AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032013

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032013.t1 MTR_3g070030 84.874 357 42 4 1 350 1 352 0.0 609
MS.gene032013.t1 MTR_3g070040 80.692 347 47 7 12 350 1 335 0.0 545
MS.gene032013.t1 MTR_7g011130 71.809 376 56 6 1 350 1 352 0.0 513
MS.gene032013.t1 MTR_7g011120 70.487 349 54 6 12 350 1 310 9.65e-168 470
MS.gene032013.t1 MTR_6g012670 48.433 351 123 9 14 350 15 321 3.38e-95 286
MS.gene032013.t1 MTR_4g108760 46.240 359 162 12 13 350 11 359 1.19e-86 265
MS.gene032013.t1 MTR_3g435150 56.828 227 86 4 5 223 2 224 2.56e-77 239
MS.gene032013.t1 MTR_2g078700 68.987 158 46 2 19 174 23 179 9.57e-74 233
MS.gene032013.t1 MTR_6g032770 58.115 191 77 2 14 202 13 202 5.51e-72 228
MS.gene032013.t1 MTR_7g085260 43.202 331 166 10 5 324 3 322 2.72e-71 227
MS.gene032013.t1 MTR_6g084430 58.101 179 70 2 19 197 5 178 5.68e-68 216
MS.gene032013.t1 MTR_1g008740 53.659 205 77 4 19 220 13 202 1.94e-67 216
MS.gene032013.t1 MTR_1g008740 53.659 205 77 4 19 220 27 216 2.50e-67 216
MS.gene032013.t1 MTR_3g109340 52.821 195 77 4 19 202 22 212 2.41e-65 211
MS.gene032013.t1 MTR_3g109340 52.821 195 76 4 19 202 22 211 4.38e-65 210
MS.gene032013.t1 MTR_3g116070 68.992 129 37 2 19 144 23 151 4.11e-60 197
MS.gene032013.t1 MTR_2g064470 54.777 157 65 3 16 171 8 159 2.96e-55 183
MS.gene032013.t1 MTR_5g041940 51.534 163 78 1 17 178 1 163 8.11e-55 181
MS.gene032013.t1 MTR_5g012080 48.756 201 85 6 20 208 8 202 2.82e-54 182
MS.gene032013.t1 MTR_4g101680 54.777 157 57 3 20 170 8 156 3.60e-54 182
MS.gene032013.t1 MTR_4g036030 37.956 274 142 6 20 276 8 270 5.05e-54 181
MS.gene032013.t1 MTR_8g024480 50.829 181 79 3 14 184 10 190 6.59e-54 183
MS.gene032013.t1 MTR_4g035590 57.862 159 58 2 20 175 9 161 8.44e-54 181
MS.gene032013.t1 MTR_8g059170 50.932 161 78 1 16 176 11 170 1.06e-53 180
MS.gene032013.t1 MTR_4g081870 50.568 176 81 3 18 188 8 182 1.38e-53 177
MS.gene032013.t1 MTR_3g093050 50.000 182 84 3 19 198 22 198 4.00e-53 185
MS.gene032013.t1 MTR_3g093050 50.000 182 84 3 19 198 22 198 4.05e-53 184
MS.gene032013.t1 MTR_2g062730 42.857 259 104 13 16 245 7 250 1.45e-52 177
MS.gene032013.t1 MTR_1g069805 39.316 234 118 5 19 250 10 221 2.53e-52 174
MS.gene032013.t1 MTR_3g093040 51.190 168 70 3 17 175 106 270 4.13e-52 175
MS.gene032013.t1 MTR_5g069030 49.180 183 86 3 18 198 24 201 1.11e-51 181
MS.gene032013.t1 MTR_7g085220 48.555 173 79 2 12 174 1 173 1.92e-51 174
MS.gene032013.t1 MTR_2g079990 49.689 161 78 1 16 176 13 170 5.11e-51 173
MS.gene032013.t1 MTR_8g094580 48.851 174 81 3 17 186 5 174 5.26e-51 171
MS.gene032013.t1 MTR_1g096430 51.592 157 62 3 20 170 8 156 7.16e-51 172
MS.gene032013.t1 MTR_3g088110 49.677 155 77 1 16 170 4 157 1.19e-50 171
MS.gene032013.t1 MTR_6g477900 53.205 156 68 2 17 170 4 156 4.82e-50 167
MS.gene032013.t1 MTR_5g021710 43.069 202 98 4 12 204 1 194 4.96e-50 171
MS.gene032013.t1 MTR_8g076110 51.948 154 66 3 20 170 7 155 7.44e-50 169
MS.gene032013.t1 MTR_7g100990 50.920 163 77 2 11 170 3 165 1.11e-49 169
MS.gene032013.t1 MTR_2g064090 51.875 160 65 3 17 170 4 157 1.35e-49 169
MS.gene032013.t1 MTR_2g080010 46.784 171 81 2 15 175 11 181 3.58e-49 169
MS.gene032013.t1 MTR_7g097090 49.342 152 68 2 19 168 10 154 1.26e-48 165
MS.gene032013.t1 MTR_2g079990 44.086 186 79 2 16 176 13 198 1.83e-48 167
MS.gene032013.t1 MTR_5g076850 48.000 175 86 2 17 189 4 175 1.99e-48 172
MS.gene032013.t1 MTR_3g096920 49.032 155 78 1 16 170 4 157 2.12e-48 165
MS.gene032013.t1 MTR_3g064580 51.923 156 71 2 17 170 4 157 4.25e-48 172
MS.gene032013.t1 MTR_4g089135 46.023 176 73 3 19 172 15 190 5.99e-48 165
MS.gene032013.t1 MTR_7g005280 50.898 167 70 5 13 176 9 166 8.26e-48 162
MS.gene032013.t1 MTR_2157s0010 49.405 168 76 3 12 170 1 168 1.60e-47 162
MS.gene032013.t1 MTR_2g093810 50.000 152 73 2 19 167 14 165 7.97e-46 159
MS.gene032013.t1 MTR_8g063550 45.562 169 86 3 18 184 5 169 8.96e-46 159
MS.gene032013.t1 MTR_8g467490 47.024 168 76 4 15 172 11 175 1.20e-45 160
MS.gene032013.t1 MTR_3g096920 54.615 130 58 1 16 145 4 132 1.88e-45 158
MS.gene032013.t1 MTR_8g063550 45.614 171 83 4 18 184 5 169 2.61e-45 160
MS.gene032013.t1 MTR_8g063550 45.562 169 86 3 18 184 5 169 3.06e-45 160
MS.gene032013.t1 MTR_1g090723 42.273 220 112 7 22 234 11 222 3.40e-45 163
MS.gene032013.t1 MTR_1g090723 42.273 220 113 7 22 234 11 223 5.16e-45 163
MS.gene032013.t1 MTR_1g090723 42.273 220 112 7 22 234 11 222 5.70e-45 163
MS.gene032013.t1 MTR_6g011860 46.875 160 74 3 22 172 18 175 6.64e-45 158
MS.gene032013.t1 MTR_3g096140 34.701 268 151 8 12 275 1 248 3.28e-44 153
MS.gene032013.t1 MTR_5g040420 46.108 167 78 4 15 172 11 174 3.58e-44 156
MS.gene032013.t1 MTR_8g093580 44.444 171 85 4 18 184 5 169 1.43e-43 157
MS.gene032013.t1 MTR_5g014300 46.951 164 72 3 17 171 4 161 1.78e-43 153
MS.gene032013.t1 MTR_4g098630 44.444 171 87 3 15 180 2 169 1.97e-43 152
MS.gene032013.t1 MTR_3g096140 44.571 175 90 4 12 184 1 170 1.99e-43 154
