Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032282.t1 | XP_003628534.1 | 98.9 | 375 | 4 | 0 | 1 | 375 | 1 | 375 | 1.10E-210 | 742.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032282.t1 | Q8RWJ7 | 67.8 | 314 | 81 | 6 | 1 | 294 | 1 | 314 | 1.9e-113 | 410.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032282.t1 | G7LDQ2 | 98.9 | 375 | 4 | 0 | 1 | 375 | 1 | 375 | 8.1e-211 | 742.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032282.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032282.t1 | MTR_8g061040 | 98.933 | 375 | 4 | 0 | 1 | 375 | 1 | 375 | 0.0 | 778 |
| MS.gene032282.t1 | MTR_3g110260 | 39.695 | 262 | 126 | 4 | 1 | 260 | 1 | 232 | 3.50e-64 | 204 |
| MS.gene032282.t1 | MTR_8g014075 | 37.984 | 258 | 149 | 3 | 1 | 258 | 1 | 247 | 4.46e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032282.t1 | AT3G18380 | 67.834 | 314 | 81 | 6 | 1 | 294 | 1 | 314 | 1.05e-151 | 432 |
| MS.gene032282.t1 | AT3G18380 | 69.079 | 304 | 77 | 6 | 1 | 287 | 1 | 304 | 9.16e-150 | 427 |
| MS.gene032282.t1 | AT3G18380 | 69.103 | 301 | 79 | 6 | 1 | 287 | 1 | 301 | 3.60e-149 | 425 |
| MS.gene032282.t1 | AT1G15215 | 43.548 | 248 | 134 | 3 | 14 | 259 | 14 | 257 | 7.21e-63 | 202 |
| MS.gene032282.t1 | AT1G15215 | 42.553 | 235 | 129 | 3 | 14 | 246 | 14 | 244 | 4.37e-56 | 185 |
| MS.gene032282.t1 | AT1G15215 | 42.553 | 235 | 129 | 3 | 14 | 246 | 14 | 244 | 6.64e-56 | 184 |
| MS.gene032282.t1 | AT1G15215 | 35.256 | 156 | 92 | 4 | 14 | 167 | 14 | 162 | 9.89e-19 | 82.8 |
Find 89 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGAGTCATTATCCTTCC+TGG | 0.211207 | 8.2:+47145224 | None:intergenic |
| GAAGGCGGGGCCTCCGTTAC+TGG | 0.217756 | 8.2:+47147489 | None:intergenic |
| TGTAATCTGTAATCAGTTTC+AGG | 0.218700 | 8.2:+47140362 | None:intergenic |
| GAAACATTTGTTTGCAAAAC+AGG | 0.257239 | 8.2:+47140191 | None:intergenic |
| AAAATAAGCGATATGCTATA+AGG | 0.259455 | 8.2:-47145310 | MS.gene032282:CDS |
| GTTCCTGCTCCTTCAGCTTC+AGG | 0.261491 | 8.2:-47145188 | MS.gene032282:intron |
| AAGCACTTGCAGACAAGTTT+AGG | 0.288349 | 8.2:-47145570 | MS.gene032282:intron |
| GGTGTGATATTTAACTTTGC+AGG | 0.335452 | 8.2:+47145269 | None:intergenic |
| CTTTCTATCATACAGACATT+TGG | 0.352765 | 8.2:-47142427 | MS.gene032282:CDS |
| ATGGAATTTGAAGCTAAATC+TGG | 0.358674 | 8.2:-47142572 | MS.gene032282:CDS |
| CTCGCACCATGAACATTTGC+TGG | 0.369463 | 8.2:+47140278 | None:intergenic |
| TTTCATTGCAGGTATGGAAT+TGG | 0.369862 | 8.2:-47145337 | MS.gene032282:intron |
| GTTGAGTCATTATCCTTCCT+GGG | 0.392666 | 8.2:+47145225 | None:intergenic |
