AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032451

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032451.t1 MTR_8g051580 93.370 181 12 0 1 181 1 181 1.20e-122 343
MS.gene032451.t1 MTR_1g047550 58.857 175 72 0 1 175 1 175 6.58e-71 213
MS.gene032451.t1 MTR_1g063160 55.429 175 78 0 1 175 1 175 3.52e-67 203
MS.gene032451.t1 MTR_8g046350 62.130 169 58 2 1 169 1 163 8.96e-67 201
MS.gene032451.t1 MTR_1g054265 57.738 168 71 0 1 168 1 168 2.13e-65 198
MS.gene032451.t1 MTR_8g079502 57.229 166 71 0 1 166 1 166 3.84e-64 195
MS.gene032451.t1 MTR_4g131030 52.406 187 72 1 1 170 1 187 2.27e-63 194
MS.gene032451.t1 MTR_4g094632 39.881 168 81 5 1 164 1 152 1.39e-28 104
MS.gene032451.t1 MTR_3g080940 43.089 123 60 2 1 117 8 126 2.21e-23 92.4
MS.gene032451.t1 MTR_1g106070 45.545 101 53 1 2 100 9 109 5.39e-23 90.5
MS.gene032451.t1 MTR_2g105290 43.269 104 57 1 1 104 11 112 6.92e-23 90.1
MS.gene032451.t1 MTR_3g052870 37.931 145 72 3 2 142 9 139 1.38e-22 90.5
MS.gene032451.t1 MTR_8g086290 40.777 103 59 1 2 104 12 112 2.47e-22 89.0
MS.gene032451.t1 MTR_5g045560 42.991 107 59 1 1 107 8 112 6.93e-22 89.0
MS.gene032451.t1 MTR_4g094638 42.056 107 59 1 1 104 1 107 8.08e-22 87.4
MS.gene032451.t1 MTR_1g105920 45.545 101 53 1 2 100 9 109 1.64e-21 88.2
MS.gene032451.t1 MTR_3g052920 56.522 69 30 0 2 70 9 77 2.04e-21 87.8
MS.gene032451.t1 MTR_1g108580 36.943 157 81 3 2 143 9 162 2.63e-21 87.4
MS.gene032451.t1 MTR_1g105910 39.759 166 67 7 2 166 9 142 1.93e-20 85.1
MS.gene032451.t1 MTR_2g030740 56.522 69 30 0 2 70 9 77 2.64e-20 84.7
MS.gene032451.t1 MTR_8g043650 55.072 69 31 0 2 70 9 77 4.23e-20 84.3
MS.gene032451.t1 MTR_5g053390 35.256 156 85 3 2 143 9 162 4.65e-20 84.3
MS.gene032451.t1 MTR_3g030770 55.072 69 31 0 2 70 9 77 4.73e-20 84.0
MS.gene032451.t1 MTR_1g108510 55.072 69 31 0 2 70 9 77 5.36e-20 84.0
MS.gene032451.t1 MTR_0121s0100 41.176 119 65 2 2 120 9 122 9.47e-20 80.9
MS.gene032451.t1 MTR_1g012570 53.623 69 32 0 2 70 9 77 1.17e-19 83.2
MS.gene032451.t1 MTR_7g028448 37.600 125 76 2 17 140 27 150 1.18e-19 81.6
MS.gene032451.t1 MTR_4g036915 37.600 125 76 2 17 140 27 150 1.18e-19 81.6
MS.gene032451.t1 MTR_2g093190 36.943 157 81 3 2 143 9 162 1.41e-19 82.8
MS.gene032451.t1 MTR_1g077360 49.367 79 40 0 2 80 9 87 1.72e-19 82.8
MS.gene032451.t1 MTR_5g055100 44.898 98 41 1 2 99 9 93 2.64e-19 82.4
MS.gene032451.t1 MTR_1g075600 55.072 69 31 0 2 70 9 77 4.40e-19 81.6
MS.gene032451.t1 MTR_2g085280 49.367 79 40 0 2 80 9 87 1.17e-18 80.5
MS.gene032451.t1 MTR_2g085250 49.367 79 40 0 2 80 9 87 1.20e-18 80.5
MS.gene032451.t1 MTR_3g030780 49.275 69 35 0 2 70 9 77 1.79e-18 77.4
MS.gene032451.t1 MTR_0121s0080 52.113 71 34 0 2 72 9 79 4.27e-18 79.0
MS.gene032451.t1 MTR_2g017865 35.115 131 81 2 1 130 16 143 7.19e-18 79.0
MS.gene032451.t1 MTR_2g009890 52.174 69 33 0 1 69 1 69 2.29e-17 77.8