MS.gene032013.t1 MTR_0036s0150 47.879 165 78 4 22 183 8 167 3.22e-43 157
MS.gene032013.t1 MTR_1g097300 48.795 166 75 4 22 183 22 181 1.91e-42 155
MS.gene032013.t1 MTR_5g090970 43.605 172 86 4 8 170 9 178 2.17e-42 150
MS.gene032013.t1 MTR_4g134460 36.940 268 150 6 22 288 57 306 1.22e-41 150
MS.gene032013.t1 MTR_2g068880 35.152 330 157 16 1 299 1 304 5.47e-41 146
MS.gene032013.t1 MTR_2g068920 43.523 193 90 8 1 176 1 191 6.87e-41 145
MS.gene032013.t1 MTR_5g090970 43.023 172 86 4 8 170 9 177 1.37e-40 145
MS.gene032013.t1 MTR_2g086880 53.600 125 56 2 19 142 19 142 3.37e-40 148
MS.gene032013.t1 MTR_2g086880 53.600 125 56 2 19 142 19 142 4.57e-40 149
MS.gene032013.t1 MTR_1g090720 46.471 170 85 3 21 185 44 212 7.66e-40 147
MS.gene032013.t1 MTR_4g075980 40.331 181 93 4 1 178 1 169 1.06e-37 137
MS.gene032013.t1 MTR_8g099750 41.875 160 87 3 12 167 7 164 7.62e-37 132
MS.gene032013.t1 MTR_8g023840 54.198 131 54 5 20 145 12 141 1.17e-36 137
MS.gene032013.t1 MTR_3g096140 44.371 151 78 3 36 184 3 149 2.09e-36 134
MS.gene032013.t1 MTR_3g098810 42.169 166 87 4 12 170 7 170 4.13e-35 129
MS.gene032013.t1 MTR_8g023860 47.059 153 67 7 20 167 13 156 1.24e-34 131
MS.gene032013.t1 MTR_3g098810 44.928 138 70 2 12 145 7 142 3.94e-33 121
MS.gene032013.t1 MTR_8g094580 50.806 124 53 3 67 186 1 120 1.04e-32 122
MS.gene032013.t1 MTR_4g052620 42.038 157 83 4 19 168 5 160 1.16e-32 122
MS.gene032013.t1 MTR_2g086690 40.385 156 86 4 20 168 5 160 1.00e-30 117
MS.gene032013.t1 MTR_8g023930 39.320 206 99 9 19 217 24 210 1.31e-30 121
MS.gene032013.t1 MTR_8g023900 35.366 246 115 13 21 242 195 420 2.67e-29 117
MS.gene032013.t1 MTR_8g023900 41.875 160 75 7 19 170 12 161 3.27e-27 112
MS.gene032013.t1 MTR_7g105170 38.824 170 93 7 19 178 4 172 4.28e-29 113
MS.gene032013.t1 MTR_2g064730 73.684 76 15 2 208 278 6 81 4.04e-28 105
MS.gene032013.t1 MTR_8g023880 46.528 144 55 7 19 143 7 147 9.23e-27 107
MS.gene032013.t1 MTR_4g094302 31.915 188 115 3 19 201 11 190 5.74e-25 100
MS.gene032013.t1 MTR_7g070140 54.667 75 32 1 72 144 17 91 2.20e-23 94.4
MS.gene032013.t1 MTR_4g094302 37.500 128 70 2 19 144 11 130 1.22e-22 93.2
MS.gene032013.t1 MTR_3g096400 35.714 168 89 6 15 171 3 162 1.34e-20 89.0
MS.gene032013.t1 MTR_8g093790 37.267 161 75 6 17 177 8 142 1.63e-19 85.5
MS.gene032013.t1 MTR_7g083360 35.075 134 81 5 12 142 3 133 6.63e-17 77.4
MS.gene032013.t1 MTR_7g083330 32.609 138 87 5 8 142 7 141 1.38e-16 77.4
MS.gene032013.t1 MTR_2g014680 34.356 163 88 5 2 147 36 196 8.30e-16 77.4
MS.gene032013.t1 MTR_7g083370 31.387 137 88 4 14 147 5 138 7.90e-15 71.2
MS.gene032013.t1 MTR_4g088245 30.208 192 107 6 2 174 51 234 3.28e-14 72.8
MS.gene032013.t1 MTR_8g069160 31.481 162 94 4 2 147 51 211 4.46e-14 71.6
MS.gene032013.t1 MTR_8g102240 32.386 176 82 9 19 168 47 211 8.87e-13 69.3
MS.gene032013.t1 MTR_8g102240 32.386 176 82 9 19 168 47 211 8.89e-13 69.3
MS.gene032013.t1 MTR_7g070150 46.032 63 22 2 111 170 4 57 1.35e-11 60.8
MS.gene032013.t1 MTR_1g093680 31.928 166 88 8 19 168 58 214 2.81e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032013.t1 AT5G61430 45.378 357 146 12 13 350 10 336 3.06e-89 271
MS.gene032013.t1 AT5G07680 45.190 343 165 7 10 350 8 329 1.66e-86 264
MS.gene032013.t1 AT5G07680 46.269 335 155 8 19 350 3 315 4.09e-85 260
MS.gene032013.t1 AT3G29035 64.943 174 60 1 3 176 8 180 2.88e-74 233
MS.gene032013.t1 AT5G39610 66.667 165 54 1 13 177 14 177 6.16e-74 230
MS.gene032013.t1 AT5G18270 66.038 159 52 2 15 172 17 174 3.82e-72 228
MS.gene032013.t1 AT5G18270 66.038 159 52 2 15 172 17 174 6.41e-72 227
MS.gene032013.t1 AT5G53950 68.831 154 45 2 19 170 17 169 7.92e-71 225
MS.gene032013.t1 AT3G04060 63.855 166 58 2 7 171 8 172 1.89e-70 223
MS.gene032013.t1 AT3G18400 52.451 204 84 2 19 213 5 204 1.42e-68 218
MS.gene032013.t1 AT2G24430 61.176 170 60 2 9 176 6 171 2.20e-68 217
MS.gene032013.t1 AT2G24430 61.176 170 60 2 9 176 6 171 2.20e-68 217
MS.gene032013.t1 AT3G15170 63.580 162 55 3 11 170 13 172 1.43e-66 213
MS.gene032013.t1 AT1G76420 62.338 154 52 2 19 170 22 171 1.13e-65 211
MS.gene032013.t1 AT5G61430 42.904 303 124 12 67 350 1 273 7.31e-64 204
MS.gene032013.t1 AT3G12977 37.597 258 148 5 19 275 18 263 6.61e-59 192
MS.gene032013.t1 AT1G56010 36.982 338 180 10 1 321 1 322 8.38e-59 193
MS.gene032013.t1 AT2G46770 47.541 183 83 2 14 183 11 193 7.92e-55 184
MS.gene032013.t1 AT4G10350 57.233 159 62 2 20 175 10 165 1.18e-54 182
MS.gene032013.t1 AT1G12260 54.545 154 62 2 20 170 8 156 1.83e-53 179
MS.gene032013.t1 AT4G35580 48.649 185 89 3 19 200 9 190 3.10e-53 183
MS.gene032013.t1 AT1G12260 54.545 154 62 2 20 170 8 156 3.22e-53 180
MS.gene032013.t1 AT3G61910 46.231 199 91 5 14 199 6 201 3.37e-53 179
MS.gene032013.t1 AT4G35580 48.649 185 89 3 19 200 9 190 4.89e-53 183
MS.gene032013.t1 AT4G35580 48.649 185 89 3 19 200 9 190 5.19e-53 183
MS.gene032013.t1 AT1G33280 55.346 159 62 3 20 175 9 161 7.24e-53 177
MS.gene032013.t1 AT1G62700 53.459 159 60 3 18 170 6 156 9.05e-53 179
