AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032014

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032014.t1 MTR_3g070030 86.517 356 43 1 1 356 1 351 0.0 634
MS.gene032014.t1 MTR_3g070040 82.659 346 47 4 12 356 1 334 0.0 571
MS.gene032014.t1 MTR_7g011130 73.600 375 56 5 1 356 1 351 0.0 540
MS.gene032014.t1 MTR_7g011120 70.056 354 52 6 12 356 1 309 1.34e-169 475
MS.gene032014.t1 MTR_6g012670 49.714 350 125 7 14 356 15 320 1.27e-102 305
MS.gene032014.t1 MTR_4g108760 49.379 322 148 8 13 326 11 325 6.45e-88 269
MS.gene032014.t1 MTR_3g435150 56.828 227 92 3 5 229 2 224 2.92e-80 248
MS.gene032014.t1 MTR_2g078700 54.128 218 80 3 19 217 23 239 9.74e-76 238
MS.gene032014.t1 MTR_6g032770 65.217 161 53 2 14 172 13 172 9.93e-73 231
MS.gene032014.t1 MTR_7g085260 60.795 176 64 3 5 176 3 177 1.01e-70 226
MS.gene032014.t1 MTR_6g084430 58.101 179 70 2 19 197 5 178 1.94e-68 218
MS.gene032014.t1 MTR_1g008740 62.424 165 55 3 19 180 13 173 2.66e-67 216
MS.gene032014.t1 MTR_1g008740 62.424 165 55 3 19 180 27 187 4.06e-67 216
MS.gene032014.t1 MTR_3g109340 60.625 160 57 2 19 176 22 177 2.39e-65 211
MS.gene032014.t1 MTR_3g109340 60.000 160 57 2 19 176 22 176 3.90e-64 208
MS.gene032014.t1 MTR_3g116070 65.942 138 44 2 19 153 23 160 8.76e-61 199
MS.gene032014.t1 MTR_2g064470 44.118 238 105 8 16 246 8 224 3.82e-56 186
MS.gene032014.t1 MTR_5g041940 51.534 163 78 1 17 178 1 163 1.88e-55 182
MS.gene032014.t1 MTR_8g024480 47.500 200 95 3 14 204 10 208 5.06e-55 186
MS.gene032014.t1 MTR_4g035590 58.125 160 56 3 20 175 9 161 2.75e-54 182
MS.gene032014.t1 MTR_4g101680 54.777 157 57 3 20 170 8 156 2.84e-54 182
MS.gene032014.t1 MTR_4g081870 50.568 176 81 3 18 188 8 182 3.00e-54 179
MS.gene032014.t1 MTR_3g093050 45.833 216 109 4 19 231 22 232 4.02e-54 187
MS.gene032014.t1 MTR_5g012080 53.293 167 68 4 20 180 8 170 4.21e-54 181
MS.gene032014.t1 MTR_8g059170 50.932 161 78 1 16 176 11 170 4.44e-54 181
MS.gene032014.t1 MTR_3g093050 45.833 216 109 4 19 231 22 232 6.33e-54 187
MS.gene032014.t1 MTR_1g069805 45.902 183 88 3 19 199 10 183 4.20e-53 177
MS.gene032014.t1 MTR_4g036030 53.896 154 63 3 20 170 8 156 1.32e-52 177
MS.gene032014.t1 MTR_3g093040 51.190 168 70 3 17 175 106 270 3.01e-52 176
MS.gene032014.t1 MTR_8g094580 49.425 174 80 3 17 186 5 174 3.24e-52 175
MS.gene032014.t1 MTR_3g088110 50.323 155 76 1 16 170 4 157 4.09e-52 174
MS.gene032014.t1 MTR_5g069030 49.180 183 86 3 18 198 24 201 7.30e-52 182
MS.gene032014.t1 MTR_7g085220 48.555 173 79 2 12 174 1 173 1.15e-51 175
MS.gene032014.t1 MTR_2g079990 50.311 161 77 1 16 176 13 170 1.45e-51 175
MS.gene032014.t1 MTR_2g062730 52.695 167 64 6 16 175 7 165 4.49e-51 174
MS.gene032014.t1 MTR_1g096430 51.592 157 62 3 20 170 8 156 5.92e-51 173
MS.gene032014.t1 MTR_7g100990 51.534 163 76 2 11 170 3 165 7.21e-51 172
MS.gene032014.t1 MTR_7g097090 42.342 222 106 6 19 228 10 221 1.53e-50 171
MS.gene032014.t1 MTR_8g076110 51.948 154 66 3 20 170 7 155 1.99e-50 171
MS.gene032014.t1 MTR_2g064090 52.500 160 64 3 17 170 4 157 2.69e-50 171
MS.gene032014.t1 MTR_2g080010 46.784 171 81 2 15 175 11 181 6.94e-50 171
MS.gene032014.t1 MTR_6g477900 52.229 157 70 2 17 171 4 157 7.21e-50 167
MS.gene032014.t1 MTR_3g096920 49.677 155 77 1 16 170 4 157 8.66e-50 169
MS.gene032014.t1 MTR_5g021710 50.000 162 73 3 12 170 1 157 1.04e-49 170
MS.gene032014.t1 MTR_5g076850 43.662 213 105 3 17 217 4 213 1.29e-49 176
MS.gene032014.t1 MTR_4g089135 46.023 176 73 3 19 172 15 190 9.37e-49 167
MS.gene032014.t1 MTR_7g005280 52.096 167 68 6 13 176 9 166 1.73e-48 164
MS.gene032014.t1 MTR_2157s0010 48.214 168 78 2 12 170 1 168 3.25e-48 164
MS.gene032014.t1 MTR_3g064580 51.923 156 71 2 17 170 4 157 4.43e-48 172
MS.gene032014.t1 MTR_2g079990 43.548 186 80 2 16 176 13 198 1.39e-47 165
MS.gene032014.t1 MTR_8g063550 45.562 169 86 3 18 184 5 169 1.29e-46 162
MS.gene032014.t1 MTR_8g467490 46.988 166 79 3 15 172 11 175 1.87e-46 163
MS.gene032014.t1 MTR_2g093810 50.000 152 73 2 19 167 14 165 2.78e-46 160
MS.gene032014.t1 MTR_1g090723 41.892 222 116 6 22 240 11 222 3.37e-46 166
MS.gene032014.t1 MTR_8g063550 45.562 169 86 3 18 184 5 169 4.18e-46 163
MS.gene032014.t1 MTR_8g063550 45.562 169 86 3 18 184 5 169 5.12e-46 162
MS.gene032014.t1 MTR_6g011860 47.205 161 74 3 21 172 17 175 7.38e-46 161
MS.gene032014.t1 MTR_1g090723 41.892 222 117 6 22 240 11 223 7.56e-46 166
MS.gene032014.t1 MTR_1g090723 41.892 222 116 6 22 240 11 222 8.44e-46 165
MS.gene032014.t1 MTR_3g096920 54.615 130 58 1 16 145 4 132 1.23e-45 159
MS.gene032014.t1 MTR_3g096140 37.984 258 125 9 12 240 1 252 1.61e-45 157
MS.gene032014.t1 MTR_5g040420 47.273 165 79 4 15 172 11 174 3.30e-45 159
MS.gene032014.t1 MTR_3g096140 37.984 258 125 9 12 240 1 252 1.94e-44 156
MS.gene032014.t1 MTR_4g098630 39.720 214 116 5 15 223 2 207 4.34e-44 154
MS.gene032014.t1 MTR_8g093580 40.444 225 118 7 18 230 5 225 6.98e-44 158
MS.gene032014.t1 MTR_0036s0150 47.879 165 78 4 22 183 8 167 7.71e-44 159
MS.gene032014.t1 MTR_5g014300 43.455 191 90 4 19 197 6 190 1.91e-43 153
MS.gene032014.t1 MTR_1g097300 48.795 166 75 4 22 183 22 181 1.48e-42 155
MS.gene032014.t1 MTR_2g068920 42.188 192 94 6 1 176 1 191 6.09e-42 148
MS.gene032014.t1 MTR_2g068880 42.932 191 85 6 1 171 1 187 6.84e-42 149
MS.gene032014.t1 MTR_5g090970 35.338 266 156 6 8 263 9 268 4.87e-41 146
MS.gene032014.t1 MTR_4g134460 47.020 151 74 2 21 170 56 201 4.98e-41 149
MS.gene032014.t1 MTR_2g086880 53.600 125 56 2 19 142 19 142 2.04e-40 150
MS.gene032014.t1 MTR_2g086880 53.600 125 56 2 19 142 19 142 2.07e-40 149
