Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032352.t1 | XP_013445167.1 | 96 | 322 | 13 | 0 | 1 | 322 | 1 | 322 | 1.20E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032352.t1 | P55197 | 35.6 | 188 | 105 | 4 | 130 | 308 | 25 | 205 | 4.1e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032352.t1 | G7ZV42 | 96.0 | 322 | 13 | 0 | 1 | 322 | 1 | 322 | 8.4e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032352.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032352.t1 | MTR_8g042510 | 95.652 | 322 | 14 | 0 | 1 | 322 | 1 | 322 | 0.0 | 590 |
| MS.gene032352.t1 | MTR_7g021365 | 34.054 | 185 | 102 | 4 | 130 | 302 | 605 | 781 | 5.33e-22 | 97.1 |
| MS.gene032352.t1 | MTR_7g021365 | 34.225 | 187 | 99 | 5 | 130 | 302 | 605 | 781 | 7.92e-22 | 96.7 |
| MS.gene032352.t1 | MTR_7g117355 | 28.017 | 232 | 141 | 9 | 82 | 300 | 483 | 701 | 5.10e-16 | 79.3 |
| MS.gene032352.t1 | MTR_8g027725 | 28.977 | 176 | 110 | 7 | 130 | 300 | 521 | 686 | 3.66e-15 | 76.6 |
| MS.gene032352.t1 | MTR_8g027725 | 28.977 | 176 | 110 | 7 | 130 | 300 | 506 | 671 | 3.96e-15 | 76.6 |
| MS.gene032352.t1 | MTR_3g091310 | 30.114 | 176 | 108 | 7 | 130 | 300 | 632 | 797 | 5.23e-14 | 73.2 |
| MS.gene032352.t1 | MTR_3g091310 | 30.114 | 176 | 108 | 7 | 130 | 300 | 538 | 703 | 5.70e-14 | 73.2 |
| MS.gene032352.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 130 | 300 | 602 | 767 | 3.40e-13 | 70.9 |
| MS.gene032352.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 130 | 300 | 324 | 489 | 4.28e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032352.t1 | AT3G14740 | 48.000 | 325 | 134 | 6 | 22 | 320 | 25 | 340 | 4.89e-97 | 290 |
| MS.gene032352.t1 | AT3G14740 | 48.000 | 325 | 132 | 7 | 22 | 320 | 25 | 338 | 3.87e-95 | 285 |
| MS.gene032352.t1 | AT2G31650 | 37.017 | 181 | 100 | 6 | 130 | 302 | 612 | 786 | 2.41e-27 | 113 |
| MS.gene032352.t1 | AT1G05830 | 34.031 | 191 | 97 | 6 | 130 | 302 | 629 | 808 | 5.95e-26 | 108 |
| MS.gene032352.t1 | AT1G05830 | 34.031 | 191 | 97 | 6 | 130 | 302 | 629 | 808 | 5.95e-26 | 108 |
| MS.gene032352.t1 | AT1G05830 | 34.031 | 191 | 97 | 6 | 130 | 302 | 629 | 808 | 5.95e-26 | 108 |
| MS.gene032352.t1 | AT1G05830 | 34.031 | 191 | 97 | 6 | 130 | 302 | 629 | 808 | 5.95e-26 | 108 |
| MS.gene032352.t1 | AT3G61740 | 32.258 | 155 | 93 | 6 | 130 | 282 | 549 | 693 | 3.05e-15 | 77.0 |
| MS.gene032352.t1 | AT3G61740 | 32.258 | 155 | 93 | 6 | 130 | 282 | 549 | 693 | 3.38e-15 | 77.0 |
| MS.gene032352.t1 | AT5G53430 | 27.111 | 225 | 137 | 10 | 91 | 300 | 563 | 775 | 5.33e-13 | 70.1 |