MS.gene032013.t1 AT1G62700 53.459 159 60 3 18 170 6 156 9.05e-53 179
MS.gene032013.t1 AT1G33060 53.459 159 67 3 19 173 24 179 2.12e-52 183
MS.gene032013.t1 AT1G33060 53.459 159 67 3 19 173 24 179 2.55e-52 183
MS.gene032013.t1 AT4G27410 51.899 158 67 3 16 170 11 162 8.40e-52 174
MS.gene032013.t1 AT1G32770 38.909 275 137 7 14 261 11 281 1.57e-51 175
MS.gene032013.t1 AT5G08790 39.286 252 136 7 16 254 4 251 1.70e-51 172
MS.gene032013.t1 AT1G77450 50.000 154 76 1 17 170 8 160 2.83e-51 171
MS.gene032013.t1 AT5G66300 51.613 155 68 2 19 170 12 162 7.83e-51 171
MS.gene032013.t1 AT1G01720 41.262 206 117 3 14 216 2 206 9.53e-51 171
MS.gene032013.t1 AT3G04070 46.701 197 94 4 13 200 4 198 1.42e-50 172
MS.gene032013.t1 AT5G62380 52.903 155 65 3 19 170 7 156 2.24e-50 172
MS.gene032013.t1 AT5G62380 52.903 155 65 3 19 170 7 156 2.24e-50 172
MS.gene032013.t1 AT3G03200 45.411 207 107 3 17 220 4 207 3.18e-50 174
MS.gene032013.t1 AT3G15500 49.689 161 78 2 16 176 11 168 5.13e-50 170
MS.gene032013.t1 AT1G65910 46.196 184 92 3 17 198 4 182 6.17e-50 176
MS.gene032013.t1 AT2G18060 49.091 165 74 3 15 175 5 163 7.20e-50 171
MS.gene032013.t1 AT2G18060 49.091 165 74 3 15 175 5 163 7.20e-50 171
MS.gene032013.t1 AT3G17730 48.214 168 82 2 17 182 4 168 1.07e-49 167
MS.gene032013.t1 AT4G36160 50.311 161 70 3 14 170 5 159 1.09e-49 171
MS.gene032013.t1 AT4G36160 50.311 161 70 3 14 170 5 159 1.09e-49 171
MS.gene032013.t1 AT5G63790 51.515 165 70 4 11 170 43 202 1.09e-49 169
MS.gene032013.t1 AT4G36160 50.311 161 70 3 14 170 9 163 1.13e-49 171
MS.gene032013.t1 AT1G52890 50.311 161 77 2 16 176 11 168 1.16e-49 169
MS.gene032013.t1 AT1G71930 49.677 155 70 3 19 170 9 158 1.39e-49 169
MS.gene032013.t1 AT1G71930 49.677 155 70 3 19 170 9 158 1.39e-49 169
MS.gene032013.t1 AT5G63790 50.292 171 75 4 11 176 53 218 1.41e-49 169
MS.gene032013.t1 AT5G17260 53.503 157 67 3 17 170 4 157 4.98e-49 171
MS.gene032013.t1 AT1G61110 45.902 183 79 3 5 172 2 179 5.18e-49 167
MS.gene032013.t1 AT5G24590 40.000 255 119 10 19 265 13 241 6.11e-49 171
MS.gene032013.t1 AT1G69490 50.617 162 77 2 19 178 9 169 1.07e-48 165
MS.gene032013.t1 AT2G33480 52.229 157 63 3 17 170 13 160 1.56e-48 164
MS.gene032013.t1 AT3G04070 42.254 213 96 4 13 200 4 214 3.98e-48 166
MS.gene032013.t1 AT2G33480 52.229 157 61 3 17 170 13 158 7.87e-48 162
MS.gene032013.t1 AT1G54330 52.229 157 67 2 17 171 4 154 1.15e-47 163
MS.gene032013.t1 AT5G04410 49.390 164 77 3 22 183 12 171 1.18e-47 169
MS.gene032013.t1 AT4G27410 46.857 175 67 4 16 170 11 179 1.69e-47 163
MS.gene032013.t1 AT3G10500 48.193 166 76 4 22 183 12 171 1.84e-47 169
MS.gene032013.t1 AT4G28530 45.029 171 69 3 18 170 9 172 1.87e-47 164
MS.gene032013.t1 AT3G10480 51.190 168 72 4 22 185 30 191 1.97e-47 166
MS.gene032013.t1 AT1G79580 51.829 164 63 6 16 172 14 168 2.85e-47 164
MS.gene032013.t1 AT1G79580 51.829 164 63 6 16 172 14 168 2.85e-47 164
MS.gene032013.t1 AT1G79580 51.829 164 63 6 16 172 14 168 2.85e-47 164
MS.gene032013.t1 AT1G79580 51.829 164 63 6 16 172 14 168 2.85e-47 164
MS.gene032013.t1 AT1G79580 51.829 164 63 6 16 172 14 168 2.85e-47 164
MS.gene032013.t1 AT3G15510 45.562 169 82 2 23 181 21 189 3.36e-47 164
MS.gene032013.t1 AT3G49530 46.784 171 81 4 4 171 2 165 3.73e-47 165
MS.gene032013.t1 AT1G26870 46.703 182 82 5 1 172 1 177 5.11e-47 164
MS.gene032013.t1 AT5G13180 47.305 167 79 3 12 176 7 166 6.81e-47 160
MS.gene032013.t1 AT3G10480 50.888 169 72 4 22 185 30 192 7.11e-47 165
MS.gene032013.t1 AT3G49530 46.784 171 81 4 4 171 2 165 8.66e-47 165
MS.gene032013.t1 AT3G10490 49.112 169 75 4 22 185 30 192 2.11e-46 158
MS.gene032013.t1 AT2G27300 55.039 129 56 2 19 146 15 142 2.39e-45 158
MS.gene032013.t1 AT3G10490 49.112 169 75 4 22 185 30 192 3.50e-45 160
MS.gene032013.t1 AT5G46590 48.387 155 75 3 19 170 6 158 5.63e-45 156
MS.gene032013.t1 AT5G46590 52.273 132 60 2 19 147 6 137 1.48e-44 154
MS.gene032013.t1 AT2G43000 33.929 280 150 8 1 279 1 246 2.71e-44 154
MS.gene032013.t1 AT5G09330 43.529 170 90 3 16 183 3 168 8.30e-44 157
MS.gene032013.t1 AT5G09330 43.529 170 90 3 16 183 3 168 8.30e-44 157
MS.gene032013.t1 AT5G09330 43.529 170 90 3 16 183 3 168 8.30e-44 157
MS.gene032013.t1 AT5G09330 43.529 170 90 3 16 183 3 168 8.30e-44 157
MS.gene032013.t1 AT5G09330 43.529 170 90 3 16 183 3 168 8.30e-44 157
MS.gene032013.t1 AT5G64060 42.941 170 91 3 16 183 3 168 2.74e-43 153
MS.gene032013.t1 AT5G39820 43.575 179 80 4 15 173 17 194 3.95e-43 152
MS.gene032013.t1 AT4G17980 46.497 157 79 3 19 171 6 161 7.11e-42 147
MS.gene032013.t1 AT4G17980 47.134 157 76 4 19 170 6 160 1.08e-41 147
MS.gene032013.t1 AT3G10480 44.059 202 69 5 22 185 30 225 2.74e-41 151
MS.gene032013.t1 AT2G02450 46.667 150 74 2 22 170 54 198 3.13e-41 148
MS.gene032013.t1 AT1G52880 46.541 159 76 2 23 172 21 179 3.38e-41 147
MS.gene032013.t1 AT2G02450 46.667 150 74 2 22 170 54 198 4.51e-41 149
MS.gene032013.t1 AT1G34190 45.562 169 85 4 18 183 14 178 2.25e-40 149
MS.gene032013.t1 AT1G34180 44.970 169 86 4 18 183 14 178 4.58e-40 147