MS.gene032014.t1 MTR_1g090720 45.882 170 86 3 21 185 44 212 3.29e-39 145
MS.gene032014.t1 MTR_5g090970 35.338 266 155 7 8 263 9 267 3.78e-39 141
MS.gene032014.t1 MTR_3g096140 37.179 234 113 8 36 240 3 231 1.96e-37 137
MS.gene032014.t1 MTR_8g023840 54.198 131 54 5 20 145 12 141 4.17e-37 138
MS.gene032014.t1 MTR_8g099750 41.875 160 87 3 12 167 7 164 4.30e-37 134
MS.gene032014.t1 MTR_4g075980 39.779 181 94 4 1 178 1 169 2.19e-36 134
MS.gene032014.t1 MTR_3g098810 42.169 166 87 4 12 170 7 170 1.83e-35 129
MS.gene032014.t1 MTR_8g023860 51.163 129 57 5 20 143 13 140 7.71e-35 132
MS.gene032014.t1 MTR_8g094580 52.033 123 51 3 67 185 1 119 9.78e-34 125
MS.gene032014.t1 MTR_3g098810 44.928 138 70 2 12 145 7 142 6.15e-33 121
MS.gene032014.t1 MTR_4g052620 42.038 157 83 4 19 168 5 160 6.31e-33 123
MS.gene032014.t1 MTR_2g064730 77.632 76 12 2 214 284 6 81 3.15e-31 114
MS.gene032014.t1 MTR_2g086690 40.385 156 86 4 20 168 5 160 9.82e-31 117
MS.gene032014.t1 MTR_7g105170 39.645 169 93 6 19 178 4 172 3.47e-30 116
MS.gene032014.t1 MTR_8g023930 34.940 249 126 10 19 260 24 243 8.51e-30 119
MS.gene032014.t1 MTR_8g023900 42.949 156 73 7 21 170 195 340 1.70e-29 118
MS.gene032014.t1 MTR_8g023900 41.875 160 75 7 19 170 12 161 1.22e-27 113
MS.gene032014.t1 MTR_8g023880 46.528 144 55 7 19 143 7 147 3.32e-27 108
MS.gene032014.t1 MTR_4g094302 34.524 168 97 3 19 181 11 170 8.63e-25 100
MS.gene032014.t1 MTR_7g070140 54.667 75 32 1 72 144 17 91 1.94e-23 94.7
MS.gene032014.t1 MTR_4g094302 37.500 128 70 2 19 144 11 130 1.53e-22 93.2
MS.gene032014.t1 MTR_3g096400 35.465 172 84 7 15 171 3 162 7.92e-21 89.7
MS.gene032014.t1 MTR_8g093790 34.158 202 106 7 17 217 8 183 9.96e-20 86.3
MS.gene032014.t1 MTR_7g083360 35.075 134 81 5 12 142 3 133 6.72e-17 77.4
MS.gene032014.t1 MTR_7g083330 32.609 138 87 5 8 142 7 141 7.30e-17 78.2
MS.gene032014.t1 MTR_2g014680 32.609 184 98 6 2 168 36 210 2.64e-16 79.0
MS.gene032014.t1 MTR_7g083370 32.143 140 89 4 14 150 5 141 3.51e-15 72.4
MS.gene032014.t1 MTR_8g102240 32.386 176 82 9 19 168 47 211 1.20e-12 69.3
MS.gene032014.t1 MTR_8g102240 32.386 176 82 9 19 168 47 211 1.20e-12 69.3
MS.gene032014.t1 MTR_7g070150 46.032 63 22 2 111 170 4 57 5.42e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032014.t1 AT5G61430 47.727 352 150 9 13 356 10 335 8.59e-96 288
MS.gene032014.t1 AT5G07680 46.418 349 157 8 10 356 8 328 1.49e-90 275
MS.gene032014.t1 AT5G07680 47.059 340 150 8 19 356 3 314 2.35e-89 271
MS.gene032014.t1 AT3G29035 43.132 364 141 13 3 355 8 316 6.54e-78 242
MS.gene032014.t1 AT5G39610 54.310 232 92 5 13 244 14 231 1.27e-74 233
MS.gene032014.t1 AT5G18270 66.038 159 52 2 15 172 17 174 2.84e-72 228
MS.gene032014.t1 AT5G18270 66.038 159 52 2 15 172 17 174 5.19e-72 228
MS.gene032014.t1 AT5G53950 68.831 154 45 2 19 170 17 169 2.78e-71 227
MS.gene032014.t1 AT3G04060 56.219 201 85 3 7 205 8 207 4.74e-71 225
MS.gene032014.t1 AT5G61430 45.638 298 128 9 67 356 1 272 2.71e-70 221
MS.gene032014.t1 AT3G18400 51.691 207 94 2 19 223 5 207 9.41e-70 221
MS.gene032014.t1 AT2G24430 61.176 170 60 2 9 176 6 171 2.32e-68 218
MS.gene032014.t1 AT2G24430 61.176 170 60 2 9 176 6 171 2.32e-68 218
MS.gene032014.t1 AT3G15170 63.580 162 55 3 11 170 13 172 9.91e-67 213
MS.gene032014.t1 AT1G76420 62.338 154 52 2 19 170 22 171 1.39e-65 211
MS.gene032014.t1 AT3G12977 37.643 263 147 5 19 281 18 263 5.63e-59 192
MS.gene032014.t1 AT1G56010 36.337 344 180 11 1 327 1 322 9.42e-58 190
MS.gene032014.t1 AT2G46770 38.163 283 147 6 14 271 11 290 8.76e-57 189
MS.gene032014.t1 AT4G10350 57.233 159 62 2 20 175 10 165 9.27e-55 183
MS.gene032014.t1 AT3G61910 43.556 225 110 6 14 225 6 226 6.71e-54 181
MS.gene032014.t1 AT4G35580 46.154 208 98 6 19 221 9 207 2.11e-53 184
MS.gene032014.t1 AT1G12260 55.195 154 61 3 20 170 8 156 2.22e-53 179
MS.gene032014.t1 AT4G35580 46.154 208 98 6 19 221 9 207 3.03e-53 184
MS.gene032014.t1 AT4G35580 46.154 208 98 6 19 221 9 207 3.10e-53 184
MS.gene032014.t1 AT1G12260 55.195 154 61 3 20 170 8 156 3.52e-53 181
MS.gene032014.t1 AT1G33280 55.346 159 62 3 20 175 9 161 1.14e-52 176
MS.gene032014.t1 AT1G77450 50.649 154 75 1 17 170 8 160 1.51e-52 174
MS.gene032014.t1 AT1G62700 53.459 159 60 3 18 170 6 156 1.85e-52 179
MS.gene032014.t1 AT1G62700 53.459 159 60 3 18 170 6 156 1.85e-52 179
MS.gene032014.t1 AT5G08790 39.216 255 138 6 16 260 4 251 2.10e-52 175
MS.gene032014.t1 AT4G27410 51.899 158 67 3 16 170 11 162 2.49e-52 176
MS.gene032014.t1 AT1G33060 54.088 159 66 3 19 173 24 179 2.59e-52 183
MS.gene032014.t1 AT1G33060 54.088 159 66 3 19 173 24 179 2.79e-52 183
MS.gene032014.t1 AT1G32770 34.195 348 172 9 14 335 11 327 1.68e-51 175
MS.gene032014.t1 AT3G04070 52.047 171 71 4 13 173 4 173 1.96e-51 174
MS.gene032014.t1 AT5G66300 51.613 155 68 2 19 170 12 162 2.30e-51 173
MS.gene032014.t1 AT3G15500 50.311 161 77 2 16 176 11 168 6.44e-51 172
MS.gene032014.t1 AT5G62380 52.903 155 65 3 19 170 7 156 9.31e-51 173
MS.gene032014.t1 AT5G62380 52.903 155 65 3 19 170 7 156 9.31e-51 173
MS.gene032014.t1 AT1G71930 49.677 155 70 3 19 170 9 158 9.77e-51 172
MS.gene032014.t1 AT1G71930 49.677 155 70 3 19 170 9 158 9.77e-51 172
MS.gene032014.t1 AT1G52890 50.932 161 76 2 16 176 11 168 1.21e-50 172
MS.gene032014.t1 AT1G01720 50.000 158 77 2 14 170 2 158 1.62e-50 171
MS.gene032014.t1 AT2G18060 49.390 164 75 3 15 175 5 163 3.03e-50 172
MS.gene032014.t1 AT2G18060 49.390 164 75 3 15 175 5 163 3.03e-50 172
MS.gene032014.t1 AT4G36160 50.625 160 71 3 14 170 9 163 4.42e-50 172
