AlfalfaGEDB | MS.gene032175

M. sativa cultivar XinJiangDaYe / MS.gene032175

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF13540.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032175.t1	XP_003597519.1	99	886	9	0	1	886	36	921	0.00E+00	1789.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032175.t1	Q75J39	64.6	893	292	9	1	886	26	901	0.0e+00	1192.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032175.t1	G7IHU8	99.0	886	9	0	1	886	36	921	0.0e+00	1789.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032175.t1	MTR_2g098910	99.097	886	8	0	1	886	36	921	0.0	1816
MS.gene032175.t1	MTR_4g067230	74.888	896	198	14	1	886	36	914	0.0	1332
MS.gene032175.t1	MTR_1g064560	32.306	811	424	30	1	762	26	760	2.77e-113	364
MS.gene032175.t1	MTR_3g464080	32.678	814	431	28	13	769	35	788	3.89e-108	352
MS.gene032175.t1	MTR_3g070800	31.868	819	431	27	2	769	28	770	5.85e-99	327
MS.gene032175.t1	MTR_5g082630	31.273	809	443	28	10	766	39	786	1.03e-95	318
MS.gene032175.t1	MTR_4g035180	49.536	323	138	6	473	778	418	732	3.72e-87	294
MS.gene032175.t1	MTR_2g084120	38.058	381	206	8	392	760	8	370	3.09e-75	252
MS.gene032175.t1	MTR_1g080740	44.218	294	159	3	475	766	510	800	2.91e-74	261
MS.gene032175.t1	MTR_4g044663	43.709	302	158	6	461	760	25	316	5.32e-74	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032175.t1	AT3G59420	67.265	892	257	10	1	886	33	895	0.0	1207
MS.gene032175.t1	AT2G39180	30.760	803	449	23	3	761	28	767	6.34e-107	348
MS.gene032175.t1	AT3G09780	32.226	813	422	29	4	762	30	767	1.14e-103	339
MS.gene032175.t1	AT5G47850	32.584	801	418	32	1	771	32	740	1.48e-96	320
MS.gene032175.t1	AT3G55950	47.634	317	145	7	471	766	480	796	8.34e-77	267
MS.gene032175.t1	AT3G55950	24.921	317	208	13	2	314	35	325	2.81e-13	74.3
MS.gene032175.t1	AT3G58690	44.710	293	155	4	473	760	73	363	8.13e-76	253
MS.gene032175.t1	AT3G04690	45.270	296	155	3	473	766	503	793	3.13e-75	263
MS.gene032175.t1	AT5G28680	44.595	296	157	3	473	766	507	797	5.31e-75	263
MS.gene032175.t1	AT5G28680	44.595	296	157	3	473	766	507	797	5.31e-75	263

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Find 198 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTTGATCAATACA+AGG	0.614511	2.3:+4537894	None:intergenic
AAACATCTGACTTTGTTGTG+AGG	0.678035	2.3:+4538198	None:intergenic
AAAGTGTTTGACATTGCAGC+TGG	0.555497	2.3:-4539412	MS.gene032175:CDS
AACAGTTGTTGCTGTTAAAA+GGG	0.462565	2.3:-4538678	MS.gene032175:CDS
AACGGATAGTAGCTCCCCAC+TGG	0.539704	2.3:-4538279	MS.gene032175:CDS
AACTATGGTAATGTTGTTGG+TGG	0.578343	2.3:-4537651	MS.gene032175:CDS
AAGAAGGTAACATTGTTCAA+TGG	0.551518	2.3:-4538112	MS.gene032175:CDS
AAGAGCTTTAGCAATGTTAA+TGG	0.285766	2.3:-4537922	MS.gene032175:CDS
AAGTAGTAGCCATATAGAAA+TGG	0.380949	2.3:-4539998	MS.gene032175:CDS
AAGTCAGATGTTTATAGCTT+TGG	0.382637	2.3:-4538188	MS.gene032175:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGGTAACATTGTTCAA+TGG	-	chr2.3:4539658-4539677	MS.gene032175:CDS	30.0%
AAGTAGTAGCCATATAGAAA+TGG	-	chr2.3:4537772-4537791	MS.gene032175:CDS	30.0%
AAGTCAGATGTTTATAGCTT+TGG	-	chr2.3:4539582-4539601	MS.gene032175:CDS	30.0%
ACAAAGAACTATGTGTTTGA+TGG	-	chr2.3:4537932-4537951	MS.gene032175:CDS	30.0%
ACTACTTGTATATGAGTACA+TGG	-	chr2.3:4539239-4539258	MS.gene032175:CDS	30.0%
AGGTTAGTACTCAAGTTATT+AGG	-	chr2.3:4538038-4538057	MS.gene032175:CDS	30.0%
AGTAGTAGCCATATAGAAAT+GGG	-	chr2.3:4537773-4537792	MS.gene032175:CDS	30.0%
AGTTGAAAGAGCAATTAGAT+TGG	-	chr2.3:4539304-4539323	MS.gene032175:CDS	30.0%
ATGATCATGGAGTTATTTGT+TGG	-	chr2.3:4538293-4538312	MS.gene032175:CDS	30.0%
ATTGATATGCAATACGAAGA+AGG	-	chr2.3:4539642-4539661	MS.gene032175:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	4537566	4540226	4537566	ID=MS.gene032175
chr2.3	mRNA	4537566	4540226	4537566	ID=MS.gene032175.t1;Parent=MS.gene032175
chr2.3	exon	4537566	4540226	4537566	ID=MS.gene032175.t1.exon1;Parent=MS.gene032175.t1
chr2.3	CDS	4537566	4540226	4537566	ID=cds.MS.gene032175.t1;Parent=MS.gene032175.t1