MS.gene032451.t1 MTR_1g053070 45.570 79 43 0 1 79 1 79 2.60e-17 77.0
MS.gene032451.t1 MTR_1g105905 41.818 110 59 2 18 125 8 114 2.94e-17 76.6
MS.gene032451.t1 MTR_5g066180 46.377 69 37 0 1 69 1 69 3.16e-17 76.6
MS.gene032451.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 5.86e-17 75.9
MS.gene032451.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 6.41e-17 75.5
MS.gene032451.t1 MTR_7g062350 56.667 60 26 0 13 72 32 91 6.62e-17 75.9
MS.gene032451.t1 MTR_4g127140 48.101 79 41 0 1 79 11 89 9.11e-17 74.3
MS.gene032451.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 9.87e-17 75.9
MS.gene032451.t1 MTR_4g084740 34.225 187 105 8 1 175 1 181 1.06e-16 76.6
MS.gene032451.t1 MTR_1g101970 42.667 75 43 0 1 75 1 75 1.44e-16 73.9
MS.gene032451.t1 MTR_3g113030 37.778 135 77 3 1 134 1 129 1.79e-16 74.7
MS.gene032451.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 2.19e-16 70.1
MS.gene032451.t1 MTR_8g087860 35.714 112 69 1 1 112 17 125 3.21e-16 73.9
MS.gene032451.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 4.29e-16 73.6
MS.gene032451.t1 MTR_5g046790 46.479 71 35 1 1 71 1 68 4.41e-16 73.2
MS.gene032451.t1 MTR_7g075870 46.377 69 37 0 1 69 1 69 4.62e-16 73.2
MS.gene032451.t1 MTR_3g452380 49.275 69 35 0 1 69 16 84 5.96e-16 73.6
MS.gene032451.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 6.42e-16 73.2
MS.gene032451.t1 MTR_8g033270 44.000 75 42 0 1 75 1 75 6.96e-16 73.2
MS.gene032451.t1 MTR_4g093970 37.857 140 71 3 1 132 27 158 8.04e-16 72.8
MS.gene032451.t1 MTR_3g067875 60.417 48 19 0 18 65 8 55 1.36e-15 68.2
MS.gene032451.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 1.82e-15 71.6
MS.gene032451.t1 MTR_8g066260 46.479 71 35 1 1 71 1 68 2.91e-15 71.6
MS.gene032451.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 3.08e-15 67.0
MS.gene032451.t1 MTR_1g108500 55.000 60 27 0 18 77 113 172 3.52e-15 72.4
MS.gene032451.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 3.99e-15 70.5
MS.gene032451.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 4.08e-15 70.9
MS.gene032451.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 4.26e-15 70.9
MS.gene032451.t1 MTR_4g109830 46.479 71 35 1 1 71 1 68 5.35e-15 70.5
MS.gene032451.t1 MTR_7g016600 50.820 61 30 0 1 61 1 61 6.11e-15 70.9
MS.gene032451.t1 MTR_7g075870 47.143 70 36 1 1 69 1 70 6.27e-15 70.1
MS.gene032451.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 6.35e-15 67.8
MS.gene032451.t1 MTR_8g097090 35.119 168 92 6 1 157 1 162 1.05e-14 70.1
MS.gene032451.t1 MTR_3g084980 52.459 61 29 0 1 61 1 61 1.50e-14 69.7
MS.gene032451.t1 MTR_6g464720 31.655 139 85 4 1 134 1 134 1.73e-14 69.7
MS.gene032451.t1 MTR_5g032520 44.615 65 36 0 1 65 1 65 1.87e-14 68.9
MS.gene032451.t1 MTR_7g016630 41.429 70 40 1 1 69 1 70 1.94e-14 69.3
MS.gene032451.t1 MTR_5g032150 44.615 65 36 0 1 65 1 65 2.48e-14 68.9
