Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032179.t1 | XP_003597525.1 | 97.5 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 1.30E-135 | 492.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032179.t1 | Q96288 | 57.1 | 254 | 92 | 7 | 1 | 243 | 1 | 248 | 4.7e-73 | 275.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032179.t1 | G7IHV4 | 97.5 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 9.5e-136 | 492.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene032179.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032179.t1 | MTR_2g099010 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 0.0 | 497 |
MS.gene032179.t1 | MTR_2g099010 | 97.119 | 243 | 6 | 1 | 1 | 243 | 1 | 242 | 5.55e-179 | 491 |
MS.gene032179.t1 | MTR_2g099010 | 95.722 | 187 | 8 | 0 | 57 | 243 | 31 | 217 | 1.91e-123 | 349 |
MS.gene032179.t1 | MTR_4g067320 | 70.082 | 244 | 68 | 3 | 1 | 243 | 1 | 240 | 2.04e-123 | 350 |
MS.gene032179.t1 | MTR_4g067320 | 69.672 | 244 | 68 | 4 | 1 | 243 | 1 | 239 | 3.70e-121 | 345 |
MS.gene032179.t1 | MTR_2g073370 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 6.74e-42 | 144 |
MS.gene032179.t1 | MTR_1g023260 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 1.10e-36 | 130 |
MS.gene032179.t1 | MTR_1g023260 | 41.040 | 173 | 81 | 2 | 1 | 152 | 1 | 173 | 6.92e-35 | 123 |
MS.gene032179.t1 | MTR_3g113070 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 1.17e-34 | 124 |
MS.gene032179.t1 | MTR_3g117320 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 8.80e-34 | 122 |
MS.gene032179.t1 | MTR_4g071200 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.67e-32 | 118 |
MS.gene032179.t1 | MTR_5g021580 | 46.939 | 98 | 49 | 2 | 1 | 98 | 1 | 95 | 3.67e-23 | 93.2 |
MS.gene032179.t1 | MTR_5g021580 | 46.939 | 98 | 49 | 2 | 1 | 98 | 1 | 95 | 3.88e-23 | 93.2 |
MS.gene032179.t1 | MTR_3g105710 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 2.41e-17 | 79.7 |
MS.gene032179.t1 | MTR_7g018170 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 9.56e-17 | 79.0 |
MS.gene032179.t1 | MTR_7g018170 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 4.48e-11 | 62.4 |
MS.gene032179.t1 | MTR_1g013450 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 3.37e-16 | 76.6 |
MS.gene032179.t1 | MTR_4g128930 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 3.80e-15 | 74.3 |
MS.gene032179.t1 | MTR_7g108150 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 4.60e-13 | 68.2 |
MS.gene032179.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 8.12e-12 | 64.7 |
MS.gene032179.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 1.05e-11 | 63.9 |
MS.gene032179.t1 | MTR_3g082630 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 6.81e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032179.t1 | AT2G31380 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 2.85e-94 | 276 |
MS.gene032179.t1 | AT1G06040 | 57.087 | 254 | 92 | 7 | 1 | 243 | 1 | 248 | 8.84e-94 | 276 |
MS.gene032179.t1 | AT1G06040 | 62.941 | 170 | 52 | 4 | 1 | 161 | 1 | 168 | 9.18e-68 | 207 |
