Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032382.t1 | KEH19246.1 | 87.3 | 165 | 13 | 1 | 27 | 191 | 18 | 174 | 2.90E-69 | 271.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032382.t1 | A0A072TPV3 | 87.3 | 165 | 13 | 1 | 27 | 191 | 18 | 174 | 2.1e-69 | 271.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032382.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032382.t1 | MTR_8g445680 | 87.273 | 165 | 13 | 1 | 27 | 191 | 18 | 174 | 1.26e-101 | 290 |
| MS.gene032382.t1 | MTR_8g009730 | 35.028 | 177 | 87 | 7 | 28 | 177 | 20 | 195 | 9.87e-24 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTCGCCAGTACATTTA+TGG | 0.169458 | 8.2:-49197642 | MS.gene032382:CDS |
| CAAAGTGCTCTTAGAAGTTT+AGG | 0.233419 | 8.2:-49197821 | MS.gene032382:CDS |
| GAATAGTGCTTTCCTCTTAA+AGG | 0.283321 | 8.2:+49197658 | None:intergenic |
| TCGGATCTTGCATATTCATT+TGG | 0.326460 | 8.2:+49197298 | None:intergenic |
| TAGTTACAAGATGGCCTTCA+TGG | 0.374458 | 8.2:-49197570 | MS.gene032382:CDS |
| TAGTTACAAGATGGCCTTCA+TGG | 0.374458 | 8.2:-49199501 | MS.gene032382:CDS |
| TGTTGCACCTTGTCTGTCAT+AGG | 0.379085 | 8.2:+49197760 | None:intergenic |
| ACGCCAAGATGGTCGTCAAT+TGG | 0.394789 | 8.2:-49197702 | MS.gene032382:CDS |
| AAGAGATATCTTCCTTTAAG+AGG | 0.405380 | 8.2:-49197670 | MS.gene032382:CDS |
| TGCAATAATGATTGTGAATA+CGG | 0.437294 | 8.2:-49197878 | MS.gene032382:CDS |
| CTTGTAACTACGAGACATGA+TGG | 0.480223 | 8.2:+49197583 | None:intergenic |
| AATGATGACTTGCTTACCCT+TGG | 0.482188 | 8.2:+49197366 | None:intergenic |
| CATCTTGTAAATTTCCATGA+AGG | 0.485976 | 8.2:+49197556 | None:intergenic |
| CATCTTGTAAATTTCCATGA+AGG | 0.485976 | 8.2:+49199487 | None:intergenic |
| GATCTTGCATATTCATTTGG+AGG | 0.493998 | 8.2:+49197301 | None:intergenic |
| TCTCCAATTGACGACCATCT+TGG | 0.509670 | 8.2:+49197699 | None:intergenic |
| TCTCCACTTTCACTAGCGGT+TGG | 0.512325 | 8.2:+49197524 | None:intergenic |
| TCTCCACTTTCACTAGCGGT+TGG | 0.512325 | 8.2:+49199455 | None:intergenic |
| ATCTAACATCATGAGTATGA+TGG | 0.517001 | 8.2:-49197795 | MS.gene032382:CDS |
| AGATGGTCGTCAATTGGAGA+TGG | 0.520285 | 8.2:-49197696 | MS.gene032382:CDS |
| GTTATACAGCAATGCATCCA+AGG | 0.520577 | 8.2:-49197383 | MS.gene032382:intron |
| ACTAACCACAATCTACTCTT+CGG | 0.522583 | 8.2:+49197279 | None:intergenic |
| TGAAAATCTTCATTTCTATG+TGG | 0.529192 | 8.2:+49197842 | None:intergenic |
| ATCTTGCATATTCATTTGGA+GGG | 0.532675 | 8.2:+49197302 | None:intergenic |
| ACAAAAGGCCATAAATGTAC+TGG | 0.537910 | 8.2:+49197634 | None:intergenic |
| ATTCCAACCGCTAGTGAAAG+TGG | 0.538453 | 8.2:-49197527 | MS.gene032382:CDS |
| ATTCCAACCGCTAGTGAAAG+TGG | 0.538453 | 8.2:-49199458 | MS.gene032382:CDS |
| CTTAGCATAATACCTACAAA+AGG | 0.549427 | 8.2:+49197619 | None:intergenic |