MS.gene032451.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 3.21e-14 67.8
MS.gene032451.t1 MTR_6g015975 31.609 174 102 5 1 164 1 167 3.22e-14 68.9
MS.gene032451.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 3.27e-14 68.2
MS.gene032451.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 3.77e-14 67.4
MS.gene032451.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 3.79e-14 67.4
MS.gene032451.t1 MTR_1g038300 43.662 71 38 1 1 69 1 71 4.02e-14 68.2
MS.gene032451.t1 MTR_4g109810 46.774 62 33 0 1 62 1 62 6.60e-14 67.8
MS.gene032451.t1 MTR_4g093030 50.794 63 31 0 1 63 1 63 7.28e-14 66.2
MS.gene032451.t1 MTR_7g075850 50.820 61 30 0 1 61 1 61 1.25e-13 67.0
MS.gene032451.t1 MTR_3g102570 35.526 152 77 9 1 151 1 132 2.98e-13 66.6
MS.gene032451.t1 MTR_3g067910 49.057 53 27 0 18 70 6 58 3.46e-13 63.2
MS.gene032451.t1 MTR_1g029670 41.935 62 36 0 1 62 1 62 1.22e-12 63.5
MS.gene032451.t1 MTR_3g088615 41.935 62 36 0 1 62 1 62 1.33e-12 63.2
MS.gene032451.t1 MTR_1g041615 66.667 42 14 0 17 58 21 62 1.43e-12 62.0
MS.gene032451.t1 MTR_3g067870 56.250 48 21 0 18 65 92 139 1.92e-12 62.4
MS.gene032451.t1 MTR_5g041650 29.762 168 87 4 1 140 38 202 2.74e-12 64.3
MS.gene032451.t1 MTR_3g437790 34.459 148 58 5 19 140 30 164 3.06e-12 62.4
MS.gene032451.t1 MTR_4g108720 28.743 167 88 4 1 139 1 164 3.27e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032451.t1 AT2G34440 42.197 173 88 4 1 162 1 172 1.04e-32 115
MS.gene032451.t1 AT3G66656 40.341 176 88 4 1 160 1 175 7.62e-30 108
MS.gene032451.t1 AT2G24840 37.805 164 87 4 1 150 62 224 1.59e-29 109
MS.gene032451.t1 AT5G60440 43.558 163 65 6 2 143 7 163 9.93e-27 103
MS.gene032451.t1 AT1G01530 46.903 113 57 3 1 112 6 116 6.52e-23 92.0
MS.gene032451.t1 AT1G47760 55.882 68 30 0 1 68 1 68 1.57e-21 87.0
MS.gene032451.t1 AT3G57230 47.674 86 38 1 1 86 1 79 6.92e-20 81.6
MS.gene032451.t1 AT1G65360 55.072 69 31 0 1 69 6 74 7.18e-20 83.6
MS.gene032451.t1 AT3G57230 47.674 86 38 1 1 86 1 79 1.30e-19 83.2
MS.gene032451.t1 AT3G57230 47.674 86 38 1 1 86 1 79 1.30e-19 83.2
MS.gene032451.t1 AT4G36590 55.882 68 30 0 2 69 7 74 4.39e-19 82.0
MS.gene032451.t1 AT2G22630 53.623 69 32 0 1 69 1 69 1.40e-18 80.1
MS.gene032451.t1 AT2G22630 53.623 69 32 0 1 69 1 69 1.40e-18 80.1
MS.gene032451.t1 AT4G37940 53.623 69 32 0 1 69 1 69 1.95e-18 79.7
MS.gene032451.t1 AT3G61120 44.872 78 43 0 1 78 1 78 2.64e-18 79.7
MS.gene032451.t1 AT4G37940 53.623 69 32 0 1 69 1 69 2.84e-18 79.0
MS.gene032451.t1 AT4G37940 53.623 69 32 0 1 69 1 69 4.92e-18 77.4
MS.gene032451.t1 AT3G04100 36.691 139 65 3 2 135 14 134 1.79e-17 77.0
MS.gene032451.t1 AT1G29962 47.222 72 38 0 2 73 8 79 5.77e-17 75.1
MS.gene032451.t1 AT1G71692 42.553 94 50 2 1 93 1 91 6.32e-17 75.5
MS.gene032451.t1 AT2G45660 33.036 112 72 1 1 112 1 109 7.28e-17 73.9
