Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031960.t1 | XP_003600919.1 | 90.9 | 519 | 45 | 1 | 1 | 519 | 1 | 517 | 2.60E-274 | 954.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031960.t1 | Q9XEE6 | 47.9 | 568 | 223 | 16 | 10 | 517 | 33 | 587 | 1.9e-124 | 447.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031960.t1 | G7JBT0 | 90.9 | 519 | 45 | 1 | 1 | 519 | 1 | 517 | 1.9e-274 | 954.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene031960.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031960.t1 | MTR_3g070880 | 90.944 | 519 | 45 | 1 | 1 | 519 | 1 | 517 | 0.0 | 984 |
| MS.gene031960.t1 | MTR_5g082830 | 52.640 | 663 | 164 | 20 | 1 | 517 | 16 | 674 | 0.0 | 587 |
| MS.gene031960.t1 | MTR_5g071070 | 39.021 | 674 | 236 | 17 | 8 | 517 | 33 | 695 | 1.17e-140 | 422 |
| MS.gene031960.t1 | MTR_1g075890 | 43.091 | 550 | 207 | 16 | 2 | 460 | 25 | 559 | 3.74e-125 | 380 |
| MS.gene031960.t1 | MTR_5g071070 | 37.981 | 624 | 212 | 17 | 58 | 517 | 1 | 613 | 1.93e-119 | 365 |
| MS.gene031960.t1 | MTR_7g092070 | 35.303 | 660 | 234 | 19 | 8 | 494 | 45 | 684 | 5.03e-107 | 336 |
| MS.gene031960.t1 | MTR_3g464260 | 36.949 | 544 | 193 | 17 | 13 | 487 | 28 | 490 | 3.69e-87 | 278 |
| MS.gene031960.t1 | MTR_3g029590 | 32.335 | 668 | 251 | 20 | 8 | 494 | 43 | 690 | 5.80e-83 | 272 |
| MS.gene031960.t1 | MTR_3g435590 | 42.857 | 322 | 127 | 4 | 8 | 274 | 30 | 349 | 7.48e-82 | 263 |
| MS.gene031960.t1 | MTR_3g464280 | 36.811 | 508 | 189 | 16 | 26 | 460 | 33 | 481 | 2.29e-75 | 246 |
| MS.gene031960.t1 | MTR_1g050438 | 40.663 | 332 | 137 | 7 | 9 | 280 | 14 | 345 | 3.36e-74 | 246 |
| MS.gene031960.t1 | MTR_0728s0020 | 40.663 | 332 | 137 | 7 | 9 | 280 | 30 | 361 | 1.10e-73 | 245 |
| MS.gene031960.t1 | MTR_3g435680 | 47.867 | 211 | 82 | 3 | 103 | 289 | 67 | 273 | 7.84e-62 | 208 |
| MS.gene031960.t1 | MTR_3g103960 | 53.247 | 154 | 58 | 3 | 153 | 305 | 43 | 183 | 8.58e-48 | 167 |
| MS.gene031960.t1 | MTR_6g090380 | 62.963 | 108 | 40 | 0 | 158 | 265 | 98 | 205 | 5.11e-47 | 168 |
| MS.gene031960.t1 | MTR_8g102100 | 57.377 | 122 | 52 | 0 | 159 | 280 | 77 | 198 | 6.67e-47 | 168 |
| MS.gene031960.t1 | MTR_3g464270 | 35.676 | 370 | 171 | 14 | 162 | 485 | 8 | 356 | 3.02e-46 | 165 |
| MS.gene031960.t1 | MTR_3g464290 | 34.279 | 423 | 199 | 15 | 122 | 487 | 51 | 451 | 6.50e-46 | 167 |
| MS.gene031960.t1 | MTR_2g090605 | 58.559 | 111 | 46 | 0 | 163 | 273 | 77 | 187 | 2.08e-42 | 156 |
| MS.gene031960.t1 | MTR_4g078660 | 58.879 | 107 | 44 | 0 | 159 | 265 | 56 | 162 | 2.75e-42 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031960.t1 | AT3G55980 | 47.727 | 572 | 205 | 20 | 10 | 517 | 30 | 571 | 2.29e-154 | 453 |
| MS.gene031960.t1 | AT2G40140 | 47.569 | 576 | 229 | 16 | 2 | 517 | 25 | 587 | 4.37e-154 | 452 |
| MS.gene031960.t1 | AT2G40140 | 47.569 | 576 | 229 | 16 | 2 | 517 | 25 | 587 | 4.37e-154 | 452 |
