Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03211.t1 | XP_003602063.1 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 7.60E-187 | 662.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03211.t1 | Q9XHZ8 | 68.1 | 323 | 101 | 2 | 4 | 326 | 5 | 325 | 2.4e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03211.t1 | G7J501 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 5.5e-187 | 662.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03211.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03211.t1 | MTR_3g088560 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| MS.gene03211.t1 | MTR_3g088560 | 97.951 | 244 | 5 | 0 | 84 | 327 | 14 | 257 | 3.29e-180 | 498 |
| MS.gene03211.t1 | MTR_3g088560 | 98.347 | 242 | 4 | 0 | 86 | 327 | 31 | 272 | 4.47e-179 | 496 |
| MS.gene03211.t1 | MTR_1g029850 | 73.171 | 328 | 81 | 4 | 1 | 323 | 1 | 326 | 4.23e-175 | 488 |
| MS.gene03211.t1 | MTR_3g088560 | 98.537 | 205 | 3 | 0 | 123 | 327 | 1 | 205 | 1.78e-150 | 421 |
| MS.gene03211.t1 | MTR_3g061090 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 1.25e-115 | 337 |
| MS.gene03211.t1 | MTR_5g096700 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 1.11e-96 | 289 |
| MS.gene03211.t1 | MTR_3g061090 | 50.598 | 251 | 121 | 3 | 72 | 321 | 4 | 252 | 1.96e-81 | 248 |
| MS.gene03211.t1 | MTR_5g096700 | 45.896 | 268 | 140 | 4 | 56 | 321 | 2 | 266 | 8.05e-74 | 229 |
| MS.gene03211.t1 | MTR_5g096790 | 36.747 | 332 | 178 | 11 | 5 | 321 | 8 | 322 | 7.80e-56 | 184 |
| MS.gene03211.t1 | MTR_7g094900 | 31.298 | 131 | 85 | 2 | 161 | 289 | 545 | 672 | 5.37e-12 | 67.0 |
| MS.gene03211.t1 | MTR_7g094910 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 7.64e-12 | 66.6 |
| MS.gene03211.t1 | MTR_3g088660 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 7.64e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03211.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.36e-163 | 459 |
| MS.gene03211.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.36e-163 | 459 |
| MS.gene03211.t1 | AT1G55760 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 8.93e-111 | 325 |
| MS.gene03211.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.01e-14 | 73.6 |
| MS.gene03211.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.08e-14 | 73.6 |
| MS.gene03211.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.08e-14 | 73.6 |
| MS.gene03211.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.81e-14 | 73.2 |
| MS.gene03211.t1 | AT5G13060 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.06e-11 | 64.7 |
| MS.gene03211.t1 | AT3G56230 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.63e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3.3:-73732180 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3.3:+73732054 | MS.gene03211:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3.3:-73729506 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3.3:-73732113 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3.3:+73729508 | MS.gene03211:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3.3:-73730996 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3.3:+73731869 | MS.gene03211:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3.3:+73729339 | MS.gene03211:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3.3:-73731810 | None:intergenic |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3.3:+73732125 | MS.gene03211:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3.3:+73729554 | MS.gene03211:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3.3:-73732179 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3.3:+73729247 | None:intergenic |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3.3:+73729584 | MS.gene03211:CDS |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3.3:-73729512 | None:intergenic |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3.3:+73731916 | MS.gene03211:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3.3:+73730942 | MS.gene03211:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3.3:+73730899 | MS.gene03211:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3.3:-73731746 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3.3:+73731844 | MS.gene03211:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3.3:+73730920 | MS.gene03211:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3.3:+73731892 | MS.gene03211:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3.3:-73731986 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3.3:-73731966 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3.3:-73731654 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3.3:-73732175 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3.3:-73729582 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3.3:-73729539 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3.3:-73731008 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3.3:+73731998 | MS.gene03211:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3.3:-73731648 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3.3:+73732027 | MS.gene03211:CDS |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3.3:+73729345 | MS.gene03211:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3.3:+73729332 | MS.gene03211:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3.3:+73729246 | None:intergenic |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3.3:-73731690 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3.3:-73731836 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3.3:+73731993 | MS.gene03211:CDS |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3.3:-73729341 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3.3:+73731919 | MS.gene03211:CDS |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3.3:+73731589 | MS.gene03211:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3.3:+73730890 | MS.gene03211:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3.3:+73730943 | MS.gene03211:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3.3:+73731578 | MS.gene03211:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3.3:-73731586 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3.3:-73731707 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3.3:-73731695 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3.3:+73731711 | MS.gene03211:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3.3:-73731659 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3.3:-73730966 | None:intergenic |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3.3:-73731754 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3.3:-73731660 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3.3:+73731654 | MS.gene03211:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3.3:+73731691 | MS.gene03211:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3.3:+73729293 | MS.gene03211:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3.3:+73731768 | MS.gene03211:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3.3:-73729583 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3.3:-73729536 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3.3:-73729255 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3.3:-73729540 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3.3:-73729535 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3.3:+73729276 | MS.gene03211:CDS |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3.3:-73729567 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3.3:+73731939 | MS.gene03211:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3.3:73731416-73731435 | None:intergenic | 10.0% |
| !! | TTTGTATAAATGTGATAAAA+CGG | + | chr3.3:73729676-73729695 | MS.gene03211:intron | 15.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | + | chr3.3:73729714-73729733 | MS.gene03211:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3.3:73732054-73732073 | MS.gene03211:CDS | 15.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | - | chr3.3:73731380-73731399 | None:intergenic | 20.0% |
| !!! | CAATTCGTTTTTTTTTTTTC+AGG | + | chr3.3:73729438-73729457 | MS.gene03211:intron | 20.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3.3:73730629-73730648 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | - | chr3.3:73730221-73730240 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3.3:73731251-73731270 | MS.gene03211:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3.3:73730105-73730124 | MS.gene03211:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | - | chr3.3:73730220-73730239 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3.3:73730508-73730527 | None:intergenic | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3.3:73731252-73731271 | MS.gene03211:intron | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3.3:73731011-73731030 | None:intergenic | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3.3:73731869-73731888 | MS.gene03211:CDS | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3.3:73730423-73730442 | MS.gene03211:intron | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3.3:73729743-73729762 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3.3:73731035-73731054 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | - | chr3.3:73730457-73730476 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3.3:73731047-73731066 | MS.gene03211:intron | 25.0% |
| !! | AACAAAAAACGAAAAAGTGT+TGG | - | chr3.3:73729625-73729644 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3.3:73729462-73729481 | MS.gene03211:CDS | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3.3:73731196-73731215 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | + | chr3.3:73729764-73729783 | MS.gene03211:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3.3:73730363-73730382 | MS.gene03211:intron | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3.3:73730362-73730381 | MS.gene03211:intron | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3.3:73730545-73730564 | MS.gene03211:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3.3:73730435-73730454 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | - | chr3.3:73729320-73729339 | None:intergenic | 25.0% |
| AAAACGGTAAAGTTTGTGTA+TGG | + | chr3.3:73729692-73729711 | MS.gene03211:intron | 30.0% | |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3.3:73731259-73731278 | MS.gene03211:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3.3:73731116-73731135 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3.3:73731050-73731069 | MS.gene03211:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3.3:73731307-73731326 | MS.gene03211:intron | 30.0% | |
| AATTATAGCAATTATTCCCG+AGG | + | chr3.3:73731428-73731447 | MS.gene03211:intron | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3.3:73730743-73730762 | None:intergenic | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3.3:73730855-73730874 | MS.gene03211:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3.3:73731308-73731327 | MS.gene03211:intron | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3.3:73730136-73730155 | MS.gene03211:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3.3:73729923-73729942 | None:intergenic | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3.3:73730969-73730988 | None:intergenic | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3.3:73730630-73730649 | None:intergenic | 30.0% | |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3.3:73729293-73729312 | MS.gene03211:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3.3:73732027-73732046 | MS.gene03211:CDS | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3.3:73730999-73731018 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3.3:73730104-73730123 | None:intergenic | 30.0% | |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3.3:73731916-73731935 | MS.gene03211:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3.3:73731919-73731938 | MS.gene03211:CDS | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3.3:73730567-73730586 | MS.gene03211:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3.3:73731299-73731318 | MS.gene03211:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | - | chr3.3:73730466-73730485 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3.3:73730757-73730776 | MS.gene03211:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3.3:73730785-73730804 | MS.gene03211:intron | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3.3:73730560-73730579 | None:intergenic | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3.3:73730819-73730838 | MS.gene03211:intron | 30.0% | |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3.3:73731556-73731575 | MS.gene03211:intron | 30.0% |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3.3:73729456-73729475 | MS.gene03211:intron | 30.0% |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3.3:73731555-73731574 | MS.gene03211:intron | 30.0% |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3.3:73731234-73731253 | MS.gene03211:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3.3:73729509-73729528 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3.3:73729508-73729527 | MS.gene03211:CDS | 30.0% |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | - | chr3.3:73731372-73731391 | None:intergenic | 30.0% |
