AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032189

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032189.t1 MTR_2g099110 97.079 445 12 1 1 445 9 452 0.0 902
MS.gene032189.t1 MTR_5g015490 54.774 398 153 7 61 445 108 491 1.40e-148 432
MS.gene032189.t1 MTR_4g097080 55.499 391 151 8 63 445 129 504 6.46e-147 428
MS.gene032189.t1 MTR_2g089100 28.266 421 246 9 60 445 45 444 3.05e-51 179
MS.gene032189.t1 MTR_1g029420 29.306 389 245 8 66 444 224 592 1.03e-50 181
MS.gene032189.t1 MTR_4g095500 28.690 481 279 12 13 445 5 469 1.98e-47 169
MS.gene032189.t1 MTR_2g082090 28.118 441 275 10 20 443 163 578 7.95e-47 170
MS.gene032189.t1 MTR_3g089055 28.021 389 250 8 66 444 202 570 1.38e-45 166
MS.gene032189.t1 MTR_3g089055 28.021 389 250 8 66 444 197 565 1.41e-45 166
MS.gene032189.t1 MTR_5g094450 28.608 395 244 10 66 444 160 532 1.35e-42 157
MS.gene032189.t1 MTR_5g097480 28.462 390 245 9 67 444 177 544 4.02e-42 156
MS.gene032189.t1 MTR_5g015950 27.021 433 244 11 66 445 34 447 9.63e-42 154
MS.gene032189.t1 MTR_3g053270 27.021 433 244 11 66 445 34 447 9.63e-42 154
MS.gene032189.t1 MTR_3g056110 26.478 389 256 8 66 444 174 542 3.98e-39 148
MS.gene032189.t1 MTR_4g133660 28.316 392 244 11 66 443 174 542 2.10e-38 146
MS.gene032189.t1 MTR_8g020840 27.317 410 250 13 59 444 163 548 6.76e-38 145
MS.gene032189.t1 MTR_7g074650 27.676 383 240 10 70 445 441 793 2.71e-37 145
MS.gene032189.t1 MTR_8g442410 28.462 390 246 10 68 444 156 525 3.79e-37 142
MS.gene032189.t1 MTR_2g026250 26.606 436 278 13 31 444 181 596 6.46e-34 134
MS.gene032189.t1 MTR_7g027190 25.570 395 256 9 67 444 300 673 7.78e-34 134
MS.gene032189.t1 MTR_3g065980 27.342 395 242 9 68 444 173 540 3.17e-33 132
MS.gene032189.t1 MTR_4g077760 28.753 393 237 11 66 444 192 555 5.40e-33 131
MS.gene032189.t1 MTR_4g102790 24.422 389 267 8 67 445 292 663 9.93e-33 131
MS.gene032189.t1 MTR_2g097310 27.481 393 246 11 67 445 272 639 8.82e-32 128
MS.gene032189.t1 MTR_4g064200 27.179 390 251 11 67 445 284 651 1.43e-31 127
MS.gene032189.t1 MTR_2g097350 28.827 392 242 13 67 445 274 641 4.30e-31 126
MS.gene032189.t1 MTR_3g072710 27.320 388 239 14 77 443 134 499 5.35e-31 125
MS.gene032189.t1 MTR_7g062120 26.118 425 277 11 36 445 339 741 2.26e-30 124
MS.gene032189.t1 MTR_4g076020 26.786 392 223 17 70 445 87 430 5.45e-30 121
MS.gene032189.t1 MTR_1g069725 26.256 438 276 16 14 443 64 462 7.15e-30 121
MS.gene032189.t1 MTR_4g104020 25.616 406 254 12 60 444 142 520 3.66e-28 117