MS.gene032013.t1 AT5G22290 48.201 139 69 3 12 149 16 152 9.02e-40 144
MS.gene032013.t1 AT3G44290 49.242 132 65 2 19 149 15 145 9.77e-40 140
MS.gene032013.t1 AT1G32510 44.444 162 79 3 19 171 6 165 1.21e-39 142
MS.gene032013.t1 AT1G34180 45.614 171 82 5 18 183 14 178 1.58e-39 147
MS.gene032013.t1 AT3G12977 36.620 213 122 5 64 275 10 210 4.77e-39 138
MS.gene032013.t1 AT3G44290 49.242 132 65 2 19 149 15 145 1.11e-38 140
MS.gene032013.t1 AT1G34180 41.436 181 87 4 18 183 14 190 6.64e-38 141
MS.gene032013.t1 AT2G17040 41.212 165 85 3 17 178 5 160 1.03e-37 136
MS.gene032013.t1 AT1G34180 42.077 183 83 5 18 183 14 190 2.00e-37 141
MS.gene032013.t1 AT1G56010 37.269 271 138 10 67 321 1 255 3.43e-37 134
MS.gene032013.t1 AT3G12910 41.573 178 88 6 13 176 16 191 2.54e-36 133
MS.gene032013.t1 AT4G10350 57.391 115 43 2 64 175 7 118 5.37e-35 130
MS.gene032013.t1 AT1G32870 45.833 168 77 5 22 183 13 172 5.39e-35 134
MS.gene032013.t1 AT1G32870 45.833 168 77 5 22 183 13 172 6.00e-35 134
MS.gene032013.t1 AT1G32870 45.833 168 77 5 22 183 49 208 7.64e-35 134
MS.gene032013.t1 AT5G04395 44.828 145 64 2 19 147 28 172 1.43e-33 123
MS.gene032013.t1 AT2G33480 55.882 102 36 2 72 170 8 103 1.20e-31 119
MS.gene032013.t1 AT4G28530 42.424 132 58 2 18 131 9 140 3.26e-29 115
MS.gene032013.t1 AT5G22380 36.723 177 100 6 22 189 8 181 1.65e-28 111
MS.gene032013.t1 AT4G01550 45.926 135 67 4 17 145 2 136 6.20e-28 114
MS.gene032013.t1 AT1G02230 41.611 149 75 7 20 161 4 147 1.46e-26 108
MS.gene032013.t1 AT4G01520 41.912 136 72 5 17 145 2 137 2.05e-26 107
MS.gene032013.t1 AT3G04420 41.732 127 70 2 20 142 4 130 2.53e-26 106
MS.gene032013.t1 AT3G04420 41.732 127 70 2 20 142 4 130 6.04e-26 106
MS.gene032013.t1 AT4G01540 43.939 132 65 6 22 145 7 137 1.28e-25 106
MS.gene032013.t1 AT4G01540 43.939 132 65 6 22 145 7 137 1.93e-25 106
MS.gene032013.t1 AT3G44350 33.871 186 111 5 21 198 7 188 2.43e-25 102
MS.gene032013.t1 AT4G01540 43.939 132 65 6 22 145 7 137 2.70e-25 105
MS.gene032013.t1 AT4G01540 43.939 132 65 6 22 145 7 137 3.32e-25 106
MS.gene032013.t1 AT3G44350 40.310 129 71 3 21 143 7 135 1.18e-24 98.6
MS.gene032013.t1 AT3G10490 53.608 97 36 3 92 185 2 92 3.34e-24 102
MS.gene032013.t1 AT3G10490 53.608 97 36 3 92 185 2 92 3.34e-24 102
MS.gene032013.t1 AT1G02250 31.481 216 116 8 20 222 4 200 6.13e-23 98.6
MS.gene032013.t1 AT1G02220 39.370 127 70 3 20 142 4 127 1.07e-22 98.2
MS.gene032013.t1 AT2G18060 52.500 80 31 2 97 175 2 75 2.29e-20 90.1
MS.gene032013.t1 AT1G01010 36.986 146 72 6 21 152 5 144 8.68e-20 90.5
MS.gene032013.t1 AT5G64530 31.214 173 93 5 19 178 3 162 1.67e-19 85.5
MS.gene032013.t1 AT2G43000 31.343 201 104 7 80 279 1 168 2.08e-19 85.5
MS.gene032013.t1 AT5G14000 32.778 180 104 4 14 191 10 174 5.50e-19 84.7
MS.gene032013.t1 AT5G64530 36.154 130 67 5 19 145 3 119 8.97e-19 82.8
MS.gene032013.t1 AT5G14000 35.556 135 83 2 14 146 10 142 1.80e-18 81.6
MS.gene032013.t1 AT5G50820 33.813 139 76 5 12 144 10 138 1.11e-16 77.8
MS.gene032013.t1 AT3G56530 33.588 131 84 2 15 142 48 178 3.00e-16 79.0
MS.gene032013.t1 AT5G22290 57.692 52 22 0 98 149 2 53 5.43e-16 77.0
MS.gene032013.t1 AT3G04430 37.121 132 69 4 25 143 6 136 1.14e-15 75.1
MS.gene032013.t1 AT3G55210 32.143 140 81 3 19 144 11 150 8.13e-14 71.2
MS.gene032013.t1 AT4G29230 32.402 179 83 9 17 168 46 213 2.46e-13 71.2
MS.gene032013.t1 AT4G29230 32.402 179 83 9 17 168 45 212 2.62e-13 71.2
MS.gene032013.t1 AT4G29230 32.402 179 83 9 17 168 46 213 6.24e-13 69.7
MS.gene032013.t1 AT5G56620 33.951 162 71 7 17 147 41 197 1.52e-12 68.6
MS.gene032013.t1 AT5G56620 33.951 162 71 7 17 147 41 197 1.52e-12 68.6
MS.gene032013.t1 AT5G56620 33.951 162 71 7 17 147 41 197 1.96e-12 68.2
MS.gene032013.t1 AT5G14490 32.192 146 77 5 19 145 55 197 1.63e-11 65.1
MS.gene032013.t1 AT5G14490 32.192 146 77 5 19 145 58 200 1.65e-11 65.1
MS.gene032013.t1 AT5G14490 32.192 146 77 5 19 145 58 200 2.24e-11 64.7
MS.gene032013.t1 AT5G14490 31.250 144 81 4 19 145 55 197 3.97e-11 63.5

Find 75 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGGGAAATGCATTAAT+TGG 0.121823 3.1:-57413316 MS.gene032013:CDS
TTATTCAGAGCTGGCTAAAA+TGG 0.240651 3.1:-57413455 MS.gene032013:intron
AAATGAAAAGGTCAAATTTC+CGG 0.296027 3.1:-57414452 MS.gene032013:CDS
GGATAATTGTGGAAAGAAAA+TGG 0.302070 3.1:-57412532 MS.gene032013:CDS
AGAGATTCATTAGTATTTGA+TGG 0.305472 3.1:+57412468 None:intergenic
TTTGGTTTATCTATTTGATT+TGG 0.307785 3.1:+57412384 None:intergenic
GATATCTCATCTGTGGTATA+TGG 0.312060 3.1:-57412099 MS.gene032013:CDS
AAAACTCTTGGTTTAGGCTT+TGG 0.320721 3.1:+57412145 None:intergenic
CAAAAGAAAACTCTTGGTTT+AGG 0.327229 3.1:+57412139 None:intergenic
TAGTAGCTCTATTGGTCCTT+TGG 0.349158 3.1:+57413380 None:intergenic
TTCATCCTCTTCAAAACAAA+TGG 0.371961 3.1:-57412310 MS.gene032013:CDS
TATTGGTCCTTTGGCCAGTT+GGG 0.376646 3.1:+57413389 None:intergenic
GGCATGTTTCAAAGGTGGTC+TGG 0.377514 3.1:-57412072 MS.gene032013:CDS
CAAGAATTGTCATCAGCTTC+AGG 0.379981 3.1:-57412045 MS.gene032013:CDS