| TTGTAACTACGAGACATGAT+GGG | 0.552157 | 8.2:+49197584 | None:intergenic |
| TTCTCAGTCAAGGTCGAGCA+TGG | 0.581974 | 8.2:-49197730 | MS.gene032382:CDS |
| ATGGAAATTTACAAGATGAA+CGG | 0.585442 | 8.2:-49197551 | MS.gene032382:CDS |
| ATGGAAATTTACAAGATGAA+CGG | 0.585442 | 8.2:-49199482 | MS.gene032382:CDS |
| TTCTGAAGACAGTGATGACA+TGG | 0.593346 | 8.2:-49197332 | MS.gene032382:CDS |
| CATGTCTCGTAGTTACAAGA+TGG | 0.593567 | 8.2:-49197579 | MS.gene032382:CDS |
| CATGTCTCGTAGTTACAAGA+TGG | 0.593567 | 8.2:-49199510 | MS.gene032382:CDS |
| GCATGGCTACGACGCCAAGA+TGG | 0.599303 | 8.2:-49197713 | MS.gene032382:CDS |
| GATGGTCGTCAATTGGAGAT+GGG | 0.600387 | 8.2:-49197695 | MS.gene032382:CDS |
| GGATTCTCCACTTTCACTAG+CGG | 0.605182 | 8.2:+49197520 | None:intergenic |
| GGATTCTCCACTTTCACTAG+CGG | 0.605182 | 8.2:+49199451 | None:intergenic |
| CTACGAGACATGATGGGGAA+TGG | 0.605683 | 8.2:+49197590 | None:intergenic |
| TTATACAGCAATGCATCCAA+GGG | 0.613566 | 8.2:-49197382 | MS.gene032382:intron |
| CATGAGTATGATGGAAAGTG+TGG | 0.625793 | 8.2:-49197786 | MS.gene032382:CDS |
| CTAGTGAAAGTGGAGAATCC+AGG | 0.632875 | 8.2:-49197517 | MS.gene032382:intron |
| CTAGTGAAAGTGGAGAATCC+AGG | 0.632875 | 8.2:-49199448 | MS.gene032382:intron |
| ACAAACTCGATTCTCAGTCA+AGG | 0.641162 | 8.2:-49197740 | MS.gene032382:CDS |
| TGTAACTACGAGACATGATG+GGG | 0.692794 | 8.2:+49197585 | None:intergenic |
| GTGGAAACCTATGACAGACA+AGG | 0.716652 | 8.2:-49197767 | MS.gene032382:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAGTAATTTATATATA+TGG | - | chr8.2:49198709-49198728 | MS.gene032382:intron | 10.0% |
| !! | CTCTATATAAAGAAAAAAAT+CGG | + | chr8.2:49198696-49198715 | None:intergenic | 15.0% |
| !! | TTTCTTGTATGTTAAAAAAT+GGG | - | chr8.2:49198152-49198171 | MS.gene032382:intron | 15.0% |
| !! | ATATAAATATCTATGTACGT+TGG | - | chr8.2:49198807-49198826 | MS.gene032382:intron | 20.0% |
| !! | GTTTCTTGTATGTTAAAAAA+TGG | - | chr8.2:49198151-49198170 | MS.gene032382:intron | 20.0% |
| !!! | CTGAAAAATACCTTTTATAT+TGG | + | chr8.2:49198644-49198663 | None:intergenic | 20.0% |
| ! | AAATTGTAATTACCCACATA+CGG | - | chr8.2:49198177-49198196 | MS.gene032382:intron | 25.0% |
| ! | ACAACGAAAACCAATATAAA+AGG | - | chr8.2:49198631-49198650 | MS.gene032382:intron | 25.0% |
| ! | AGAAAGAGATAGTAGTTTAA+AGG | - | chr8.2:49198372-49198391 | MS.gene032382:intron | 25.0% |
| ! | AGTACAATATAGAAATTACC+TGG | + | chr8.2:49199304-49199323 | None:intergenic | 25.0% |
| ! | ATGGAAATTTACAAGATGAA+CGG | - | chr8.2:49197318-49197337 | MS.gene032382:CDS | 25.0% |
| ! | GTCAAAGGAATCTTAATATA+TGG | + | chr8.2:49198755-49198774 | None:intergenic | 25.0% |
| ! | TATGGATTTACAAATGTCTA+TGG | + | chr8.2:49198841-49198860 | None:intergenic | 25.0% |