MS.gene032179.t1 | AT1G78600 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 5.33e-41 | 142 |
MS.gene032179.t1 | AT1G78600 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 9.66e-41 | 142 |
MS.gene032179.t1 | AT4G10240 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.30e-35 | 124 |
MS.gene032179.t1 | AT1G75540 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 4.75e-34 | 125 |
MS.gene032179.t1 | AT4G39070 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.60e-30 | 113 |
MS.gene032179.t1 | AT2G21320 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 1.73e-23 | 93.6 |
MS.gene032179.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.57e-23 | 92.8 |
MS.gene032179.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.57e-23 | 92.8 |
MS.gene032179.t1 | AT5G15850 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 2.79e-17 | 80.1 |
MS.gene032179.t1 | AT2G24790 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.03e-17 | 78.2 |
MS.gene032179.t1 | AT2G24790 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.03e-16 | 76.6 |
MS.gene032179.t1 | AT3G02380 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.17e-15 | 75.5 |
MS.gene032179.t1 | AT5G24930 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.44e-15 | 75.5 |
MS.gene032179.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 5.74e-15 | 73.6 |
MS.gene032179.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 6.90e-15 | 72.8 |
MS.gene032179.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.11e-12 | 65.9 |
MS.gene032179.t1 | AT1G28050 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.15e-12 | 65.9 |
MS.gene032179.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.24e-12 | 65.9 |
MS.gene032179.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.40e-11 | 61.6 |
MS.gene032179.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.99e-11 | 61.6 |
Find 42 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTGGCATATGTCACATTT+AGG | 0.154164 | 2.3:-4495481 | None:intergenic |
GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2.3:-4496281 | None:intergenic |
TTGGGGTGTTGATGACTTAT+TGG | 0.243521 | 2.3:+4496381 | MS.gene032179:CDS |
ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2.3:-4496313 | None:intergenic |
CTTGGCATATGTCACATTTA+GGG | 0.307139 | 2.3:-4495480 | None:intergenic |
TGATTTGCAGAAAGGCTTCC+AGG | 0.309803 | 2.3:-4496208 | None:intergenic |
TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2.3:-4497222 | None:intergenic |
AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2.3:-4497173 | None:intergenic |
CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2.3:+4497045 | MS.gene032179:intron |
TTTGGCGCAGTTAGATTTCA+TGG | 0.374267 | 2.3:-4496263 | None:intergenic |
TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2.3:+4497270 | MS.gene032179:CDS |
TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2.3:-4497153 | None:intergenic |
GCACAACAAATCATTGTTGC+AGG | 0.412099 | 2.3:-4495352 | None:intergenic |
TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2.3:+4497053 | MS.gene032179:CDS |
CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2.3:-4497282 | None:intergenic |
AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2.3:-4497124 | None:intergenic |
AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2.3:-4496349 | None:intergenic |
TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2.3:-4496310 | None:intergenic |
TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2.3:-4497196 | None:intergenic |
CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2.3:+4496299 | MS.gene032179:CDS |
CACCAGCGCTTCCTTGCGAC+AGG | 0.519290 | 2.3:+4496229 | MS.gene032179:CDS |
AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2.3:-4496216 | None:intergenic |
TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2.3:+4497058 | MS.gene032179:CDS |
AGTTAGATTTCATGGCCACT+TGG | 0.554538 | 2.3:-4496255 | None:intergenic |
TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2.3:-4497055 | None:intergenic |
TACCTGTCGCAAGGAAGCGC+TGG | 0.556206 | 2.3:-4496231 | None:intergenic |
AGACGACGAACAAACTCACT+TGG | 0.565694 | 2.3:+4496285 | MS.gene032179:CDS |
GACGAATCGATTCATTTACC+TGG | 0.577934 | 2.3:+4496190 | MS.gene032179:CDS |
GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2.3:+4497071 | MS.gene032179:CDS |
ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2.3:+4497072 | MS.gene032179:CDS |
AGCTTGCAAGCAAGCATCAG+AGG | 0.588673 | 2.3:+4495428 | MS.gene032179:CDS |
TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2.3:+4497107 | MS.gene032179:CDS |
AATAAGTCATCAACACCCCA+AGG | 0.619248 | 2.3:-4496379 | None:intergenic |
GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2.3:-4497277 | None:intergenic |
CCACTTGGATACCTGTCGCA+AGG | 0.630313 | 2.3:-4496240 | None:intergenic |
ATAAGTCATCAACACCCCAA+GGG | 0.636431 | 2.3:-4496378 | None:intergenic |
GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2.3:-4497144 | None:intergenic |
TAAGTCATCAACACCCCAAG+GGG | 0.667753 | 2.3:-4496377 | None:intergenic |
AGACAGGGCACTCTTCTGTG+AGG | 0.698154 | 2.3:+4496162 | MS.gene032179:CDS |
CCTTGCGACAGGTATCCAAG+TGG | 0.753321 | 2.3:+4496240 | MS.gene032179:CDS |
AAGTCATCAACACCCCAAGG+GGG | 0.775594 | 2.3:-4496376 | None:intergenic |
AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2.3:+4497068 | MS.gene032179:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAATAAACTCAAATAAAT+CGG | + | chr2.3:4495998-4496017 | MS.gene032179:intron | 10.0% |
!!! | AGACAAAAAAACATTTTATA+AGG | - | chr2.3:4496545-4496564 | None:intergenic | 15.0% |
!! | AAAAAACAGAGAGAAAATTA+AGG | - | chr2.3:4495519-4495538 | None:intergenic | 20.0% |
!! | ACATAATAAGTAACAGTTAT+AGG | - | chr2.3:4496076-4496095 | None:intergenic | 20.0% |
!! | ACATTTCTTGTATTTAATCA+TGG | - | chr2.3:4496963-4496982 | None:intergenic | 20.0% |
!! | ATCATGTATCATTAGATAAT+AGG | - | chr2.3:4496787-4496806 | None:intergenic | 20.0% |
!! | ATCTAATGATACATGATTAA+GGG | + | chr2.3:4496790-4496809 | MS.gene032179:intron | 20.0% |
!! | CATTTCTTGTATTTAATCAT+GGG | - | chr2.3:4496962-4496981 | None:intergenic | 20.0% |