| MS.gene032352.t1 | AT4G27910 | 30.899 | 178 | 104 | 10 | 130 | 300 | 595 | 760 | 1.02e-12 | 69.3 |
Find 83 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTTTGTATTGAGTATA+AGG | 0.260989 | 8.2:+48643794 | MS.gene032352:CDS |
| CTGCGACGGTTGTAACTTAA+TGG | 0.286202 | 8.2:+48643401 | MS.gene032352:CDS |
| AAAGGTGCTACTGTTGTTGC+TGG | 0.352947 | 8.2:+48643825 | MS.gene032352:CDS |
| TTCTGAACAGAAGTGTGGTT+TGG | 0.363928 | 8.2:+48643743 | MS.gene032352:CDS |
| AATGAATCTTAGTCGTTTGT+TGG | 0.373084 | 8.2:-48642998 | None:intergenic |
| GGACAGAGGGAGCAACAAAT+TGG | 0.380937 | 8.2:-48643528 | None:intergenic |
| TCTGAACAGAAGTGTGGTTT+GGG | 0.382510 | 8.2:+48643744 | MS.gene032352:CDS |
| TTTCGATTGGGGTGGGTGAT+GGG | 0.393075 | 8.2:-48643275 | None:intergenic |
| TCAATCCCTTCTCTCCCTTC+CGG | 0.408085 | 8.2:-48643642 | None:intergenic |
| GTGGGTAGAGAATAAGTAGA+TGG | 0.417816 | 8.2:-48643147 | None:intergenic |
| AACAGATCCCAGAGGGTGAT+TGG | 0.418940 | 8.2:+48643457 | MS.gene032352:CDS |
| GTAAAACCCACTCTCAGATC+TGG | 0.421289 | 8.2:+48643853 | MS.gene032352:CDS |
| ATGAATCTTAGTCGTTTGTT+GGG | 0.423800 | 8.2:-48642997 | None:intergenic |
| CGCAACGATCTTGTATTTCC+CGG | 0.424868 | 8.2:-48644258 | None:intergenic |
| GGGGTGTTGATGATGAAGGT+GGG | 0.444598 | 8.2:-48643122 | None:intergenic |
| AACAAACAACAGATGGAAAG+TGG | 0.447815 | 8.2:+48643571 | MS.gene032352:CDS |
| AGTGGTGAAGGTAGGGTTGA+AGG | 0.449628 | 8.2:-48643188 | None:intergenic |
| TTGGTGCAGAACAAGGGATC+CGG | 0.451306 | 8.2:+48644239 | MS.gene032352:intron |
| TATGTATGTGGGTGTTGTGA+TGG | 0.455586 | 8.2:+48643705 | MS.gene032352:CDS |
| ATGGTCCATGCTTCCTGCTA+TGG | 0.455725 | 8.2:+48643420 | MS.gene032352:CDS |
| CACCAGAGGGTTACCATAGC+AGG | 0.457643 | 8.2:-48643433 | None:intergenic |
| GTTGTTGTAGTGGTGAAGGT+AGG | 0.465130 | 8.2:-48643196 | None:intergenic |
| TTATCAGCAACAACAACAAC+AGG | 0.467398 | 8.2:+48643020 | MS.gene032352:CDS |
| TCACAAAACCAATCACCCTC+TGG | 0.470280 | 8.2:-48643465 | None:intergenic |
| GTGGTGAAGGTAGGGTTGAA+GGG | 0.477161 | 8.2:-48643187 | None:intergenic |
| GTGTTGTGATGGATGTGCTT+TGG | 0.478647 | 8.2:+48643716 | MS.gene032352:CDS |
| CTTTGTATTGAGTATAAGGA+AGG | 0.487792 | 8.2:+48643798 | MS.gene032352:CDS |
| CAGCATTAGCGTCAGTGCTA+TGG | 0.502254 | 8.2:-48643362 | None:intergenic |
| GAGTATAAGGAAGGGAAGAA+AGG | 0.503186 | 8.2:+48643807 | MS.gene032352:CDS |
| TTGTTGTAGTGGTGAAGGTA+GGG | 0.507821 | 8.2:-48643195 | None:intergenic |
| GGGGTGGGTGATGGGAGAGA+AGG | 0.509228 | 8.2:-48643267 | None:intergenic |