| MS.gene031960.t1 | AT3G55980 | 47.727 | 572 | 205 | 20 | 10 | 517 | 97 | 638 | 3.20e-153 | 452 |
| MS.gene031960.t1 | AT5G58620 | 44.330 | 582 | 213 | 16 | 8 | 487 | 12 | 584 | 4.07e-140 | 417 |
| MS.gene031960.t1 | AT5G12850 | 51.073 | 233 | 81 | 7 | 139 | 341 | 235 | 464 | 3.96e-71 | 240 |
| MS.gene031960.t1 | AT5G12850 | 42.982 | 114 | 64 | 1 | 8 | 121 | 40 | 152 | 2.37e-24 | 107 |
| MS.gene031960.t1 | AT4G29190 | 52.121 | 165 | 67 | 3 | 148 | 300 | 64 | 228 | 7.03e-49 | 172 |
| MS.gene031960.t1 | AT2G19810 | 60.833 | 120 | 47 | 0 | 148 | 267 | 63 | 182 | 8.31e-49 | 172 |
| MS.gene031960.t1 | AT2G25900 | 55.474 | 137 | 56 | 1 | 159 | 295 | 86 | 217 | 8.90e-49 | 171 |
| MS.gene031960.t1 | AT2G25900 | 55.474 | 137 | 56 | 1 | 159 | 295 | 86 | 217 | 8.90e-49 | 171 |
| MS.gene031960.t1 | AT5G07500 | 56.098 | 123 | 54 | 0 | 143 | 265 | 32 | 154 | 8.09e-48 | 166 |
| MS.gene031960.t1 | AT1G03790 | 51.049 | 143 | 60 | 3 | 139 | 277 | 64 | 200 | 4.48e-41 | 152 |
| MS.gene031960.t1 | AT5G44260 | 52.308 | 130 | 55 | 2 | 139 | 267 | 42 | 165 | 1.17e-39 | 148 |
| MS.gene031960.t1 | AT2G41900 | 45.614 | 114 | 62 | 0 | 8 | 121 | 46 | 159 | 1.98e-27 | 117 |
Find 103 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACATGGTTCCTATTT+TGG | 0.050071 | 3.4:-70356526 | None:intergenic |
| TCTGAGAATTCTGAGATATT+TGG | 0.200828 | 3.4:+70356914 | MS.gene031960:CDS |
| GAGTTTAACAATCTCAAATT+TGG | 0.214609 | 3.4:-70355751 | None:intergenic |
| CTTATGATTGCTTCTTTGTT+TGG | 0.252453 | 3.4:+70355615 | MS.gene031960:CDS |
| CAGATTGGATTTCAAATGAT+TGG | 0.257763 | 3.4:+70356756 | MS.gene031960:CDS |
| GAAGTTGAGAAGAAAGATTC+AGG | 0.258178 | 3.4:+70355855 | MS.gene031960:CDS |
| CTTCTTTGTTTGGAAGCATT+AGG | 0.280824 | 3.4:+70355625 | MS.gene031960:CDS |
| CAGCTATAAGGATACTTCTT+TGG | 0.295350 | 3.4:-70356041 | None:intergenic |
| CACATGTAATTTCCATTCTT+AGG | 0.300468 | 3.4:-70356344 | None:intergenic |
| ATTCAAGTAAAGTTGAGTTT+TGG | 0.301880 | 3.4:-70355461 | None:intergenic |
| TTCTTTGTTTGGAAGCATTA+GGG | 0.311661 | 3.4:+70355626 | MS.gene031960:CDS |
| AAAACACCATTGTTTATATC+AGG | 0.317396 | 3.4:-70355900 | None:intergenic |
| GGTTTCAGCTGAACCAAAAT+AGG | 0.320831 | 3.4:+70356513 | MS.gene031960:CDS |
| ACTCACATGCATCTTTCTTC+TGG | 0.348032 | 3.4:-70356097 | None:intergenic |
| GCATTACATTGTGCTGTTGC+TGG | 0.358959 | 3.4:+70355717 | MS.gene031960:CDS |
| GGTGTTGAAACATTTGAAAT+TGG | 0.379750 | 3.4:-70356290 | None:intergenic |
| ATTTGAGATTGTTAAACTCT+TGG | 0.381581 | 3.4:+70355755 | MS.gene031960:CDS |
| AGGCCTTTGTATGCTTCTAC+TGG | 0.382036 | 3.4:+70356239 | MS.gene031960:CDS |
| ATATCAATGAGGCAGGGTTT+TGG | 0.392554 | 3.4:+70355541 | MS.gene031960:CDS |
| GCATGTCCCTTTGCGAAACT+CGG | 0.397119 | 3.4:-70356075 | None:intergenic |
| CTGCCCATGGTGATAACTTC+TGG | 0.401773 | 3.4:-70356967 | None:intergenic |
| AGATTGGATTTCAAATGATT+GGG | 0.403651 | 3.4:+70356757 | MS.gene031960:CDS |