| AAAATATGATACCAGTGCAG+AGG | - | chr3.3:73731521-73731540 | None:intergenic | 35.0% | |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3.3:73729332-73729351 | MS.gene03211:CDS | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3.3:73730876-73730895 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3.3:73730826-73730845 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3.3:73729585-73729604 | None:intergenic | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | - | chr3.3:73731362-73731381 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3.3:73731589-73731608 | MS.gene03211:CDS | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3.3:73730800-73730819 | None:intergenic | 35.0% | |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3.3:73731813-73731832 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3.3:73729586-73729605 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3.3:73729892-73729911 | None:intergenic | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3.3:73731969-73731988 | None:intergenic | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3.3:73731205-73731224 | MS.gene03211:intron | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3.3:73731138-73731157 | MS.gene03211:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3.3:73730703-73730722 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3.3:73730890-73730909 | MS.gene03211:intron | 35.0% | |
| GGCTATAGGAAAATAACACA+TGG | + | chr3.3:73729988-73730007 | MS.gene03211:intron | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3.3:73731057-73731076 | None:intergenic | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3.3:73730047-73730066 | MS.gene03211:intron | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3.3:73731989-73732008 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3.3:73731589-73731608 | None:intergenic | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | + | chr3.3:73730943-73730962 | MS.gene03211:CDS | 35.0% | |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3.3:73730651-73730670 | MS.gene03211:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3.3:73731186-73731205 | MS.gene03211:intron | 35.0% | |
| TGCTCCTTAGAAACTTTAGA+AGG | - | chr3.3:73729515-73729534 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3.3:73731939-73731958 | MS.gene03211:CDS | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | - | chr3.3:73729605-73729624 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3.3:73731993-73732012 | MS.gene03211:CDS | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3.3:73730690-73730709 | MS.gene03211:intron | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3.3:73730704-73730723 | MS.gene03211:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3.3:73730749-73730768 | MS.gene03211:intron | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3.3:73729890-73729909 | MS.gene03211:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3.3:73729953-73729972 | MS.gene03211:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3.3:73729984-73730003 | None:intergenic | 35.0% |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3.3:73729495-73729514 | None:intergenic | 35.0% |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3.3:73730146-73730165 | MS.gene03211:intron | 35.0% |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3.3:73731757-73731776 | None:intergenic | 35.0% |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3.3:73731892-73731911 | MS.gene03211:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3.3:73731152-73731171 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3.3:73730011-73730030 | MS.gene03211:intron | 40.0% | |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3.3:73729880-73729899 | None:intergenic | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3.3:73729543-73729562 | None:intergenic | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3.3:73730012-73730031 | MS.gene03211:intron | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3.3:73730735-73730754 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | - | chr3.3:73731496-73731515 | None:intergenic | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3.3:73730899-73730918 | MS.gene03211:intron | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3.3:73730794-73730813 | MS.gene03211:intron | 40.0% | |
| CATGTTTCATCACAACCTGA+AGG | + | chr3.3:73731768-73731787 | MS.gene03211:CDS | 40.0% | |
| CTATTCAAGAGATCATCCTC+GGG | - | chr3.3:73731447-73731466 | None:intergenic | 40.0% | |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3.3:73729276-73729295 | MS.gene03211:CDS | 40.0% | |
| GCTATTCAAGAGATCATCCT+CGG | - | chr3.3:73731448-73731467 | None:intergenic | 40.0% | |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3.3:73731844-73731863 | MS.gene03211:CDS | 40.0% | |