| CTGGGATCTGTTTCACCAGA+GGG | 0.510639 | 8.2:-48643446 | None:intergenic |
| CTCCCTCTGTCCTACGAAAG+AGG | 0.511997 | 8.2:+48643539 | MS.gene032352:CDS |
| CAAGTAAAGCACAAACAAGA+TGG | 0.512592 | 8.2:-48643596 | None:intergenic |
| CCACTCTCAGATCTGGGAAA+AGG | 0.515813 | 8.2:+48643860 | MS.gene032352:CDS |
| TTGGAGAAGTGTTATGTATG+TGG | 0.523141 | 8.2:+48643693 | MS.gene032352:CDS |
| CAACCGTCGCAGAAAACGAT+TGG | 0.527443 | 8.2:-48643390 | None:intergenic |
| ATGAGTGGAACAGCATCGGT+TGG | 0.527603 | 8.2:-48643222 | None:intergenic |
| GGATGTTGTTGTAGTGGTGA+AGG | 0.538486 | 8.2:-48643200 | None:intergenic |
| TCGTTTGTTGGGAGGTAGGT+CGG | 0.538544 | 8.2:-48642986 | None:intergenic |
| GTGGATCCGGAAGGGAGAGA+AGG | 0.540934 | 8.2:+48643636 | MS.gene032352:CDS |
| TAAAACCCACTCTCAGATCT+GGG | 0.541497 | 8.2:+48643854 | MS.gene032352:CDS |
| TTAGTCGTTTGTTGGGAGGT+AGG | 0.543612 | 8.2:-48642990 | None:intergenic |
| TGGAGAAGTGTTATGTATGT+GGG | 0.545181 | 8.2:+48643694 | MS.gene032352:CDS |
| TGGTGCAGAACAAGGGATCC+GGG | 0.545804 | 8.2:+48644240 | MS.gene032352:intron |
| TGAGTGGAACAGCATCGGTT+GGG | 0.548135 | 8.2:-48643221 | None:intergenic |
| TTCCTGCTATGGTAACCCTC+TGG | 0.549750 | 8.2:+48643431 | MS.gene032352:CDS |
| GCAATGAAACAAACAACAGA+TGG | 0.550342 | 8.2:+48643564 | MS.gene032352:CDS |
| TCCCTCTTTCGTAGGACAGA+GGG | 0.550747 | 8.2:-48643541 | None:intergenic |
| TGGATCCGGAAGGGAGAGAA+GGG | 0.551432 | 8.2:+48643637 | MS.gene032352:CDS |
| TTCATTGCTCCCTCTTTCGT+AGG | 0.551522 | 8.2:-48643549 | None:intergenic |
| GAATTCGAAGTCGATGATGA+TGG | 0.551848 | 8.2:+48643321 | MS.gene032352:CDS |
| AACCGTCGCAGAAAACGATT+GGG | 0.556636 | 8.2:-48643389 | None:intergenic |
| GTCGATGAGTGGAACAGCAT+CGG | 0.561307 | 8.2:-48643226 | None:intergenic |
| CACAAAACCAATCACCCTCT+GGG | 0.561651 | 8.2:-48643464 | None:intergenic |
| AAGGATTGTATTCGACATTG+AGG | 0.569887 | 8.2:-48643248 | None:intergenic |
| TCCCTCTGTCCTACGAAAGA+GGG | 0.571477 | 8.2:+48643540 | MS.gene032352:CDS |
| GTTCTAAGATTCCACAGAAG+AGG | 0.573200 | 8.2:+48643667 | MS.gene032352:CDS |
| TTCTCCAACCACCTCTTCTG+TGG | 0.573745 | 8.2:-48643678 | None:intergenic |
| GATTCCACAGAAGAGGTGGT+TGG | 0.573938 | 8.2:+48643674 | MS.gene032352:CDS |
| CGGTTGGGATGTTGTTGTAG+TGG | 0.577959 | 8.2:-48643206 | None:intergenic |
| AATCTTAGTCGTTTGTTGGG+AGG | 0.581292 | 8.2:-48642994 | None:intergenic |
| GTAGAGAATAAGTAGATGGT+GGG | 0.581521 | 8.2:-48643143 | None:intergenic |
| CTAAGATTCCACAGAAGAGG+TGG | 0.584859 | 8.2:+48643670 | MS.gene032352:CDS |
| GGTAGAGAATAAGTAGATGG+TGG | 0.587962 | 8.2:-48643144 | None:intergenic |