MS.gene032451.t1 AT2G03710 35.088 171 89 6 1 158 1 162 1.04e-16 74.3
MS.gene032451.t1 AT5G13790 40.741 108 53 2 1 106 1 99 1.17e-16 75.9
MS.gene032451.t1 AT1G28460 45.833 72 39 0 2 73 8 79 2.08e-16 73.6
MS.gene032451.t1 AT5G15800 34.320 169 93 4 1 158 1 162 2.13e-16 74.7
MS.gene032451.t1 AT5G13790 40.367 109 55 3 1 106 1 102 2.24e-16 75.1
MS.gene032451.t1 AT3G57390 47.826 69 36 0 1 69 1 69 2.38e-16 74.3
MS.gene032451.t1 AT5G15800 34.320 169 93 4 1 158 1 162 2.41e-16 74.7
MS.gene032451.t1 AT4G24540 35.088 114 70 1 1 110 1 114 2.46e-16 73.9
MS.gene032451.t1 AT4G22950 53.226 62 29 0 1 62 1 62 3.20e-16 72.8
MS.gene032451.t1 AT2G45650 46.377 69 37 0 1 69 1 69 3.72e-16 74.3
MS.gene032451.t1 AT2G22540 49.231 65 33 0 1 65 1 65 4.38e-16 73.9
MS.gene032451.t1 AT2G22540 49.231 65 33 0 1 65 1 65 4.38e-16 73.9
MS.gene032451.t1 AT3G57390 47.826 69 36 0 1 69 1 69 4.43e-16 73.9
MS.gene032451.t1 AT2G45660 45.714 70 38 0 1 70 1 70 4.51e-16 73.2
MS.gene032451.t1 AT4G09960 33.929 112 71 1 1 112 1 109 4.66e-16 73.2
MS.gene032451.t1 AT4G09960 33.929 112 71 1 1 112 2 110 4.91e-16 73.6
MS.gene032451.t1 AT4G09960 33.929 112 71 1 1 112 1 109 5.53e-16 73.2
MS.gene032451.t1 AT4G09960 33.929 112 71 1 1 112 11 119 5.96e-16 73.6
MS.gene032451.t1 AT3G58780 31.169 154 101 2 1 154 22 170 6.06e-16 73.6
MS.gene032451.t1 AT3G58780 31.169 154 101 2 1 154 16 164 6.07e-16 73.6
MS.gene032451.t1 AT4G09960 33.929 112 71 1 1 112 27 135 7.78e-16 73.2
MS.gene032451.t1 AT2G03710 35.088 171 89 6 1 158 1 162 8.04e-16 73.2
MS.gene032451.t1 AT1G69120 49.296 71 33 1 1 71 1 68 8.08e-16 72.8
MS.gene032451.t1 AT2G03710 35.088 171 89 6 1 158 1 162 8.93e-16 73.2
MS.gene032451.t1 AT2G14210 54.098 61 28 0 1 61 1 61 1.06e-15 72.8
MS.gene032451.t1 AT1G26310 30.667 150 102 1 1 150 1 148 1.11e-15 72.8
MS.gene032451.t1 AT1G69120 49.296 71 33 1 1 71 1 68 1.22e-15 72.8
MS.gene032451.t1 AT1G24260 35.503 169 92 5 1 157 1 164 1.24e-15 72.8
MS.gene032451.t1 AT3G58780 34.821 112 70 1 1 112 16 124 1.29e-15 73.2
MS.gene032451.t1 AT3G02310 34.857 175 96 5 1 164 1 168 1.32e-15 71.6
MS.gene032451.t1 AT2G14210 54.098 61 28 0 1 61 1 61 1.32e-15 72.4
MS.gene032451.t1 AT3G30260 52.459 61 29 0 1 61 1 61 1.44e-15 72.4
MS.gene032451.t1 AT5G60910 46.479 71 35 1 1 71 1 68 2.02e-15 72.0
MS.gene032451.t1 AT1G22130 50.704 71 34 1 1 70 1 71 2.30e-15 72.8
MS.gene032451.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.67e-15 71.2
MS.gene032451.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.67e-15 71.2
MS.gene032451.t1 AT4G09960 33.929 112 71 1 1 112 96 204 3.02e-15 72.4
MS.gene032451.t1 AT4G18960 34.615 130 81 2 2 130 18 144 3.03e-15 71.6
MS.gene032451.t1 AT5G65070 35.115 131 79 3 1 127 1 129 3.51e-15 69.3
MS.gene032451.t1 AT1G72350 52.174 69 31 1 2 70 43 109 3.78e-15 70.9
MS.gene032451.t1 AT2G42830 46.377 69 37 0 1 69 16 84 4.29e-15 71.2