MS.gene032014.t1 AT4G36160 50.625 160 71 3 14 170 5 159 4.47e-50 172
MS.gene032014.t1 AT4G36160 50.625 160 71 3 14 170 5 159 4.47e-50 172
MS.gene032014.t1 AT3G03200 54.777 157 65 3 17 170 4 157 4.81e-50 174
MS.gene032014.t1 AT5G63790 51.515 165 70 4 11 170 43 202 4.84e-50 170
MS.gene032014.t1 AT5G63790 50.292 171 75 4 11 176 53 218 5.59e-50 170
MS.gene032014.t1 AT1G61110 47.191 178 84 3 5 172 2 179 6.52e-50 170
MS.gene032014.t1 AT1G65910 48.824 170 80 3 17 183 4 169 7.20e-50 177
MS.gene032014.t1 AT3G17730 48.214 168 82 2 17 182 4 168 9.65e-50 167
MS.gene032014.t1 AT1G69490 50.311 161 79 1 19 178 9 169 9.90e-50 168
MS.gene032014.t1 AT5G17260 54.140 157 66 3 17 170 4 157 2.22e-49 172
MS.gene032014.t1 AT3G04070 45.699 186 76 3 13 173 4 189 4.01e-49 169
MS.gene032014.t1 AT3G49530 47.368 171 80 4 4 171 2 165 5.76e-48 167
MS.gene032014.t1 AT4G27410 46.857 175 67 4 16 170 11 179 8.61e-48 164
MS.gene032014.t1 AT1G79580 52.174 161 67 4 16 172 14 168 1.06e-47 166
MS.gene032014.t1 AT1G79580 52.174 161 67 4 16 172 14 168 1.06e-47 166
MS.gene032014.t1 AT1G79580 52.174 161 67 4 16 172 14 168 1.06e-47 166
MS.gene032014.t1 AT1G79580 52.174 161 67 4 16 172 14 168 1.06e-47 166
MS.gene032014.t1 AT1G79580 52.174 161 67 4 16 172 14 168 1.06e-47 166
MS.gene032014.t1 AT5G24590 38.521 257 126 9 19 271 13 241 1.08e-47 167
MS.gene032014.t1 AT4G28530 40.000 220 102 5 18 214 9 221 1.18e-47 165
MS.gene032014.t1 AT2G33480 52.597 154 67 3 17 170 13 160 1.44e-47 162
MS.gene032014.t1 AT1G26870 38.406 276 150 9 1 263 1 269 1.51e-47 166
MS.gene032014.t1 AT3G15510 42.000 200 104 4 23 210 21 220 1.58e-47 165
MS.gene032014.t1 AT3G49530 47.368 171 80 4 4 171 2 165 1.59e-47 167
MS.gene032014.t1 AT5G04410 50.000 166 73 4 22 183 12 171 1.96e-47 169
MS.gene032014.t1 AT1G54330 52.229 157 67 2 17 171 4 154 1.98e-47 163
MS.gene032014.t1 AT5G13180 47.904 167 78 3 12 176 7 166 2.45e-47 161
MS.gene032014.t1 AT2G33480 52.597 154 65 3 17 170 13 158 3.58e-47 161
MS.gene032014.t1 AT3G10500 48.171 164 79 3 22 183 12 171 3.86e-47 168
MS.gene032014.t1 AT3G10480 50.595 168 73 4 22 185 30 191 8.59e-47 165
MS.gene032014.t1 AT3G10480 50.296 169 73 4 22 185 30 192 3.50e-46 163
MS.gene032014.t1 AT2G27300 56.923 130 52 4 19 146 15 142 8.99e-46 159
MS.gene032014.t1 AT3G10490 48.521 169 76 4 22 185 30 192 1.19e-45 156
MS.gene032014.t1 AT5G46590 49.032 155 74 3 19 170 6 158 1.32e-45 158
MS.gene032014.t1 AT5G46590 51.471 136 63 2 19 151 6 141 1.19e-44 155
MS.gene032014.t1 AT5G09330 43.529 170 90 3 16 183 3 168 1.41e-44 160
MS.gene032014.t1 AT5G09330 43.529 170 90 3 16 183 3 168 1.41e-44 160
MS.gene032014.t1 AT5G09330 43.529 170 90 3 16 183 3 168 1.41e-44 160
MS.gene032014.t1 AT5G09330 43.529 170 90 3 16 183 3 168 1.41e-44 160
MS.gene032014.t1 AT5G09330 43.529 170 90 3 16 183 3 168 1.41e-44 160
MS.gene032014.t1 AT3G10490 48.521 169 76 4 22 185 30 192 1.71e-44 159
MS.gene032014.t1 AT5G39820 44.767 172 75 3 22 173 23 194 2.81e-44 155
MS.gene032014.t1 AT5G64060 42.941 170 91 3 16 183 3 168 1.55e-43 154
MS.gene032014.t1 AT2G43000 41.765 170 96 2 1 170 1 167 2.78e-43 151
MS.gene032014.t1 AT4G17980 46.835 158 77 4 19 171 6 161 5.71e-42 147
MS.gene032014.t1 AT4G17980 47.134 157 76 4 19 170 6 160 9.37e-42 147
MS.gene032014.t1 AT1G52880 46.541 159 76 2 23 172 21 179 1.79e-41 148
MS.gene032014.t1 AT2G02450 46.667 150 74 2 22 170 54 198 1.99e-41 149
MS.gene032014.t1 AT2G02450 46.667 150 74 2 22 170 54 198 2.39e-41 150
MS.gene032014.t1 AT3G10480 43.564 202 70 5 22 185 30 225 1.87e-40 149
MS.gene032014.t1 AT1G34190 39.252 214 121 5 18 226 14 223 2.17e-40 150
MS.gene032014.t1 AT1G32510 45.062 162 78 3 19 171 6 165 2.50e-40 144
MS.gene032014.t1 AT5G22290 47.761 134 68 2 19 151 22 154 4.44e-40 144
MS.gene032014.t1 AT3G44290 49.242 132 65 2 19 149 15 145 5.98e-40 141
MS.gene032014.t1 AT1G34180 45.029 171 83 5 18 183 14 178 1.43e-39 145
MS.gene032014.t1 AT3G12977 36.697 218 121 5 64 281 10 210 1.87e-39 140
MS.gene032014.t1 AT1G34180 45.029 171 83 5 18 183 14 178 4.88e-39 146
MS.gene032014.t1 AT3G44290 49.242 132 65 2 19 149 15 145 5.95e-39 141
MS.gene032014.t1 AT2G17040 41.615 161 83 2 21 178 8 160 6.01e-38 137
MS.gene032014.t1 AT1G56010 36.462 277 138 10 67 327 1 255 2.16e-37 135
MS.gene032014.t1 AT1G34180 41.530 183 84 5 18 183 14 190 2.36e-37 140
MS.gene032014.t1 AT3G12910 36.364 253 117 8 13 223 16 266 2.59e-37 136
MS.gene032014.t1 AT1G34180 41.530 183 84 5 18 183 14 190 7.05e-37 140
MS.gene032014.t1 AT4G10350 57.391 115 43 2 64 175 7 118 1.97e-35 131
MS.gene032014.t1 AT1G32870 45.238 168 78 5 22 183 13 172 6.43e-35 134
MS.gene032014.t1 AT1G32870 45.238 168 78 5 22 183 13 172 9.13e-35 134
MS.gene032014.t1 AT1G32870 45.238 168 78 5 22 183 49 208 1.08e-34 134
MS.gene032014.t1 AT5G04395 44.138 145 65 2 19 147 28 172 2.40e-32 120
MS.gene032014.t1 AT2G33480 56.566 99 40 2 72 170 8 103 8.46e-31 116
MS.gene032014.t1 AT4G28530 43.411 129 55 3 18 128 9 137 5.95e-29 114
MS.gene032014.t1 AT5G22380 33.649 211 123 7 22 223 8 210 7.56e-29 112
MS.gene032014.t1 AT4G01550 45.926 135 67 4 17 145 2 136 2.29e-28 115
MS.gene032014.t1 AT3G44350 33.668 199 124 5 21 213 7 203 2.91e-28 110
MS.gene032014.t1 AT4G01520 42.222 135 71 5 17 144 2 136 7.73e-27 108
MS.gene032014.t1 AT1G02230 46.154 130 60 6 20 142 4 130 9.04e-27 109
MS.gene032014.t1 AT3G04420 41.732 127 70 2 20 142 4 130 1.52e-26 107
MS.gene032014.t1 AT3G04420 41.732 127 70 2 20 142 4 130 3.85e-26 107
MS.gene032014.t1 AT4G01540 43.939 132 65 6 22 145 7 137 5.44e-26 107