| CCAGTGAATGCGGCGGTGCT+TGG | 0.419350 | 8.2:+47140089 | None:intergenic |
| ATCTGTATAGGTAACAGAAA+TGG | 0.427116 | 8.2:-47145644 | MS.gene032282:intron |
| GGATCCACATTCATACTTTG+TGG | 0.428698 | 8.2:+47140161 | None:intergenic |
| AAATAAGCGATATGCTATAA+GGG | 0.442347 | 8.2:-47145309 | MS.gene032282:CDS |
| GTAATCTTGCCTTTACGATC+AGG | 0.445890 | 8.2:+47145439 | None:intergenic |
| CCAAGCACCGCCGCATTCAC+TGG | 0.450582 | 8.2:-47140089 | MS.gene032282:CDS |
| GGCTGAGTGAAACGGAAGGC+GGG | 0.454503 | 8.2:+47147475 | None:intergenic |
| GGTTACTAATCCTTCTGAAA+TGG | 0.459416 | 8.2:-47140255 | MS.gene032282:CDS |
| CGCAATCTTCTGCTGATCCG+TGG | 0.463686 | 8.2:+47140310 | None:intergenic |
| GAAGCTGAAGGAGCAGGAAC+AGG | 0.470238 | 8.2:+47145191 | None:intergenic |
| GTCTTTGAGCATCAAGGACA+TGG | 0.475882 | 8.2:+47141614 | None:intergenic |
| ATATTCAAGTTACTTCCCTT+CGG | 0.477909 | 8.2:+47140019 | None:intergenic |
| GACATGGGCATCAAAGTAAA+GGG | 0.481099 | 8.2:+47141630 | None:intergenic |
| CAAATGTCTGTATGATAGAA+AGG | 0.481293 | 8.2:+47142428 | None:intergenic |
| GATCATCCAGCAAATGTTCA+TGG | 0.483799 | 8.2:-47140284 | MS.gene032282:CDS |
| CGGGGCCTCCGTTACTGGGT+GGG | 0.497571 | 8.2:+47147494 | None:intergenic |
| GATTACAGTACAGATGAAAC+AGG | 0.498566 | 8.2:-47145422 | MS.gene032282:intron |
| GGACATGGGCATCAAAGTAA+AGG | 0.499318 | 8.2:+47141629 | None:intergenic |
| GCCAGGAAATCGTGCCGCTT+AGG | 0.503677 | 8.2:-47140400 | MS.gene032282:intron |
| GTCAAATCAGTCCGAGGCAT+GGG | 0.505665 | 8.2:+47145248 | None:intergenic |
| AAGGCGGGGCCTCCGTTACT+GGG | 0.508017 | 8.2:+47147490 | None:intergenic |
| ACAAAAGCTGATGTTCAAGC+TGG | 0.509935 | 8.2:-47140125 | MS.gene032282:CDS |
| CTACCTGAAGCTGAAGGAGC+AGG | 0.516322 | 8.2:+47145185 | None:intergenic |
| GAAGCTAAATCTGGAAGAGA+TGG | 0.517358 | 8.2:-47142563 | MS.gene032282:CDS |
| CCTCGGACTGATTTGACCCC+AGG | 0.520581 | 8.2:-47145242 | MS.gene032282:CDS |
| CAAGTTACTTCCCTTCGGCC+AGG | 0.523928 | 8.2:+47140024 | None:intergenic |
| AGTGAATCACCTGATCGTAA+AGG | 0.536670 | 8.2:-47145448 | MS.gene032282:CDS |
| ACATTTGGAGAGCAGTGATC+CGG | 0.538548 | 8.2:-47142412 | MS.gene032282:intron |
| AGACGGAGGCATGATGTAAG+AGG | 0.539794 | 8.2:-47141595 | MS.gene032282:CDS |
| TGCCGCTTAGGAAGATTTGT+CGG | 0.552355 | 8.2:-47140388 | MS.gene032282:CDS |
| GCAATCTTCTGCTGATCCGT+GGG | 0.554224 | 8.2:+47140311 | None:intergenic |
| GCTGAGTGAAACGGAAGGCG+GGG | 0.554948 | 8.2:+47147476 | None:intergenic |
| ATACCTCGGGCTGAGTGAAA+CGG | 0.555409 | 8.2:+47147467 | None:intergenic |
| GCGGGGCCTCCGTTACTGGG+TGG | 0.555777 | 8.2:+47147493 | None:intergenic |
| GGCTCCTGAAAATTCAGTTA+TGG | 0.559539 | 8.2:-47142591 | MS.gene032282:CDS |