| GGTTACCATAGCAGGAAGCA+TGG | 0.589460 | 8.2:-48643425 | None:intergenic |
| GGGTGTTGATGATGAAGGTG+GGG | 0.592237 | 8.2:-48643121 | None:intergenic |
| GTTTGTTCTGAACAGAAGTG+TGG | 0.601379 | 8.2:+48643738 | MS.gene032352:CDS |
| AAGTAAAGCACAAACAAGAT+GGG | 0.608555 | 8.2:-48643595 | None:intergenic |
| CTCCCTCTTTCGTAGGACAG+AGG | 0.612913 | 8.2:-48643542 | None:intergenic |
| TCTGGGATCTGTTTCACCAG+AGG | 0.613157 | 8.2:-48643447 | None:intergenic |
| TATTACTTGTGGAATCAAAG+AGG | 0.618592 | 8.2:+48643773 | MS.gene032352:CDS |
| ACAAACAACAGATGGAAAGT+GGG | 0.626115 | 8.2:+48643572 | MS.gene032352:CDS |
| AGAGAATAAGTAGATGGTGG+GGG | 0.628297 | 8.2:-48643141 | None:intergenic |
| TTTGTATTGAGTATAAGGAA+GGG | 0.629492 | 8.2:+48643799 | MS.gene032352:CDS |
| GTGAAGGTAGGGTTGAAGGG+CGG | 0.630745 | 8.2:-48643184 | None:intergenic |
| GAGGGAGCAACAAATTGGAT+CGG | 0.633961 | 8.2:-48643523 | None:intergenic |
| TAGAGAATAAGTAGATGGTG+GGG | 0.637260 | 8.2:-48643142 | None:intergenic |
| TAGCACTGACGCTAATGCTG+AGG | 0.654856 | 8.2:+48643365 | MS.gene032352:CDS |
| CTGGTGAAACAGATCCCAGA+GGG | 0.654987 | 8.2:+48643450 | MS.gene032352:CDS |
| TCGACATTGAGGTCGATGAG+TGG | 0.657082 | 8.2:-48643237 | None:intergenic |
| CGGGAAATACAAGATCGTTG+CGG | 0.728498 | 8.2:+48644259 | MS.gene032352:CDS |
| TCTGGTGAAACAGATCCCAG+AGG | 0.763846 | 8.2:+48643449 | MS.gene032352:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAGTTTTTAATTAACAA+TGG | + | chr8.2:48643930-48643949 | MS.gene032352:intron | 10.0% |
| !! | TATTGTTAGTGAATTATTGA+AGG | + | chr8.2:48644160-48644179 | MS.gene032352:intron | 20.0% |
| !!! | CAAGTTTAATTTGATTTTGT+TGG | + | chr8.2:48644220-48644239 | MS.gene032352:intron | 20.0% |
| !!! | CTAAATTTTATCTGGTTTTA+AGG | + | chr8.2:48644070-48644089 | MS.gene032352:intron | 20.0% |
| ! | TTTGTATTGAGTATAAGGAA+GGG | + | chr8.2:48643799-48643818 | MS.gene032352:CDS | 25.0% |
| !! | GTCAATGACTAAATTTTATC+TGG | + | chr8.2:48644062-48644081 | MS.gene032352:intron | 25.0% |
| !!! | TTATTGAAGGCTAACTTTTT+TGG | + | chr8.2:48644173-48644192 | MS.gene032352:intron | 25.0% |
| !!! | TTTGAGATTGTTTTTCGATT+GGG | - | chr8.2:48643290-48643309 | None:intergenic | 25.0% |
| !!! | TTTTGAGATTGTTTTTCGAT+TGG | - | chr8.2:48643291-48643310 | None:intergenic | 25.0% |
| AAGTAAAGCACAAACAAGAT+GGG | - | chr8.2:48643598-48643617 | None:intergenic | 30.0% | |
| AATGAATCTTAGTCGTTTGT+TGG | - | chr8.2:48643001-48643020 | None:intergenic | 30.0% | |
| ATGAATCTTAGTCGTTTGTT+GGG | - | chr8.2:48643000-48643019 | None:intergenic | 30.0% | |