MS.gene032014.t1 AT4G01540 44.275 131 64 6 22 144 7 136 9.78e-26 107
MS.gene032014.t1 AT4G01540 43.939 132 65 6 22 145 7 137 1.06e-25 107
MS.gene032014.t1 AT4G01540 43.939 132 65 6 22 145 7 137 1.30e-25 107
MS.gene032014.t1 AT3G44350 40.310 129 71 3 21 143 7 135 4.22e-25 100
MS.gene032014.t1 AT3G10490 53.608 97 36 3 92 185 2 92 1.43e-24 103
MS.gene032014.t1 AT3G10490 53.608 97 36 3 92 185 2 92 1.43e-24 103
MS.gene032014.t1 AT1G02250 32.536 209 124 6 20 221 4 202 1.92e-23 100
MS.gene032014.t1 AT1G02220 39.370 127 70 3 20 142 4 127 7.53e-23 99.0
MS.gene032014.t1 AT2G18060 53.165 79 32 2 97 175 2 75 7.64e-21 91.3
MS.gene032014.t1 AT5G64530 31.792 173 92 5 19 178 3 162 2.93e-19 84.7
MS.gene032014.t1 AT1G01010 36.301 146 73 6 21 152 5 144 3.69e-19 88.6
MS.gene032014.t1 AT2G43000 42.857 91 50 1 80 170 1 89 3.72e-19 84.7
MS.gene032014.t1 AT5G14000 32.948 173 105 4 14 183 10 174 5.95e-19 84.7
MS.gene032014.t1 AT5G64530 37.405 131 64 7 19 145 3 119 1.40e-18 82.0
MS.gene032014.t1 AT5G14000 35.556 135 83 2 14 146 10 142 2.87e-18 81.3
MS.gene032014.t1 AT3G56530 34.848 132 81 3 15 142 48 178 1.08e-17 83.2
MS.gene032014.t1 AT5G50820 29.775 178 110 5 12 182 10 179 4.39e-17 79.0
MS.gene032014.t1 AT5G22290 55.556 54 24 0 98 151 2 55 4.76e-16 77.0
MS.gene032014.t1 AT3G04430 37.500 136 69 5 23 143 2 136 5.20e-16 76.3
MS.gene032014.t1 AT3G55210 32.143 140 81 3 19 144 11 150 5.16e-14 72.0
MS.gene032014.t1 AT5G56620 31.319 182 84 7 17 168 41 211 9.11e-13 69.3
MS.gene032014.t1 AT4G29230 32.402 179 83 9 17 168 46 213 9.99e-13 69.3
MS.gene032014.t1 AT4G29230 32.402 179 83 9 17 168 45 212 1.06e-12 69.3
MS.gene032014.t1 AT5G56620 31.319 182 84 7 17 168 41 211 1.13e-12 68.9
MS.gene032014.t1 AT5G56620 32.240 183 81 8 17 168 41 211 1.61e-12 68.6
MS.gene032014.t1 AT4G29230 32.402 179 83 9 17 168 46 213 2.46e-12 68.2
MS.gene032014.t1 AT5G14490 32.192 146 77 5 19 145 58 200 7.42e-12 66.2
MS.gene032014.t1 AT5G14490 32.192 146 77 5 19 145 55 197 7.94e-12 66.2
MS.gene032014.t1 AT5G14490 32.192 146 77 5 19 145 58 200 1.06e-11 65.9
MS.gene032014.t1 AT5G14490 32.192 146 77 5 19 145 55 197 2.25e-11 64.3

Find 71 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTATTGTCTACATTAT+TGG 0.093326 3.1:-57400905 MS.gene032014:CDS
TTCAAGGGAAATGCATTAAT+TGG 0.121823 3.1:-57402449 MS.gene032014:CDS
TTATTCAGAGCTGGCTAAAA+TGG 0.240651 3.1:-57402588 MS.gene032014:intron
AAATGAAAAGGTCAAATTTC+CGG 0.296027 3.1:-57403562 MS.gene032014:CDS
GGATAATTGTGGAAAGAAAA+TGG 0.302070 3.1:-57400986 MS.gene032014:CDS
AGAGATTCATTAGTATTTGA+TGG 0.305472 3.1:+57400922 None:intergenic
GATATCTCATCTGTGGTATA+TGG 0.312060 3.1:-57400535 MS.gene032014:CDS
TTTGGTTTCTCTGTTTGATT+TGG 0.323737 3.1:+57400820 None:intergenic
CAAAAGAAAACTCTTGGTTT+AGG 0.327229 3.1:+57400575 None:intergenic
GCAGTTATTACTTCAGATAA+AGG 0.344013 3.1:+57400715 None:intergenic
TAGTAGCTCTATTGGTCCTT+TGG 0.349158 3.1:+57402513 None:intergenic
TTCATCCTCTTCAAAACAAA+TGG 0.371961 3.1:-57400746 MS.gene032014:CDS
TATTGGTCCTTTGGCCAGTT+GGG 0.376646 3.1:+57402522 None:intergenic
GGCATGTTTCAAAGGTGGTC+TGG 0.377514 3.1:-57400508 MS.gene032014:CDS
CTAAAATGGGAGAAACAAAA+TGG 0.380978 3.1:-57402574 MS.gene032014:CDS
GAGCTACTAATGCTGGCTAT+TGG 0.387868 3.1:-57402499 MS.gene032014:CDS
GCCAGCATTAGTAGCTCTAT+TGG 0.388516 3.1:+57402505 None:intergenic
TCAAGGGAAATGCATTAATT+GGG 0.420828 3.1:-57402448 MS.gene032014:CDS
CTCTCCCAAAAGAAAACTCT+TGG 0.435959 3.1:+57400569 None:intergenic
TCATCTGTGGTATATGGAAA+TGG 0.441427 3.1:-57400529 MS.gene032014:CDS
GAATTGTCATCAGCCTCTAC+TGG 0.442082 3.1:-57400478 MS.gene032014:CDS
AATTCCCGACCATTGAGGTT+TGG 0.446812 3.1:+57400683 None:intergenic
CTATTGGTCCTTTGGCCAGT+TGG 0.450132 3.1:+57402521 None:intergenic
AGAAATCAGAAAGAGTGGTT+TGG 0.458377 3.1:+57400857 None:intergenic
GCATGTTTCAAAGGTGGTCT+GGG 0.461659 3.1:-57400507 MS.gene032014:CDS
GTATTCATGCATGACCCAAT+TGG 0.462426 3.1:+57402373 None:intergenic
TATTCAGAGCTGGCTAAAAT+GGG 0.463612 3.1:-57402587 MS.gene032014:intron
AAATCAATACCTTGTCAAGA+AGG 0.466786 3.1:-57403502 MS.gene032014:CDS
GCTGGCTATTGGAAAGCAAC+AGG 0.467708 3.1:-57402488 MS.gene032014:CDS
ACCAATAGAGCTACTAATGC+TGG 0.495849 3.1:-57402506 MS.gene032014:CDS
TTGATTTATAAGCTCTTCAT+CGG 0.497039 3.1:+57403518 None:intergenic
TGAACCAAACCTCAATGGTC+GGG 0.518181 3.1:-57400687 MS.gene032014:CDS
TTGGTTTAGGCTTTGTCTTG+AGG 0.519044 3.1:+57400588 None:intergenic
AGGGAGAGAAAATACCCAAC+TGG 0.520226 3.1:-57402536 MS.gene032014:CDS
TTACCATTCCATGTGTGGAT+AGG 0.526862 3.1:+57402318 None:intergenic
TGATTTGAACCAAACCTCAA+TGG 0.533542 3.1:-57400692 MS.gene032014:CDS
CAGTTGGAGAATGAGAATCT+TGG 0.538735 3.1:-57400616 MS.gene032014:CDS
ATGGAAATGGCATGTTTCAA+AGG 0.539060 3.1:-57400516 MS.gene032014:CDS
TTTATAAGCTCTTCATCGGT+CGG 0.540210 3.1:+57403522 None:intergenic
GAAAAGGTCAAATTTCCGGC+TGG 0.542041 3.1:-57403558 MS.gene032014:CDS
ATGCATGAATACCGATTGGC+GGG 0.543086 3.1:-57402362 MS.gene032014:CDS
CAACCTATCCACACATGGAA+TGG 0.547037 3.1:-57402321 MS.gene032014:intron
GTCTTTAAGAAGGATAATTG+TGG 0.552416 3.1:-57400997 MS.gene032014:CDS
ATCACTGTTGAGGATGCAGT+TGG 0.553870 3.1:-57400632 MS.gene032014:CDS
AATTGTGGAAAGAAAATGGA+TGG 0.567327 3.1:-57400982 MS.gene032014:CDS
CAATATTACCATTCCATGTG+TGG 0.569497 3.1:+57402313 None:intergenic
AAAATGGATGGTTCAAAACA+TGG 0.570089 3.1:-57400970 MS.gene032014:CDS
AGAGTGTGTTACCCGCCAAT+CGG 0.570583 3.1:+57402351 None:intergenic
TTGAACCAAACCTCAATGGT+CGG 0.571612 3.1:-57400688 MS.gene032014:CDS
CTCAAGAACAATCACTGTTG+AGG 0.576259 3.1:-57400642 MS.gene032014:CDS
