 | 3.4:+70361018 | MS.gene031959:CDS |
| AAAGGGTTATGATGTAAATG+AGG | 0.551386 | 3.4:+70360592 | MS.gene031959:CDS |
| TTGGGATGAGCTGCATAAGT+TGG | 0.555027 | 3.4:+70361834 | MS.gene031959:CDS |
| TCAGCTACCAATGGAGACAT+AGG | 0.556570 | 3.4:-70361379 | None:intergenic |
| AGTGTCCATTTGTTCATCCA+GGG | 0.559914 | 3.4:+70361062 | MS.gene031959:CDS |
| TCAAAGTGAAGACTTGCTCA+AGG | 0.569283 | 3.4:+70361017 | MS.gene031959:CDS |
| ATCAATTCCAATCTATGAGT+AGG | 0.579232 | 3.4:+70361551 | MS.gene031959:CDS |
| AGCCTGGTTCTGTATTGTGC+AGG | 0.587665 | 3.4:-70361217 | None:intergenic |
| CCTTTGCGAAACTCGGGGCA+CGG | 0.588011 | 3.4:-70361133 | None:intergenic |
| ATGCCGAACCAGATGTCTCG+TGG | 0.590815 | 3.4:+70361923 | MS.gene031959:CDS |
| TTACATTGTGCTGTTGCTGG+TGG | 0.591769 | 3.4:+70360785 | MS.gene031959:CDS |
| ATCCTGCACAATACAGAACC+AGG | 0.592720 | 3.4:+70361215 | MS.gene031959:CDS |
| GGAGATGAATCAGCTACCAA+TGG | 0.593824 | 3.4:-70361388 | None:intergenic |
| AACAAAGAAGCAACCATAAG+GGG | 0.599426 | 3.4:-70360674 | None:intergenic |
| AAAGTGAAGACTTGCTCAAG+GGG | 0.602277 | 3.4:+70361019 | MS.gene031959:CDS |
| CTGAGATATTTGGTGCTGAG+AGG | 0.605138 | 3.4:+70361983 | MS.gene031959:CDS |
| ACATCTGGTTCGGCATGTTG+AGG | 0.605882 | 3.4:-70361916 | None:intergenic |
| CATCATCATTCAAACAAACA+TGG | 0.606083 | 3.4:+70360721 | MS.gene031959:CDS |
| AAACATGGTTAATGTGAACA+TGG | 0.608674 | 3.4:+70360736 | MS.gene031959:CDS |
| ATGGATAACTTGCTTGAACA+TGG | 0.610654 | 3.4:-70361597 | None:intergenic |
| GTGCTTCCGAATCGAACAGT+AGG | 0.611938 | 3.4:+70361776 | MS.gene031959:CDS |
| CTAAGAATGGAAATTACATG+TGG | 0.612183 | 3.4:+70361410 | MS.gene031959:CDS |
| TTTGTTTGGAAGCATTAGGG+TGG | 0.614081 | 3.4:+70360691 | MS.gene031959:CDS |
| CACACAAACATGAAGAGTTG+AGG | 0.614467 | 3.4:+70361284 | MS.gene031959:CDS |
| TACAATTTGCTCTGTCCATG+GGG | 0.617465 | 3.4:-70362037 | None:intergenic |
| ATGTCCCTTTGCGAAACTCG+GGG | 0.621584 | 3.4:-70361138 | None:intergenic |
| TGGATGAACAAATGGACACT+CGG | 0.631229 | 3.4:-70361059 | None:intergenic |
| GTGTCCATTTGTTCATCCAG+GGG | 0.633464 | 3.4:+70361063 | MS.gene031959:CDS |
| TCATTGCCTGATATAAACAA+TGG | 0.636775 | 3.4:+70360959 | MS.gene031959:CDS |
| TCGAACAGTAGGATGAACTC+TGG | 0.639055 | 3.4:+70361787 | MS.gene031959:CDS |
| TGCCGAACCAGATGTCTCGT+GGG | 0.643543 | 3.4:+70361924 | MS.gene031959:CDS |
| GGTGTGTCAAGACACCATAT+CGG | 0.652931 | 3.4:+70361754 | MS.gene031959:CDS |