| AAACAAAATATGAGATCACC+AGG | 0.564023 | 8.2:+47141794 | None:intergenic |
| GCTTGAAGAACATCTCGTGC+TGG | 0.567998 | 8.2:+47145589 | None:intergenic |
| CAGCAAATGTTCATGGTGCG+AGG | 0.569607 | 8.2:-47140277 | MS.gene032282:CDS |
| GGGCTGAGTGAAACGGAAGG+CGG | 0.572841 | 8.2:+47147474 | None:intergenic |
| GAATGTGTCGCAGTGCTCCC+TGG | 0.583022 | 8.2:-47141812 | MS.gene032282:CDS |
| ATGGGTCGCCCACCCAGTAA+CGG | 0.584649 | 8.2:-47147502 | MS.gene032282:CDS |
| TAAATATCACACCCATGCCT+CGG | 0.585424 | 8.2:-47145259 | MS.gene032282:CDS |
| ATTAATCCACTCATCTTCCT+CGG | 0.585484 | 8.2:+47141880 | None:intergenic |
| GGTCAAATCAGTCCGAGGCA+TGG | 0.588291 | 8.2:+47145247 | None:intergenic |
| CTACTCAAAACCTGGCCGAA+GGG | 0.589785 | 8.2:-47140034 | MS.gene032282:CDS |
| TCTACTCAAAACCTGGCCGA+AGG | 0.590738 | 8.2:-47140035 | MS.gene032282:CDS |
| GCCTCCGTCTTTGAGCATCA+AGG | 0.590882 | 8.2:+47141608 | None:intergenic |
| TTGAGTCATTATCCTTCCTG+GGG | 0.591497 | 8.2:+47145226 | None:intergenic |
| GCAGGAACAGGAGAAGCTGT+TGG | 0.594628 | 8.2:+47145203 | None:intergenic |
| GACTTCAGGAACACTGCTAG+TGG | 0.595794 | 8.2:+47140058 | None:intergenic |
| TGAAGTCTCTACTCAAAACC+TGG | 0.601287 | 8.2:-47140042 | MS.gene032282:CDS |
| GGCAATGATTCCAGTGAATG+CGG | 0.603755 | 8.2:+47140079 | None:intergenic |
| CACAGTTCAAACAACAGCAA+AGG | 0.607569 | 8.2:-47142615 | MS.gene032282:intron |
| GATTCACATGGCAGAGAGCG+CGG | 0.607948 | 8.2:+47141839 | None:intergenic |
| ATGTCCTTGATGCTCAAAGA+CGG | 0.608783 | 8.2:-47141612 | MS.gene032282:CDS |
| AGCAAATGTTCATGGTGCGA+GGG | 0.609406 | 8.2:-47140276 | MS.gene032282:CDS |
| GGATCAGCAGAAGATTGCGT+TGG | 0.610789 | 8.2:-47140306 | MS.gene032282:CDS |
| AACATTCTACCTGAAGCTGA+AGG | 0.613833 | 8.2:+47145179 | None:intergenic |
| TCCACATTCATACTTTGTGG+TGG | 0.615610 | 8.2:+47140164 | None:intergenic |
| TTGGATCCGAGGAAGATGAG+TGG | 0.615863 | 8.2:-47141886 | MS.gene032282:CDS |
| ACCACCACAAAGTATGAATG+TGG | 0.618600 | 8.2:-47140165 | MS.gene032282:CDS |
| CTTCCGTTTCACTCAGCCCG+AGG | 0.628138 | 8.2:-47147470 | MS.gene032282:intron |
| AGTTCAAACAACAGCAAAGG+CGG | 0.631634 | 8.2:-47142612 | MS.gene032282:CDS |
| TGTGAATGATGCAGCACCCA+CGG | 0.641428 | 8.2:-47140327 | MS.gene032282:CDS |
| CTATGATCACGATCAATCTG+AGG | 0.641893 | 8.2:-47141548 | MS.gene032282:intron |
| AATCTGGAAGAGATGGAGCA+TGG | 0.658527 | 8.2:-47142556 | MS.gene032282:intron |
| CTCCGACAAATCTTCCTAAG+CGG | 0.665093 | 8.2:+47140386 | None:intergenic |
| CCTGGGGTCAAATCAGTCCG+AGG | 0.675720 | 8.2:+47145242 | None:intergenic |
| TCCTTGATGCTCAAAGACGG+AGG | 0.675814 | 8.2:-47141609 | MS.gene032282:CDS |