| GTTAAACTCTTGGTTGATGC+TGG | 0.410340 | 3.4:+70355765 | MS.gene031960:CDS |
| CAAACAAAGAAGCAATCATA+AGG | 0.422681 | 3.4:-70355614 | None:intergenic |
| CAAAAGGGAAGTAGAAGAAA+AGG | 0.424560 | 3.4:+70355512 | MS.gene031960:CDS |
| ATGATATTGAAGCTTTCAAA+AGG | 0.425062 | 3.4:+70355496 | MS.gene031960:CDS |
| ACATCCGGTTCAACATGTTC+TGG | 0.431115 | 3.4:-70356857 | None:intergenic |
| TGCAATCTATGACTATGAAT+AGG | 0.431537 | 3.4:+70356492 | MS.gene031960:CDS |
| AAGGGATTTGTATCAAGAAA+TGG | 0.446940 | 3.4:+70356424 | MS.gene031960:CDS |
| GTTCATCCTACTGTTGGATT+CGG | 0.447818 | 3.4:-70356723 | None:intergenic |
| AAACAAAGAAGCAATCATAA+GGG | 0.448581 | 3.4:-70355613 | None:intergenic |
| GGGCACGGAACACAGCTATA+AGG | 0.448836 | 3.4:-70356053 | None:intergenic |
| AACATGTTCTGGCCGTGCCA+CGG | 0.451893 | 3.4:-70356846 | None:intergenic |
| TTCTCCCCTGGATGAACAAA+TGG | 0.453606 | 3.4:-70356002 | None:intergenic |
| CTGCAGCAGTGAAGAATTCA+AGG | 0.455073 | 3.4:+70356630 | MS.gene031960:CDS |
| CATGTCCCTTTGCGAAACTC+GGG | 0.458325 | 3.4:-70356074 | None:intergenic |
| CAAGAAATGGATTTGTTACA+TGG | 0.458953 | 3.4:+70356437 | MS.gene031960:CDS |
| GGCTATGATATCAATGAGGC+AGG | 0.459884 | 3.4:+70355534 | MS.gene031960:CDS |
| TGAACTCTGGTCACTCAGAT+TGG | 0.460181 | 3.4:+70356741 | MS.gene031960:CDS |
| CACCGCGATCCATAAAACTT+TGG | 0.461341 | 3.4:-70356676 | None:intergenic |
| GAGTGTCCATTTGTTCATCC+AGG | 0.473709 | 3.4:+70355996 | MS.gene031960:CDS |
| ACATGTTCTGGCCGTGCCAC+GGG | 0.474667 | 3.4:-70356845 | None:intergenic |
| GCTGATTCATCTCCTAAGAA+TGG | 0.478855 | 3.4:+70356332 | MS.gene031960:CDS |
| TTCATCCAGGGGAGAATGCT+AGG | 0.479775 | 3.4:+70356009 | MS.gene031960:CDS |
| ATGAGAAAACCATCAGCATA+TGG | 0.480414 | 3.4:+70356584 | MS.gene031960:CDS |
| TGCAATCGAGTAGGAGTTGA+AGG | 0.485579 | 3.4:-70356473 | None:intergenic |
| ACGGCCAGAACATGTTGAAC+CGG | 0.490202 | 3.4:+70356853 | MS.gene031960:CDS |
| ACCAGAGTTCATCCTACTGT+TGG | 0.492760 | 3.4:-70356729 | None:intergenic |
| CAAGGGGTTACACTCATGAT+TGG | 0.497804 | 3.4:+70355970 | MS.gene031960:CDS |
| GATGAAACAGTGTTGTTGAA+TGG | 0.499041 | 3.4:-70356557 | None:intergenic |
| GAATGAACCCACGAGACATC+CGG | 0.501123 | 3.4:-70356872 | None:intergenic |
| ATTTGATTCATCAGCTGCTA+TGG | 0.506008 | 3.4:+70356607 | MS.gene031960:CDS |
| ATCACCATGGGCAGAGCAGA+TGG | 0.529162 | 3.4:+70356976 | MS.gene031960:CDS |
| AACACCACCTATGTCTCCAT+TGG | 0.529230 | 3.4:+70356307 | MS.gene031960:CDS |
| AAAAGGGAAGTAGAAGAAAA+GGG | 0.532219 | 3.4:+70355513 | MS.gene031960:CDS |
| CTTCTCCTAGCATTCTCCCC+TGG | 0.532406 | 3.4:-70356014 | None:intergenic |
| GTTAATGTGAACATGGCAAT+TGG | 0.535532 | 3.4:+70355678 | MS.gene031960:CDS |
| GGTTCATTCGCTTGTTCAAG+AGG | 0.536739 | 3.4:+70356886 | MS.gene031960:CDS |
| GCTACCATCTGCTCTGCCCA+TGG | 0.541733 | 3.4:-70356980 | None:intergenic |