| ! | TGAAAATCTTCATTTCTATG+TGG | + | chr8.2:49198961-49198980 | None:intergenic | 25.0% |
| ! | TGCAATAATGATTGTGAATA+CGG | - | chr8.2:49198922-49198941 | MS.gene032382:intron | 25.0% |
| !! | TGATATAAAGAGTGTGTTAT+AGG | + | chr8.2:49199391-49199410 | None:intergenic | 25.0% |
| !!! | TTTTATATTGGTTTTCGTTG+TGG | + | chr8.2:49198632-49198651 | None:intergenic | 25.0% |
| AAGAGATAGTAGTTTAAAGG+TGG | - | chr8.2:49198375-49198394 | MS.gene032382:intron | 30.0% | |
| AAGAGATATCTTCCTTTAAG+AGG | - | chr8.2:49199130-49199149 | MS.gene032382:intron | 30.0% | |
| AATGCAATCACATATATGCA+CGG | - | chr8.2:49197736-49197755 | MS.gene032382:CDS | 30.0% | |
| ACTGATCGTACTTGATTAAA+AGG | - | chr8.2:49198204-49198223 | MS.gene032382:intron | 30.0% | |
| AGAGATAGTAGTTTAAAGGT+GGG | - | chr8.2:49198376-49198395 | MS.gene032382:intron | 30.0% | |
| AGTACAATATAGAGATTACC+TGG | + | chr8.2:49197373-49197392 | None:intergenic | 30.0% | |
| ATCTAACATCATGAGTATGA+TGG | - | chr8.2:49199005-49199024 | MS.gene032382:intron | 30.0% | |
| ATCTTGCATATTCATTTGGA+GGG | + | chr8.2:49197570-49197589 | None:intergenic | 30.0% | |
| CATATATGTGATTGCATTGT+TGG | + | chr8.2:49197690-49197709 | None:intergenic | 30.0% | |
| CATCTTGTAAATTTCCATGA+AGG | + | chr8.2:49197316-49197335 | None:intergenic | 30.0% | |
| CTTAGCATAATACCTACAAA+AGG | + | chr8.2:49199184-49199203 | None:intergenic | 30.0% | |
| TAAAACACTATGATGACCAA+CGG | + | chr8.2:49198114-49198133 | None:intergenic | 30.0% | |
| TTATACAACAATGCATCCAA+GGG | - | chr8.2:49197487-49197506 | MS.gene032382:intron | 30.0% | |
| ! | TTTTAATCAAGTACGATCAG+TGG | + | chr8.2:49198205-49198224 | None:intergenic | 30.0% |
| ! | TTTTAGCGTTTGGAAAGATT+TGG | - | chr8.2:49198129-49198148 | MS.gene032382:intron | 30.0% |
| !! | ATTTGGGCTTTGTTTGTATT+GGG | - | chr8.2:49198587-49198606 | MS.gene032382:intron | 30.0% |
| !! | GTTCAATGTTTTTACGTCAA+AGG | + | chr8.2:49198770-49198789 | None:intergenic | 30.0% |
| !! | TATTTGGGCTTTGTTTGTAT+TGG | - | chr8.2:49198586-49198605 | MS.gene032382:intron | 30.0% |
| ACAAAAGGCCATAAATGTAC+TGG | + | chr8.2:49199169-49199188 | None:intergenic | 35.0% | |
| ACTAACCACAATCTACACTT+CGG | + | chr8.2:49197593-49197612 | None:intergenic | 35.0% | |
| ACTATTCGCCAGTACATTTA+TGG | - | chr8.2:49199158-49199177 | MS.gene032382:intron | 35.0% | |
| AGTTTGTCAAATGCGGTATT+TGG | - | chr8.2:49198570-49198589 | MS.gene032382:intron | 35.0% | |
| ATATATGCCCTCTATATTGC+AGG | - | chr8.2:49197703-49197722 | MS.gene032382:CDS | 35.0% | |
| GAATAGTGCTTTCCTCTTAA+AGG | + | chr8.2:49199145-49199164 | None:intergenic | 35.0% | |
| GATCTTGCATATTCATTTGG+AGG | + | chr8.2:49197571-49197590 | None:intergenic | 35.0% | |
| GGTATTACCTGCAATATAGA+GGG | + | chr8.2:49197713-49197732 | None:intergenic | 35.0% | |