Gene Sequence

>MS.gene032175

ATGTCATCAATTGCTGTCTCTTATGGAGATAAAGGTTCTGCTTTCTGTGGCTTGAAATCAGATGGATCTCACACTGTGACATGTTATGGAATGAACTCGGCCATAGTTTATGGAACACCATCTCAGTTTCCATTCCTTGGTCTAACTTCTGGTGATGGTTTTGTTTGTGGACTTTTAATGAGTTCAAATCAACCATATTGTTGGGGAAGTAGTAGCCATATAGAAATGGGTGTGCCACAACCTATGTTTAAGGATGCTCAGTACTTAGAAATCAGTGCCGGCGATTATCATGTTTGTGGATTGAGGAAGCCTTTGACAGGAAGACACAGGAACTTTTCTTTTGTTGATTGTTGGGGATACAATATGACAAAGAACTATGTGTTTGATGGACAGATTCAATCGATTTCGGCAGGTTCTGAGTTCAATTGTGGACTTTTTTCGCAGAATCGGACGGTATTTTGTTGGGGTGATGAGGTTAGTACTCAAGTTATTAGGTTGATTCCACAAGGAATGAGGTTTCAGAAGGTGTCTTGTGGAGGGTATCATGTATGTGGAATCTTGGAAGGTGTGAATTCTAGAACTGTTTGTTGGGGGAGAAGTTTGGATTTGGAGGAAGAAATTTCATTGATACCTAATCAAGGACAAGGTGGTAATGTTGAGTTGGCTCCAAATGATCCTATGCTTTCTGTTGTTGGAGGAAAGTTTCATGCTTGTGGCATTAAGAGCTATGATCATGGAGTTATTTGTTGGGGGTTAAATTTGAAAACAAGCACAAAAGTTCCTAAAGGGATTAAAGTGTTTGACATTGCAGCTGGTGATTATTTTACCTGTGGAATTCTTGTTGCAAAATCTCTTGAATCTATTTGTTGGGGTGTTGGATTTCCAACTTCTCTACCTTTGGCTGTTTCACCGAGAACAAGAAAGTGTTTGTCTGCACCTTGTCCTCCAAGTTACTATGAAATTGAAAAGGATCAACAAAATGGTCTAATTTGTCAAGATCCAAATTCTCACCTTTGTGTTCCATGCAGTGGTGTTTGTCCTGATGAAATGTATCAGAAAAGTGGTTGCAATTTGAAATCTGATATACTATGCGGATATAATTGTTCTGTTTGTTCTTCACCTGAATGCTTCTCAAACTGTTCCTCCTCTTCTTCCAATGCTGCTAACGGTGGGAAGAAAAATGAAAGATTTTGGTCTATGCAGTTGATAGTTATTGTTGGTGAGATAGTATTTGCTGTTTTTATAGTCAGTGCTGTCTCTATTACCGCGGTTATGTATGTTCGCTACAAGCTAAGAGATTGTGAGTGTTCAACAAGACCGTTAAACTCGATGAAGAGACTTAATGTTAGTTCTTCGGTTCAAAAGGATAACAGTAAGGTTCGACCGGACGCGGAGGAGATCAAGATAAGAAGGGCTCAGAAGTTCTCTTATGAGGAACTTGAAAATGCAACCTGTGGATTCAAAGAAGAATCAATTGTTGGGAAAGGAAGTTTTTCATGTGTGTTCAAAGGTGTTCTCAAAGATGGAACAGTTGTTGCTGTTAAAAGGGCTATTATGTCTCCAAACATGCAGAAAAATTCCAAAGAGTTTCACACAGAACTTGACTTGTTATCTAGGTTGAACCATGCTCATTTGCTCAACCTATTAGGCTATTGTGAAGAAGGAGGTGAAAGACTACTTGTATATGAGTACATGGCACATGGATCATTGCATCAACACCTTCATGGCAAAAACAAAGAGTTGAAAGAGCAATTAGATTGGATCAGAAGGGTAACAATTGCGGTCCAAGCAGCTCGAGGAATCGAATATCTCCACGGCTATGCATGCCCACCGGTGATTCATAGAGACATCAAATCTTCAAACATACTCATTGATGAAGAACACAATGCAAGAGTTTCGGATTTCGGTTTGTCATTACTAGGTCCAACGGATAGTAGCTCCCCACTGGCCGAGTTACCGGCCGGAACACTTGGTTATCTTGATCCTGAATACTATAGACTTCACTACCTCACAACAAAGTCAGATGTTTATAGCTTTGGTGTTCTACTATTAGAAATTCTAAGTGGTAGAAAAGCTATTGATATGCAATACGAAGAAGGTAACATTGTTCAATGGTCAGTTCCATTAATAAAATCGGGTGATATAGCTTCGATTTTAGACCCTTGTTTGAAACCACCTTCGGATATTGAAGCATTGAGAAGAATAGCAAATGTTGCTTGTAAATGTGTGAGAATGAGAGGTAAAGATAGGCCTTCAATGGACAAAGTAACAACAAGTTTGGAAAGAGCTTTAGCAATGTTAATGGGAAGTCCTTGTATTGATCAACCAATTTTGCCAACTGAGGTTGTTTTAGGAAGTAATAGAATGCATAAGAAAACATCTCAAAGGTCTTCAAATCGGTCGGCTTCAGAAATCGATGTAGTCGAAGGTGAAGATCAAAGGTTTGAGTTTAGAGCACCTTCTTGGATAACTTTTCCAAGTGTAACTTCTTCTCAAAGAAGAAAGTCTTCAGGGTCAGAAGGTGAAGTTGAAGTGAAGATTGTTGAAGGAAGAAACTATGGTAATGTTGTTGGTGGTGGAGGTGATGTTTTGAGAAGTCTTGAGGAAGAAATTGGTCCTGCTTCTCCTCAAGAGAGACTCTTCTTGCAACACAACTTCTAA