| CCGTGCCCCGAGTTTCGCAA+AGG | 0.542263 | 3.4:+70356068 | MS.gene031960:CDS |
| CGTGCCCCGAGTTTCGCAAA+GGG | 0.545575 | 3.4:+70356069 | MS.gene031960:CDS |
| ATTGGCAAAGATTCTTGTGA+AGG | 0.549932 | 3.4:-70356272 | None:intergenic |
| CAAAGTGAAGACTTGCTCAA+GGG | 0.550348 | 3.4:+70355953 | MS.gene031960:CDS |
| AGTGTCCATTTGTTCATCCA+GGG | 0.552058 | 3.4:+70355997 | MS.gene031960:CDS |
| AGCCTTGTTCTGTATTGTGC+AGG | 0.555273 | 3.4:-70356152 | None:intergenic |
| TCAGCTACCAATGGAGACAT+AGG | 0.556570 | 3.4:-70356314 | None:intergenic |
| TAGTTGCTTCGCCCGTGGCA+CGG | 0.561386 | 3.4:+70356834 | MS.gene031960:CDS |
| TCAAAGTGAAGACTTGCTCA+AGG | 0.569283 | 3.4:+70355952 | MS.gene031960:CDS |
| TGATATTGAAGCTTTCAAAA+GGG | 0.570886 | 3.4:+70355497 | MS.gene031960:CDS |
| ATGTTGAACCGGATGTCTCG+TGG | 0.581147 | 3.4:+70356864 | MS.gene031960:CDS |
| CCTTTGCGAAACTCGGGGCA+CGG | 0.588011 | 3.4:-70356068 | None:intergenic |
| TATGGTAGTTGCTTCGCCCG+TGG | 0.589438 | 3.4:+70356829 | MS.gene031960:CDS |
| TTACATTGTGCTGTTGCTGG+TGG | 0.591769 | 3.4:+70355720 | MS.gene031960:CDS |
| GGAGATGAATCAGCTACCAA+TGG | 0.593824 | 3.4:-70356323 | None:intergenic |
| ACTTTGGCTTCGTGTCGCAA+AGG | 0.595220 | 3.4:-70356660 | None:intergenic |
| GAATCAAATCCATATGCTGA+TGG | 0.601293 | 3.4:-70356593 | None:intergenic |
| AAAGTGAAGACTTGCTCAAG+GGG | 0.602277 | 3.4:+70355954 | MS.gene031960:CDS |
| TCCAACAGTAGGATGAACTC+TGG | 0.604125 | 3.4:+70356728 | MS.gene031960:CDS |
| AAACATGGTTAATGTGAACA+TGG | 0.608674 | 3.4:+70355671 | MS.gene031960:CDS |
| TAACCAGAAGTTATCACCAT+GGG | 0.608964 | 3.4:+70356964 | MS.gene031960:CDS |
| GTCATAGATTGCAATCGAGT+AGG | 0.610586 | 3.4:-70356482 | None:intergenic |
| CTAAGAATGGAAATTACATG+TGG | 0.612183 | 3.4:+70356345 | MS.gene031960:CDS |
| TTTGTTTGGAAGCATTAGGG+TGG | 0.614081 | 3.4:+70355629 | MS.gene031960:CDS |
| CACACAAACATGAAGAGTTG+AGG | 0.614467 | 3.4:+70356219 | MS.gene031960:CDS |
| ATGGATAATTTGCTTGAACA+TGG | 0.617719 | 3.4:-70356538 | None:intergenic |
| ATGTCCCTTTGCGAAACTCG+GGG | 0.621584 | 3.4:-70356073 | None:intergenic |
| CTGAGATATTTGGTGCTGAG+CGG | 0.624831 | 3.4:+70356924 | MS.gene031960:CDS |
| GTGCTTCCGAATCCAACAGT+AGG | 0.625292 | 3.4:+70356717 | MS.gene031960:CDS |
| TGTTGAACCGGATGTCTCGT+GGG | 0.635368 | 3.4:+70356865 | MS.gene031960:CDS |
| TCATTGCCTGATATAAACAA+TGG | 0.636775 | 3.4:+70355894 | MS.gene031960:CDS |
| AACAAAGAAGCAATCATAAG+GGG | 0.639045 | 3.4:-70355612 | None:intergenic |
| GTGTCCATTTGTTCATCCAG+GGG | 0.641621 | 3.4:+70355998 | MS.gene031960:CDS |
| ATCCTGCACAATACAGAACA+AGG | 0.644193 | 3.4:+70356150 | MS.gene031960:CDS |
| TGGATTCGGAAGCACTGATG+TGG | 0.653710 | 3.4:-70356709 | None:intergenic |
| ATATATCATTGAAACAAACA+TGG | 0.659164 | 3.4:+70355656 | MS.gene031960:CDS |
| GCTATGATATCAATGAGGCA+GGG | 0.681589 | 3.4:+70355535 | MS.gene031960:CDS |
| GCTACCAATGGAGACATAGG+TGG | 0.695473 | 3.4:-70356311 | None:intergenic |