MS.gene032189.t1 MTR_2g097463 27.247 356 225 10 67 409 290 624 1.37e-27 116
MS.gene032189.t1 MTR_2g097467 25.281 356 232 8 67 409 289 623 1.97e-27 115
MS.gene032189.t1 MTR_4g064120 26.243 362 236 11 42 388 226 571 2.74e-27 115
MS.gene032189.t1 MTR_5g058860 28.842 423 252 18 46 443 98 496 3.15e-27 114
MS.gene032189.t1 MTR_2g097410 25.062 403 267 10 57 445 361 742 3.28e-27 115
MS.gene032189.t1 MTR_4g064160 24.422 389 265 8 67 445 316 685 3.42e-27 115
MS.gene032189.t1 MTR_4g064150 25.320 391 263 12 67 445 361 734 1.44e-26 113
MS.gene032189.t1 MTR_2g097390 26.410 390 254 10 67 445 275 642 2.51e-26 112
MS.gene032189.t1 MTR_4g064180 25.824 364 235 12 42 388 226 571 8.18e-26 110
MS.gene032189.t1 MTR_2g097473 24.700 417 271 12 2 408 239 622 1.16e-25 110
MS.gene032189.t1 MTR_2g034250 24.557 395 260 12 68 444 211 585 3.88e-23 102
MS.gene032189.t1 MTR_2g034260 23.291 395 264 13 68 444 211 584 7.98e-23 101
MS.gene032189.t1 MTR_1g096030 25.908 413 266 14 53 444 66 459 1.05e-22 100
MS.gene032189.t1 MTR_2g034280 26.298 289 196 8 68 344 204 487 8.39e-22 98.6
MS.gene032189.t1 MTR_4g076140 30.172 232 150 5 56 285 37 258 1.15e-21 97.4
MS.gene032189.t1 MTR_5g009080 26.522 230 159 4 56 284 45 265 4.37e-21 95.9
MS.gene032189.t1 MTR_3g022830 22.371 447 265 10 56 444 14 436 1.74e-20 93.6
MS.gene032189.t1 MTR_2g097380 26.250 320 197 9 74 385 231 519 1.20e-19 92.0
MS.gene032189.t1 MTR_0092s0100 23.316 386 257 9 68 444 376 731 1.17e-17 86.3
MS.gene032189.t1 MTR_0092s0100 23.316 386 257 9 68 444 373 728 1.32e-17 85.9
MS.gene032189.t1 MTR_7g057230 27.759 299 181 10 159 443 379 656 1.53e-17 85.5
MS.gene032189.t1 MTR_6g047750 24.378 402 252 13 64 444 292 662 2.28e-16 82.0
MS.gene032189.t1 MTR_8g093070 25.634 355 218 15 103 445 177 497 9.74e-16 79.7
MS.gene032189.t1 MTR_4g026485 21.763 363 254 8 86 444 288 624 5.78e-15 77.4
MS.gene032189.t1 MTR_1g086970 21.644 365 260 10 89 444 131 478 6.85e-15 77.0
MS.gene032189.t1 MTR_8g077940 23.828 256 176 8 86 332 201 446 7.42e-12 67.8
MS.gene032189.t1 MTR_7g109580 22.432 370 237 12 94 444 216 554 1.16e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032189.t1 AT4G37650 51.111 405 166 9 60 445 139 530 2.15e-141 415
MS.gene032189.t1 AT3G49950 30.976 410 236 12 60 445 23 409 1.02e-56 193
MS.gene032189.t1 AT5G48150 28.747 407 248 10 52 444 112 490 4.24e-47 169
MS.gene032189.t1 AT5G48150 28.747 407 248 10 52 444 112 490 4.24e-47 169
MS.gene032189.t1 AT5G48150 28.747 407 248 10 52 444 112 490 4.24e-47 169
MS.gene032189.t1 AT5G48150 28.747 407 248 10 52 444 112 490 4.24e-47 169