| GGACTGATTTGACCCCAGGA+AGG | 0.679224 | 8.2:-47145238 | MS.gene032282:CDS |
| GGTCGCCCACCCAGTAACGG+AGG | 0.681262 | 8.2:-47147499 | MS.gene032282:CDS |
| ACACATTCTGATGATTCACA+TGG | 0.682055 | 8.2:+47141827 | None:intergenic |
| TCTTTGAGCATCAAGGACAT+GGG | 0.687814 | 8.2:+47141615 | None:intergenic |
| CTCGGGCTGAGTGAAACGGA+AGG | 0.689498 | 8.2:+47147471 | None:intergenic |
| AATGATTCCAGTGAATGCGG+CGG | 0.736741 | 8.2:+47140082 | None:intergenic |
| AACAAAATATGAGATCACCA+GGG | 0.746917 | 8.2:+47141795 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 47140028 | 47147524 | 47140028 | ID=MS.gene032282 |
| chr8.2 | mRNA | 47140028 | 47147524 | 47140028 | ID=MS.gene032282.t1;Parent=MS.gene032282 |
| chr8.2 | exon | 47147471 | 47147524 | 47147471 | ID=MS.gene032282.t1.exon1;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47147471 | 47147524 | 47147471 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47145571 | 47145656 | 47145571 | ID=MS.gene032282.t1.exon2;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47145571 | 47145656 | 47145571 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47145423 | 47145468 | 47145423 | ID=MS.gene032282.t1.exon3;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47145423 | 47145468 | 47145423 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47145189 | 47145348 | 47145189 | ID=MS.gene032282.t1.exon4;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47145189 | 47145348 | 47145189 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47142557 | 47142632 | 47142557 | ID=MS.gene032282.t1.exon5;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47142557 | 47142632 | 47142557 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47142413 | 47142464 | 47142413 | ID=MS.gene032282.t1.exon6;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47142413 | 47142464 | 47142413 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47141790 | 47141933 | 47141790 | ID=MS.gene032282.t1.exon7;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47141790 | 47141933 | 47141790 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47141549 | 47141668 | 47141549 | ID=MS.gene032282.t1.exon8;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47141549 | 47141668 | 47141549 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| chr8.2 | exon | 47140028 | 47140417 | 47140028 | ID=MS.gene032282.t1.exon9;Parent=MS.gene032282.t1 |
| chr8.2 | CDS | 47140028 | 47140417 | 47140028 | ID=cds.MS.gene032282.t1;Parent=MS.gene032282.t1 |
| Gene Sequence |
| Protein sequence |