CTAAAATGGGAGAAACAAAA+TGG 0.380978 3.1:-57413441 MS.gene032013:CDS
GAGCTACTAATGCTGGCTAT+TGG 0.387868 3.1:-57413366 MS.gene032013:CDS
GCCAGCATTAGTAGCTCTAT+TGG 0.388516 3.1:+57413372 None:intergenic
TTGGTTTAGGCTTTGGTTTG+AGG 0.390632 3.1:+57412152 None:intergenic
AATTCCCGACCCTTGAGGTT+TGG 0.393648 3.1:+57412247 None:intergenic
AGAAATCATAAAGAGTGGTT+TGG 0.419283 3.1:+57412421 None:intergenic
TCAAGGGAAATGCATTAATT+GGG 0.420828 3.1:-57413315 MS.gene032013:CDS
GCAGTTATTACTTCAGCTAA+AGG 0.433317 3.1:+57412279 None:intergenic
CTCTCCCAAAAGAAAACTCT+TGG 0.435959 3.1:+57412133 None:intergenic
TCATCTGTGGTATATGGAAA+TGG 0.441427 3.1:-57412093 MS.gene032013:CDS
CTATTGGTCCTTTGGCCAGT+TGG 0.450132 3.1:+57413388 None:intergenic
GCATGTTTCAAAGGTGGTCT+GGG 0.461659 3.1:-57412071 MS.gene032013:CDS
GTATTCATGCATGACCCAAT+TGG 0.462426 3.1:+57413240 None:intergenic
TATTCAGAGCTGGCTAAAAT+GGG 0.463612 3.1:-57413454 MS.gene032013:intron
AAATCAATACCTTGTCAAGA+AGG 0.466786 3.1:-57414392 MS.gene032013:CDS
GCTGGCTATTGGAAAGCAAC+AGG 0.467708 3.1:-57413355 MS.gene032013:CDS
ACCAATAGAGCTACTAATGC+TGG 0.495849 3.1:-57413373 MS.gene032013:CDS
TTGATTTATAAGCTCTTCAT+CGG 0.497039 3.1:+57414408 None:intergenic
TGAACCAAACCTCAAGGGTC+GGG 0.503759 3.1:-57412251 MS.gene032013:CDS
TTAGCTGAAGTAATAACTGC+TGG 0.510536 3.1:-57412276 MS.gene032013:CDS
AGGGAGAGAAAATACCCAAC+TGG 0.520226 3.1:-57413403 MS.gene032013:CDS
TTACCATTCCATGTGTGGAT+AGG 0.526862 3.1:+57413185 None:intergenic
GTTTAGGCTTTGGTTTGAGG+TGG 0.531634 3.1:+57412155 None:intergenic
CAGTTGGAGAATGAGAATCT+TGG 0.538735 3.1:-57412180 MS.gene032013:CDS
ATGGAAATGGCATGTTTCAA+AGG 0.539060 3.1:-57412080 MS.gene032013:CDS
TTTATAAGCTCTTCATCGGT+CGG 0.540210 3.1:+57414412 None:intergenic
GAAAAGGTCAAATTTCCGGC+TGG 0.542041 3.1:-57414448 MS.gene032013:CDS
ATGCATGAATACCGATTGGC+GGG 0.543086 3.1:-57413229 MS.gene032013:CDS
CAACCTATCCACACATGGAA+TGG 0.547037 3.1:-57413188 MS.gene032013:intron
GTCTTTAAGAAGGATAATTG+TGG 0.552416 3.1:-57412543 MS.gene032013:CDS
ATCACTGTTGAGGATGCAGT+TGG 0.553870 3.1:-57412196 MS.gene032013:CDS
TTGAACCAAACCTCAAGGGT+CGG 0.563410 3.1:-57412252 MS.gene032013:CDS
AATTGTGGAAAGAAAATGGA+TGG 0.567327 3.1:-57412528 MS.gene032013:CDS
CAATATTACCATTCCATGTG+TGG 0.569497 3.1:+57413180 None:intergenic
AAAATGGATGGTTCAAAACA+TGG 0.570089 3.1:-57412516 MS.gene032013:CDS
CTGGCTTGAACCAAACCTCA+AGG 0.571166 3.1:-57412257 MS.gene032013:CDS
AGAGTGTGTTACCCGCCAAT+CGG 0.575771 3.1:+57413218 None:intergenic
CTCAAGAACAATCACTGTTG+AGG 0.576259 3.1:-57412206 MS.gene032013:CDS
TCTCAGTAGAGTCTTTAAGA+AGG 0.576793 3.1:-57412553 MS.gene032013:CDS
TATGAATAAGTGTGAACCAT+GGG 0.577620 3.1:-57414326 MS.gene032013:CDS
TGGATGGTTCAAAACATGGA+AGG 0.583286 3.1:-57412512 MS.gene032013:CDS
ATTTGATGGTCCTTCTCTAG+AGG 0.592265 3.1:+57412482 None:intergenic
TGACGAATTCCCGACCCTTG+AGG 0.592852 3.1:+57412242 None:intergenic
AATTCACCTGGCAAATCCCA+TGG 0.596462 3.1:+57414310 None:intergenic
CATGCATGAATACCGATTGG+CGG 0.600090 3.1:-57413230 MS.gene032013:CDS
ATTAGAGAAATCATAAAGAG+TGG 0.600526 3.1:+57412416 None:intergenic
AGGTTTAACTCCTCTAGAGA+AGG 0.606008 3.1:-57412492 MS.gene032013:CDS
TGTCATCAACCTTCTTGACA+AGG 0.607463 3.1:+57414383 None:intergenic
GTCATCAGCTTCAGGACATG+TGG 0.608647 3.1:-57412037 MS.gene032013:CDS
GGTCATGCATGAATACCGAT+TGG 0.609797 3.1:-57413233 MS.gene032013:CDS
TGGCTTGAACCAAACCTCAA+GGG 0.615211 3.1:-57412256 MS.gene032013:CDS
TGTGAACCATGGGATTTGCC+AGG 0.615720 3.1:-57414316 MS.gene032013:intron
CTTCAGCAATATCTATAGCA+CGG 0.632290 3.1:+57414353 None:intergenic
GGAGAGAATCGATAACCAGC+CGG 0.632530 3.1:+57414433 None:intergenic
ATATGAATAAGTGTGAACCA+TGG 0.635343 3.1:-57414327 MS.gene032013:CDS
GAAAATACCCAACTGGCCAA+AGG 0.637584 3.1:-57413396 MS.gene032013:CDS
ATGTGGTCAATGATAGCTTG+TGG 0.641641 3.1:-57412020 MS.gene032013:CDS
GAAATGGCATGTTTCAAAGG+TGG 0.654634 3.1:-57412077 MS.gene032013:CDS
TGATGCTGATATCTCATCTG+TGG 0.688150 3.1:-57412106 MS.gene032013:CDS
GAGCACAACCTATCCACACA+TGG 0.690253 3.1:-57413193 MS.gene032013:CDS
TACAAAGGAAGAGCGCCGAG+TGG 0.721558 3.1:-57413271 MS.gene032013:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTACTTTATTTAGAAAA+AGG + chr3.1:57413642-57413661 None:intergenic 10.0%
!!! TAAAATTTTTGTCAAAATTA+CGG + chr3.1:57413460-57413479 None:intergenic 10.0%
!! AAAATAAAATAAAAACTCCA+AGG + chr3.1:57412284-57412303 None:intergenic 15.0%
!! AAATAGAAAGAAAAACAATT+TGG - chr3.1:57412674-57412693 MS.gene032013:intron 15.0%
!! ATTATATTATATTAGTAGTC+TGG - chr3.1:57412243-57412262 MS.gene032013:CDS 15.0%
!! TAAAGACATTAAAAACTAAA+GGG - chr3.1:57412350-57412369 MS.gene032013:CDS 15.0%
!! TCACTCTATAAAAAAAAAAA+AGG + chr3.1:57413922-57413941 None:intergenic 15.0%
!! TTAAAGACATTAAAAACTAA+AGG - chr3.1:57412349-57412368 MS.gene032013:CDS 15.0%
!!! AATTGTTTTTCTTTCTATTT+TGG + chr3.1:57412674-57412693 None:intergenic 15.0%
!!! AGTGATTTTGATTTTTTTTT+AGG - chr3.1:57413576-57413595 MS.gene032013:intron 15.0%
!!! GTGATTTTGATTTTTTTTTA+GGG - chr3.1:57413577-57413596 MS.gene032013:intron 15.0%