| CGAAAAACAATCTCAAAAAC+AGG | + | chr8.2:48643293-48643312 | MS.gene032352:CDS | 30.0% | |
| CTTTGTATTGAGTATAAGGA+AGG | + | chr8.2:48643798-48643817 | MS.gene032352:CDS | 30.0% | |
| GGATCTTTGTATTGAGTATA+AGG | + | chr8.2:48643794-48643813 | MS.gene032352:CDS | 30.0% | |
| TATTACTTGTGGAATCAAAG+AGG | + | chr8.2:48643773-48643792 | MS.gene032352:CDS | 30.0% | |
| ! | TTGGGTTTTCATATTACTTG+TGG | + | chr8.2:48643762-48643781 | MS.gene032352:CDS | 30.0% |
| !! | TTGAGATTGTTTTTCGATTG+GGG | - | chr8.2:48643289-48643308 | None:intergenic | 30.0% |
| !!! | GCGGTTATTCTTTTTTTTGT+GGG | - | chr8.2:48643168-48643187 | None:intergenic | 30.0% |
| AACAAACAACAGATGGAAAG+TGG | + | chr8.2:48643571-48643590 | MS.gene032352:CDS | 35.0% | |
| AAGGATTGTATTCGACATTG+AGG | - | chr8.2:48643251-48643270 | None:intergenic | 35.0% | |
| ACAAACAACAGATGGAAAGT+GGG | + | chr8.2:48643572-48643591 | MS.gene032352:CDS | 35.0% | |
| CAAGTAAAGCACAAACAAGA+TGG | - | chr8.2:48643599-48643618 | None:intergenic | 35.0% | |
| GCAATGAAACAAACAACAGA+TGG | + | chr8.2:48643564-48643583 | MS.gene032352:CDS | 35.0% | |
| GTAGAGAATAAGTAGATGGT+GGG | - | chr8.2:48643146-48643165 | None:intergenic | 35.0% | |
| TAGAGAATAAGTAGATGGTG+GGG | - | chr8.2:48643145-48643164 | None:intergenic | 35.0% | |
| TTATCAGCAACAACAACAAC+AGG | + | chr8.2:48643020-48643039 | MS.gene032352:CDS | 35.0% | |
| ! | ATTTTGTTGGTGCAGAACAA+GGG | + | chr8.2:48644233-48644252 | MS.gene032352:intron | 35.0% |
| !! | TGGAGAAGTGTTATGTATGT+GGG | + | chr8.2:48643694-48643713 | MS.gene032352:CDS | 35.0% |
| !! | TTGGAGAAGTGTTATGTATG+TGG | + | chr8.2:48643693-48643712 | MS.gene032352:CDS | 35.0% |
| !!! | ACGAGATTCTTTGCGTTTTT+TGG | - | chr8.2:48643082-48643101 | None:intergenic | 35.0% |
| !!! | AGATTCTTTGCGTTTTTTGG+TGG | - | chr8.2:48643079-48643098 | None:intergenic | 35.0% |
| !!! | GATTCTTTGCGTTTTTTGGT+GGG | - | chr8.2:48643078-48643097 | None:intergenic | 35.0% |
| !!! | GGCGGTTATTCTTTTTTTTG+TGG | - | chr8.2:48643169-48643188 | None:intergenic | 35.0% |
| !!! | TGAAGTGTTTTTTGTGGATC+CGG | + | chr8.2:48643623-48643642 | MS.gene032352:CDS | 35.0% |
| GAATTCGAAGTCGATGATGA+TGG | + | chr8.2:48643321-48643340 | MS.gene032352:CDS | 40.0% | |
| GAGTATAAGGAAGGGAAGAA+AGG | + | chr8.2:48643807-48643826 | MS.gene032352:CDS | 40.0% | |
| GGATCCACAAAAAACACTTC+AGG | - | chr8.2:48643624-48643643 | None:intergenic | 40.0% | |
| GGTAGAGAATAAGTAGATGG+TGG | - | chr8.2:48643147-48643166 | None:intergenic | 40.0% | |