Protein sequence

>MS.gene032175.t1

MSSIAVSYGDKGSAFCGLKSDGSHTVTCYGMNSAIVYGTPSQFPFLGLTSGDGFVCGLLMSSNQPYCWGSSSHIEMGVPQPMFKDAQYLEISAGDYHVCGLRKPLTGRHRNFSFVDCWGYNMTKNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDEVSTQVIRLIPQGMRFQKVSCGGYHVCGILEGVNSRTVCWGRSLDLEEEISLIPNQGQGGNVELAPNDPMLSVVGGKFHACGIKSYDHGVICWGLNLKTSTKVPKGIKVFDIAAGDYFTCGILVAKSLESICWGVGFPTSLPLAVSPRTRKCLSAPCPPSYYEIEKDQQNGLICQDPNSHLCVPCSGVCPDEMYQKSGCNLKSDILCGYNCSVCSSPECFSNCSSSSSNAANGGKKNERFWSMQLIVIVGEIVFAVFIVSAVSITAVMYVRYKLRDCECSTRPLNSMKRLNVSSSVQKDNSKVRPDAEEIKIRRAQKFSYEELENATCGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGKNKELKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWSVPLIKSGDIASILDPCLKPPSDIEALRRIANVACKCVRMRGKDRPSMDKVTTSLERALAMLMGSPCIDQPILPTEVVLGSNRMHKKTSQRSSNRSASEIDVVEGEDQRFEFRAPSWITFPSVTSSQRRKSSGSEGEVEVKIVEGRNYGNVVGGGGDVLRSLEEEIGPASPQERLFLQHNF