| AGCCAAAGCTTTATGGATCG+CGG | 0.654674 | 3.4:+70361733 | MS.gene031959:CDS |
| GCTTTGGCTTCGTGTCACAA+AGG | 0.657576 | 3.4:-70361719 | None:intergenic |
| ATAAACAGAAGTTATCCCCA+TGG | 0.657774 | 3.4:+70362022 | MS.gene031959:CDS |
| GCTACCAATGGAGACATAGG+TGG | 0.695473 | 3.4:-70361376 | None:intergenic |
| GAACCAGTAGAAGCATACAA+AGG | 0.717416 | 3.4:-70361307 | None:intergenic |
| AAATATCTCAGAATTCTCAG+AGG | 0.724613 | 3.4:-70361971 | None:intergenic |
| GATGCATGTGAGTATTCACA+TGG | 0.742964 | 3.4:+70361172 | MS.gene031959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGATTTAGAAATAATA+TGG | + | chr3.4:70361870-70361889 | MS.gene031959:CDS | 15.0% |
| !! | TATTGGTATTGTAGAAAAAT+AGG | + | chr3.4:70360620-70360639 | MS.gene031959:CDS | 20.0% |
| !!! | AATAATCAAGCAGAAAATTT+TGG | + | chr3.4:70360877-70360896 | MS.gene031959:CDS | 20.0% |
| ! | AAAACACCATTGTTTATATC+AGG | - | chr3.4:70360968-70360987 | None:intergenic | 25.0% |
| !! | ATGATATTGAAGCATTCAAA+AGG | + | chr3.4:70360558-70360577 | MS.gene031959:CDS | 25.0% |
| !! | ATTCAAGTAAAACTGAGTTT+TGG | - | chr3.4:70360526-70360545 | None:intergenic | 25.0% |
| !! | TGATATTGAAGCATTCAAAA+GGG | + | chr3.4:70360559-70360578 | MS.gene031959:CDS | 25.0% |
| AAAAGGGAAGTAGAAGAAAA+GGG | + | chr3.4:70360575-70360594 | MS.gene031959:CDS | 30.0% | |
| AAACAAAGAAGCAACCATAA+GGG | - | chr3.4:70360678-70360697 | None:intergenic | 30.0% | |
| AAACATGGTTAATGTGAACA+TGG | + | chr3.4:70360736-70360755 | MS.gene031959:CDS | 30.0% | |
| AAAGGGTTATGATGTAAATG+AGG | + | chr3.4:70360592-70360611 | MS.gene031959:CDS | 30.0% | |
| AAATATCTCAGAATTCTCAG+AGG | - | chr3.4:70361974-70361993 | None:intergenic | 30.0% | |
| AAGGGATTTGTATCAAGAAA+TGG | + | chr3.4:70361489-70361508 | MS.gene031959:CDS | 30.0% | |
| AGATTGGGTTTCAAATGATT+GGG | + | chr3.4:70361816-70361835 | MS.gene031959:CDS | 30.0% | |
| ATCAATTCCAATCTATGAGT+AGG | + | chr3.4:70361551-70361570 | MS.gene031959:CDS | 30.0% | |
| ATGAGAAAATCATCAGCATA+TGG | + | chr3.4:70361643-70361662 | MS.gene031959:CDS | 30.0% | |
| CACATGTAATTTCCATTCTT+AGG | - | chr3.4:70361412-70361431 | None:intergenic | 30.0% | |
| CATCATCATTCAAACAAACA+TGG | + | chr3.4:70360721-70360740 | MS.gene031959:CDS | 30.0% | |
| CTAAGAATGGAAATTACATG+TGG | + | chr3.4:70361410-70361429 | MS.gene031959:CDS | 30.0% | |
| CTCATAGATTGGAATTGATT+AGG | - | chr3.4:70361550-70361569 | None:intergenic | 30.0% | |