!!! TTTTTTTTTATAGAGTGAAT+GGG - chr3.1:57413924-57413943 MS.gene032013:intron 15.0%
!!! TTTTTTTTTTATAGAGTGAA+TGG - chr3.1:57413923-57413942 MS.gene032013:intron 15.0%
!! AAAAAAACAATAAATTCACC+TGG + chr3.1:57412206-57412225 None:intergenic 20.0%
!! AAAGACATTAAAAACTAAAG+GGG - chr3.1:57412351-57412370 MS.gene032013:CDS 20.0%
!! GAATGTTTACAATCAAAAAA+TGG - chr3.1:57412025-57412044 MS.gene032013:CDS 20.0%
!! TCAAAAAATGGAAAATGAAA+AGG - chr3.1:57412037-57412056 MS.gene032013:CDS 20.0%
!!! ACTTATGCTTTCTTATTTTT+TGG - chr3.1:57413022-57413041 MS.gene032013:intron 20.0%
!!! TTTGGTTTATCTATTTGATT+TGG + chr3.1:57414120-57414139 None:intergenic 20.0%
!!! TTTTAAAGTTATTATGAGTG+CGG - chr3.1:57412947-57412966 MS.gene032013:intron 20.0%
! AAATGAAAAGGTCAAATTTC+CGG - chr3.1:57412049-57412068 MS.gene032013:CDS 25.0%
! AATTGGGATGAAAAAAACAT+TGG - chr3.1:57413202-57413221 MS.gene032013:CDS 25.0%
! AGAGATTCATTAGTATTTGA+TGG + chr3.1:57414036-57414055 None:intergenic 25.0%
! ATTAGAGAAATCATAAAGAG+TGG + chr3.1:57414088-57414107 None:intergenic 25.0%
! CAAAGAAGACTTAATTTATG+TGG - chr3.1:57412633-57412652 MS.gene032013:intron 25.0%
! CACATAAATTAAGTCTTCTT+TGG + chr3.1:57412635-57412654 None:intergenic 25.0%
! GAAAGAAAAACAATTTGGAA+TGG - chr3.1:57412679-57412698 MS.gene032013:intron 25.0%
! TAAATTAAGTCTTCTTTGGT+AGG + chr3.1:57412631-57412650 None:intergenic 25.0%
! TAAGTTTGACAATAATGACA+CGG + chr3.1:57413505-57413524 None:intergenic 25.0%
! TCTAATGTATGTATGTCTTT+CGG - chr3.1:57412986-57413005 MS.gene032013:intron 25.0%
! TTGATTTATAAGCTCTTCAT+CGG + chr3.1:57412096-57412115 None:intergenic 25.0%
!! AAAGACAAAGAGATTTTCAA+GGG - chr3.1:57413170-57413189 MS.gene032013:intron 25.0%
!! TAAACCAAGAGTTTTCTTTT+GGG - chr3.1:57414364-57414383 MS.gene032013:CDS 25.0%
!!! AAAACATTGGTTTTCTACAA+AGG - chr3.1:57413215-57413234 MS.gene032013:CDS 25.0%
AAAATGGATGGTTCAAAACA+TGG - chr3.1:57413985-57414004 MS.gene032013:intron 30.0%
AAATCAATACCTTGTCAAGA+AGG - chr3.1:57412109-57412128 MS.gene032013:CDS 30.0%
AATTGTGGAAAGAAAATGGA+TGG - chr3.1:57413973-57413992 MS.gene032013:intron 30.0%
AGAAATCATAAAGAGTGGTT+TGG + chr3.1:57414083-57414102 None:intergenic 30.0%
AGATAACGACAATATCTCTA+AGG + chr3.1:57412820-57412839 None:intergenic 30.0%
AGGTAATTCTATCAAACACA+TGG + chr3.1:57413430-57413449 None:intergenic 30.0%
ATATGAATAAGTGTGAACCA+TGG - chr3.1:57412174-57412193 MS.gene032013:CDS 30.0%
ATGCAGTGTTTATTTGATTC+AGG + chr3.1:57412524-57412543 None:intergenic 30.0%
CAAAAGAAAACTCTTGGTTT+AGG + chr3.1:57414365-57414384 None:intergenic 30.0%
CTAAAATGGGAGAAACAAAA+TGG - chr3.1:57413060-57413079 MS.gene032013:intron 30.0%
CTAAGGTGTAATTAAACCAT+TGG + chr3.1:57412803-57412822 None:intergenic 30.0%
GGATAATTGTGGAAAGAAAA+TGG - chr3.1:57413969-57413988 MS.gene032013:intron 30.0%
TATGAATAAGTGTGAACCAT+GGG - chr3.1:57412175-57412194 MS.gene032013:CDS 30.0%
TCAAGGGAAATGCATTAATT+GGG - chr3.1:57413186-57413205 MS.gene032013:intron 30.0%
TTCAAGGGAAATGCATTAAT+TGG - chr3.1:57413185-57413204 MS.gene032013:intron 30.0%
TTCATCCTCTTCAAAACAAA+TGG - chr3.1:57414191-57414210 MS.gene032013:intron 30.0%
TTGTCGTTATCTTACTTTGA+TGG - chr3.1:57412828-57412847 MS.gene032013:intron 30.0%
! ATGTTGTCATCTTGTGTTTT+TGG + chr3.1:57414138-57414157 None:intergenic 30.0%
! CAAAGACAAAGAGATTTTCA+AGG - chr3.1:57413169-57413188 MS.gene032013:intron 30.0%
! CTAAACCAAGAGTTTTCTTT+TGG - chr3.1:57414363-57414382 MS.gene032013:CDS 30.0%
! GTCTTTAAGAAGGATAATTG+TGG - chr3.1:57413958-57413977 MS.gene032013:intron 30.0%
!! ACAACTTTTAGAGAAACTAC+TGG - chr3.1:57413729-57413748 MS.gene032013:intron 30.0%
!!! AACATCCATTTGTTTTGAAG+AGG + chr3.1:57414199-57414218 None:intergenic 30.0%
!!! AATGGTATTTTTTCTGTGTG+AGG - chr3.1:57413078-57413097 MS.gene032013:intron 30.0%
!!! ATGGTATTTTTTCTGTGTGA+GGG - chr3.1:57413079-57413098 MS.gene032013:intron 30.0%
!!! GTTTGGTTTTCACTATTGTA+TGG + chr3.1:57414066-57414085 None:intergenic 30.0%
!!! TTTTTTGGTTTATTCAGAGC+TGG - chr3.1:57413037-57413056 MS.gene032013:intron 30.0%
AAAACTCTTGGTTTAGGCTT+TGG + chr3.1:57414359-57414378 None:intergenic 35.0%
ATGGAAATGGCATGTTTCAA+AGG - chr3.1:57414421-57414440 MS.gene032013:CDS 35.0%
CAAACAATGTCGTACTAAGA+CGG - chr3.1:57412591-57412610 MS.gene032013:intron 35.0%
CAACACGACACTAATAAATG+TGG - chr3.1:57412904-57412923 MS.gene032013:intron 35.0%
CAATATTACCATTCCATGTG+TGG + chr3.1:57413324-57413343 None:intergenic 35.0%
CACATTTATTAGTGTCGTGT+TGG + chr3.1:57412906-57412925 None:intergenic 35.0%
CCAGATCTAATCAATGACTT+TGG + chr3.1:57412477-57412496 None:intergenic 35.0%
CTTCAGCAATATCTATAGCA+CGG + chr3.1:57412151-57412170 None:intergenic 35.0%
GAGTGGTGAAAAAACCAATT+GGG - chr3.1:57413247-57413266 MS.gene032013:CDS 35.0%
GATATCTCATCTGTGGTATA+TGG - chr3.1:57414402-57414421 MS.gene032013:CDS 35.0%
GCAGTTATTACTTCAGCTAA+AGG + chr3.1:57414225-57414244 None:intergenic 35.0%
GTCAAAATTACGGTAACACA+AGG + chr3.1:57413450-57413469 None:intergenic 35.0%
TATTCAGAGCTGGCTAAAAT+GGG - chr3.1:57413047-57413066 MS.gene032013:intron 35.0%