TCTCAGTAGAGTCTTTAAGA+AGG 0.576793 3.1:-57401007 MS.gene032014:CDS
TGGATGGTTCAAAACATGGA+AGG 0.583286 3.1:-57400966 MS.gene032014:CDS
TGACGAATTCCCGACCATTG+AGG 0.585386 3.1:+57400678 None:intergenic
AATTCACCTGGCAAATCCCA+TGG 0.596462 3.1:+57403420 None:intergenic
ATCAGCCTCTACTGGACATG+TGG 0.599524 3.1:-57400470 MS.gene032014:CDS
ATTTGATGGTACTTCTCTAG+AGG 0.599701 3.1:+57400936 None:intergenic
CATGCATGAATACCGATTGG+CGG 0.600090 3.1:-57402363 MS.gene032014:CDS
ATGAGAGAAATCAGAAAGAG+TGG 0.605218 3.1:+57400852 None:intergenic
TGTCATCAACCTTCTTGACA+AGG 0.607463 3.1:+57403493 None:intergenic
GGTCATGCATGAATACCGAT+TGG 0.609797 3.1:-57402366 MS.gene032014:CDS
TGTGAACCATGGGATTTGCC+AGG 0.615720 3.1:-57403426 MS.gene032014:intron
ATTGACCACATGTCCAGTAG+AGG 0.618147 3.1:+57400465 None:intergenic
GGAGAGAATCGATAACCAGC+CGG 0.632530 3.1:+57403543 None:intergenic
GAAAATACCCAACTGGCCAA+AGG 0.637584 3.1:-57402529 MS.gene032014:CDS
TATGAATAAGTGTGAACCAT+GGG 0.641317 3.1:-57403436 MS.gene032014:CDS
ATGTGGTCAATGATAGCTTG+TGG 0.641641 3.1:-57400453 MS.gene032014:CDS
GAAATGGCATGTTTCAAAGG+TGG 0.654634 3.1:-57400513 MS.gene032014:CDS
GAGCACAACCTATCCACACA+TGG 0.663138 3.1:-57402326 MS.gene032014:CDS
ATATGAATAAGTGTGAACCA+TGG 0.681966 3.1:-57403437 MS.gene032014:CDS
TGATGCTGATATCTCATCTG+TGG 0.688150 3.1:-57400542 MS.gene032014:CDS
TACAAAGGAAGAGCGCCGAG+TGG 0.721558 3.1:-57402404 MS.gene032014:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr3.1:57402999-57403018 None:intergenic 0.0%
!! TGTTTATATGATAAAATATT+AGG + chr3.1:57402262-57402281 None:intergenic 10.0%
!!! AATTTACTTTATTTAGAAAA+AGG + chr3.1:57402721-57402740 None:intergenic 10.0%
!! AAATAGAAAGAAAAACAATT+TGG - chr3.1:57401106-57401125 MS.gene032014:intron 15.0%
!! ATTATATTATATTAGTAGTC+TGG - chr3.1:57400679-57400698 MS.gene032014:CDS 15.0%
!! TAAAAAAAAAAAAAACTCCA+AGG + chr3.1:57400720-57400739 None:intergenic 15.0%
!! TAAAGACATTAAAAACTAAA+GGG - chr3.1:57400779-57400798 MS.gene032014:CDS 15.0%
!! TTAAAGACATTAAAAACTAA+AGG - chr3.1:57400778-57400797 MS.gene032014:CDS 15.0%
!!! AATTGTTTTTCTTTCTATTT+TGG + chr3.1:57401106-57401125 None:intergenic 15.0%
!!! AGTGATTTTGATTTTTTTTA+GGG - chr3.1:57402656-57402675 MS.gene032014:intron 15.0%
!!! TAAAGTTTTTGTCAAAATTA+CGG + chr3.1:57402540-57402559 None:intergenic 15.0%
!!! TAGTGATTTTGATTTTTTTT+AGG - chr3.1:57402655-57402674 MS.gene032014:intron 15.0%
!!! TTTTTTTTTATAGAGTGAAT+GGG - chr3.1:57403013-57403032 MS.gene032014:intron 15.0%
!!! TTTTTTTTTTATAGAGTGAA+TGG - chr3.1:57403012-57403031 MS.gene032014:intron 15.0%
!! AAAAAAACAATAAATTCACC+TGG + chr3.1:57400639-57400658 None:intergenic 20.0%
!! AAAGACATTAAAAACTAAAG+GGG - chr3.1:57400780-57400799 MS.gene032014:CDS 20.0%
!! AGTAATATTCATTATTCTTG+CGG + chr3.1:57402035-57402054 None:intergenic 20.0%
!! ATAAGCATGAAACAAATTAT+TGG + chr3.1:57402201-57402220 None:intergenic 20.0%
!! GAATGTTTACAATCAAAAAA+TGG - chr3.1:57400458-57400477 MS.gene032014:CDS 20.0%
!! GGTAAAACTTATATCAAAAT+AGG + chr3.1:57402241-57402260 None:intergenic 20.0%
!! TAAGCATGAAACAAATTATT+GGG + chr3.1:57402200-57402219 None:intergenic 20.0%
!! TCAAAAAATGGAAAATGAAA+AGG - chr3.1:57400470-57400489 MS.gene032014:CDS 20.0%
!!! ACTTATGCTTTCTTATTTTT+TGG - chr3.1:57401432-57401451 MS.gene032014:intron 20.0%
!!! ACTTGTTACAAAATAAACAT+AGG + chr3.1:57402299-57402318 None:intergenic 20.0%
!!! TTTTAAAGTTATTATGAGTG+CGG - chr3.1:57401357-57401376 MS.gene032014:intron 20.0%
! AAAGAAAACAAATTCATCAC+TGG + chr3.1:57402173-57402192 None:intergenic 25.0%
! AAATGAAAAGGTCAAATTTC+CGG - chr3.1:57400482-57400501 MS.gene032014:CDS 25.0%
! AATTGGGATGAAAAAAACAT+TGG - chr3.1:57401612-57401631 MS.gene032014:intron 25.0%
! AGAGATTCATTAGTATTTGA+TGG + chr3.1:57403125-57403144 None:intergenic 25.0%
! ATCTCTATTGTCTACATTAT+TGG - chr3.1:57403139-57403158 MS.gene032014:intron 25.0%
! CAAAGAAGACTTAATTTATG+TGG - chr3.1:57401065-57401084 MS.gene032014:intron 25.0%
! CACATAAATTAAGTCTTCTT+TGG + chr3.1:57401067-57401086 None:intergenic 25.0%
! GAAAGAAAAACAATTTGGAA+TGG - chr3.1:57401111-57401130 MS.gene032014:intron 25.0%
! TAAATTAAGTCTTCTTTGGT+AGG + chr3.1:57401063-57401082 None:intergenic 25.0%
! TAAGTATGACAATAATGACA+CGG + chr3.1:57402585-57402604 None:intergenic 25.0%
! TATTCTTGAGCTATGTAATT+GGG + chr3.1:57402072-57402091 None:intergenic 25.0%
! TCTAATGTATGTATGTCTTT+CGG - chr3.1:57401396-57401415 MS.gene032014:intron 25.0%
! TTATTCTTGAGCTATGTAAT+TGG + chr3.1:57402073-57402092 None:intergenic 25.0%
! TTGATTTATAAGCTCTTCAT+CGG + chr3.1:57400529-57400548 None:intergenic 25.0%
!! AAAGACAAAGAGATTTTCAA+GGG - chr3.1:57401580-57401599 MS.gene032014:intron 25.0%
!! TAAACCAAGAGTTTTCTTTT+GGG - chr3.1:57403471-57403490 MS.gene032014:CDS 25.0%
!!! AAAACATTGGTTTTCTACAA+AGG - chr3.1:57401625-57401644 MS.gene032014:intron 25.0%
AAAATGGATGGTTCAAAACA+TGG - chr3.1:57403074-57403093 MS.gene032014:intron 30.0%
AAATCAATACCTTGTCAAGA+AGG - chr3.1:57400542-57400561 MS.gene032014:CDS 30.0%
AACACAAGGTAATTCTATCT+AGG + chr3.1:57402516-57402535 None:intergenic 30.0%
AATGAACTTTCACATGTAGT+AGG + chr3.1:57401799-57401818 None:intergenic 30.0%
AATTGTGGAAAGAAAATGGA+TGG - chr3.1:57403062-57403081 MS.gene032014:intron 30.0%
ACACAAGGTAATTCTATCTA+GGG + chr3.1:57402515-57402534 None:intergenic 30.0%
ACCATGTGTTTGATAGAATT+AGG - chr3.1:57401836-57401855 MS.gene032014:intron 30.0%
AGATAACGACAATATCTCTA+AGG + chr3.1:57401230-57401249 None:intergenic 30.0%
ATATGAATAAGTGTGAACCA+TGG - chr3.1:57400607-57400626 MS.gene032014:CDS 30.0%
ATGAATTGAAAGAGATGGAA+AGG + chr3.1:57402148-57402167 None:intergenic 30.0%