MS.gene032189.t1 AT2G04890 28.756 386 242 9 67 444 53 413 4.26e-47 167
MS.gene032189.t1 AT1G50600 29.383 405 251 10 50 444 147 526 8.19e-45 164
MS.gene032189.t1 AT1G50600 29.383 405 251 10 50 444 218 597 1.89e-44 164
MS.gene032189.t1 AT1G50600 29.383 405 251 10 50 444 222 601 2.13e-44 164
MS.gene032189.t1 AT1G21450 27.725 422 268 11 37 444 195 593 1.05e-42 159
MS.gene032189.t1 AT3G13840 29.245 424 249 12 39 444 120 510 5.26e-42 155
MS.gene032189.t1 AT3G54220 29.777 403 239 15 55 445 281 651 1.06e-38 148
MS.gene032189.t1 AT3G03450 27.225 382 253 9 68 444 184 545 1.28e-37 144
MS.gene032189.t1 AT4G17230 27.551 392 250 10 66 445 157 526 8.50e-37 142
MS.gene032189.t1 AT4G17230 27.551 392 250 10 66 445 157 526 8.50e-37 142
MS.gene032189.t1 AT5G17490 27.559 381 247 9 68 444 161 516 2.21e-36 140
MS.gene032189.t1 AT1G14920 27.506 389 238 10 68 444 173 529 1.09e-34 135
MS.gene032189.t1 AT3G46600 28.718 390 246 10 67 445 4 372 3.59e-34 132
MS.gene032189.t1 AT1G66350 27.487 382 241 11 68 444 156 506 4.56e-34 134
MS.gene032189.t1 AT3G46600 27.570 428 270 11 29 445 182 580 1.70e-33 133
MS.gene032189.t1 AT3G46600 27.570 428 270 11 29 445 150 548 1.92e-33 132
MS.gene032189.t1 AT2G01570 26.753 385 246 9 68 444 225 581 5.10e-33 131
MS.gene032189.t1 AT5G59450 28.061 392 250 10 67 445 227 599 9.63e-33 131
MS.gene032189.t1 AT5G41920 27.990 418 253 16 46 444 12 400 6.06e-31 123
MS.gene032189.t1 AT5G66770 27.273 418 262 13 43 444 193 584 1.35e-29 121
MS.gene032189.t1 AT1G07530 25.238 420 272 12 38 445 377 766 4.58e-29 120
MS.gene032189.t1 AT1G63100 24.619 394 263 9 67 443 252 628 4.93e-29 120
MS.gene032189.t1 AT1G63100 24.619 394 263 9 67 443 277 653 5.80e-29 120
MS.gene032189.t1 AT2G29065 25.127 394 264 10 67 445 252 629 1.91e-28 118
MS.gene032189.t1 AT4G08250 27.907 387 232 14 76 443 118 476 7.78e-28 115
MS.gene032189.t1 AT2G29060 26.343 391 258 9 67 445 284 656 1.12e-27 116
MS.gene032189.t1 AT2G29060 26.343 391 258 9 67 445 321 693 1.17e-27 116
MS.gene032189.t1 AT2G37650 25.831 391 255 12 67 445 335 702 1.52e-26 113
MS.gene032189.t1 AT2G37650 25.831 391 255 12 67 445 347 714 1.57e-26 113
MS.gene032189.t1 AT1G07520 26.276 392 261 10 67 445 319 695 1.59e-26 113
MS.gene032189.t1 AT1G55580 27.301 326 208 9 133 444 135 445 1.68e-26 111
MS.gene032189.t1 AT1G07520 26.276 392 261 10 67 445 318 694 1.70e-26 113
MS.gene032189.t1 AT1G07520 26.276 392 261 10 67 445 154 530 2.15e-26 112
MS.gene032189.t1 AT1G07520 26.276 392 261 10 67 445 154 530 2.15e-26 112