TCATCTGTGGTATATGGAAA+TGG - chr3.1:57414408-57414427 MS.gene032013:CDS 35.0%
TGGTGGAAAAAGAAGAAAAG+TGG - chr3.1:57412748-57412767 MS.gene032013:intron 35.0%
TTAGCTGAAGTAATAACTGC+TGG - chr3.1:57414225-57414244 MS.gene032013:intron 35.0%
TTATTCAGAGCTGGCTAAAA+TGG - chr3.1:57413046-57413065 MS.gene032013:intron 35.0%
TTTATAAGCTCTTCATCGGT+CGG + chr3.1:57412092-57412111 None:intergenic 35.0%
! CCAAAGTCATTGATTAGATC+TGG - chr3.1:57412474-57412493 MS.gene032013:CDS 35.0%
! TCTCAGTAGAGTCTTTAAGA+AGG - chr3.1:57413948-57413967 MS.gene032013:intron 35.0%
! TGGTTTTCACTATTGTATGG+AGG + chr3.1:57414063-57414082 None:intergenic 35.0%
!! ACAATTTGGAATGGTGCTTT+TGG - chr3.1:57412688-57412707 MS.gene032013:intron 35.0%
!! CAATTTGGAATGGTGCTTTT+GGG - chr3.1:57412689-57412708 MS.gene032013:intron 35.0%
!!! CAATTGGTTTTTTCACCACT+CGG + chr3.1:57413248-57413267 None:intergenic 35.0%
ACAGATCCTCGATGAATGTT+TGG + chr3.1:57413536-57413555 None:intergenic 40.0%
ACCAATAGAGCTACTAATGC+TGG - chr3.1:57413128-57413147 MS.gene032013:intron 40.0%
ATGTGGTCAATGATAGCTTG+TGG - chr3.1:57414481-57414500 MS.gene032013:CDS 40.0%
CAAGAATTGTCATCAGCTTC+AGG - chr3.1:57414456-57414475 MS.gene032013:CDS 40.0%
CAGTTGGAGAATGAGAATCT+TGG - chr3.1:57414321-57414340 MS.gene032013:CDS 40.0%
CGAGTGGTGAAAAAACCAAT+TGG - chr3.1:57413246-57413265 MS.gene032013:CDS 40.0%
CTCAAGAACAATCACTGTTG+AGG - chr3.1:57414295-57414314 MS.gene032013:intron 40.0%
CTCTCCCAAAAGAAAACTCT+TGG + chr3.1:57414371-57414390 None:intergenic 40.0%
GAAATGGCATGTTTCAAAGG+TGG - chr3.1:57414424-57414443 MS.gene032013:CDS 40.0%
GTATTCATGCATGACCCAAT+TGG + chr3.1:57413264-57413283 None:intergenic 40.0%
TAACCCTAAAACACCCTCAT+TGG - chr3.1:57412719-57412738 MS.gene032013:intron 40.0%
TGATGCTGATATCTCATCTG+TGG - chr3.1:57414395-57414414 MS.gene032013:CDS 40.0%
TGGATGGTTCAAAACATGGA+AGG - chr3.1:57413989-57414008 MS.gene032013:intron 40.0%
TGTCATCAACCTTCTTGACA+AGG + chr3.1:57412121-57412140 None:intergenic 40.0%
TGTTACAGATCTCTAGGCAT+CGG + chr3.1:57412448-57412467 None:intergenic 40.0%
TTACCATTCCATGTGTGGAT+AGG + chr3.1:57413319-57413338 None:intergenic 40.0%
TTATTAGTGTCGTGTTGGAG+CGG + chr3.1:57412901-57412920 None:intergenic 40.0%
! AAGAAAAGTGGTGACGACTA+GGG - chr3.1:57412760-57412779 MS.gene032013:intron 40.0%
! AGGTTTAACTCCTCTAGAGA+AGG - chr3.1:57414009-57414028 MS.gene032013:intron 40.0%
! ATTTGATGGTCCTTCTCTAG+AGG + chr3.1:57414022-57414041 None:intergenic 40.0%
! GTCATTGATTAGATCTGGAC+TGG - chr3.1:57412479-57412498 MS.gene032013:CDS 40.0%
! TAGTAGCTCTATTGGTCCTT+TGG + chr3.1:57413124-57413143 None:intergenic 40.0%
!! TTGGTTTAGGCTTTGGTTTG+AGG + chr3.1:57414352-57414371 None:intergenic 40.0%
!!! CTACCAATGAGGGTGTTTTA+GGG + chr3.1:57412725-57412744 None:intergenic 40.0%
!!! TCTACCAATGAGGGTGTTTT+AGG + chr3.1:57412726-57412745 None:intergenic 40.0%
AACACCCTCATTGGTAGATC+TGG - chr3.1:57412728-57412747 MS.gene032013:intron 45.0%
AATTCACCTGGCAAATCCCA+TGG + chr3.1:57412194-57412213 None:intergenic 45.0%
AGGGAGAGAAAATACCCAAC+TGG - chr3.1:57413098-57413117 MS.gene032013:intron 45.0%
ATCACTGTTGAGGATGCAGT+TGG - chr3.1:57414305-57414324 MS.gene032013:intron 45.0%
CAACCTATCCACACATGGAA+TGG - chr3.1:57413313-57413332 MS.gene032013:CDS 45.0%
CGTCGATGTTACAGATCTCT+AGG + chr3.1:57412454-57412473 None:intergenic 45.0%
CTATGTACCACCGACACATA+AGG - chr3.1:57412872-57412891 MS.gene032013:intron 45.0%
GAAAAGGTCAAATTTCCGGC+TGG - chr3.1:57412053-57412072 MS.gene032013:CDS 45.0%
GAAAATACCCAACTGGCCAA+AGG - chr3.1:57413105-57413124 MS.gene032013:intron 45.0%
GCATGTTTCAAAGGTGGTCT+GGG - chr3.1:57414430-57414449 MS.gene032013:CDS 45.0%
GGATTTGAAAAGCTACGCCT+TGG - chr3.1:57412264-57412283 MS.gene032013:CDS 45.0%
GGTCATGCATGAATACCGAT+TGG - chr3.1:57413268-57413287 MS.gene032013:CDS 45.0%
GTCGATCCAAACATTCATCG+AGG - chr3.1:57413527-57413546 MS.gene032013:intron 45.0%
TATTGGTCCTTTGGCCAGTT+GGG + chr3.1:57413115-57413134 None:intergenic 45.0%
TCCACCAGATCTACCAATGA+GGG + chr3.1:57412735-57412754 None:intergenic 45.0%
TGGCTTGAACCAAACCTCAA+GGG - chr3.1:57414245-57414264 MS.gene032013:intron 45.0%
TTCCACCAGATCTACCAATG+AGG + chr3.1:57412736-57412755 None:intergenic 45.0%
TTGAACCAAACCTCAAGGGT+CGG - chr3.1:57414249-57414268 MS.gene032013:intron 45.0%
! ATGCATGAATACCGATTGGC+GGG - chr3.1:57413272-57413291 MS.gene032013:CDS 45.0%
! CATGCATGAATACCGATTGG+CGG - chr3.1:57413271-57413290 MS.gene032013:CDS 45.0%
! GAAGAAAAGTGGTGACGACT+AGG - chr3.1:57412759-57412778 MS.gene032013:intron 45.0%
! GAGCTACTAATGCTGGCTAT+TGG - chr3.1:57413135-57413154 MS.gene032013:intron 45.0%
! GCCAGCATTAGTAGCTCTAT+TGG + chr3.1:57413132-57413151 None:intergenic 45.0%
!! GTTTAGGCTTTGGTTTGAGG+TGG + chr3.1:57414349-57414368 None:intergenic 45.0%
AATTCCCGACCCTTGAGGTT+TGG + chr3.1:57414257-57414276 None:intergenic 50.0%
ACCCTCATTGGTAGATCTGG+TGG - chr3.1:57412731-57412750 MS.gene032013:intron 50.0%
AGAGTGTGTTACCCGCCAAT+CGG + chr3.1:57413286-57413305 None:intergenic 50.0%