| ATAACCAGAAGTTATCACCA+TGG | 0.698019 | 3.4:+70356963 | MS.gene031960:CDS |
| AAAGGGCTATGATATCAATG+AGG | 0.712259 | 3.4:+70355530 | MS.gene031960:CDS |
| GAACCAGTAGAAGCATACAA+AGG | 0.717416 | 3.4:-70356242 | None:intergenic |
| AAATATCTCAGAATTCTCAG+AGG | 0.724613 | 3.4:-70356912 | None:intergenic |
| GATGCATGTGAGTATTCACA+TGG | 0.742964 | 3.4:+70356107 | MS.gene031960:CDS |
| AATCGAGTAGGAGTTGAAGG+TGG | 0.744056 | 3.4:-70356470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCATTGAAACAAACA+TGG | + | chr3.4:70355656-70355675 | MS.gene031960:CDS | 20.0% |
| !!! | ACTTCTAATTCTTTTGATTT+AGG | - | chr3.4:70355840-70355859 | None:intergenic | 20.0% |
| !!! | TTTTGGATTTAGAAATTCTA+TGG | + | chr3.4:70356811-70356830 | MS.gene031960:CDS | 20.0% |
| !!! | TTTTGGTATTGTAGAAAAAT+AGG | + | chr3.4:70355558-70355577 | MS.gene031960:CDS | 20.0% |
| ! | AAAACACCATTGTTTATATC+AGG | - | chr3.4:70355903-70355922 | None:intergenic | 25.0% |
| ! | AAACAAAGAAGCAATCATAA+GGG | - | chr3.4:70355616-70355635 | None:intergenic | 25.0% |
| ! | AGATTGGATTTCAAATGATT+GGG | + | chr3.4:70356757-70356776 | MS.gene031960:CDS | 25.0% |
| ! | ATGATATTGAAGCTTTCAAA+AGG | + | chr3.4:70355496-70355515 | MS.gene031960:CDS | 25.0% |
| ! | GAGTTTAACAATCTCAAATT+TGG | - | chr3.4:70355754-70355773 | None:intergenic | 25.0% |
| ! | TGATATTGAAGCTTTCAAAA+GGG | + | chr3.4:70355497-70355516 | MS.gene031960:CDS | 25.0% |
| !! | ATTCAAGTAAAGTTGAGTTT+TGG | - | chr3.4:70355464-70355483 | None:intergenic | 25.0% |
| !! | ATTTGAGATTGTTAAACTCT+TGG | + | chr3.4:70355755-70355774 | MS.gene031960:CDS | 25.0% |
| !! | TTGAAAAAATCTGCTTCTTT+TGG | + | chr3.4:70356794-70356813 | MS.gene031960:CDS | 25.0% |
| AAAAGGGAAGTAGAAGAAAA+GGG | + | chr3.4:70355513-70355532 | MS.gene031960:CDS | 30.0% | |
| AAACATGGTTAATGTGAACA+TGG | + | chr3.4:70355671-70355690 | MS.gene031960:CDS | 30.0% | |
| AAATATCTCAGAATTCTCAG+AGG | - | chr3.4:70356915-70356934 | None:intergenic | 30.0% | |
| AACAAAGAAGCAATCATAAG+GGG | - | chr3.4:70355615-70355634 | None:intergenic | 30.0% | |
| AAGGGATTTGTATCAAGAAA+TGG | + | chr3.4:70356424-70356443 | MS.gene031960:CDS | 30.0% | |
| CAAACAAAGAAGCAATCATA+AGG | - | chr3.4:70355617-70355636 | None:intergenic | 30.0% | |
| CACATGTAATTTCCATTCTT+AGG | - | chr3.4:70356347-70356366 | None:intergenic | 30.0% | |
| CAGATTGGATTTCAAATGAT+TGG | + | chr3.4:70356756-70356775 | MS.gene031960:CDS | 30.0% | |
| CTAAGAATGGAAATTACATG+TGG | + | chr3.4:70356345-70356364 | MS.gene031960:CDS | 30.0% | |
| CTTATGATTGCTTCTTTGTT+TGG | + | chr3.4:70355615-70355634 | MS.gene031960:CDS | 30.0% | |
| TCATTGCCTGATATAAACAA+TGG | + | chr3.4:70355894-70355913 | MS.gene031960:CDS | 30.0% | |
| TGCAATCTATGACTATGAAT+AGG | + | chr3.4:70356492-70356511 | MS.gene031960:CDS | 30.0% | |
| ! | GGTGTTGAAACATTTGAAAT+TGG | - | chr3.4:70356293-70356312 | None:intergenic | 30.0% |