!! | TATCTAATGATACATGATTA+AGG | + | chr2.3:4496789-4496808 | MS.gene032179:intron | 20.0% |
!! | TGAAATCGAATATTTAACTA+AGG | - | chr2.3:4496507-4496526 | None:intergenic | 20.0% |
!!! | TTACAAAACTACATGTTTTT+AGG | - | chr2.3:4496578-4496597 | None:intergenic | 20.0% |
!!! | TTACAAATTTTGTTAGTTCA+TGG | - | chr2.3:4496479-4496498 | None:intergenic | 20.0% |
!!! | TTCACAATTAATTCTTCTTT+TGG | + | chr2.3:4495666-4495685 | MS.gene032179:intron | 20.0% |
!!! | TTGCAACTTTATTTCATAAT+TGG | + | chr2.3:4496440-4496459 | MS.gene032179:intron | 20.0% |
!!! | TTTTGTTATAATTGAGCTAA+GGG | - | chr2.3:4496754-4496773 | None:intergenic | 20.0% |
! | AATTTGTACCAACTAAAATG+TGG | + | chr2.3:4496596-4496615 | MS.gene032179:intron | 25.0% |
! | ACTATTTACATAAGTCATTC+TGG | + | chr2.3:4495928-4495947 | MS.gene032179:intron | 25.0% |
! | CTTAGCTCAATTATAACAAA+AGG | + | chr2.3:4496753-4496772 | MS.gene032179:intron | 25.0% |
! | TGAAGCACAATAAGAAAAAA+AGG | - | chr2.3:4497027-4497046 | None:intergenic | 25.0% |
! | TTAATCATGGGAAAATACTT+GGG | - | chr2.3:4496950-4496969 | None:intergenic | 25.0% |
! | TTCATACATGAGTAACTAAT+AGG | + | chr2.3:4495607-4495626 | MS.gene032179:intron | 25.0% |
! | TTTAATCATGGGAAAATACT+TGG | - | chr2.3:4496951-4496970 | None:intergenic | 25.0% |
!! | AATCCTAAAGTGTTTAAAAG+AGG | - | chr2.3:4495818-4495837 | None:intergenic | 25.0% |
!! | TAACCTCTTTTAAACACTTT+AGG | + | chr2.3:4495812-4495831 | MS.gene032179:intron | 25.0% |
!! | TAAGGTGCTAATTAATTACT+TGG | - | chr2.3:4495501-4495520 | None:intergenic | 25.0% |
!!! | CTTTTGTTATAATTGAGCTA+AGG | - | chr2.3:4496755-4496774 | None:intergenic | 25.0% |
AAGTTAAGACAACATACCTT+TGG | - | chr2.3:4495637-4495656 | None:intergenic | 30.0% | |
AGTTTCTGTGTGATGAATAA+TGG | - | chr2.3:4497176-4497195 | None:intergenic | 30.0% | |
! | CATATTTTGTGTTGAAGACA+GGG | + | chr2.3:4496147-4496166 | MS.gene032179:CDS | 30.0% |
! | TCATATTTTGTGTTGAAGAC+AGG | + | chr2.3:4496146-4496165 | MS.gene032179:CDS | 30.0% |
! | TTTTCTTATTGTGCTTCAGA+AGG | + | chr2.3:4497029-4497048 | MS.gene032179:intron | 30.0% |
!! | AACATGTACCACATTTTAGT+TGG | - | chr2.3:4496607-4496626 | None:intergenic | 30.0% |
AAGTAGCATGTATGAGTTAG+TGG | + | chr2.3:4495730-4495749 | MS.gene032179:intron | 35.0% | |
ACTTGATGTGTATTCCTCTT+AGG | - | chr2.3:4496316-4496335 | None:intergenic | 35.0% | |
ACTTGGCATATGTCACATTT+AGG | - | chr2.3:4495484-4495503 | None:intergenic | 35.0% | |
AGTAGCATGTATGAGTTAGT+GGG | + | chr2.3:4495731-4495750 | MS.gene032179:intron | 35.0% | |
ATAAAACAACAAAGCCAGCT+AGG | + | chr2.3:4496657-4496676 | MS.gene032179:intron | 35.0% | |
ATTAAATCTGGGTCACACAA+AGG | - | chr2.3:4496907-4496926 | None:intergenic | 35.0% | |
CTTGGCATATGTCACATTTA+GGG | - | chr2.3:4495483-4495502 | None:intergenic | 35.0% | |
GTAACTAATAGGTCATCCAA+AGG | + | chr2.3:4495618-4495637 | MS.gene032179:intron | 35.0% | |
TAAAACAACAAAGCCAGCTA+GGG | + | chr2.3:4496658-4496677 | MS.gene032179:intron | 35.0% | |
TCACGTATGAGTTCAATTCT+AGG | - | chr2.3:4497225-4497244 | None:intergenic | 35.0% | |
TGTATGAGTTAGTGGGAATT+AGG | + | chr2.3:4495738-4495757 | MS.gene032179:intron | 35.0% | |