| GTAAATCCATACATGAACGA+AGG | - | chr8.2:49198850-49198869 | MS.gene032382:intron | 35.0% | |
| GTTATACAACAATGCATCCA+AGG | - | chr8.2:49197486-49197505 | MS.gene032382:intron | 35.0% | |
| GTTTGTCAAATGCGGTATTT+GGG | - | chr8.2:49198571-49198590 | MS.gene032382:intron | 35.0% | |
| TCGGATCTTGCATATTCATT+TGG | + | chr8.2:49197574-49197593 | None:intergenic | 35.0% | |
| TCTGTTCAAACGAACAGTAA+TGG | + | chr8.2:49198501-49198520 | None:intergenic | 35.0% | |
| TGGTATTACCTGCAATATAG+AGG | + | chr8.2:49197714-49197733 | None:intergenic | 35.0% | |
| TTATACAGCAATGCATCCAA+GGG | - | chr8.2:49199418-49199437 | MS.gene032382:intron | 35.0% | |
| TTGTAACTACGAGACATGAT+GGG | + | chr8.2:49199219-49199238 | None:intergenic | 35.0% | |
| TTGTTTCCTTCGTTCATGTA+TGG | + | chr8.2:49198859-49198878 | None:intergenic | 35.0% | |
| ! | CAAAGTGCTCTTAGAAGTTT+AGG | - | chr8.2:49198979-49198998 | MS.gene032382:intron | 35.0% |
| ! | GTACATTTATGGCCTTTTGT+AGG | - | chr8.2:49199169-49199188 | MS.gene032382:intron | 35.0% |
| ! | TGTGAGTAGTTTGTCAAATG+CGG | - | chr8.2:49198563-49198582 | MS.gene032382:intron | 35.0% |
| !! | GCATCAGTTGATAACTAGAA+CGG | - | chr8.2:49198272-49198291 | MS.gene032382:intron | 35.0% |
| !!! | CATCATAGTGTTTTAGCGTT+TGG | - | chr8.2:49198119-49198138 | MS.gene032382:intron | 35.0% |
| AAGATCCGAAGTGTAGATTG+TGG | - | chr8.2:49197585-49197604 | MS.gene032382:CDS | 40.0% | |
| ACAAACTCGATTCTCAGTCA+AGG | - | chr8.2:49199060-49199079 | MS.gene032382:intron | 40.0% | |
| ACGAAGGAAACAAACATGCT+AGG | - | chr8.2:49198866-49198885 | MS.gene032382:intron | 40.0% | |
| ATAGGAAATGTAATCGCCGA+TGG | - | chr8.2:49198449-49198468 | MS.gene032382:intron | 40.0% | |
| ATTGTGGTTAGTGGTCTATG+TGG | - | chr8.2:49197601-49197620 | MS.gene032382:CDS | 40.0% | |
| CATGTCTCGTAGTTACAAGA+TGG | - | chr8.2:49199221-49199240 | MS.gene032382:intron | 40.0% | |
| CCAATAGGGATTTCTACAAG+AGG | - | chr8.2:49198027-49198046 | MS.gene032382:intron | 40.0% | |
| CCTCTTGTAGAAATCCCTAT+TGG | + | chr8.2:49198030-49198049 | None:intergenic | 40.0% | |
| CGAAGGAAACAAACATGCTA+GGG | - | chr8.2:49198867-49198886 | MS.gene032382:intron | 40.0% | |
| CTTGTAACTACGAGACATGA+TGG | + | chr8.2:49199220-49199239 | None:intergenic | 40.0% | |
| GAAGTGTAGATTGTGGTTAG+TGG | - | chr8.2:49197592-49197611 | MS.gene032382:CDS | 40.0% | |
| GACTAACAACTCCACTCTAA+TGG | + | chr8.2:49197926-49197945 | None:intergenic | 40.0% | |
| GTGTTTGCAGAACAGTTGTA+TGG | - | chr8.2:49198398-49198417 | MS.gene032382:intron | 40.0% | |
| GTTATACAGCAATGCATCCA+AGG | - | chr8.2:49199417-49199436 | MS.gene032382:intron | 40.0% | |
| TAGGAAATGTAATCGCCGAT+GGG | - | chr8.2:49198450-49198469 | MS.gene032382:intron | 40.0% | |