| !! | ATGGATAATTTGCTTGAACA+TGG | - | chr3.4:70356541-70356560 | None:intergenic | 30.0% |
| !! | CAAGAAATGGATTTGTTACA+TGG | + | chr3.4:70356437-70356456 | MS.gene031960:CDS | 30.0% |
| !! | TCTGAGAATTCTGAGATATT+TGG | + | chr3.4:70356914-70356933 | MS.gene031960:CDS | 30.0% |
| !! | TTCTTTGTTTGGAAGCATTA+GGG | + | chr3.4:70355626-70355645 | MS.gene031960:CDS | 30.0% |
| !!! | CTGCTTAATTTTTTCGTCAA+GGG | - | chr3.4:70355805-70355824 | None:intergenic | 30.0% |
| !!! | TCTGCTTAATTTTTTCGTCA+AGG | - | chr3.4:70355806-70355825 | None:intergenic | 30.0% |
| AAAGGGCTATGATATCAATG+AGG | + | chr3.4:70355530-70355549 | MS.gene031960:CDS | 35.0% | |
| ATAACCAGAAGTTATCACCA+TGG | + | chr3.4:70356963-70356982 | MS.gene031960:CDS | 35.0% | |
| ATGAGAAAACCATCAGCATA+TGG | + | chr3.4:70356584-70356603 | MS.gene031960:CDS | 35.0% | |
| ATTGGCAAAGATTCTTGTGA+AGG | - | chr3.4:70356275-70356294 | None:intergenic | 35.0% | |
| ATTTGATTCATCAGCTGCTA+TGG | + | chr3.4:70356607-70356626 | MS.gene031960:CDS | 35.0% | |
| CAAAAGGGAAGTAGAAGAAA+AGG | + | chr3.4:70355512-70355531 | MS.gene031960:CDS | 35.0% | |
| CAGCTATAAGGATACTTCTT+TGG | - | chr3.4:70356044-70356063 | None:intergenic | 35.0% | |
| GAAGTTGAGAAGAAAGATTC+AGG | + | chr3.4:70355855-70355874 | MS.gene031960:CDS | 35.0% | |
| GAATCAAATCCATATGCTGA+TGG | - | chr3.4:70356596-70356615 | None:intergenic | 35.0% | |
| GTTAATGTGAACATGGCAAT+TGG | + | chr3.4:70355678-70355697 | MS.gene031960:CDS | 35.0% | |
| TAACCAGAAGTTATCACCAT+GGG | + | chr3.4:70356964-70356983 | MS.gene031960:CDS | 35.0% | |
| ! | CTTGAACATGGTTCCTATTT+TGG | - | chr3.4:70356529-70356548 | None:intergenic | 35.0% |
| ! | GAAAAATGCTTTGAGTGCAA+GGG | + | chr3.4:70356406-70356425 | MS.gene031960:CDS | 35.0% |
| ! | GATGAAACAGTGTTGTTGAA+TGG | - | chr3.4:70356560-70356579 | None:intergenic | 35.0% |
| ! | TATGCTGATGGTTTTCTCAT+AGG | - | chr3.4:70356584-70356603 | None:intergenic | 35.0% |
| ! | TGAAAAATGCTTTGAGTGCA+AGG | + | chr3.4:70356405-70356424 | MS.gene031960:CDS | 35.0% |
| !! | CTTCTTTGTTTGGAAGCATT+AGG | + | chr3.4:70355625-70355644 | MS.gene031960:CDS | 35.0% |
| ACTCACATGCATCTTTCTTC+TGG | - | chr3.4:70356100-70356119 | None:intergenic | 40.0% | |
| AGTGTCCATTTGTTCATCCA+GGG | + | chr3.4:70355997-70356016 | MS.gene031960:CDS | 40.0% | |
| ATCCTGCACAATACAGAACA+AGG | + | chr3.4:70356150-70356169 | MS.gene031960:CDS | 40.0% | |
| CACACAAACATGAAGAGTTG+AGG | + | chr3.4:70356219-70356238 | MS.gene031960:CDS | 40.0% | |
| GATGCATGTGAGTATTCACA+TGG | + | chr3.4:70356107-70356126 | MS.gene031960:CDS | 40.0% | |
| GCTATGATATCAATGAGGCA+GGG | + | chr3.4:70355535-70355554 | MS.gene031960:CDS | 40.0% | |
| GGTTTCAGCTGAACCAAAAT+AGG | + | chr3.4:70356513-70356532 | MS.gene031960:CDS | 40.0% | |
| GTCATAGATTGCAATCGAGT+AGG | - | chr3.4:70356485-70356504 | None:intergenic | 40.0% | |
| GTTCATCCTACTGTTGGATT+CGG | - | chr3.4:70356726-70356745 | None:intergenic | 40.0% | |