MS.gene032189.t1 AT3G50650 26.944 360 227 11 98 444 206 542 2.76e-24 105
MS.gene032189.t1 AT1G50420 29.439 214 145 2 58 271 48 255 3.44e-23 102
MS.gene032189.t1 AT5G52510 23.775 408 252 11 64 444 265 640 3.71e-20 93.6
MS.gene032189.t1 AT4G00150 26.766 269 163 9 72 330 212 456 1.02e-12 70.5
MS.gene032189.t1 AT3G60630 24.920 313 197 12 147 444 333 622 3.80e-12 68.9

Find 65 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAGATGATCATATTTC+AGG 0.247824 2.3:+4401934 MS.gene032189:CDS
AGTGTTCAAGAAGCATAATT+AGG 0.262613 2.3:+4401713 MS.gene032189:CDS
AAGAAGCATAATTAGGGTTT+TGG 0.264830 2.3:+4401720 MS.gene032189:CDS
TGCACACTCTTTGAGAAGTT+TGG 0.280317 2.3:-4400870 None:intergenic
AACGAGTTATCTTCACCTTA+TGG 0.280967 2.3:+4400947 MS.gene032189:CDS
GGAGAAATTTGCTAGGCTTA+TGG 0.293692 2.3:+4401360 MS.gene032189:CDS
GAGAAATTTGCTAGGCTTAT+GGG 0.296804 2.3:+4401361 MS.gene032189:CDS
GTAAGTCCATGGACAACTTT+TGG 0.310503 2.3:+4401124 MS.gene032189:CDS
GAAGGAGGAGCCAGTTGTTT+GGG 0.360276 2.3:+4401972 MS.gene032189:CDS
GGAAGGAGGAGCCAGTTGTT+TGG 0.371169 2.3:+4401971 MS.gene032189:CDS
GCCTACTCTTCTAGAAGCTT+TGG 0.372153 2.3:+4401240 MS.gene032189:CDS
ATTAACCTCTCATTACTTGT+TGG 0.376305 2.3:-4401679 None:intergenic
CATGTTGATGCCCAAACAAC+TGG 0.384320 2.3:-4401982 None:intergenic
GTGTTCAAGAAGCATAATTA+GGG 0.390341 2.3:+4401714 MS.gene032189:CDS
TGACAACAATTGTGAGCTTA+AGG 0.423250 2.3:-4401288 None:intergenic
GTATTCTTTGAAGTATTGTA+AGG 0.423643 2.3:-4400689 None:intergenic
TTCTAGTGTTGTTGTTATGA+AGG 0.438949 2.3:+4401321 MS.gene032189:CDS
CTAATAACGTTCAACTCAAA+AGG 0.439883 2.3:-4401388 None:intergenic
TGATGTATGCATCATGTCTA+TGG 0.450632 2.3:-4400771 None:intergenic
GCAATAGCTTTGAATTGTGT+TGG 0.455338 2.3:+4401469 MS.gene032189:CDS
ACGTCAAAGCGTTGCTAAAG+AGG 0.462927 2.3:+4401881 MS.gene032189:CDS
GCAACACACTTTGTACTCAA+TGG 0.478846 2.3:+4401218 MS.gene032189:CDS
GTCGTGATCAAGATGGTAAA+TGG 0.481733 2.3:+4400843 MS.gene032189:CDS
GTTGTTGTTATGAAGGAAGT+TGG 0.482632 2.3:+4401328 MS.gene032189:CDS
AACAATGGTTTGAAAGGCTT+AGG 0.484650 2.3:+4401815 MS.gene032189:CDS
TTTGGACACGTAGCATCAAA+TGG 0.490444 2.3:+4401142 MS.gene032189:CDS
ACACTCTTTGAGAAGTTTGG+AGG 0.491229 2.3:-4400867 None:intergenic
GAAGGAAGTTGGTCAAAGAA+TGG 0.494144 2.3:+4401339 MS.gene032189:CDS
TCAACAAATGTCACAACTCT+AGG 0.495147 2.3:-4401556 None:intergenic
GAGGAAAACAATGGTTTGAA+AGG 0.495452 2.3:+4401809 MS.gene032189:CDS
ATGAGAGGTTAATGTTGGAA+AGG 0.501619 2.3:+4401689 MS.gene032189:CDS
GTGACATTTGTTGAGGAAGA+AGG 0.504902 2.3:+4401565 MS.gene032189:CDS