ATGCAGTGTTTATTTGATTC+AGG + chr3.1:57400956-57400975 None:intergenic 30.0%
CAAAAGAAAACTCTTGGTTT+AGG + chr3.1:57403472-57403491 None:intergenic 30.0%
CATGTGTTTGATAGAATTAG+GGG - chr3.1:57401838-57401857 MS.gene032014:intron 30.0%
CCATGTGTTTGATAGAATTA+GGG - chr3.1:57401837-57401856 MS.gene032014:intron 30.0%
CTAAAATGGGAGAAACAAAA+TGG - chr3.1:57401470-57401489 MS.gene032014:intron 30.0%
CTAAGGTGTAATTAAACCAT+TGG + chr3.1:57401213-57401232 None:intergenic 30.0%
GCAGTTATTACTTCAGATAA+AGG + chr3.1:57403332-57403351 None:intergenic 30.0%
GGATAATTGTGGAAAGAAAA+TGG - chr3.1:57403058-57403077 MS.gene032014:intron 30.0%
TATGAATAAGTGTGAACCAT+GGG - chr3.1:57400608-57400627 MS.gene032014:CDS 30.0%
TATTCATTATTCTTGCGGTT+TGG + chr3.1:57402030-57402049 None:intergenic 30.0%
TCAAGGGAAATGCATTAATT+GGG - chr3.1:57401596-57401615 MS.gene032014:intron 30.0%
TGGAAATGAATTGAAAGAGA+TGG + chr3.1:57402153-57402172 None:intergenic 30.0%
TTCAAGGGAAATGCATTAAT+TGG - chr3.1:57401595-57401614 MS.gene032014:intron 30.0%
TTCATCCTCTTCAAAACAAA+TGG - chr3.1:57403298-57403317 MS.gene032014:intron 30.0%
TTGTCGTTATCTTACTTTGA+TGG - chr3.1:57401238-57401257 MS.gene032014:intron 30.0%
! ATGTTGTCATCTTGTGTTTT+TGG + chr3.1:57403245-57403264 None:intergenic 30.0%
! CAAAGACAAAGAGATTTTCA+AGG - chr3.1:57401579-57401598 MS.gene032014:intron 30.0%
! CTAAACCAAGAGTTTTCTTT+TGG - chr3.1:57403470-57403489 MS.gene032014:CDS 30.0%
! GTCTTTAAGAAGGATAATTG+TGG - chr3.1:57403047-57403066 MS.gene032014:intron 30.0%
! TTTGGTTTCTCTGTTTGATT+TGG + chr3.1:57403227-57403246 None:intergenic 30.0%
!! ACAACTTTTAGAGAAACTAC+TGG - chr3.1:57402808-57402827 MS.gene032014:intron 30.0%
!!! AATGGTATTTTTTCTGTGTG+AGG - chr3.1:57401488-57401507 MS.gene032014:intron 30.0%
!!! ATGGTATTTTTTCTGTGTGA+GGG - chr3.1:57401489-57401508 MS.gene032014:intron 30.0%
!!! GTTTGGTTTTCACTATTGTA+TGG + chr3.1:57403173-57403192 None:intergenic 30.0%
!!! TTTTTTGGTTTATTCAGAGC+TGG - chr3.1:57401447-57401466 MS.gene032014:intron 30.0%
AGAAATCAGAAAGAGTGGTT+TGG + chr3.1:57403190-57403209 None:intergenic 35.0%
ATGAGAGAAATCAGAAAGAG+TGG + chr3.1:57403195-57403214 None:intergenic 35.0%
ATGGAAATGGCATGTTTCAA+AGG - chr3.1:57403528-57403547 MS.gene032014:CDS 35.0%
CAAACAATGTCGTACTAAGA+CGG - chr3.1:57401023-57401042 MS.gene032014:intron 35.0%
CAACACGACACTAATAAATG+TGG - chr3.1:57401314-57401333 MS.gene032014:intron 35.0%
CAATATTACCATTCCATGTG+TGG + chr3.1:57401734-57401753 None:intergenic 35.0%
CACAAGGTAATTCTATCTAG+GGG + chr3.1:57402514-57402533 None:intergenic 35.0%
CACATTTATTAGTGTCGTGT+TGG + chr3.1:57401316-57401335 None:intergenic 35.0%
CCAGATCTAATCAATGACTT+TGG + chr3.1:57400909-57400928 None:intergenic 35.0%
CCCTAATTCTATCAAACACA+TGG + chr3.1:57401840-57401859 None:intergenic 35.0%
GAGTGGTGAAAAAACCAATT+GGG - chr3.1:57401657-57401676 MS.gene032014:intron 35.0%
GATATCTCATCTGTGGTATA+TGG - chr3.1:57403509-57403528 MS.gene032014:CDS 35.0%
GGAATTATAATCGAACCTGA+TGG + chr3.1:57402127-57402146 None:intergenic 35.0%
GTCAAAATTACGGTAACACA+AGG + chr3.1:57402530-57402549 None:intergenic 35.0%
TATTCAGAGCTGGCTAAAAT+GGG - chr3.1:57401457-57401476 MS.gene032014:intron 35.0%
TCATCTGTGGTATATGGAAA+TGG - chr3.1:57403515-57403534 MS.gene032014:CDS 35.0%
TGATTTGAACCAAACCTCAA+TGG - chr3.1:57403352-57403371 MS.gene032014:intron 35.0%
TTATCCAAACCAAACCAATG+CGG + chr3.1:57402391-57402410 None:intergenic 35.0%
TTATTCAGAGCTGGCTAAAA+TGG - chr3.1:57401456-57401475 MS.gene032014:intron 35.0%
TTTATAAGCTCTTCATCGGT+CGG + chr3.1:57400525-57400544 None:intergenic 35.0%
! ATTTGATGGTACTTCTCTAG+AGG + chr3.1:57403111-57403130 None:intergenic 35.0%
! CCAAAGTCATTGATTAGATC+TGG - chr3.1:57400906-57400925 MS.gene032014:CDS 35.0%
! TCTCAGTAGAGTCTTTAAGA+AGG - chr3.1:57403037-57403056 MS.gene032014:intron 35.0%
!! ATTATTCTTGCGGTTTGGTT+TGG + chr3.1:57402025-57402044 None:intergenic 35.0%
!! TGGTTTGCGGTTTTTCTATT+GGG + chr3.1:57401882-57401901 None:intergenic 35.0%
!!! CAATTGGTTTTTTCACCACT+CGG + chr3.1:57401658-57401677 None:intergenic 35.0%
!!! CACATCCATTTGTTTTGAAG+AGG + chr3.1:57403306-57403325 None:intergenic 35.0%
!!! GTTTTTCTATTGGGTTGGTT+CGG + chr3.1:57401873-57401892 None:intergenic 35.0%
!!! TTGGTTTGCGGTTTTTCTAT+TGG + chr3.1:57401883-57401902 None:intergenic 35.0%
ACAGATCCTCGATGAATGTT+TGG + chr3.1:57402616-57402635 None:intergenic 40.0%
ACCAATAGAGCTACTAATGC+TGG - chr3.1:57401538-57401557 MS.gene032014:intron 40.0%
ATGTGGTCAATGATAGCTTG+TGG - chr3.1:57403591-57403610 MS.gene032014:CDS 40.0%
CAGTTGGAGAATGAGAATCT+TGG - chr3.1:57403428-57403447 MS.gene032014:CDS 40.0%
CATCGATGTTACAGATCTCT+AGG + chr3.1:57400883-57400902 None:intergenic 40.0%
CGAGTGGTGAAAAAACCAAT+TGG - chr3.1:57401656-57401675 MS.gene032014:intron 40.0%
CTCAAGAACAATCACTGTTG+AGG - chr3.1:57403402-57403421 MS.gene032014:intron 40.0%
CTCTCCCAAAAGAAAACTCT+TGG + chr3.1:57403478-57403497 None:intergenic 40.0%
GAAATGGCATGTTTCAAAGG+TGG - chr3.1:57403531-57403550 MS.gene032014:CDS 40.0%
GGGTGGAAAAAGAAGAAAAG+TGG - chr3.1:57401158-57401177 MS.gene032014:intron 40.0%
GTATTCATGCATGACCCAAT+TGG + chr3.1:57401674-57401693 None:intergenic 40.0%
TGATGCTGATATCTCATCTG+TGG - chr3.1:57403502-57403521 MS.gene032014:CDS 40.0%
TGGATGGTTCAAAACATGGA+AGG - chr3.1:57403078-57403097 MS.gene032014:intron 40.0%
TGTCATCAACCTTCTTGACA+AGG + chr3.1:57400554-57400573 None:intergenic 40.0%
TGTTACAGATCTCTAGGCAT+CGG + chr3.1:57400877-57400896 None:intergenic 40.0%
TTACCATTCCATGTGTGGAT+AGG + chr3.1:57401729-57401748 None:intergenic 40.0%
TTGAACCAAACCTCAATGGT+CGG - chr3.1:57403356-57403375 MS.gene032014:intron 40.0%