MS.gene032451.t1 AT2G42830 46.377 69 37 0 1 69 16 84 4.31e-15 71.2
MS.gene032451.t1 AT3G02310 34.857 175 96 6 1 164 1 168 4.87e-15 71.2
MS.gene032451.t1 AT1G24260 35.882 170 89 7 1 157 1 163 5.13e-15 70.9
MS.gene032451.t1 AT3G54340 50.000 62 31 0 1 62 1 62 5.72e-15 70.5
MS.gene032451.t1 AT4G11880 35.897 117 50 2 1 116 1 93 6.30e-15 69.3
MS.gene032451.t1 AT4G11880 35.897 117 50 2 1 116 1 93 6.30e-15 69.3
MS.gene032451.t1 AT1G77980 48.101 79 36 2 1 78 1 75 6.66e-15 71.6
MS.gene032451.t1 AT5G65070 35.115 131 79 3 1 127 1 129 8.90e-15 69.7
MS.gene032451.t1 AT5G51860 43.662 71 40 0 1 71 1 71 9.90e-15 69.3
MS.gene032451.t1 AT5G65070 43.590 78 41 2 1 76 1 77 1.10e-14 69.7
MS.gene032451.t1 AT1G46408 50.633 79 33 3 1 73 1 79 1.16e-14 70.1
MS.gene032451.t1 AT5G51860 43.662 71 40 0 1 71 1 71 1.18e-14 69.3
MS.gene032451.t1 AT4G11880 35.897 117 50 2 1 116 1 93 1.26e-14 69.3
MS.gene032451.t1 AT4G11880 35.897 117 50 2 1 116 1 93 1.26e-14 69.3
MS.gene032451.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.68e-14 68.2
MS.gene032451.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.89e-14 68.2
MS.gene032451.t1 AT5G10140 52.632 57 27 0 1 57 1 57 2.42e-14 68.2
MS.gene032451.t1 AT5G51870 42.029 69 40 0 1 69 1 69 2.67e-14 68.6
MS.gene032451.t1 AT1G24260 41.935 93 49 1 1 93 1 88 2.87e-14 68.9
MS.gene032451.t1 AT2G22540 50.877 57 28 0 1 57 1 57 3.16e-14 68.6
MS.gene032451.t1 AT3G58780 39.535 86 39 1 1 73 16 101 3.98e-14 68.6
MS.gene032451.t1 AT5G51870 42.029 69 40 0 1 69 1 69 5.19e-14 67.8
MS.gene032451.t1 AT5G51870 42.029 69 40 0 1 69 1 69 5.72e-14 66.6
MS.gene032451.t1 AT5G65070 42.857 70 39 1 1 69 1 70 5.83e-14 67.8
MS.gene032451.t1 AT5G51870 42.029 69 40 0 1 69 11 79 6.35e-14 67.8
MS.gene032451.t1 AT5G10140 51.724 58 28 0 1 58 1 58 6.44e-14 67.0
MS.gene032451.t1 AT5G51870 42.029 69 40 0 1 69 24 92 9.73e-14 66.6
MS.gene032451.t1 AT3G58780 50.820 61 30 0 1 61 16 76 9.93e-14 67.8
MS.gene032451.t1 AT5G20240 47.619 63 33 0 1 63 1 63 1.14e-13 65.5
MS.gene032451.t1 AT5G65050 52.727 55 26 0 1 55 1 55 1.35e-13 65.9
MS.gene032451.t1 AT1G18750 28.977 176 84 4 1 138 1 173 1.39e-13 68.2
MS.gene032451.t1 AT5G65070 48.276 58 30 0 1 58 1 58 1.39e-13 66.6
MS.gene032451.t1 AT1G18750 28.977 176 84 4 1 138 1 173 1.42e-13 68.2
MS.gene032451.t1 AT5G20240 47.619 63 33 0 1 63 1 63 1.61e-13 66.2
MS.gene032451.t1 AT5G23260 34.731 167 91 7 1 157 1 159 2.64e-13 66.2
MS.gene032451.t1 AT5G65060 54.545 55 25 0 1 55 1 55 2.70e-13 65.5
MS.gene032451.t1 AT5G23260 56.140 57 25 0 1 57 17 73 2.72e-13 66.6
MS.gene032451.t1 AT5G65060 54.545 55 25 0 1 55 1 55 2.93e-13 65.5
MS.gene032451.t1 AT5G23260 56.140 57 25 0 1 57 17 73 2.95e-13 66.2
MS.gene032451.t1 AT5G65060 54.545 55 25 0 1 55 1 55 3.00e-13 65.1
MS.gene032451.t1 AT5G23260 36.129 155 85 6 1 149 1 147 3.12e-13 65.9
MS.gene032451.t1 AT4G37435 28.249 177 94 4 1 150 1 171 4.38e-13 64.7