TGGATTTAGTGATGATGTTG+TGG 0.508345 2.3:+4401855 MS.gene032189:CDS
GTGACCAGATTGTGTTGCCT+TGG 0.516301 2.3:-4401017 None:intergenic
TATTGTGATAAAAGAGAGAG+AGG 0.525178 2.3:+4401790 MS.gene032189:CDS
TGAGAGGTTAATGTTGGAAA+GGG 0.526258 2.3:+4401690 MS.gene032189:CDS
GAATTAACGAAAGAGAGATT+AGG 0.532150 2.3:+4401430 MS.gene032189:CDS
TGGTCACTTGTTGTGCCTCA+AGG 0.536151 2.3:+4401916 MS.gene032189:CDS
CGTTTAACATCCAAAGAAGA+TGG 0.546279 2.3:-4400928 None:intergenic
GAGAGATTAGGAATTCAAGA+AGG 0.556850 2.3:+4401442 MS.gene032189:CDS
AAGTAATGAGAGGTTAATGT+TGG 0.563161 2.3:+4401684 MS.gene032189:CDS
GTTAATACTCAAGTTTCAAG+AGG 0.563644 2.3:+4401102 MS.gene032189:CDS
AAAGAATGGAGAAATTTGCT+AGG 0.565724 2.3:+4401353 MS.gene032189:CDS
CAGTTGTTTGGGCATCAACA+TGG 0.572778 2.3:+4401983 MS.gene032189:CDS
TAGAGTTGTGACATTTGTTG+AGG 0.579320 2.3:+4401558 MS.gene032189:CDS
ACGTGTCCAAAAGTTGTCCA+TGG 0.583351 2.3:-4401130 None:intergenic
TTCTTGCTGAATCAAAAGAG+TGG 0.585703 2.3:-4401078 None:intergenic
TTCAACCAACAAGTAATGAG+AGG 0.588837 2.3:+4401674 MS.gene032189:CDS
TTTGATGATGATGAAGATGA+TGG 0.595058 2.3:+4401757 MS.gene032189:CDS
AAAGAGAGAGAGGAAAACAA+TGG 0.597298 2.3:+4401800 MS.gene032189:CDS
TTTCAGGAATGTACCTCACA+TGG 0.601917 2.3:+4401950 MS.gene032189:CDS
TTAACATCCAAAGAAGATGG+TGG 0.611767 2.3:-4400925 None:intergenic
AGTTTCAAGAGGTAAGTCCA+TGG 0.613365 2.3:+4401113 MS.gene032189:CDS
GCCAAAGCTTCTAGAAGAGT+AGG 0.613903 2.3:-4401241 None:intergenic
TAAAGAGGTATCAAGCTGGT+TGG 0.616512 2.3:+4401896 MS.gene032189:CDS
AGGAATGTACCTCACATGGA+AGG 0.622436 2.3:+4401954 MS.gene032189:CDS
TGTCATCGTCGTGATCAAGA+TGG 0.626860 2.3:+4400836 MS.gene032189:CDS
CTGGCTCCTCCTTCCATGTG+AGG 0.635263 2.3:-4401963 None:intergenic
TTGCTAAAGAGGTATCAAGC+TGG 0.647082 2.3:+4401892 MS.gene032189:CDS
AATGTACCTCACATGGAAGG+AGG 0.650550 2.3:+4401957 MS.gene032189:CDS
GAAATATGATCATCTCCTTG+AGG 0.654963 2.3:-4401931 None:intergenic
GATGATGAAGATGATGGTGG+TGG 0.659497 2.3:+4401763 MS.gene032189:CDS
GATGATGATGAAGATGATGG+TGG 0.660969 2.3:+4401760 MS.gene032189:CDS
ACAATTGTGAGCTTAAGGTG+AGG 0.710121 2.3:-4401283 None:intergenic
ACATCATCACTAAATCCACA+AGG 0.718156 2.3:-4401850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTTGAGATGTTAG+AGG + chr2.3:4401645-4401664 MS.gene032189:CDS 20.0%
!!! GAAAATAGCTATTATTTTGA+TGG - chr2.3:4400736-4400755 None:intergenic 20.0%
!! TTTTGATCAATATCTCCATA+AGG - chr2.3:4400965-4400984 None:intergenic 25.0%
!!! GTATTCTTTGAAGTATTGTA+AGG - chr2.3:4400692-4400711 None:intergenic 25.0%