| CTGCTTGATTATTTCATCAA+GGG | - | chr3.4:70360870-70360889 | None:intergenic | 30.0% | |
| GAAAAATTCTTTGAGTGCAA+GGG | + | chr3.4:70361471-70361490 | MS.gene031959:CDS | 30.0% | |
| GAGCTTAACAATCTCAAATT+TGG | - | chr3.4:70360819-70360838 | None:intergenic | 30.0% | |
| GCTTCTAATTCCTTTAAATC+AGG | - | chr3.4:70360905-70360924 | None:intergenic | 30.0% | |
| TCATTGCCTGATATAAACAA+TGG | + | chr3.4:70360959-70360978 | MS.gene031959:CDS | 30.0% | |
| TCTGCTTGATTATTTCATCA+AGG | - | chr3.4:70360871-70360890 | None:intergenic | 30.0% | |
| TGAAAAATTCTTTGAGTGCA+AGG | + | chr3.4:70361470-70361489 | MS.gene031959:CDS | 30.0% | |
| TGAGAAAATCATCAGCATAT+GGG | + | chr3.4:70361644-70361663 | MS.gene031959:CDS | 30.0% | |
| ! | GGTGTAGAAACATTTGAAAT+TGG | - | chr3.4:70361358-70361377 | None:intergenic | 30.0% |
| ! | TATGCTGATGATTTTCTCAT+AGG | - | chr3.4:70361643-70361662 | None:intergenic | 30.0% |
| ! | TTGGAAAAATCTGCTTCTTT+TGG | + | chr3.4:70361853-70361872 | MS.gene031959:CDS | 30.0% |
| !! | TCTGAGAATTCTGAGATATT+TGG | + | chr3.4:70361973-70361992 | MS.gene031959:CDS | 30.0% |
| !! | TTCTTTGTTTGGAAGCATTA+GGG | + | chr3.4:70360688-70360707 | MS.gene031959:CDS | 30.0% |
| !!! | AATTTTGGTGCCTGATTTAA+AGG | + | chr3.4:70360892-70360911 | MS.gene031959:CDS | 30.0% |
| AACAAAGAAGCAACCATAAG+GGG | - | chr3.4:70360677-70360696 | None:intergenic | 35.0% | |
| AATCTCATCTTTACAAAGCC+TGG | - | chr3.4:70361236-70361255 | None:intergenic | 35.0% | |
| ATAAACAGAAGTTATCCCCA+TGG | + | chr3.4:70362022-70362041 | MS.gene031959:CDS | 35.0% | |
| ATGTAAATGAGGCAGGTTAT+TGG | + | chr3.4:70360603-70360622 | MS.gene031959:CDS | 35.0% | |
| ATTGGCAAAGATTCTTGTGA+AGG | - | chr3.4:70361340-70361359 | None:intergenic | 35.0% | |
| CAAAAGGGAAGTAGAAGAAA+AGG | + | chr3.4:70360574-70360593 | MS.gene031959:CDS | 35.0% | |
| CAAACAAAGAAGCAACCATA+AGG | - | chr3.4:70360679-70360698 | None:intergenic | 35.0% | |
| CAGATTGGGTTTCAAATGAT+TGG | + | chr3.4:70361815-70361834 | MS.gene031959:CDS | 35.0% | |
| CAGCTATAAGGATACTTCTT+TGG | - | chr3.4:70361109-70361128 | None:intergenic | 35.0% | |
| CTTATGGTTGCTTCTTTGTT+TGG | + | chr3.4:70360677-70360696 | MS.gene031959:CDS | 35.0% | |
| GATGAAACAATGCTGTTGAA+TGG | - | chr3.4:70361619-70361638 | None:intergenic | 35.0% | |
| GCATTGAAATACCATGTAAC+AGG | - | chr3.4:70361516-70361535 | None:intergenic | 35.0% | |
| GTTAATGTGAACATGGCAAT+TGG | + | chr3.4:70360743-70360762 | MS.gene031959:CDS | 35.0% | |