| TAGTTACAAGATGGCCTTCA+TGG | - | chr8.2:49197299-49197318 | MS.gene032382:CDS | 40.0% | |
| TCAAATCACATCGGAATGAG+AGG | + | chr8.2:49197771-49197790 | None:intergenic | 40.0% | |
| TCGACAAACATCGATAATCG+AGG | + | chr8.2:49197869-49197888 | None:intergenic | 40.0% | |
| TCTCATTCCGATGTGATTTG+AGG | - | chr8.2:49197770-49197789 | MS.gene032382:CDS | 40.0% | |
| TGTAACTACGAGACATGATG+GGG | + | chr8.2:49199218-49199237 | None:intergenic | 40.0% | |
| TTGAGACCGTGCAATATAGA+GGG | + | chr8.2:49197671-49197690 | None:intergenic | 40.0% | |
| TTGGGCCTAAACGATTTGAT+CGG | - | chr8.2:49198605-49198624 | MS.gene032382:intron | 40.0% | |
| ! | CATGAGTATGATGGAAAGTG+TGG | - | chr8.2:49199014-49199033 | MS.gene032382:intron | 40.0% |
| ! | GAGTTGTTAGTCACTTTGTC+GGG | - | chr8.2:49197934-49197953 | MS.gene032382:intron | 40.0% |
| ! | GGAGTTGTTAGTCACTTTGT+CGG | - | chr8.2:49197933-49197952 | MS.gene032382:intron | 40.0% |
| ! | GTTTGCTGATGTATTTGGTC+TGG | - | chr8.2:49197638-49197657 | MS.gene032382:CDS | 40.0% |
| ! | TTCTGAAGACAGTGATGACA+TGG | - | chr8.2:49197537-49197556 | MS.gene032382:CDS | 40.0% |
| !! | AATGATGACTTGCTTACCCT+TGG | + | chr8.2:49197506-49197525 | None:intergenic | 40.0% |
| !! | ACTACCGTTGCAGTTTTGTA+CGG | - | chr8.2:49198229-49198248 | MS.gene032382:intron | 40.0% |
| !! | GTGTGGTTTGCTGATGTATT+TGG | - | chr8.2:49197633-49197652 | MS.gene032382:CDS | 40.0% |
| !! | TCAGTTGATAACTAGAACGG+CGG | - | chr8.2:49198275-49198294 | MS.gene032382:intron | 40.0% |
| AACATCGATAATCGAGGACC+AGG | + | chr8.2:49197863-49197882 | None:intergenic | 45.0% | |
| AATCGCCGATGGGAGATTAT+CGG | - | chr8.2:49198460-49198479 | MS.gene032382:intron | 45.0% | |
| ACCACCGTACAAAACTGCAA+CGG | + | chr8.2:49198236-49198255 | None:intergenic | 45.0% | |
| AGATGGTCGTCAATTGGAGA+TGG | - | chr8.2:49199104-49199123 | MS.gene032382:intron | 45.0% | |
| AGGGATTTCTACAAGAGGCA+AGG | - | chr8.2:49198032-49198051 | MS.gene032382:intron | 45.0% | |
| AGTGGTCTATGTGGTTGACA+TGG | - | chr8.2:49197610-49197629 | MS.gene032382:CDS | 45.0% | |
| ATGTTTGTCGATGAACCGTG+CGG | - | chr8.2:49197878-49197897 | MS.gene032382:CDS | 45.0% | |
| ATTCCAACCGCTAGTGAAAG+TGG | - | chr8.2:49197342-49197361 | MS.gene032382:CDS | 45.0% | |
| CTAGTGAAAGTGGAGAATCC+AGG | - | chr8.2:49197352-49197371 | MS.gene032382:CDS | 45.0% | |
| CTCAGCGGTTACGAATTCAT+AGG | - | chr8.2:49198431-49198450 | MS.gene032382:intron | 45.0% | |
| GATGGTCGTCAATTGGAGAT+GGG | - | chr8.2:49199105-49199124 | MS.gene032382:intron | 45.0% | |
| GATTTCTACAAGAGGCAAGG+AGG | - | chr8.2:49198035-49198054 | MS.gene032382:intron | 45.0% | |
| GCTGATGTATTTGGTCTGGA+TGG | - | chr8.2:49197642-49197661 | MS.gene032382:CDS | 45.0% | |
| GCTGGGAGTTTACTCCAATA+GGG | - | chr8.2:49198013-49198032 | MS.gene032382:intron | 45.0% | |