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.81e-13 63.9
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.81e-13 63.9
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 4.81e-13 63.9
MS.gene032451.t1 AT5G49490 41.176 102 45 2 3 100 46 136 5.07e-13 65.9
MS.gene032451.t1 AT5G65050 52.727 55 26 0 1 55 1 55 6.27e-13 64.3
MS.gene032451.t1 AT1G28450 41.667 72 42 0 2 73 8 79 7.30e-13 63.9
MS.gene032451.t1 AT5G65050 52.727 55 26 0 1 55 1 55 7.93e-13 63.9
MS.gene032451.t1 AT5G65050 52.727 55 26 0 1 55 1 55 8.62e-13 63.9
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.04e-12 63.2
MS.gene032451.t1 AT5G62165 30.693 101 59 1 1 90 1 101 1.12e-12 61.6
MS.gene032451.t1 AT1G77950 40.845 71 41 1 1 70 1 71 1.51e-12 64.3
MS.gene032451.t1 AT1G77950 40.845 71 41 1 1 70 1 71 1.51e-12 64.3
MS.gene032451.t1 AT1G77950 40.845 71 41 1 1 70 1 71 1.51e-12 64.3
MS.gene032451.t1 AT1G77950 40.845 71 41 1 1 70 1 71 1.51e-12 64.3
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.60e-12 63.5
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.60e-12 63.5
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.60e-12 63.5
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.77e-12 63.2
MS.gene032451.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.77e-12 63.2
MS.gene032451.t1 AT1G18750 42.466 73 40 1 1 71 1 73 3.00e-12 64.3
MS.gene032451.t1 AT5G65080 42.857 70 39 1 1 69 8 77 3.04e-12 62.4
MS.gene032451.t1 AT1G17310 55.556 54 22 1 17 70 63 114 8.24e-12 61.6
MS.gene032451.t1 AT1G17310 55.556 54 22 1 17 70 74 125 9.88e-12 61.6
MS.gene032451.t1 AT5G49420 46.753 77 33 3 3 73 8 82 1.41e-11 62.4
MS.gene032451.t1 AT1G31140 30.476 105 68 2 1 100 1 105 2.25e-11 60.5
MS.gene032451.t1 AT5G38620 47.368 76 32 3 3 72 6 79 2.43e-11 61.6
MS.gene032451.t1 AT2G26320 45.902 61 33 0 1 61 17 77 4.68e-11 57.4

Find 42 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8.3:-51112744 None:intergenic
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 8.3:-51112895 None:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 8.3:-51112806 None:intergenic
GGGAATAAGCCTTACTCATT+CGG 0.356415 8.3:+51112695 MS.gene032451:CDS
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8.3:+51112674 MS.gene032451:CDS
AGGATTTGAAAGATTCATAT+CGG 0.405934 8.3:+51112933 MS.gene032451:CDS
GGAATAAGCCTTACTCATTC+GGG 0.418546 8.3:+51112696 MS.gene032451:CDS
ATGAACTTGCCATCTTGTGC+TGG 0.421859 8.3:+51112642 MS.gene032451:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8.3:+51112602 MS.gene032451:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8.3:+51112675 MS.gene032451:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8.3:+51113012 MS.gene032451:CDS