| ! | AAAGTGAAGACTTGCTCAAG+GGG | + | chr3.4:70355954-70355973 | MS.gene031960:CDS | 40.0% |
| ! | ATATCAATGAGGCAGGGTTT+TGG | + | chr3.4:70355541-70355560 | MS.gene031960:CDS | 40.0% |
| ! | CAAAGTGAAGACTTGCTCAA+GGG | + | chr3.4:70355953-70355972 | MS.gene031960:CDS | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+AGG | - | chr3.4:70356245-70356264 | None:intergenic | 40.0% |
| ! | GACACGAAGCCAAAGTTTTA+TGG | + | chr3.4:70356667-70356686 | MS.gene031960:CDS | 40.0% |
| ! | GCTGATTCATCTCCTAAGAA+TGG | + | chr3.4:70356332-70356351 | MS.gene031960:CDS | 40.0% |
| ! | GTTAAACTCTTGGTTGATGC+TGG | + | chr3.4:70355765-70355784 | MS.gene031960:CDS | 40.0% |
| ! | TCAAAGTGAAGACTTGCTCA+AGG | + | chr3.4:70355952-70355971 | MS.gene031960:CDS | 40.0% |
| !! | AGCCAAAGTTTTATGGATCG+CGG | + | chr3.4:70356674-70356693 | MS.gene031960:CDS | 40.0% |
| !! | GCATTTTTCAGCTGCAATGA+AGG | - | chr3.4:70356395-70356414 | None:intergenic | 40.0% |
| !! | TTTGTTTGGAAGCATTAGGG+TGG | + | chr3.4:70355629-70355648 | MS.gene031960:CDS | 40.0% |
| !! | TTTTTCAGCTGCAATGAAGG+TGG | - | chr3.4:70356392-70356411 | None:intergenic | 40.0% |
| AACACCACCTATGTCTCCAT+TGG | + | chr3.4:70356307-70356326 | MS.gene031960:CDS | 45.0% | |
| AATCGAGTAGGAGTTGAAGG+TGG | - | chr3.4:70356473-70356492 | None:intergenic | 45.0% | |
| ACATCCGGTTCAACATGTTC+TGG | - | chr3.4:70356860-70356879 | None:intergenic | 45.0% | |
| ACCAGAGTTCATCCTACTGT+TGG | - | chr3.4:70356732-70356751 | None:intergenic | 45.0% | |
| AGGCCTTTGTATGCTTCTAC+TGG | + | chr3.4:70356239-70356258 | MS.gene031960:CDS | 45.0% | |
| CAAGGGGTTACACTCATGAT+TGG | + | chr3.4:70355970-70355989 | MS.gene031960:CDS | 45.0% | |
| CACCGCGATCCATAAAACTT+TGG | - | chr3.4:70356679-70356698 | None:intergenic | 45.0% | |
| CTGCAGCAGTGAAGAATTCA+AGG | + | chr3.4:70356630-70356649 | MS.gene031960:CDS | 45.0% | |
| GAGTGTCCATTTGTTCATCC+AGG | + | chr3.4:70355996-70356015 | MS.gene031960:CDS | 45.0% | |
| GGAGATGAATCAGCTACCAA+TGG | - | chr3.4:70356326-70356345 | None:intergenic | 45.0% | |
| GGCTATGATATCAATGAGGC+AGG | + | chr3.4:70355534-70355553 | MS.gene031960:CDS | 45.0% | |
| GGTTCATTCGCTTGTTCAAG+AGG | + | chr3.4:70356886-70356905 | MS.gene031960:CDS | 45.0% | |
| GTGTCCATTTGTTCATCCAG+GGG | + | chr3.4:70355998-70356017 | MS.gene031960:CDS | 45.0% | |
| TCAGCTACCAATGGAGACAT+AGG | - | chr3.4:70356317-70356336 | None:intergenic | 45.0% | |
| TCCAACAGTAGGATGAACTC+TGG | + | chr3.4:70356728-70356747 | MS.gene031960:CDS | 45.0% | |
| TGAACTCTGGTCACTCAGAT+TGG | + | chr3.4:70356741-70356760 | MS.gene031960:CDS | 45.0% | |
| TGCAATCGAGTAGGAGTTGA+AGG | - | chr3.4:70356476-70356495 | None:intergenic | 45.0% | |
| TTCTCCCCTGGATGAACAAA+TGG | - | chr3.4:70356005-70356024 | None:intergenic | 45.0% | |
| ! | GCATTACATTGTGCTGTTGC+TGG | + | chr3.4:70355717-70355736 | MS.gene031960:CDS | 45.0% |