| GGATTCTCCACTTTCACTAG+CGG | + | chr8.2:49197352-49197371 | None:intergenic | 45.0% | |
| GTCGACGATCTTCTTCAAGA+AGG | + | chr8.2:49197833-49197852 | None:intergenic | 45.0% | |
| GTGCATTGTCTCCATTAGAG+TGG | - | chr8.2:49197912-49197931 | MS.gene032382:intron | 45.0% | |
| GTGGAAACCTATGACAGACA+AGG | - | chr8.2:49199033-49199052 | MS.gene032382:intron | 45.0% | |
| GTGGACCGATCAAATCGTTT+AGG | + | chr8.2:49198613-49198632 | None:intergenic | 45.0% | |
| GTGGTCTATGTGGTTGACAT+GGG | - | chr8.2:49197611-49197630 | MS.gene032382:CDS | 45.0% | |
| GTTGAGACCGTGCAATATAG+AGG | + | chr8.2:49197672-49197691 | None:intergenic | 45.0% | |
| TCCTCGTCCTCAAATCACAT+CGG | + | chr8.2:49197780-49197799 | None:intergenic | 45.0% | |
| TCTCCAATTGACGACCATCT+TGG | + | chr8.2:49199104-49199123 | None:intergenic | 45.0% | |
| TGCTGGGAGTTTACTCCAAT+AGG | - | chr8.2:49198012-49198031 | MS.gene032382:intron | 45.0% | |
| TGGTTGCCCTCTATATTGCA+CGG | - | chr8.2:49197662-49197681 | MS.gene032382:CDS | 45.0% | |
| TGTTGCACCTTGTCTGTCAT+AGG | + | chr8.2:49199043-49199062 | None:intergenic | 45.0% | |
| ! | AGATCGTCGACTGTATTTCC+TGG | - | chr8.2:49197842-49197861 | MS.gene032382:CDS | 45.0% |
| !! | AGTTGATAACTAGAACGGCG+GGG | - | chr8.2:49198277-49198296 | MS.gene032382:intron | 45.0% |
| !! | CAGTTGATAACTAGAACGGC+GGG | - | chr8.2:49198276-49198295 | MS.gene032382:intron | 45.0% |
| ACGCCAAGATGGTCGTCAAT+TGG | - | chr8.2:49199098-49199117 | MS.gene032382:intron | 50.0% | |
| ATCGCCGATGGGAGATTATC+GGG | - | chr8.2:49198461-49198480 | MS.gene032382:intron | 50.0% | |
| CCAATAGGTGATTCGTCTGC+CGG | + | chr8.2:49197986-49198005 | None:intergenic | 50.0% | |
| CGGCAGACGAATCACCTATT+GGG | - | chr8.2:49197984-49198003 | MS.gene032382:intron | 50.0% | |
| CTATGTGGTTGACATGGGTG+TGG | - | chr8.2:49197616-49197635 | MS.gene032382:CDS | 50.0% | |
| GCAGACGAATCACCTATTGG+GGG | - | chr8.2:49197986-49198005 | MS.gene032382:intron | 50.0% | |
| GGACTTGACCTACATGTCGT+AGG | + | chr8.2:49197812-49197831 | None:intergenic | 50.0% | |
| GGCAGACGAATCACCTATTG+GGG | - | chr8.2:49197985-49198004 | MS.gene032382:intron | 50.0% | |
| TCCGATGTGATTTGAGGACG+AGG | - | chr8.2:49197776-49197795 | MS.gene032382:CDS | 50.0% | |
| TCTCCACTTTCACTAGCGGT+TGG | + | chr8.2:49197348-49197367 | None:intergenic | 50.0% | |
| TTCTCAGTCAAGGTCGAGCA+TGG | - | chr8.2:49199070-49199089 | MS.gene032382:intron | 50.0% | |
| ! | CTACGAGACATGATGGGGAA+TGG | + | chr8.2:49199213-49199232 | None:intergenic | 50.0% |
| ! | TTAGTCACTTTGTCGGGTCG+AGG | - | chr8.2:49197940-49197959 | MS.gene032382:intron | 50.0% |
| ! | TTGATAACTAGAACGGCGGG+GGG | - | chr8.2:49198279-49198298 | MS.gene032382:intron | 50.0% |