ATATCGGAAATTGAAGGAAA+TGG 0.440694 8.3:+51112949 MS.gene032451:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8.3:+51112737 MS.gene032451:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 8.3:-51112584 None:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 8.3:+51113049 MS.gene032451:CDS
CTTGGGTGCCCGAATGAGTA+AGG 0.483546 8.3:-51112704 None:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 8.3:-51112911 None:intergenic
AATGAGTAAGGCTTATTCCC+AGG 0.515959 8.3:-51112692 None:intergenic
AGCTTCCTATGCCATCATCT+AGG 0.527794 8.3:-51112769 None:intergenic
AACTGAACTCACTCAACTTG+AGG 0.538837 8.3:+51112913 MS.gene032451:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8.3:-51112583 None:intergenic
GTCGCAAAATTGCGATTGTG+AGG 0.548876 8.3:+51112552 MS.gene032451:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8.3:-51112722 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.562652 8.3:+51112573 MS.gene032451:CDS
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8.3:+51113019 MS.gene032451:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8.3:+51112758 MS.gene032451:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8.3:+51112577 MS.gene032451:CDS
TGAACTTGCCATCTTGTGCT+GGG 0.579118 8.3:+51112643 MS.gene032451:CDS
ATGAGTAAGGCTTATTCCCA+GGG 0.586047 8.3:-51112691 None:intergenic
AATTTCTGCCCAGCACAAGA+TGG 0.593688 8.3:-51112651 None:intergenic
GGAGGCTGAAAATGAAGCAA+GGG 0.606305 8.3:+51112859 MS.gene032451:CDS
AGATGTGCTAGCTCAACTAA+AGG 0.611567 8.3:+51112838 MS.gene032451:CDS
AGGAGGCTGAAAATGAAGCA+AGG 0.618287 8.3:+51112858 MS.gene032451:CDS
AGATTCATATCGGAAATTGA+AGG 0.637344 8.3:+51112943 MS.gene032451:CDS
TCGCAAAATTGCGATTGTGA+GGG 0.641127 8.3:+51112553 MS.gene032451:CDS
TGTGCTAGCTCAACTAAAGG+AGG 0.641632 8.3:+51112841 MS.gene032451:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8.3:+51112616 MS.gene032451:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8.3:+51112764 MS.gene032451:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8.3:-51112721 None:intergenic
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 8.3:+51112796 MS.gene032451:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8.3:+51113015 MS.gene032451:CDS
TGAGTAAGGCTTATTCCCAG+GGG 0.760036 8.3:-51112690 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGATTTGAAAGATTCATAT+CGG + chr8.3:51112933-51112952 MS.gene032451:CDS 25.0%
AGATTCATATCGGAAATTGA+AGG + chr8.3:51112943-51112962 MS.gene032451:CDS 30.0%
ATATCGGAAATTGAAGGAAA+TGG + chr8.3:51112949-51112968 MS.gene032451:CDS 30.0%
AACAAAGTCGCAAGAAAGAA+AGG + chr8.3:51113049-51113068 MS.gene032451:CDS 35.0%
AATGTAACCTGCCTTATGAT+AGG - chr8.3:51112587-51112606 None:intergenic 35.0%
ATGCAACATCATCAACACTT+GGG - chr8.3:51112724-51112743 None:intergenic 35.0%
ATGTAACCTGCCTTATGATA+GGG - chr8.3:51112586-51112605 None:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + chr8.3:51112737-51112756 MS.gene032451:CDS 35.0%