| TGGAATTGATTAGGAGTTGA+AGG | - | chr3.4:70361541-70361560 | None:intergenic | 35.0% | |
| ! | GGCTTTGTAAAGATGAGATT+AGG | + | chr3.4:70361236-70361255 | MS.gene031959:CDS | 35.0% |
| !! | ATGGATAACTTGCTTGAACA+TGG | - | chr3.4:70361600-70361619 | None:intergenic | 35.0% |
| !! | CTTCTTTGTTTGGAAGCATT+AGG | + | chr3.4:70360687-70360706 | MS.gene031959:CDS | 35.0% |
| !! | GAATTTTTCAGCTGCAATGA+AGG | - | chr3.4:70361460-70361479 | None:intergenic | 35.0% |
| ACTCACATGCATCTTTCTTC+TGG | - | chr3.4:70361165-70361184 | None:intergenic | 40.0% | |
| AGTGTCCATTTGTTCATCCA+GGG | + | chr3.4:70361062-70361081 | MS.gene031959:CDS | 40.0% | |
| CAAGAAATGGACCTGTTACA+TGG | + | chr3.4:70361502-70361521 | MS.gene031959:CDS | 40.0% | |
| CACACAAACATGAAGAGTTG+AGG | + | chr3.4:70361284-70361303 | MS.gene031959:CDS | 40.0% | |
| GAAGCTGAGAAGAAAGATTC+AGG | + | chr3.4:70360920-70360939 | MS.gene031959:CDS | 40.0% | |
| GATGCATGTGAGTATTCACA+TGG | + | chr3.4:70361172-70361191 | MS.gene031959:CDS | 40.0% | |
| GCTGAAACCTACTCATAGAT+TGG | - | chr3.4:70361561-70361580 | None:intergenic | 40.0% | |
| GGTTATGATGTAAATGAGGC+AGG | + | chr3.4:70360596-70360615 | MS.gene031959:CDS | 40.0% | |
| GTTCATCCTACTGTTCGATT+CGG | - | chr3.4:70361785-70361804 | None:intergenic | 40.0% | |
| GTTTGATTCATCAGCTGCTA+TGG | + | chr3.4:70361666-70361685 | MS.gene031959:CDS | 40.0% | |
| TGAAAAGAGAACACCCCTTA+TGG | + | chr3.4:70360661-70360680 | MS.gene031959:CDS | 40.0% | |
| TGGATGAACAAATGGACACT+CGG | - | chr3.4:70361062-70361081 | None:intergenic | 40.0% | |
| ! | AAAGTGAAGACTTGCTCAAG+GGG | + | chr3.4:70361019-70361038 | MS.gene031959:CDS | 40.0% |
| ! | CAAAGTGAAGACTTGCTCAA+GGG | + | chr3.4:70361018-70361037 | MS.gene031959:CDS | 40.0% |
| ! | CTACAATTTGCTCTGTCCAT+GGG | - | chr3.4:70362041-70362060 | None:intergenic | 40.0% |
| ! | CTTGAACATGGTTCCTGTTT+TGG | - | chr3.4:70361588-70361607 | None:intergenic | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+AGG | - | chr3.4:70361310-70361329 | None:intergenic | 40.0% |
| ! | GCTGATTCATCTCCTAAGAA+TGG | + | chr3.4:70361397-70361416 | MS.gene031959:CDS | 40.0% |
| ! | TACAATTTGCTCTGTCCATG+GGG | - | chr3.4:70362040-70362059 | None:intergenic | 40.0% |
| ! | TCAAAGTGAAGACTTGCTCA+AGG | + | chr3.4:70361017-70361036 | MS.gene031959:CDS | 40.0% |
| !! | TTTGTTTGGAAGCATTAGGG+TGG | + | chr3.4:70360691-70360710 | MS.gene031959:CDS | 40.0% |