| !! | ACCGTTGCAGTTTTGTACGG+TGG | - | chr8.2:49198232-49198251 | MS.gene032382:intron | 50.0% |
| !! | GTTGATAACTAGAACGGCGG+GGG | - | chr8.2:49198278-49198297 | MS.gene032382:intron | 50.0% |
| CACCTATTGGGGGATCTGCT+GGG | - | chr8.2:49197996-49198015 | MS.gene032382:intron | 55.0% | |
| CCGGCAGACGAATCACCTAT+TGG | - | chr8.2:49197983-49198002 | MS.gene032382:intron | 55.0% | |
| GTGATTTGAGGACGAGGACG+AGG | - | chr8.2:49197782-49197801 | MS.gene032382:CDS | 55.0% | |
| TATGGCACACGTGTGCTCAG+CGG | - | chr8.2:49198416-49198435 | MS.gene032382:intron | 55.0% | |
| TCACCTATTGGGGGATCTGC+TGG | - | chr8.2:49197995-49198014 | MS.gene032382:intron | 55.0% | |
| TCGCCGATGGGAGATTATCG+GGG | - | chr8.2:49198462-49198481 | MS.gene032382:intron | 55.0% | |
| TGATAACTAGAACGGCGGGG+GGG | - | chr8.2:49198280-49198299 | MS.gene032382:intron | 55.0% | |
| TTTGTTCGTCGCGGTAGACG+CGG | - | chr8.2:49198058-49198077 | MS.gene032382:intron | 55.0% | |
| ! | GCAAGGAGGTTTGTTCGTCG+CGG | - | chr8.2:49198049-49198068 | MS.gene032382:intron | 55.0% |
| ACGATCAGTGGCGCCGTATG+TGG | + | chr8.2:49198193-49198212 | None:intergenic | 60.0% | |
| AGGTGATTCGTCTGCCGGAC+CGG | + | chr8.2:49197981-49198000 | None:intergenic | 60.0% | |
| ATAACTAGAACGGCGGGGGG+GGG | - | chr8.2:49198282-49198301 | MS.gene032382:intron | 60.0% | |
| CGATCAGTGGCGCCGTATGT+GGG | + | chr8.2:49198192-49198211 | None:intergenic | 60.0% | |
| CGCCGATGGGAGATTATCGG+GGG | - | chr8.2:49198463-49198482 | MS.gene032382:intron | 60.0% | |
| CTCCCAGCAGATCCCCCAAT+AGG | + | chr8.2:49198001-49198020 | None:intergenic | 60.0% | |
| GAGGCGTGAATTCGCACCGT+TGG | - | chr8.2:49198095-49198114 | MS.gene032382:intron | 60.0% | |
| GATAACTAGAACGGCGGGGG+GGG | - | chr8.2:49198281-49198300 | MS.gene032382:intron | 60.0% | |
| GCACAAGAACCTGCTCCGCA+CGG | + | chr8.2:49197896-49197915 | None:intergenic | 60.0% | |
| GCATGGCTACGACGCCAAGA+TGG | - | chr8.2:49199087-49199106 | MS.gene032382:intron | 60.0% | |
| GCCCCCCGATAATCTCCCAT+CGG | + | chr8.2:49198468-49198487 | None:intergenic | 60.0% | |
| GCCGATGGGAGATTATCGGG+GGG | - | chr8.2:49198464-49198483 | MS.gene032382:intron | 60.0% | |
| GGGTCGAGGAGGACCAAGAA+GGG | - | chr8.2:49197954-49197973 | MS.gene032382:intron | 60.0% | |
| GGTCGAGGAGGACCAAGAAG+GGG | - | chr8.2:49197955-49197974 | MS.gene032382:intron | 60.0% | |
| ! | GTCACTTTGTCGGGTCGAGG+AGG | - | chr8.2:49197943-49197962 | MS.gene032382:intron | 60.0% |
| ! | TTGCTCTGAGCACCCCTTCG+CGG | - | chr8.2:49198527-49198546 | MS.gene032382:intron | 60.0% |
| !! | AGGGGTGCTCAGAGCAAAGG+AGG | + | chr8.2:49198524-49198543 | None:intergenic | 60.0% |
| !! | CGAAGGGGTGCTCAGAGCAA+AGG | + | chr8.2:49198527-49198546 | None:intergenic | 60.0% |
| !! | GAGGAGCGCCTACGACATGT+AGG | - | chr8.2:49197801-49197820 | MS.gene032382:CDS | 60.0% |