AAGTAATGAGAGGTTAATGT+TGG + chr2.3:4401684-4401703 MS.gene032189:CDS 30.0%
ATTAACCTCTCATTACTTGT+TGG - chr2.3:4401682-4401701 None:intergenic 30.0%
CTAATAACGTTCAACTCAAA+AGG - chr2.3:4401391-4401410 None:intergenic 30.0%
GAATTAACGAAAGAGAGATT+AGG + chr2.3:4401430-4401449 MS.gene032189:CDS 30.0%
GTTAATACTCAAGTTTCAAG+AGG + chr2.3:4401102-4401121 MS.gene032189:CDS 30.0%
TATTGTGATAAAAGAGAGAG+AGG + chr2.3:4401790-4401809 MS.gene032189:CDS 30.0%
! AAAGAATGGAGAAATTTGCT+AGG + chr2.3:4401353-4401372 MS.gene032189:CDS 30.0%
! AGTGTTCAAGAAGCATAATT+AGG + chr2.3:4401713-4401732 MS.gene032189:CDS 30.0%
! GTGTTCAAGAAGCATAATTA+GGG + chr2.3:4401714-4401733 MS.gene032189:CDS 30.0%
! TTCTAGTGTTGTTGTTATGA+AGG + chr2.3:4401321-4401340 MS.gene032189:CDS 30.0%
!! AAGAAGCATAATTAGGGTTT+TGG + chr2.3:4401720-4401739 MS.gene032189:CDS 30.0%
!! TTTGATGATGATGAAGATGA+TGG + chr2.3:4401757-4401776 MS.gene032189:CDS 30.0%
AAAGAGAGAGAGGAAAACAA+TGG + chr2.3:4401800-4401819 MS.gene032189:CDS 35.0%
AACAATGGTTTGAAAGGCTT+AGG + chr2.3:4401815-4401834 MS.gene032189:CDS 35.0%
AACGAGTTATCTTCACCTTA+TGG + chr2.3:4400947-4400966 MS.gene032189:CDS 35.0%
ACATCATCACTAAATCCACA+AGG - chr2.3:4401853-4401872 None:intergenic 35.0%
ATGAGAGGTTAATGTTGGAA+AGG + chr2.3:4401689-4401708 MS.gene032189:CDS 35.0%
CAAAAATCCACCATCTTCTT+TGG + chr2.3:4400918-4400937 MS.gene032189:CDS 35.0%
CAAGGAGATGATCATATTTC+AGG + chr2.3:4401934-4401953 MS.gene032189:CDS 35.0%
CGTTTAACATCCAAAGAAGA+TGG - chr2.3:4400931-4400950 None:intergenic 35.0%
GAAATATGATCATCTCCTTG+AGG - chr2.3:4401934-4401953 None:intergenic 35.0%
GAGAGATTAGGAATTCAAGA+AGG + chr2.3:4401442-4401461 MS.gene032189:CDS 35.0%
GAGGAAAACAATGGTTTGAA+AGG + chr2.3:4401809-4401828 MS.gene032189:CDS 35.0%
TCAACAAATGTCACAACTCT+AGG - chr2.3:4401559-4401578 None:intergenic 35.0%
TGACAACAATTGTGAGCTTA+AGG - chr2.3:4401291-4401310 None:intergenic 35.0%
TGAGAGGTTAATGTTGGAAA+GGG + chr2.3:4401690-4401709 MS.gene032189:CDS 35.0%
TGATGTATGCATCATGTCTA+TGG - chr2.3:4400774-4400793 None:intergenic 35.0%
TTAACATCCAAAGAAGATGG+TGG - chr2.3:4400928-4400947 None:intergenic 35.0%
TTCAACCAACAAGTAATGAG+AGG + chr2.3:4401674-4401693 MS.gene032189:CDS 35.0%
TTCTTGCTGAATCAAAAGAG+TGG - chr2.3:4401081-4401100 None:intergenic 35.0%
! AGGAATGAATTTTCACCTTG+TGG + chr2.3:4401835-4401854 MS.gene032189:CDS 35.0%
! GTTGTTGTTATGAAGGAAGT+TGG + chr2.3:4401328-4401347 MS.gene032189:CDS 35.0%
! TAGAGTTGTGACATTTGTTG+AGG + chr2.3:4401558-4401577 MS.gene032189:CDS 35.0%