| !! | TTTTTCAGCTGCAATGAAGG+TGG | - | chr3.4:70361457-70361476 | None:intergenic | 40.0% |
| AGGCCTTTGTATGCTTCTAC+TGG | + | chr3.4:70361304-70361323 | MS.gene031959:CDS | 45.0% | |
| ATCCTGCACAATACAGAACC+AGG | + | chr3.4:70361215-70361234 | MS.gene031959:CDS | 45.0% | |
| CAAGGGGTTACACTCATGAT+TGG | + | chr3.4:70361035-70361054 | MS.gene031959:CDS | 45.0% | |
| CTGCAGCAGTGATGAATTCA+AGG | + | chr3.4:70361689-70361708 | MS.gene031959:CDS | 45.0% | |
| GAACTCTGGTCTGTCAGATT+GGG | + | chr3.4:70361801-70361820 | MS.gene031959:CDS | 45.0% | |
| GACACGAAGCCAAAGCTTTA+TGG | + | chr3.4:70361726-70361745 | MS.gene031959:CDS | 45.0% | |
| GAGTGTCCATTTGTTCATCC+AGG | + | chr3.4:70361061-70361080 | MS.gene031959:CDS | 45.0% | |
| GGAGATGAATCAGCTACCAA+TGG | - | chr3.4:70361391-70361410 | None:intergenic | 45.0% | |
| GGTGTGTCAAGACACCATAT+CGG | + | chr3.4:70361754-70361773 | MS.gene031959:CDS | 45.0% | |
| GGTTCATTCGCTTGTTCAAG+AGG | + | chr3.4:70361945-70361964 | MS.gene031959:CDS | 45.0% | |
| GGTTTCAGCAGAACCAAAAC+AGG | + | chr3.4:70361572-70361591 | MS.gene031959:CDS | 45.0% | |
| GTGTCCATTTGTTCATCCAG+GGG | + | chr3.4:70361063-70361082 | MS.gene031959:CDS | 45.0% | |
| GTTAAGCTCTTGCTTGATGC+TGG | + | chr3.4:70360830-70360849 | MS.gene031959:CDS | 45.0% | |
| TACACCACCTATGTCTCCAT+TGG | + | chr3.4:70361372-70361391 | MS.gene031959:CDS | 45.0% | |
| TCAGCTACCAATGGAGACAT+AGG | - | chr3.4:70361382-70361401 | None:intergenic | 45.0% | |
| TCGAACAGTAGGATGAACTC+TGG | + | chr3.4:70361787-70361806 | MS.gene031959:CDS | 45.0% | |
| TGAACTCTGGTCTGTCAGAT+TGG | + | chr3.4:70361800-70361819 | MS.gene031959:CDS | 45.0% | |
| TTCTCCCCTGGATGAACAAA+TGG | - | chr3.4:70361070-70361089 | None:intergenic | 45.0% | |
| TTGGGATGAGCTGCATAAGT+TGG | + | chr3.4:70361834-70361853 | MS.gene031959:CDS | 45.0% | |
| ! | AGCCAAAGCTTTATGGATCG+CGG | + | chr3.4:70361733-70361752 | MS.gene031959:CDS | 45.0% |
| ! | GCATTACATTGTGCTGTTGC+TGG | + | chr3.4:70360782-70360801 | MS.gene031959:CDS | 45.0% |
| ! | GCTACAATTTGCTCTGTCCA+TGG | - | chr3.4:70362042-70362061 | None:intergenic | 45.0% |
| ! | TTACATTGTGCTGTTGCTGG+TGG | + | chr3.4:70360785-70360804 | MS.gene031959:CDS | 45.0% |
| !! | CTGAGATATTTGGTGCTGAG+AGG | + | chr3.4:70361983-70362002 | MS.gene031959:CDS | 45.0% |
| AACCCACGAGACATCTGGTT+CGG | - | chr3.4:70361929-70361948 | None:intergenic | 50.0% | |