! AAGAAAAGTGGTGACGACTA+GGG - chr3.1:57401170-57401189 MS.gene032014:intron 40.0%
! ACAATTTGGAATGGTGCGTT+TGG - chr3.1:57401120-57401139 MS.gene032014:intron 40.0%
! CAATTTGGAATGGTGCGTTT+GGG - chr3.1:57401121-57401140 MS.gene032014:intron 40.0%
! GAGATAAAAAGCATGCGGTT+TGG + chr3.1:57402439-57402458 None:intergenic 40.0%
! GTCATTGATTAGATCTGGAC+TGG - chr3.1:57400911-57400930 MS.gene032014:CDS 40.0%
! TAGTAGCTCTATTGGTCCTT+TGG + chr3.1:57401534-57401553 None:intergenic 40.0%
! TTATTAGTGTCGTGTTGGTG+CGG + chr3.1:57401311-57401330 None:intergenic 40.0%
! TTGCGGTTTTTCTATTGGGT+TGG + chr3.1:57401878-57401897 None:intergenic 40.0%
! TTGGTTTAGGCTTTGTCTTG+AGG + chr3.1:57403459-57403478 None:intergenic 40.0%
! TTTGGGACATTGGTAGATCT+GGG - chr3.1:57401138-57401157 MS.gene032014:intron 40.0%
!! AAAAAGCATGCGGTTTGGTT+TGG + chr3.1:57402434-57402453 None:intergenic 40.0%
!! ATGCTTTTTATCTCGCGGTT+TGG - chr3.1:57402445-57402464 MS.gene032014:CDS 40.0%
!! GTTTGGTTTGGTTTGGTTTG+CGG + chr3.1:57401895-57401914 None:intergenic 40.0%
AAACCGCAAAAAACCGCACT+TGG - chr3.1:57401917-57401936 MS.gene032014:intron 45.0%
AATTCACCTGGCAAATCCCA+TGG + chr3.1:57400627-57400646 None:intergenic 45.0%
AATTCCCGACCATTGAGGTT+TGG + chr3.1:57403364-57403383 None:intergenic 45.0%
AGGGAGAGAAAATACCCAAC+TGG - chr3.1:57401508-57401527 MS.gene032014:intron 45.0%
ATCACTGTTGAGGATGCAGT+TGG - chr3.1:57403412-57403431 MS.gene032014:intron 45.0%
ATTGACCACATGTCCAGTAG+AGG + chr3.1:57403582-57403601 None:intergenic 45.0%
CAAACCAAACCAATGCGGTT+TGG + chr3.1:57402386-57402405 None:intergenic 45.0%
CAACCTATCCACACATGGAA+TGG - chr3.1:57401723-57401742 MS.gene032014:intron 45.0%
CTATGTACCACCGACACATA+AGG - chr3.1:57401282-57401301 MS.gene032014:intron 45.0%
GAAAAGGTCAAATTTCCGGC+TGG - chr3.1:57400486-57400505 MS.gene032014:CDS 45.0%
GAAAATACCCAACTGGCCAA+AGG - chr3.1:57401515-57401534 MS.gene032014:intron 45.0%
GAATTCATCCGAACCAAGTG+CGG + chr3.1:57401933-57401952 None:intergenic 45.0%
GAATTGTCATCAGCCTCTAC+TGG - chr3.1:57403566-57403585 MS.gene032014:CDS 45.0%
GCAAAAAACCGCACTTGGTT+CGG - chr3.1:57401922-57401941 MS.gene032014:intron 45.0%
GCATGTTTCAAAGGTGGTCT+GGG - chr3.1:57403537-57403556 MS.gene032014:CDS 45.0%
GGATTTGAAAAGCTACGCCT+TGG - chr3.1:57400700-57400719 MS.gene032014:CDS 45.0%
GGTCATGCATGAATACCGAT+TGG - chr3.1:57401678-57401697 MS.gene032014:intron 45.0%
GTCGATCCAAACATTCATCG+AGG - chr3.1:57402607-57402626 MS.gene032014:intron 45.0%
TATTGGTCCTTTGGCCAGTT+GGG + chr3.1:57401525-57401544 None:intergenic 45.0%
TGAACCAAACCTCAATGGTC+GGG - chr3.1:57403357-57403376 MS.gene032014:intron 45.0%
! ACCGCGAGATAAAAAGCATG+CGG + chr3.1:57402444-57402463 None:intergenic 45.0%
! ATGCATGAATACCGATTGGC+GGG - chr3.1:57401682-57401701 MS.gene032014:intron 45.0%
! CAAACCAATGCGGTTTGGAT+TGG + chr3.1:57402381-57402400 None:intergenic 45.0%
! CATGCATGAATACCGATTGG+CGG - chr3.1:57401681-57401700 MS.gene032014:intron 45.0%
! GAAGAAAAGTGGTGACGACT+AGG - chr3.1:57401169-57401188 MS.gene032014:intron 45.0%
! GAGCTACTAATGCTGGCTAT+TGG - chr3.1:57401545-57401564 MS.gene032014:intron 45.0%
! GCCAGCATTAGTAGCTCTAT+TGG + chr3.1:57401542-57401561 None:intergenic 45.0%
! GTTTGGGACATTGGTAGATC+TGG - chr3.1:57401137-57401156 MS.gene032014:intron 45.0%
! TTTTCCATCGTTGCACCATC+AGG - chr3.1:57402109-57402128 MS.gene032014:intron 45.0%
!! ACCGCATGCTTTTTATCTCG+CGG - chr3.1:57402440-57402459 MS.gene032014:CDS 45.0%
!! ATTCTATCTAGGGGTGTTCG+CGG + chr3.1:57402505-57402524 None:intergenic 45.0%
!! CAAACCGCATTGGTTTGGTT+TGG - chr3.1:57402384-57402403 MS.gene032014:CDS 45.0%
!! CAATCCAAACCGCATTGGTT+TGG - chr3.1:57402379-57402398 MS.gene032014:CDS 45.0%
!! CAATGCGGTTTGGATTGGTT+CGG + chr3.1:57402376-57402395 None:intergenic 45.0%
!! CGGTTTGGTTTGGTTTGGTT+CGG + chr3.1:57401897-57401916 None:intergenic 45.0%
!! GCACTTGGTTCGGATGAATT+CGG - chr3.1:57401932-57401951 MS.gene032014:intron 45.0%
!! GGTTTCGGTTTGGTTTGGTT+TGG + chr3.1:57401902-57401921 None:intergenic 45.0%
!! TCTTGCGGTTTGGTTTGGTT+TGG + chr3.1:57402020-57402039 None:intergenic 45.0%
!! TTGGATTGGTTCGGTTTGTG+CGG + chr3.1:57402367-57402386 None:intergenic 45.0%
!! TTTGCGGTTTCGGTTTGGTT+TGG + chr3.1:57401907-57401926 None:intergenic 45.0%
!!! AGTGCGGTTTTTTGCGGTTT+CGG + chr3.1:57401917-57401936 None:intergenic 45.0%
!!! GAACCAAGTGCGGTTTTTTG+CGG + chr3.1:57401923-57401942 None:intergenic 45.0%
!!! GGTTTTTTGCGGTTTCGGTT+TGG + chr3.1:57401912-57401931 None:intergenic 45.0%
AGAGTGTGTTACCCGCCAAT+CGG + chr3.1:57401696-57401715 None:intergenic 50.0%
ATCAGCCTCTACTGGACATG+TGG - chr3.1:57403574-57403593 MS.gene032014:CDS 50.0%
CGAACCAATCCAAACCGCAT+TGG - chr3.1:57402374-57402393 MS.gene032014:CDS 50.0%
CTAGGGTTTGGCAAGGAGAA+AGG - chr3.1:57401187-57401206 MS.gene032014:intron 50.0%
CTATTGGTCCTTTGGCCAGT+TGG + chr3.1:57401526-57401545 None:intergenic 50.0%
GAGCACAACCTATCCACACA+TGG - chr3.1:57401718-57401737 MS.gene032014:intron 50.0%
GCTGGCTATTGGAAAGCAAC+AGG - chr3.1:57401556-57401575 MS.gene032014:intron 50.0%
GGAGAGAATCGATAACCAGC+CGG + chr3.1:57400504-57400523 None:intergenic 50.0%
GGCATGTTTCAAAGGTGGTC+TGG - chr3.1:57403536-57403555 MS.gene032014:CDS 50.0%
GGTGCGGTTACCTTATGTGT+CGG + chr3.1:57401295-57401314 None:intergenic 50.0%
TGACGAATTCCCGACCATTG+AGG + chr3.1:57403369-57403388 None:intergenic 50.0%
TGTGAACCATGGGATTTGCC+AGG - chr3.1:57400618-57400637 MS.gene032014:CDS 50.0%
TTGGCAAGGAGAAAGGCCAA+TGG - chr3.1:57401194-57401213 MS.gene032014:intron 50.0%
! AAGTGGTGACGACTAGGGTT+TGG - chr3.1:57401175-57401194 MS.gene032014:intron 50.0%