! TCTACAAGCTCTATTTTCCA+AGG + chr2.3:4401000-4401019 MS.gene032189:CDS 35.0%
! TGGATTTAGTGATGATGTTG+TGG + chr2.3:4401855-4401874 MS.gene032189:CDS 35.0%
!! GAGAAATTTGCTAGGCTTAT+GGG + chr2.3:4401361-4401380 MS.gene032189:CDS 35.0%
!! GCAATAGCTTTGAATTGTGT+TGG + chr2.3:4401469-4401488 MS.gene032189:CDS 35.0%
!!! GCTATTTTAGAAGCTTTGGA+AGG + chr2.3:4401166-4401185 MS.gene032189:CDS 35.0%
!!! TGGTGCTATTTTAGAAGCTT+TGG + chr2.3:4401162-4401181 MS.gene032189:CDS 35.0%
ACAATTGTGAGCTTAAGGTG+AGG - chr2.3:4401286-4401305 None:intergenic 40.0%
AGTTTCAAGAGGTAAGTCCA+TGG + chr2.3:4401113-4401132 MS.gene032189:CDS 40.0%
GCAACACACTTTGTACTCAA+TGG + chr2.3:4401218-4401237 MS.gene032189:CDS 40.0%
GTCGTGATCAAGATGGTAAA+TGG + chr2.3:4400843-4400862 MS.gene032189:CDS 40.0%
TTTCAGGAATGTACCTCACA+TGG + chr2.3:4401950-4401969 MS.gene032189:CDS 40.0%
TTTGGACACGTAGCATCAAA+TGG + chr2.3:4401142-4401161 MS.gene032189:CDS 40.0%
! ACACTCTTTGAGAAGTTTGG+AGG - chr2.3:4400870-4400889 None:intergenic 40.0%
! GAAGGAAGTTGGTCAAAGAA+TGG + chr2.3:4401339-4401358 MS.gene032189:CDS 40.0%
! GATGATGATGAAGATGATGG+TGG + chr2.3:4401760-4401779 MS.gene032189:CDS 40.0%
! GTAAGTCCATGGACAACTTT+TGG + chr2.3:4401124-4401143 MS.gene032189:CDS 40.0%
! GTGACATTTGTTGAGGAAGA+AGG + chr2.3:4401565-4401584 MS.gene032189:CDS 40.0%
! TGCACACTCTTTGAGAAGTT+TGG - chr2.3:4400873-4400892 None:intergenic 40.0%
! TTTTCCAAGGCAACACAATC+TGG + chr2.3:4401013-4401032 MS.gene032189:CDS 40.0%
!! GGAGAAATTTGCTAGGCTTA+TGG + chr2.3:4401360-4401379 MS.gene032189:CDS 40.0%
!! TAAAGAGGTATCAAGCTGGT+TGG + chr2.3:4401896-4401915 MS.gene032189:CDS 40.0%
!! TTGCTAAAGAGGTATCAAGC+TGG + chr2.3:4401892-4401911 MS.gene032189:CDS 40.0%
AATGTACCTCACATGGAAGG+AGG + chr2.3:4401957-4401976 MS.gene032189:CDS 45.0%
ACGTGTCCAAAAGTTGTCCA+TGG - chr2.3:4401133-4401152 None:intergenic 45.0%
AGGAATGTACCTCACATGGA+AGG + chr2.3:4401954-4401973 MS.gene032189:CDS 45.0%
CAGTTGTTTGGGCATCAACA+TGG + chr2.3:4401983-4402002 MS.gene032189:CDS 45.0%
CATGTTGATGCCCAAACAAC+TGG - chr2.3:4401985-4402004 None:intergenic 45.0%
TGTCATCGTCGTGATCAAGA+TGG + chr2.3:4400836-4400855 MS.gene032189:CDS 45.0%
! GCCAAAGCTTCTAGAAGAGT+AGG - chr2.3:4401244-4401263 None:intergenic 45.0%
! GCCTACTCTTCTAGAAGCTT+TGG + chr2.3:4401240-4401259 MS.gene032189:CDS 45.0%
!! ACGTCAAAGCGTTGCTAAAG+AGG + chr2.3:4401881-4401900 MS.gene032189:CDS 45.0%
!! GATGATGAAGATGATGGTGG+TGG + chr2.3:4401763-4401782 MS.gene032189:CDS 45.0%
GAAGGAGGAGCCAGTTGTTT+GGG + chr2.3:4401972-4401991 MS.gene032189:CDS 50.0%