| AACACACCCCTTCCCCGCGA+AGG | + | chr8.2:49198544-49198563 | None:intergenic | 65.0% | |
| ACACACCCCTTCCCCGCGAA+GGG | + | chr8.2:49198543-49198562 | None:intergenic | 65.0% | |
| CGGGTCGAGGAGGACCAAGA+AGG | - | chr8.2:49197953-49197972 | MS.gene032382:intron | 65.0% | |
| GAGGAGGACCAAGAAGGGGC+CGG | - | chr8.2:49197959-49197978 | MS.gene032382:intron | 65.0% | |
| GTCGATGAACCGTGCGGAGC+AGG | - | chr8.2:49197884-49197903 | MS.gene032382:CDS | 65.0% | |
| TAACTAGAACGGCGGGGGGG+GGG | - | chr8.2:49198283-49198302 | MS.gene032382:intron | 65.0% | |
| ! | CGCGGTGGACTTTGCGCTAG+AGG | - | chr8.2:49198076-49198095 | MS.gene032382:intron | 65.0% |
| ! | TGCTCTGAGCACCCCTTCGC+GGG | - | chr8.2:49198528-49198547 | MS.gene032382:intron | 65.0% |
| AACTAGAACGGCGGGGGGGG+GGG | - | chr8.2:49198284-49198303 | MS.gene032382:intron | 70.0% | |
| AGCACCCCTTCGCGGGGAAG+GGG | - | chr8.2:49198535-49198554 | MS.gene032382:intron | 70.0% | |
| CACACCCCTTCCCCGCGAAG+GGG | + | chr8.2:49198542-49198561 | None:intergenic | 70.0% | |
| GAGCACCCCTTCGCGGGGAA+GGG | - | chr8.2:49198534-49198553 | MS.gene032382:intron | 70.0% | |
| GGACCAAGAAGGGGCCGGTC+CGG | - | chr8.2:49197964-49197983 | MS.gene032382:intron | 70.0% | |
| GTTCGTCGCGGTAGACGCGG+TGG | - | chr8.2:49198061-49198080 | MS.gene032382:intron | 70.0% | |
| TGAGCACCCCTTCGCGGGGA+AGG | - | chr8.2:49198533-49198552 | MS.gene032382:intron | 70.0% | |
| ! | GCTCTGAGCACCCCTTCGCG+GGG | - | chr8.2:49198529-49198548 | MS.gene032382:intron | 70.0% |
| ACTAGAACGGCGGGGGGGGG+GGG | - | chr8.2:49198285-49198304 | MS.gene032382:intron | 75.0% | |
| CTGCCGGACCGGCCCCTTCT+TGG | + | chr8.2:49197970-49197989 | None:intergenic | 75.0% | |
| ! | CTAGAACGGCGGGGGGGGGG+GGG | - | chr8.2:49198286-49198305 | MS.gene032382:intron | 80.0% |
| ! | TAGAACGGCGGGGGGGGGGG+GGG | - | chr8.2:49198287-49198306 | MS.gene032382:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 49197291 | 49199531 | 49197291 | ID=MS.gene032382 |
| chr8.2 | mRNA | 49197291 | 49199531 | 49197291 | ID=MS.gene032382.t1;Parent=MS.gene032382 |
| chr8.2 | exon | 49199449 | 49199531 | 49199449 | ID=MS.gene032382.t1.exon1;Parent=MS.gene032382.t1 |
| chr8.2 | CDS | 49199449 | 49199531 | 49199449 | ID=cds.MS.gene032382.t1;Parent=MS.gene032382.t1 |
| chr8.2 | exon | 49197518 | 49197904 | 49197518 | ID=MS.gene032382.t1.exon2;Parent=MS.gene032382.t1 |
| chr8.2 | CDS | 49197518 | 49197904 | 49197518 | ID=cds.MS.gene032382.t1;Parent=MS.gene032382.t1 |
| chr8.2 | exon | 49197291 | 49197396 | 49197291 | ID=MS.gene032382.t1.exon3;Parent=MS.gene032382.t1 |
| chr8.2 | CDS | 49197291 | 49197396 | 49197291 | ID=cds.MS.gene032382.t1;Parent=MS.gene032382.t1 |
| Gene Sequence |
| Protein sequence |