| GGATCGACTATAGTGATCTT+AGG | + | chr3.3:73730672-73730691 | MS.gene03211:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | + | chr3.3:73730942-73730961 | MS.gene03211:CDS | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | - | chr3.3:73731361-73731380 | None:intergenic | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3.3:73730065-73730084 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | - | chr3.3:73731497-73731516 | None:intergenic | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | - | chr3.3:73730734-73730753 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3.3:73730064-73730083 | MS.gene03211:intron | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3.3:73731998-73732017 | MS.gene03211:CDS | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3.3:73729584-73729603 | MS.gene03211:CDS | 40.0% |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3.3:73731559-73731578 | MS.gene03211:intron | 40.0% |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3.3:73730145-73730164 | MS.gene03211:intron | 40.0% |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3.3:73731786-73731805 | None:intergenic | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3.3:73731578-73731597 | MS.gene03211:CDS | 40.0% |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3.3:73729868-73729887 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3.3:73729877-73729896 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | - | chr3.3:73730207-73730226 | None:intergenic | 45.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3.3:73729339-73729358 | MS.gene03211:CDS | 45.0% | |
| CAATGATCAAGGAAGACAGG+GGG | - | chr3.3:73730732-73730751 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3.3:73729542-73729561 | None:intergenic | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | - | chr3.3:73731093-73731112 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | - | chr3.3:73730208-73730227 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | - | chr3.3:73730733-73730752 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3.3:73730920-73730939 | MS.gene03211:CDS | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3.3:73730186-73730205 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3.3:73730187-73730206 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3.3:73731710-73731729 | None:intergenic | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3.3:73730025-73730044 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3.3:73729869-73729888 | None:intergenic | 45.0% | |
| TCCATATGGATCAGCCATGT+GGG | + | chr3.3:73729967-73729986 | MS.gene03211:intron | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3.3:73731711-73731730 | MS.gene03211:CDS | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3.3:73730178-73730197 | MS.gene03211:intron | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3.3:73729344-73729363 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3.3:73730661-73730680 | None:intergenic | 45.0% |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3.3:73729944-73729963 | MS.gene03211:intron | 45.0% |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3.3:73731749-73731768 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3.3:73732112-73732131 | MS.gene03211:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3.3:73732113-73732132 | MS.gene03211:CDS | 45.0% |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3.3:73729539-73729558 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3.3:73729865-73729884 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3.3:73731693-73731712 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3.3:73732116-73732135 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3.3:73732125-73732144 | MS.gene03211:CDS | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3.3:73731691-73731710 | MS.gene03211:CDS | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3.3:73730179-73730198 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3.3:73730177-73730196 | MS.gene03211:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | + | chr3.3:73730190-73730209 | MS.gene03211:intron | 50.0% | |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3.3:73729538-73729557 | None:intergenic | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | - | chr3.3:73731094-73731113 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3.3:73731839-73731858 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3.3:73731663-73731682 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3.3:73729966-73729985 | MS.gene03211:intron | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3.3:73731662-73731681 | None:intergenic | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3.3:73731698-73731717 | None:intergenic | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3.3:73729345-73729364 | MS.gene03211:CDS | 50.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3.3:73730073-73730092 | MS.gene03211:intron | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | + | chr3.3:73729554-73729573 | MS.gene03211:CDS | 55.0% | |
| CTGACACTGAACCTCTGCAC+TGG | + | chr3.3:73731507-73731526 | MS.gene03211:intron | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3.3:73729971-73729990 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3.3:73729974-73729993 | MS.gene03211:intron | 55.0% |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3.3:73730084-73730103 | None:intergenic | 60.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | - | chr3.3:73729570-73729589 | None:intergenic | 60.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3.3:73731657-73731676 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3.3:73731654-73731673 | MS.gene03211:CDS | 65.0% | |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3.3:73731651-73731670 | None:intergenic | 65.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3.3:73729856-73729875 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | - | chr3.3:73730725-73730744 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73729257 | 73732188 | 73729257 | ID=MS.gene03211 |
| chr3.3 | mRNA | 73729257 | 73732188 | 73729257 | ID=MS.gene03211.t1;Parent=MS.gene03211 |
| chr3.3 | exon | 73729257 | 73729366 | 73729257 | ID=MS.gene03211.t1.exon1;Parent=MS.gene03211.t1 |
| chr3.3 | CDS | 73729257 | 73729366 | 73729257 | ID=cds.MS.gene03211.t1;Parent=MS.gene03211.t1 |
| chr3.3 | exon | 73729460 | 73729605 | 73729460 | ID=MS.gene03211.t1.exon2;Parent=MS.gene03211.t1 |
| chr3.3 | CDS | 73729460 | 73729605 | 73729460 | ID=cds.MS.gene03211.t1;Parent=MS.gene03211.t1 |
| chr3.3 | exon | 73730902 | 73731017 | 73730902 | ID=MS.gene03211.t1.exon3;Parent=MS.gene03211.t1 |
| chr3.3 | CDS | 73730902 | 73731017 | 73730902 | ID=cds.MS.gene03211.t1;Parent=MS.gene03211.t1 |
| chr3.3 | exon | 73731577 | 73732188 | 73731577 | ID=MS.gene03211.t1.exon4;Parent=MS.gene03211.t1 |
| chr3.3 | CDS | 73731577 | 73732188 | 73731577 | ID=cds.MS.gene03211.t1;Parent=MS.gene03211.t1 |
| Gene Sequence |
| Protein sequence |