TTTGTTAGACATGTGTGACT+TGG | - | chr2.3:4497199-4497218 | None:intergenic | 35.0% | |
! | TTAATTCTTCTTTTGGCCCT+TGG | + | chr2.3:4495673-4495692 | MS.gene032179:intron | 35.0% |
!! | CAATTGTCTAAGAGCATCTT+TGG | - | chr2.3:4496025-4496044 | None:intergenic | 35.0% |
AATAAGTCATCAACACCCCA+AGG | - | chr2.3:4496382-4496401 | None:intergenic | 40.0% | |
AGTTAGATTTCATGGCCACT+TGG | - | chr2.3:4496258-4496277 | None:intergenic | 40.0% | |
ATAAGTCATCAACACCCCAA+GGG | - | chr2.3:4496381-4496400 | None:intergenic | 40.0% | |
CAATCTAATGAAACCCTAGC+TGG | - | chr2.3:4496674-4496693 | None:intergenic | 40.0% | |
CTTCACCTGTATGTACAAAC+AGG | + | chr2.3:4496111-4496130 | MS.gene032179:intron | 40.0% | |
CTTGTCCTGTTTGTACATAC+AGG | - | chr2.3:4496119-4496138 | None:intergenic | 40.0% | |
CTTTGAGCTTGGTCAAGATT+AGG | + | chr2.3:4495697-4495716 | MS.gene032179:intron | 40.0% | |
GCACAACAAATCATTGTTGC+AGG | - | chr2.3:4495355-4495374 | None:intergenic | 40.0% | |
GTACATACAGGTGAAGCAAA+AGG | - | chr2.3:4496107-4496126 | None:intergenic | 40.0% | |
GTCACCGTGACATTAAATCT+GGG | - | chr2.3:4496852-4496833 | None:intergenic | 40.0% | |
GTGACCCAGATTTAATGTCA+CGG | + | chr2.3:4496911-4496930 | MS.gene032179:intron | 40.0% | |
GTGGCTCAGATTTAATGTCA+CGG | - | chr2.3:4496840-4496859 | None:intergenic | 40.0% | |
TGATGTGTATTCCTCTTAGG+TGG | - | chr2.3:4496313-4496332 | None:intergenic | 40.0% | |
TGTCACCGTGACATTAAATC+TGG | - | chr2.3:4496851-4496832 | None:intergenic | 40.0% | |
TTTGGCGCAGTTAGATTTCA+TGG | - | chr2.3:4496266-4496285 | None:intergenic | 40.0% | |
! | GACGAATCGATTCATTTACC+TGG | + | chr2.3:4496190-4496209 | MS.gene032179:CDS | 40.0% |
!! | ACATGATTAAGGGAAGCACT+TGG | + | chr2.3:4496800-4496819 | MS.gene032179:intron | 40.0% |
!! | CATGATTAAGGGAAGCACTT+GGG | + | chr2.3:4496801-4496820 | MS.gene032179:intron | 40.0% |
!! | TTGGGGTGTTGATGACTTAT+TGG | + | chr2.3:4496381-4496400 | MS.gene032179:CDS | 40.0% |
ACACATTGCCACACAACATC+TGG | + | chr2.3:4496865-4496884 | MS.gene032179:intron | 45.0% | |
AGACGACGAACAAACTCACT+TGG | + | chr2.3:4496285-4496304 | MS.gene032179:CDS | 45.0% | |
AGAGATGGAATGGTTCACAG+AGG | + | chr2.3:4497068-4497087 | MS.gene032179:CDS | 45.0% | |
ATGGAATGGTTCACAGAGGA+GGG | + | chr2.3:4497072-4497091 | MS.gene032179:CDS | 45.0% | |
CACATTGCCACACAACATCT+GGG | + | chr2.3:4496866-4496885 | MS.gene032179:intron | 45.0% | |
CAGAAGGATTCCATGCAGTT+TGG | + | chr2.3:4497045-4497064 | MS.gene032179:intron | 45.0% | |
TAAGTCATCAACACCCCAAG+GGG | - | chr2.3:4496380-4496399 | None:intergenic | 45.0% | |
TACTTTACCGTGCCTGATCT+TGG | + | chr2.3:4497270-4497289 | MS.gene032179:CDS | 45.0% | |
TGACCAAGCTCAAAGTCCAA+GGG | - | chr2.3:4495692-4495711 | None:intergenic | 45.0% | |
TGACTTCACTCAAGAAGCCA+TGG | + | chr2.3:4497107-4497126 | MS.gene032179:CDS | 45.0% | |
TGCAGTTTGGAGAGATGGAA+TGG | + | chr2.3:4497058-4497077 | MS.gene032179:CDS | 45.0% | |
TGGTTGCTAGCATGAGTTAC+TGG | - | chr2.3:4497156-4497175 | None:intergenic | 45.0% | |
TTCCATCTCTCCAAACTGCA+TGG | - | chr2.3:4497058-4497077 | None:intergenic | 45.0% | |