| ATGTCCCTTTGCGAAACTCG+GGG | - | chr3.4:70361141-70361160 | None:intergenic | 50.0% | |
| CACCGCGATCCATAAAGCTT+TGG | - | chr3.4:70361738-70361757 | None:intergenic | 50.0% | |
| CATGTCCCTTTGCGAAACTC+GGG | - | chr3.4:70361142-70361161 | None:intergenic | 50.0% | |
| GAATGAACCCACGAGACATC+TGG | - | chr3.4:70361934-70361953 | None:intergenic | 50.0% | |
| GCATGTCCCTTTGCGAAACT+CGG | - | chr3.4:70361143-70361162 | None:intergenic | 50.0% | |
| GCTACCAATGGAGACATAGG+TGG | - | chr3.4:70361379-70361398 | None:intergenic | 50.0% | |
| GTGCTTCCGAATCGAACAGT+AGG | + | chr3.4:70361776-70361795 | MS.gene031959:CDS | 50.0% | |
| TTCATCCAGGGGAGAATGCT+AGG | + | chr3.4:70361074-70361093 | MS.gene031959:CDS | 50.0% | |
| ! | GCTTTGGCTTCGTGTCACAA+AGG | - | chr3.4:70361722-70361741 | None:intergenic | 50.0% |
| !! | ACATCTGGTTCGGCATGTTG+AGG | - | chr3.4:70361919-70361938 | None:intergenic | 50.0% |
| !! | AGCCTGGTTCTGTATTGTGC+AGG | - | chr3.4:70361220-70361239 | None:intergenic | 50.0% |
| !! | TCGATTCGGAAGCACCGATA+TGG | - | chr3.4:70361771-70361790 | None:intergenic | 50.0% |
| ATGCCGAACCAGATGTCTCG+TGG | + | chr3.4:70361923-70361942 | MS.gene031959:CDS | 55.0% | |
| CTTCTCCTAGCATTCTCCCC+TGG | - | chr3.4:70361082-70361101 | None:intergenic | 55.0% | |
| GGGCACGGAACACAGCTATA+AGG | - | chr3.4:70361121-70361140 | None:intergenic | 55.0% | |
| TGCCGAACCAGATGTCTCGT+GGG | + | chr3.4:70361924-70361943 | MS.gene031959:CDS | 55.0% | |
| CCTTTGCGAAACTCGGGGCA+CGG | - | chr3.4:70361136-70361155 | None:intergenic | 60.0% | |
| CGTGCCCCGAGTTTCGCAAA+GGG | + | chr3.4:70361134-70361153 | MS.gene031959:CDS | 60.0% | |
| GCATGTTGAGGCCGTGCAAC+GGG | - | chr3.4:70361907-70361926 | None:intergenic | 60.0% | |
| GGCATGTTGAGGCCGTGCAA+CGG | - | chr3.4:70361908-70361927 | None:intergenic | 60.0% | |
| CCGTGCCCCGAGTTTCGCAA+AGG | + | chr3.4:70361133-70361152 | MS.gene031959:CDS | 65.0% | |
| ! | CTGCTGCTTCGCCCGTTGCA+CGG | + | chr3.4:70361893-70361912 | MS.gene031959:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 70360509 | 70362065 | 70360509 | ID=MS.gene031959 |
| chr3.4 | mRNA | 70360509 | 70362065 | 70360509 | ID=MS.gene031959.t1;Parent=MS.gene031959 |
| chr3.4 | exon | 70360509 | 70362065 | 70360509 | ID=MS.gene031959.t1.exon1;Parent=MS.gene031959.t1 |
| chr3.4 | CDS | 70360509 | 70362065 | 70360509 | ID=cds.MS.gene031959.t1;Parent=MS.gene031959.t1 |
| Gene Sequence |
| Protein sequence |