| ! | TTACATTGTGCTGTTGCTGG+TGG | + | chr3.4:70355720-70355739 | MS.gene031960:CDS | 45.0% |
| !! | AGCCTTGTTCTGTATTGTGC+AGG | - | chr3.4:70356155-70356174 | None:intergenic | 45.0% |
| !! | CTGAGATATTTGGTGCTGAG+CGG | + | chr3.4:70356924-70356943 | MS.gene031960:CDS | 45.0% |
| ACGGCCAGAACATGTTGAAC+CGG | + | chr3.4:70356853-70356872 | MS.gene031960:CDS | 50.0% | |
| ATGTCCCTTTGCGAAACTCG+GGG | - | chr3.4:70356076-70356095 | None:intergenic | 50.0% | |
| ATGTTGAACCGGATGTCTCG+TGG | + | chr3.4:70356864-70356883 | MS.gene031960:CDS | 50.0% | |
| CATGTCCCTTTGCGAAACTC+GGG | - | chr3.4:70356077-70356096 | None:intergenic | 50.0% | |
| CTGCCCATGGTGATAACTTC+TGG | - | chr3.4:70356970-70356989 | None:intergenic | 50.0% | |
| GAATGAACCCACGAGACATC+CGG | - | chr3.4:70356875-70356894 | None:intergenic | 50.0% | |
| GCATGTCCCTTTGCGAAACT+CGG | - | chr3.4:70356078-70356097 | None:intergenic | 50.0% | |
| GCTACCAATGGAGACATAGG+TGG | - | chr3.4:70356314-70356333 | None:intergenic | 50.0% | |
| GTGCTTCCGAATCCAACAGT+AGG | + | chr3.4:70356717-70356736 | MS.gene031960:CDS | 50.0% | |
| TGTTGAACCGGATGTCTCGT+GGG | + | chr3.4:70356865-70356884 | MS.gene031960:CDS | 50.0% | |
| TTCATCCAGGGGAGAATGCT+AGG | + | chr3.4:70356009-70356028 | MS.gene031960:CDS | 50.0% | |
| ! | ACTTTGGCTTCGTGTCGCAA+AGG | - | chr3.4:70356663-70356682 | None:intergenic | 50.0% |
| !! | TGGATTCGGAAGCACTGATG+TGG | - | chr3.4:70356712-70356731 | None:intergenic | 50.0% |
| AACATGTTCTGGCCGTGCCA+CGG | - | chr3.4:70356849-70356868 | None:intergenic | 55.0% | |
| ATCACCATGGGCAGAGCAGA+TGG | + | chr3.4:70356976-70356995 | MS.gene031960:CDS | 55.0% | |
| CTTCTCCTAGCATTCTCCCC+TGG | - | chr3.4:70356017-70356036 | None:intergenic | 55.0% | |
| GGGCACGGAACACAGCTATA+AGG | - | chr3.4:70356056-70356075 | None:intergenic | 55.0% | |
| TATGGTAGTTGCTTCGCCCG+TGG | + | chr3.4:70356829-70356848 | MS.gene031960:CDS | 55.0% | |
| ACATGTTCTGGCCGTGCCAC+GGG | - | chr3.4:70356848-70356867 | None:intergenic | 60.0% | |
| CCTTTGCGAAACTCGGGGCA+CGG | - | chr3.4:70356071-70356090 | None:intergenic | 60.0% | |
| CGTGCCCCGAGTTTCGCAAA+GGG | + | chr3.4:70356069-70356088 | MS.gene031960:CDS | 60.0% | |
| GCTACCATCTGCTCTGCCCA+TGG | - | chr3.4:70356983-70357002 | None:intergenic | 60.0% | |
| TAGTTGCTTCGCCCGTGGCA+CGG | + | chr3.4:70356834-70356853 | MS.gene031960:CDS | 60.0% | |
| CCGTGCCCCGAGTTTCGCAA+AGG | + | chr3.4:70356068-70356087 | MS.gene031960:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 70355447 | 70357006 | 70355447 | ID=MS.gene031960 |
| chr3.4 | mRNA | 70355447 | 70357006 | 70355447 | ID=MS.gene031960.t1;Parent=MS.gene031960 |
| chr3.4 | exon | 70355447 | 70357006 | 70355447 | ID=MS.gene031960.t1.exon1;Parent=MS.gene031960.t1 |
| chr3.4 | CDS | 70355447 | 70357006 | 70355447 | ID=cds.MS.gene031960.t1;Parent=MS.gene031960.t1 |
| Gene Sequence |
| Protein sequence |