| GTGGGTAGAGAATAAGTAGA+TGG | - | chr8.2:48643150-48643169 | None:intergenic | 40.0% | |
| TAAAACCCACTCTCAGATCT+GGG | + | chr8.2:48643854-48643873 | MS.gene032352:CDS | 40.0% | |
| TTGTTGTAGTGGTGAAGGTA+GGG | - | chr8.2:48643198-48643217 | None:intergenic | 40.0% | |
| ! | AATCTTAGTCGTTTGTTGGG+AGG | - | chr8.2:48642997-48643016 | None:intergenic | 40.0% |
| ! | AGAGAATAAGTAGATGGTGG+GGG | - | chr8.2:48643144-48643163 | None:intergenic | 40.0% |
| ! | GATTTTGTTGGTGCAGAACA+AGG | + | chr8.2:48644232-48644251 | MS.gene032352:intron | 40.0% |
| ! | GTTTGTTCTGAACAGAAGTG+TGG | + | chr8.2:48643738-48643757 | MS.gene032352:CDS | 40.0% |
| ! | TATGTATGTGGGTGTTGTGA+TGG | + | chr8.2:48643705-48643724 | MS.gene032352:CDS | 40.0% |
| ! | TCTGAACAGAAGTGTGGTTT+GGG | + | chr8.2:48643744-48643763 | MS.gene032352:CDS | 40.0% |
| ! | TTCTGAACAGAAGTGTGGTT+TGG | + | chr8.2:48643743-48643762 | MS.gene032352:CDS | 40.0% |
| !! | AGATTGTTTTTCGATTGGGG+TGG | - | chr8.2:48643286-48643305 | None:intergenic | 40.0% |
| !! | GATTGTTTTTCGATTGGGGT+GGG | - | chr8.2:48643285-48643304 | None:intergenic | 40.0% |
| !! | GTTCTAAGATTCCACAGAAG+AGG | + | chr8.2:48643667-48643686 | MS.gene032352:CDS | 40.0% |
| !!! | GAAGGCTAACTTTTTTGGCT+TGG | + | chr8.2:48644178-48644197 | MS.gene032352:intron | 40.0% |
| !!! | TGTGCCTGAAGTGTTTTTTG+TGG | + | chr8.2:48643617-48643636 | MS.gene032352:CDS | 40.0% |
| !!! | TGTTTTTTGTGGATCCGGAA+GGG | + | chr8.2:48643628-48643647 | MS.gene032352:CDS | 40.0% |
| AACCGTCGCAGAAAACGATT+GGG | - | chr8.2:48643392-48643411 | None:intergenic | 45.0% | |
| CACAAAACCAATCACCCTCT+GGG | - | chr8.2:48643467-48643486 | None:intergenic | 45.0% | |
| CGCAACGATCTTGTATTTCC+CGG | - | chr8.2:48644261-48644280 | None:intergenic | 45.0% | |
| CGGGAAATACAAGATCGTTG+CGG | + | chr8.2:48644259-48644278 | MS.gene032352:CDS | 45.0% | |
| CTAAGATTCCACAGAAGAGG+TGG | + | chr8.2:48643670-48643689 | MS.gene032352:CDS | 45.0% | |
| CTGCGACGGTTGTAACTTAA+TGG | + | chr8.2:48643401-48643420 | MS.gene032352:CDS | 45.0% | |
| GAGGGAGCAACAAATTGGAT+CGG | - | chr8.2:48643526-48643545 | None:intergenic | 45.0% | |
| GGATGTTGTTGTAGTGGTGA+AGG | - | chr8.2:48643203-48643222 | None:intergenic | 45.0% | |
| GTAAAACCCACTCTCAGATC+TGG | + | chr8.2:48643853-48643872 | MS.gene032352:CDS | 45.0% | |
| GTTGTTGTAGTGGTGAAGGT+AGG | - | chr8.2:48643199-48643218 | None:intergenic | 45.0% | |
| TCACAAAACCAATCACCCTC+TGG | - | chr8.2:48643468-48643487 | None:intergenic | 45.0% | |
| TTCATTGCTCCCTCTTTCGT+AGG | - | chr8.2:48643552-48643571 | None:intergenic | 45.0% | |