GTGACCAGATTGTGTTGCCT+TGG - chr2.3:4401020-4401039 None:intergenic 50.0%
!! TGGTCACTTGTTGTGCCTCA+AGG + chr2.3:4401916-4401935 MS.gene032189:CDS 50.0%
GGAAGGAGGAGCCAGTTGTT+TGG + chr2.3:4401971-4401990 MS.gene032189:CDS 55.0%
CTGGCTCCTCCTTCCATGTG+AGG - chr2.3:4401966-4401985 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 4400677 4402014 4400677 ID=MS.gene032189
chr2.3 mRNA 4400677 4402014 4400677 ID=MS.gene032189.t1;Parent=MS.gene032189
chr2.3 exon 4400677 4402014 4400677 ID=MS.gene032189.t1.exon1;Parent=MS.gene032189.t1
chr2.3 CDS 4400677 4402014 4400677 ID=cds.MS.gene032189.t1;Parent=MS.gene032189.t1
Gene Sequence

>MS.gene032189

ATGGAGATAAGTCCTTACAATACTTCAAAGAATACAACGCACTTGAAGAAGTTGAACCATCAAAATAATAGCTATTTTCTTCATGAAGCTTCAACCATAGACATGATGCATACATCATCAAGCAATCATCAAACATCTTCAGATAATTCTAGTGAGACATGTCATCGTCGTGATCAAGATGGTAAATGGTCCTCCAAACTTCTCAAAGAGTGTGCAATTGCAATATCTAATAGAGACTCATCAAAAATCCACCATCTTCTTTGGATGTTAAACGAGTTATCTTCACCTTATGGAGATATTGATCAAAAACTAGCTTCATATTTTCTACAAGCTCTATTTTCCAAGGCAACACAATCTGGTCACAAGTGTTACAAAACACTATCTTCAATCGCTTACAAAAACCACTCTTTTGATTCAGCAAGAAAGTTAATACTCAAGTTTCAAGAGGTAAGTCCATGGACAACTTTTGGACACGTAGCATCAAATGGTGCTATTTTAGAAGCTTTGGAAGGAGAGAAAAAACTTCATATAATTGATATTAGCAACACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTGGCAACAAGAAATGATGAAACTCCTCACCTTAAGCTCACAATTGTTGTCACAAATAATAGTTCTAGTGTTGTTGTTATGAAGGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGCTTATGGGAGTACCTTTTGAGTTGAACGTTATTAGTGATTTGAAACATATACGAGAATTAACGAAAGAGAGATTAGGAATTCAAGAAGGTGAAGCAATAGCTTTGAATTGTGTTGGAGCATTGAGAAAAGTTGAAGTTGAAGAAAGAGAAAGTGTGATTCAATTTTTCAAATCACTTAGTCCTAGAGTTGTGACATTTGTTGAGGAAGAAGGTGATTTTTGTAGTGATGACTTTGTTAAATGTTTTGAAGAGTGTCTTAAGTTTTATAGAATTTATTTTGAGATGTTAGAGGAGAGTTTTCAACCAACAAGTAATGAGAGGTTAATGTTGGAAAGGGAGTGTTCAAGAAGCATAATTAGGGTTTTGGCTTGTGATCATGAATTTGATGATGATGAAGATGATGGTGGTGGTGATTATTGTGATAAAAGAGAGAGAGGAAAACAATGGTTTGAAAGGCTTAGGAATGAATTTTCACCTTGTGGATTTAGTGATGATGTTGTGGATGACGTCAAAGCGTTGCTAAAGAGGTATCAAGCTGGTTGGTCACTTGTTGTGCCTCAAGGAGATGATCATATTTCAGGAATGTACCTCACATGGAAGGAGGAGCCAGTTGTTTGGGCATCAACATGGAAACCCTAG
Protein sequence

>MS.gene032189.t1

MEISPYNTSKNTTHLKKLNHQNNSYFLHEASTIDMMHTSSSNHQTSSDNSSETCHRRDQDGKWSSKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGHKCYKTLSSIAYKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTIVVTNNSSSVVVMKEVGQRMEKFARLMGVPFELNVISDLKHIRELTKERLGIQEGEAIALNCVGALRKVEVEERESVIQFFKSLSPRVVTFVEEEGDFCSDDFVKCFEECLKFYRIYFEMLEESFQPTSNERLMLERECSRSIIRVLACDHEFDDDEDDGGGDYCDKRERGKQWFERLRNEFSPCGFSDDVVDDVKALLKRYQAGWSLVVPQGDDHISGMYLTWKEEPVVWASTWKP