! GAATGGTGCGTTTGGGACAT+TGG - chr3.1:57401128-57401147 MS.gene032014:intron 50.0%
! GACTTTTGCACTGAACAGCG+CGG - chr3.1:57401957-57401976 MS.gene032014:intron 50.0%
!! GCATGCGGTTTGGTTTGGTT+CGG + chr3.1:57402429-57402448 None:intergenic 50.0%
GCGGTTACCTTATGTGTCGG+TGG + chr3.1:57401292-57401311 None:intergenic 55.0%
GGGACATTGGTAGATCTGGG+TGG - chr3.1:57401141-57401160 MS.gene032014:intron 55.0%
GTGACGACTAGGGTTTGGCA+AGG - chr3.1:57401180-57401199 MS.gene032014:intron 55.0%
TTGCACTGAACAGCGCGGTT+CGG - chr3.1:57401962-57401981 MS.gene032014:intron 55.0%
! CGAACCTGATGGTGCAACGA+TGG + chr3.1:57402116-57402135 None:intergenic 55.0%
!! TACAAAGGAAGAGCGCCGAG+TGG - chr3.1:57401640-57401659 MS.gene032014:intron 55.0%
!! ATCTAGGGGTGTTCGCGGTG+CGG + chr3.1:57402500-57402519 None:intergenic 60.0%
!! CTGAACAGCGCGGTTCGGTT+CGG - chr3.1:57401967-57401986 MS.gene032014:intron 60.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG + chr3.1:57402490-57402509 None:intergenic 60.0%
!! GCGCGGTTCGGTTCGGTTTG+CGG - chr3.1:57401974-57401993 MS.gene032014:intron 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + chr3.1:57402495-57402514 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 57400444 57403622 57400444 ID=MS.gene032014
chr3.1 mRNA 57400444 57403622 57400444 ID=MS.gene032014.t1;Parent=MS.gene032014
chr3.1 exon 57403427 57403622 57403427 ID=MS.gene032014.t1.exon1;Parent=MS.gene032014.t1
chr3.1 CDS 57403427 57403622 57403427 ID=cds.MS.gene032014.t1;Parent=MS.gene032014.t1
chr3.1 exon 57402322 57402602 57402322 ID=MS.gene032014.t1.exon2;Parent=MS.gene032014.t1
chr3.1 CDS 57402322 57402602 57402322 ID=cds.MS.gene032014.t1;Parent=MS.gene032014.t1
chr3.1 exon 57400444 57401040 57400444 ID=MS.gene032014.t1.exon3;Parent=MS.gene032014.t1
chr3.1 CDS 57400444 57401040 57400444 ID=cds.MS.gene032014.t1;Parent=MS.gene032014.t1
Gene Sequence

>MS.gene032014

ATGGGATCAAATGAGAATGTTTACAATCAAAAAATGGAAAATGAAAAGGTCAAATTTCCGGCTGGTTATCGATTCTCTCCGACCGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAATTTCTGTGCTATAGATATTGCTGAAGTTGATATGAATAAGTGTGAACCATGGGATTTGCCAGGTGAATTTATTGTTTTTTTGTAAGTAAATATTAGTTGTTATTATATTATATTAGTAGTCTGGATTTGAAAAGCTACGCCTTGGAGTTTTTTTTTTTTTTAAATAAACGATGTTGATAGAACATTTATAACACATACATTTAAAGACATTAAAAACTAAAGGGGTGATGCATTTGCGAAAAGAACAACAAAATACAATAGTCTACAAATATGACTACATTCAAGTGTAAAAAAAACCGATGCCTAGAGATCTGTAACATCGATGACGCCAAAGTCATTGATTAGATCTGGACTGGATCAAAGCTAATCTTTCAACCTGAATCAAATAAACACTGCATTAAGATGAAAAATCAAGAAAACACTATTCAAGAACGAGAAATCATAACAAACAATGTCGTACTAAGACGGTGAAATCATAAAAACCTACCAAAGAAGACTTAATTTATGTGGAAATCACTTATATAACCAAAATAGAAAGAAAAACAATTTGGAATGGTGCGTTTGGGACATTGGTAGATCTGGGTGGAAAAAGAAGAAAAGTGGTGACGACTAGGGTTTGGCAAGGAGAAAGGCCAATGGTTTAATTACACCTTAGAGATATTGTCGTTATCTTACTTTGATGGTTATATATTTTCTCTTAATTACTATGTACCACCGACACATAAGGTAACCGCACCAACACGACACTAATAAATGTGGTTAGATTTAATTATTTTATTTTTTAAAGTTATTATGAGTGCGGATCTGTCAGTGTTATGTCTAATGTATGTATGTCTTTCGGTGTTTCATAACTTACTTATGCTTTCTTATTTTTTGGTTTATTCAGAGCTGGCTAAAATGGGAGAAACAAAATGGTATTTTTTCTGTGTGAGGGAGAGAAAATACCCAACTGGCCAAAGGACCAATAGAGCTACTAATGCTGGCTATTGGAAAGCAACAGGCAAAGACAAAGAGATTTTCAAGGGAAATGCATTAATTGGGATGAAAAAAACATTGGTTTTCTACAAAGGAAGAGCGCCGAGTGGTGAAAAAACCAATTGGGTCATGCATGAATACCGATTGGCGGGTAACACACTCTCTGAGCACAACCTATCCACACATGGAATGGTAATATTGCTATATTTTTTTATTGCTTTGTTTTTGTCTATGATTTCTACTCCTACTACATGTGAAAGTTCATTAGTGTATGTTCACATTGACCATGTGTTTGATAGAATTAGGGGTGTTCAAAACCGAACCAACCCAATAGAAAAACCGCAAACCAAACCAAACCAAACCGAAACCGCAAAAAACCGCACTTGGTTCGGATGAATTCGGATGACTTTTGCACTGAACAGCGCGGTTCGGTTCGGTTTGCGGTTTGCATCTCAGCAACCGAACCAAACCAAACCAAACCGCAAGAATAATGAATATTACTTAAATATGTACTAGCCCAATTACATAGCTCAAGAATAATCTCTTTTGATTCGATTTTTCCATCGTTGCACCATCAGGTTCGATTATAATTCCTTTCCATCTCTTTCAATTCATTTCCAGTGATGAATTTGTTTTCTTTACTTCCCAATAATTTGTTTCATGCTTATGTTTCTTCTTAATTTTACCTATTTTGATATAAGTTTTACCTAATATTTTATCATATAAACATCAAAATAAAATGTCCTATGTTTATTTTGTAACAAGTTGACAATATTAGAGTTAATGTAATATTTTTTTATCTCGCGATAAACCGCACAAACCGAACCAATCCAAACCGCATTGGTTTGGTTTGGATAACTTTTTAAAAATCAACCGAACCAAACCAAACCGCATGCTTTTTATCTCGCGGTTTGGATGACTTTTTTGCTCAAAACCGAACCAAACCGCACCGCGAACACCCCTAGATAGAATTACCTTGTGTTACCGTAATTTTGACAAAAACTTTACTTTTGAATTTTGACAAAACTACCGTGTCATTATTGTCATACTTATCGTCGATCCAAACATTCATCGAGGATCTGTTTGTAATAAATAATACAAATAGTGATTTTGATTTTTTTTAGGGAAATAGTGATTTTGATATATATAATTAAGAGATTAATTTCCTTTTTCTAAATAAAGTAAATTATTTCATGTTTGATTGCAATCATAAAAATAAAATAAAAAAACTTTTATAAAAAATCAATTAAAAAATACAACTTTTAGAGAAACTACTGGAAACAACTTTTTGTTTGAAGCAGATTTAATATTCTTTCAAATAGAATTAAAAAAACTGTAATAAATGAATAAAAACTAAAAAAAAAGATTGTTTTGTTTAAAATAACGTTTTTTTCATCTAATATTTTTTTTTAACAAATTTTTTCATCTAATATTAATGTGTTAACCTTTTTTTTTTTTTTTTTTTTTTTATAGAGTGAATGGGTTCTCAGTAGAGTCTTTAAGAAGGATAATTGTGGAAAGAAAATGGATGGTTCAAAACATGGAAGGTTTAACTCCTCTAGAGAAGTACCATCAAATACTAATGAATCTCTATTGTCTACATTATTGGATTCTTCTCCATACAATAGTGAAAACCAAACCACTCTTTCTGATTTCTCTCATGTGTTCAATCCAAATCAAACAGAGAAACCAAAAACACAAGATGACAACATTGTTCATAACAATGAAACTAGTATCTTGAACATTTCATCCTCTTCAAAACAAATGGATGTGTATCCTTTATCTGAAGTAATAACTGCTGATTTGAACCAAACCTCAATGGTCGGGAATTCGTCAAACTTTTTCTTCTCTCAAGAACAATCACTGTTGAGGATGCAGTTGGAGAATGAGAATCTTGGAACAACCTCAAGACAAAGCCTAAACCAAGAGTTTTCTTTTGGGAGAGACACTGATGCTGATATCTCATCTGTGGTATATGGAAATGGCATGTTTCAAAGGTGGTCTGGGAATCAAGAATTGTCATCAGCCTCTACTGGACATGTGGTCAATGATAGCTTGTGGAATGTCTGA
Protein sequence

>MS.gene032014.t1

MGSNENVYNQKMENEKVKFPAGYRFSPTDEELINQYLVKKVDDNNFCAIDIAEVDMNKCEPWDLPELAKMGETKWYFFCVRERKYPTGQRTNRATNAGYWKATGKDKEIFKGNALIGMKKTLVFYKGRAPSGEKTNWVMHEYRLAGNTLSEHNLSTHGMSEWVLSRVFKKDNCGKKMDGSKHGRFNSSREVPSNTNESLLSTLLDSSPYNSENQTTLSDFSHVFNPNQTEKPKTQDDNIVHNNETSILNISSSSKQMDVYPLSEVITADLNQTSMVGNSSNFFFSQEQSLLRMQLENENLGTTSRQSLNQEFSFGRDTDADISSVVYGNGMFQRWSGNQELSSASTGHVVNDSLWNV