| ! | AGGTAGGTCGGTGATGTTTT+TGG | - | chr8.2:48642977-48642996 | None:intergenic | 45.0% |
| ! | CTTTTCCCAGATCTGAGAGT+GGG | - | chr8.2:48643862-48643881 | None:intergenic | 45.0% |
| ! | TTAGTCGTTTGTTGGGAGGT+AGG | - | chr8.2:48642993-48643012 | None:intergenic | 45.0% |
| !! | AAAGGTGCTACTGTTGTTGC+TGG | + | chr8.2:48643825-48643844 | MS.gene032352:CDS | 45.0% |
| !! | GTGTTGTGATGGATGTGCTT+TGG | + | chr8.2:48643716-48643735 | MS.gene032352:CDS | 45.0% |
| !!! | GTGTTTTTTGTGGATCCGGA+AGG | + | chr8.2:48643627-48643646 | MS.gene032352:CDS | 45.0% |
| AACAGATCCCAGAGGGTGAT+TGG | + | chr8.2:48643457-48643476 | MS.gene032352:CDS | 50.0% | |
| AGTGGTGAAGGTAGGGTTGA+AGG | - | chr8.2:48643191-48643210 | None:intergenic | 50.0% | |
| ATGGTCCATGCTTCCTGCTA+TGG | + | chr8.2:48643420-48643439 | MS.gene032352:CDS | 50.0% | |
| CAACCGTCGCAGAAAACGAT+TGG | - | chr8.2:48643393-48643412 | None:intergenic | 50.0% | |
| CAGCATTAGCGTCAGTGCTA+TGG | - | chr8.2:48643365-48643384 | None:intergenic | 50.0% | |
| CCACTCTCAGATCTGGGAAA+AGG | + | chr8.2:48643860-48643879 | MS.gene032352:CDS | 50.0% | |
| CGGTTGGGATGTTGTTGTAG+TGG | - | chr8.2:48643209-48643228 | None:intergenic | 50.0% | |
| CTGGGATCTGTTTCACCAGA+GGG | - | chr8.2:48643449-48643468 | None:intergenic | 50.0% | |
| CTGGTGAAACAGATCCCAGA+GGG | + | chr8.2:48643450-48643469 | MS.gene032352:CDS | 50.0% | |
| GATTCCACAGAAGAGGTGGT+TGG | + | chr8.2:48643674-48643693 | MS.gene032352:CDS | 50.0% | |
| GGACAGAGGGAGCAACAAAT+TGG | - | chr8.2:48643531-48643550 | None:intergenic | 50.0% | |
| GGTTACCATAGCAGGAAGCA+TGG | - | chr8.2:48643428-48643447 | None:intergenic | 50.0% | |
| GTCGATGAGTGGAACAGCAT+CGG | - | chr8.2:48643229-48643248 | None:intergenic | 50.0% | |
| GTGGTGAAGGTAGGGTTGAA+GGG | - | chr8.2:48643190-48643209 | None:intergenic | 50.0% | |
| TCAATCCCTTCTCTCCCTTC+CGG | - | chr8.2:48643645-48643664 | None:intergenic | 50.0% | |
| TCCCTCTGTCCTACGAAAGA+GGG | + | chr8.2:48643540-48643559 | MS.gene032352:CDS | 50.0% | |
| TCCCTCTTTCGTAGGACAGA+GGG | - | chr8.2:48643544-48643563 | None:intergenic | 50.0% | |
| TCGACATTGAGGTCGATGAG+TGG | - | chr8.2:48643240-48643259 | None:intergenic | 50.0% | |
| TCTGGTGAAACAGATCCCAG+AGG | + | chr8.2:48643449-48643468 | MS.gene032352:CDS | 50.0% | |
| TTCCTGCTATGGTAACCCTC+TGG | + | chr8.2:48643431-48643450 | MS.gene032352:CDS | 50.0% | |
| TTCTCCAACCACCTCTTCTG+TGG | - | chr8.2:48643681-48643700 | None:intergenic | 50.0% | |
| TTGGTGCAGAACAAGGGATC+CGG | + | chr8.2:48644239-48644258 | MS.gene032352:intron | 50.0% | |