CTAGGGTTTGGCAAGGAGAA+AGG - chr3.1:57412777-57412796 MS.gene032013:intron 50.0%
CTATTGGTCCTTTGGCCAGT+TGG + chr3.1:57413116-57413135 None:intergenic 50.0%
GAGCACAACCTATCCACACA+TGG - chr3.1:57413308-57413327 MS.gene032013:CDS 50.0%
GCTGGCTATTGGAAAGCAAC+AGG - chr3.1:57413146-57413165 MS.gene032013:intron 50.0%
GGAGAGAATCGATAACCAGC+CGG + chr3.1:57412071-57412090 None:intergenic 50.0%
GGAGCGGTTACCTTATGTGT+CGG + chr3.1:57412885-57412904 None:intergenic 50.0%
GGCATGTTTCAAAGGTGGTC+TGG - chr3.1:57414429-57414448 MS.gene032013:CDS 50.0%
GTCATCAGCTTCAGGACATG+TGG - chr3.1:57414464-57414483 MS.gene032013:CDS 50.0%
TGAACCAAACCTCAAGGGTC+GGG - chr3.1:57414250-57414269 MS.gene032013:intron 50.0%
TGTGAACCATGGGATTTGCC+AGG - chr3.1:57412185-57412204 MS.gene032013:CDS 50.0%
TTGGCAAGGAGAAAGGCCAA+TGG - chr3.1:57412784-57412803 MS.gene032013:intron 50.0%
! AAGTGGTGACGACTAGGGTT+TGG - chr3.1:57412765-57412784 MS.gene032013:intron 50.0%
! CTGGCTTGAACCAAACCTCA+AGG - chr3.1:57414244-57414263 MS.gene032013:intron 50.0%
GCGGTTACCTTATGTGTCGG+TGG + chr3.1:57412882-57412901 None:intergenic 55.0%
GTGACGACTAGGGTTTGGCA+AGG - chr3.1:57412770-57412789 MS.gene032013:intron 55.0%
TGACGAATTCCCGACCCTTG+AGG + chr3.1:57414262-57414281 None:intergenic 55.0%
!! TACAAAGGAAGAGCGCCGAG+TGG - chr3.1:57413230-57413249 MS.gene032013:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 57412011 57414512 57412011 ID=MS.gene032013
chr3.1 mRNA 57412011 57414512 57412011 ID=MS.gene032013.t1;Parent=MS.gene032013
chr3.1 exon 57414317 57414512 57414317 ID=MS.gene032013.t1.exon1;Parent=MS.gene032013.t1
chr3.1 CDS 57414317 57414512 57414317 ID=cds.MS.gene032013.t1;Parent=MS.gene032013.t1
chr3.1 exon 57413189 57413469 57413189 ID=MS.gene032013.t1.exon2;Parent=MS.gene032013.t1
chr3.1 CDS 57413189 57413469 57413189 ID=cds.MS.gene032013.t1;Parent=MS.gene032013.t1
chr3.1 exon 57412011 57412586 57412011 ID=MS.gene032013.t1.exon3;Parent=MS.gene032013.t1
chr3.1 CDS 57412011 57412586 57412011 ID=cds.MS.gene032013.t1;Parent=MS.gene032013.t1
Gene Sequence

>MS.gene032013

ATGGGATCAAATGAGAATGTTTACAATCAAAAAATGGAAAATGAAAAGGTCAAATTTCCGGCTGGTTATCGATTCTCTCCGACCGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAATTTCCGTGCTATAGATATTGCTGAAGTCGATATGAATAAGTGTGAACCATGGGATTTGCCAGGTGAATTTATTGTTTTTTTATAAGTAAATATTAGTTATTATATTATATTAGTAGTCTGGATTTGAAAAGCTACGCCTTGGAGTTTTTATTTTATTTTATTTTAAAATAAACGATGTTGATAGAACATTTATAACACATACATTTAAAGACATTAAAAACTAAAGGGGTGATGCATTTGCGAAAAGAACAGCAAAATACAAAAGTCTACAAATATGAATACATTCAAGTGTAAAAAAAACCGATGCCTAGAGATCTGTAACATCGACGCCAAAGTCATTGATTAGATCTGGACTGGATCAAAGCTAATCTTTCAACCTGAATCAAATAAACACTGCATTAAGATGAAAAATCAAGAAAACACTATTCAAGAACGAGAAATCATAACAAACAATGTCGTACTAAGACGGTGAAATCATAAAAACCTACCAAAGAAGACTTAATTTATGTGGAAATCACTTATATAACCAAAATAGAAAGAAAAACAATTTGGAATGGTGCTTTTGGGACAAAATTAACCCTAAAACACCCTCATTGGTAGATCTGGTGGAAAAAGAAGAAAAGTGGTGACGACTAGGGTTTGGCAAGGAGAAAGGCCAATGGTTTAATTACACCTTAGAGATATTGTCGTTATCTTACTTTGATGGTTATATATTTTCTCTTAATTACTATGTACCACCGACACATAAGGTAACCGCTCCAACACGACACTAATAAATGTGGTTAGATTTAATTATTTTATTTTTTAAAGTTATTATGAGTGCGGATCTGTCAGTGTTATGTCTAATGTATGTATGTCTTTCGGTGTTTCATAACTTACTTATGCTTTCTTATTTTTTGGTTTATTCAGAGCTGGCTAAAATGGGAGAAACAAAATGGTATTTTTTCTGTGTGAGGGAGAGAAAATACCCAACTGGCCAAAGGACCAATAGAGCTACTAATGCTGGCTATTGGAAAGCAACAGGCAAAGACAAAGAGATTTTCAAGGGAAATGCATTAATTGGGATGAAAAAAACATTGGTTTTCTACAAAGGAAGAGCGCCGAGTGGTGAAAAAACCAATTGGGTCATGCATGAATACCGATTGGCGGGTAACACACTCTATGAGCACAACCTATCCACACATGGAATGGTAATATTGCTATATTTTTTTATTGCTTTGTTTTTGTCTATGATTTCTACTCTTACTACATGTGAAAATTCATTAGTGTATGTTCACATTGACCATGTGTTTGATAGAATTACCTTGTGTTACCGTAATTTTGACAAAAATTTTACTTTTGAATTTTGACAAAACTACCGTGTCATTATTGTCAAACTTATCGTCGATCCAAACATTCATCGAGGATCTGTTTGTAATAAATAATACAAATAGTGATTTTGATTTTTTTTTAGGGAAATAGTGATTTTGATATATATAATTAAGAGATTAATTTCCTTTTTCTAAATAAAGTAAATTATTTCATGTTTGATTGCAATCATAAAAATAAAATAAAAAAACTTTTATAAAAAATCAATTAAAAAATACAACTTTTAGAGAAACTACTGGAAACAACTTTTTGTTTGAAGCAGATTTAATATTCTTTCAAATAGAATTAAAAAAAACTGTAATAAATGAATAAAAACTAAAAAAAAAAGATTGTTTTGTTTAAAATAACGTTTTTTTCATCTAATATTTTTTTTAACAAATTTTTTCATCTAATATTAATGTGTTAACCTTTTTTTTTTTTATAGAGTGAATGGGTTCTCAGTAGAGTCTTTAAGAAGGATAATTGTGGAAAGAAAATGGATGGTTCAAAACATGGAAGGTTTAACTCCTCTAGAGAAGGACCATCAAATACTAATGAATCTCTATTGCCTCCATACAATAGTGAAAACCAAACCACTCTTTATGATTTCTCTAATGTGTTCAATCCAAATCAAATAGATAAACCAAAAACACAAGATGACAACATTGTTCATAACAATGAAACTAGTATCTTGAACATTTCATCCTCTTCAAAACAAATGGATGTTTATCCTTTAGCTGAAGTAATAACTGCTGGCTTGAACCAAACCTCAAGGGTCGGGAATTCGTCAAACTTTTTCTTCTCTCAAGAACAATCACTGTTGAGGATGCAGTTGGAGAATGAGAATCTTGGAACCACCTCAAACCAAAGCCTAAACCAAGAGTTTTCTTTTGGGAGAGACACTGATGCTGATATCTCATCTGTGGTATATGGAAATGGCATGTTTCAAAGGTGGTCTGGGAATCAAGAATTGTCATCAGCTTCAGGACATGTGGTCAATGATAGCTTGTGGAATTTCTGA
Protein sequence

>MS.gene032013.t1

MGSNENVYNQKMENEKVKFPAGYRFSPTDEELINQYLVKKVDDNNFRAIDIAEVDMNKCEPWDLPELAKMGETKWYFFCVRERKYPTGQRTNRATNAGYWKATGKDKEIFKGNALIGMKKTLVFYKGRAPSGEKTNWVMHEYRLAGNTLYEHNLSTHGMSEWVLSRVFKKDNCGKKMDGSKHGRFNSSREGPSNTNESLLPPYNSENQTTLYDFSNVFNPNQIDKPKTQDDNIVHNNETSILNISSSSKQMDVYPLAEVITAGLNQTSRVGNSSNFFFSQEQSLLRMQLENENLGTTSNQSLNQEFSFGRDTDADISSVVYGNGMFQRWSGNQELSSASGHVVNDSLWNF