TTCCATGCAGTTTGGAGAGA+TGG | + | chr2.3:4497053-4497072 | MS.gene032179:CDS | 45.0% | |
TTGACCAAGCTCAAAGTCCA+AGG | - | chr2.3:4495693-4495712 | None:intergenic | 45.0% | |
! | GTGAGTTTGTTCGTCGTCTT+TGG | - | chr2.3:4496284-4496303 | None:intergenic | 45.0% |
! | TGATTTGCAGAAAGGCTTCC+AGG | - | chr2.3:4496211-4496230 | None:intergenic | 45.0% |
! | TTCACAGAGGAGGGTCTTTT+TGG | + | chr2.3:4497081-4497100 | MS.gene032179:CDS | 45.0% |
!! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr2.3:4496892-4496911 | None:intergenic | 45.0% |
AAGTCATCAACACCCCAAGG+GGG | - | chr2.3:4496379-4496398 | None:intergenic | 50.0% | |
AGCTTGCAAGCAAGCATCAG+AGG | + | chr2.3:4495428-4495447 | MS.gene032179:CDS | 50.0% | |
CTCACTTGGAACCACCTAAG+AGG | + | chr2.3:4496299-4496318 | MS.gene032179:CDS | 50.0% | |
GATGGAATGGTTCACAGAGG+AGG | + | chr2.3:4497071-4497090 | MS.gene032179:CDS | 50.0% | |
GCATGAGTTACTGGAAGCTG+AGG | - | chr2.3:4497147-4497166 | None:intergenic | 50.0% | |
GTGTGGCAATGTGTGTTGTG+TGG | - | chr2.3:4496859-4496878 | None:intergenic | 50.0% | |
! | AAGTCAGGCACTTGCTGAGA+AGG | - | chr2.3:4496352-4496371 | None:intergenic | 50.0% |
!! | AGCGCTGGTGATTTGCAGAA+AGG | - | chr2.3:4496219-4496238 | None:intergenic | 50.0% |
AGGAACTTCAGCTGCAGCCA+TGG | - | chr2.3:4497127-4497146 | None:intergenic | 55.0% | |
CCACTTGGATACCTGTCGCA+AGG | - | chr2.3:4496243-4496262 | None:intergenic | 55.0% | |
CCTGACTTTACACCCCCTTG+GGG | + | chr2.3:4496364-4496383 | MS.gene032179:CDS | 55.0% | |
CCTTGCGACAGGTATCCAAG+TGG | + | chr2.3:4496240-4496259 | MS.gene032179:CDS | 55.0% | |
GCCTGACTTTACACCCCCTT+GGG | + | chr2.3:4496363-4496382 | MS.gene032179:CDS | 55.0% | |
TGCCTGACTTTACACCCCCT+TGG | + | chr2.3:4496362-4496381 | MS.gene032179:CDS | 55.0% | |
TGGCCCTTGGACTTTGAGCT+TGG | + | chr2.3:4495686-4495705 | MS.gene032179:intron | 55.0% | |
TGTGTGGCCCAGATGTTGTG+TGG | - | chr2.3:4496876-4496895 | None:intergenic | 55.0% | |
! | AGACAGGGCACTCTTCTGTG+AGG | + | chr2.3:4496162-4496181 | MS.gene032179:CDS | 55.0% |
! | CCCCAAGGGGGTGTAAAGTC+AGG | - | chr2.3:4496367-4496386 | None:intergenic | 60.0% |
! | TACCTGTCGCAAGGAAGCGC+TGG | - | chr2.3:4496234-4496253 | None:intergenic | 60.0% |
CACCAGCGCTTCCTTGCGAC+AGG | + | chr2.3:4496229-4496248 | MS.gene032179:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 4495319 | 4497296 | 4495319 | ID=MS.gene032179 |
chr2.3 | mRNA | 4495319 | 4497296 | 4495319 | ID=MS.gene032179.t1;Parent=MS.gene032179 |
chr2.3 | exon | 4495319 | 4495501 | 4495319 | ID=MS.gene032179.t1.exon1;Parent=MS.gene032179.t1 |
chr2.3 | CDS | 4495319 | 4495501 | 4495319 | ID=cds.MS.gene032179.t1;Parent=MS.gene032179.t1 |
chr2.3 | exon | 4496133 | 4496432 | 4496133 | ID=MS.gene032179.t1.exon2;Parent=MS.gene032179.t1 |
chr2.3 | CDS | 4496133 | 4496432 | 4496133 | ID=cds.MS.gene032179.t1;Parent=MS.gene032179.t1 |
chr2.3 | exon | 4497048 | 4497296 | 4497048 | ID=MS.gene032179.t1.exon3;Parent=MS.gene032179.t1 |
chr2.3 | CDS | 4497048 | 4497296 | 4497048 | ID=cds.MS.gene032179.t1;Parent=MS.gene032179.t1 |
Gene Sequence |
Protein sequence |