| TTTCGATTGGGGTGGGTGAT+GGG | - | chr8.2:48643278-48643297 | None:intergenic | 50.0% | |
| ! | CCTTTTCCCAGATCTGAGAG+TGG | - | chr8.2:48643863-48643882 | None:intergenic | 50.0% |
| ! | GACCCAATCGTTTTCTGCGA+CGG | + | chr8.2:48643387-48643406 | MS.gene032352:CDS | 50.0% |
| ! | TCGTTTGTTGGGAGGTAGGT+CGG | - | chr8.2:48642989-48643008 | None:intergenic | 50.0% |
| ! | TCTGGGATCTGTTTCACCAG+AGG | - | chr8.2:48643450-48643469 | None:intergenic | 50.0% |
| ! | TTTTCGATTGGGGTGGGTGA+TGG | - | chr8.2:48643279-48643298 | None:intergenic | 50.0% |
| !! | ATGAGTGGAACAGCATCGGT+TGG | - | chr8.2:48643225-48643244 | None:intergenic | 50.0% |
| !! | GGGGTGTTGATGATGAAGGT+GGG | - | chr8.2:48643125-48643144 | None:intergenic | 50.0% |
| !! | GGGTGTTGATGATGAAGGTG+GGG | - | chr8.2:48643124-48643143 | None:intergenic | 50.0% |
| !! | TAGCACTGACGCTAATGCTG+AGG | + | chr8.2:48643365-48643384 | MS.gene032352:CDS | 50.0% |
| !! | TGAGTGGAACAGCATCGGTT+GGG | - | chr8.2:48643224-48643243 | None:intergenic | 50.0% |
| CACCAGAGGGTTACCATAGC+AGG | - | chr8.2:48643436-48643455 | None:intergenic | 55.0% | |
| CTCCCTCTGTCCTACGAAAG+AGG | + | chr8.2:48643539-48643558 | MS.gene032352:CDS | 55.0% | |
| CTCCCTCTTTCGTAGGACAG+AGG | - | chr8.2:48643545-48643564 | None:intergenic | 55.0% | |
| GTGAAGGTAGGGTTGAAGGG+CGG | - | chr8.2:48643187-48643206 | None:intergenic | 55.0% | |
| TGGATCCGGAAGGGAGAGAA+GGG | + | chr8.2:48643637-48643656 | MS.gene032352:CDS | 55.0% | |
| TGGTGCAGAACAAGGGATCC+GGG | + | chr8.2:48644240-48644259 | MS.gene032352:intron | 55.0% | |
| !! | GGGGGTGTTGATGATGAAGG+TGG | - | chr8.2:48643126-48643145 | None:intergenic | 55.0% |
| !! | GGTGGGGGTGTTGATGATGA+AGG | - | chr8.2:48643129-48643148 | None:intergenic | 55.0% |
| GTGGATCCGGAAGGGAGAGA+AGG | + | chr8.2:48643636-48643655 | MS.gene032352:CDS | 60.0% | |
| !! | GGGGTGGGTGATGGGAGAGA+AGG | - | chr8.2:48643270-48643289 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 48642964 | 48644298 | 48642964 | ID=MS.gene032352 |
| chr8.2 | mRNA | 48642964 | 48644298 | 48642964 | ID=MS.gene032352.t1;Parent=MS.gene032352 |
| chr8.2 | exon | 48642964 | 48643881 | 48642964 | ID=MS.gene032352.t1.exon1;Parent=MS.gene032352.t1 |
| chr8.2 | CDS | 48642964 | 48643881 | 48642964 | ID=cds.MS.gene032352.t1;Parent=MS.gene032352.t1 |
| chr8.2 | exon | 48644248 | 48644298 | 48644248 | ID=MS.gene032352.t1.exon2;Parent=MS.gene032352.t1 |
| chr8.2 | CDS | 48644248 | 48644298 | 48644248 | ID=cds.MS.gene032352.t1;Parent=MS.gene032352.t1 |
| Gene Sequence |
| Protein sequence |