TCGAACAGGATTATTCAAGA+AGG + chr8.3:51112616-51112635 MS.gene032451:CDS 35.0%
!! CAGTTGGTTTGTATTCTTCT+AGG - chr8.3:51112898-51112917 None:intergenic 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - chr8.3:51113034-51113053 None:intergenic 35.0%
AACTGAACTCACTCAACTTG+AGG + chr8.3:51112913-51112932 MS.gene032451:CDS 40.0%
AATGAGTAAGGCTTATTCCC+AGG - chr8.3:51112695-51112714 None:intergenic 40.0%
AGATGTGCTAGCTCAACTAA+AGG + chr8.3:51112838-51112857 MS.gene032451:CDS 40.0%
ATGAGTAAGGCTTATTCCCA+GGG - chr8.3:51112694-51112713 None:intergenic 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - chr8.3:51112747-51112766 None:intergenic 40.0%
GATGCAACATCATCAACACT+TGG - chr8.3:51112725-51112744 None:intergenic 40.0%
GGAATAAGCCTTACTCATTC+GGG + chr8.3:51112696-51112715 MS.gene032451:CDS 40.0%
GGGAATAAGCCTTACTCATT+CGG + chr8.3:51112695-51112714 MS.gene032451:CDS 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + chr8.3:51113012-51113031 MS.gene032451:CDS 40.0%
TCGCAAAATTGCGATTGTGA+GGG + chr8.3:51112553-51112572 MS.gene032451:CDS 40.0%
TGATTCAGATCCTCTCTGTT+TGG - chr8.3:51112809-51112828 None:intergenic 40.0%
!! TCAAGTTGAGTGAGTTCAGT+TGG - chr8.3:51112914-51112933 None:intergenic 40.0%
!! TTCTGAAGTTCCAAACAGAG+AGG + chr8.3:51112796-51112815 MS.gene032451:CDS 40.0%
AATTTCTGCCCAGCACAAGA+TGG - chr8.3:51112654-51112673 None:intergenic 45.0%
AGCTTCCTATGCCATCATCT+AGG - chr8.3:51112772-51112791 None:intergenic 45.0%
AGGAGGCTGAAAATGAAGCA+AGG + chr8.3:51112858-51112877 MS.gene032451:CDS 45.0%
ATGAACTTGCCATCTTGTGC+TGG + chr8.3:51112642-51112661 MS.gene032451:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + chr8.3:51112675-51112694 MS.gene032451:CDS 45.0%
GGAGGCTGAAAATGAAGCAA+GGG + chr8.3:51112859-51112878 MS.gene032451:CDS 45.0%
GTCGCAAAATTGCGATTGTG+AGG + chr8.3:51112552-51112571 MS.gene032451:CDS 45.0%
TGAACTTGCCATCTTGTGCT+GGG + chr8.3:51112643-51112662 MS.gene032451:CDS 45.0%
TGAGTAAGGCTTATTCCCAG+GGG - chr8.3:51112693-51112712 None:intergenic 45.0%
TGTGCTAGCTCAACTAAAGG+AGG + chr8.3:51112841-51112860 MS.gene032451:CDS 45.0%
! CTCAACCTAGATGATGGCAT+AGG + chr8.3:51112764-51112783 MS.gene032451:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + chr8.3:51112602-51112621 MS.gene032451:CDS 45.0%
ACTTCTTGCAGAGAAACCGG+TGG + chr8.3:51113015-51113034 MS.gene032451:CDS 50.0%
GAGAGACCCTATCATAAGGC+AGG + chr8.3:51112577-51112596 MS.gene032451:CDS 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + chr8.3:51112674-51112693 MS.gene032451:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + chr8.3:51112758-51112777 MS.gene032451:CDS 50.0%
GGGTGAGAGACCCTATCATA+AGG + chr8.3:51112573-51112592 MS.gene032451:CDS 50.0%
CTTGCAGAGAAACCGGTGGT+TGG + chr8.3:51113019-51113038 MS.gene032451:CDS 55.0%
CTTGGGTGCCCGAATGAGTA+AGG - chr8.3:51112707-51112726 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 51112545 51113090 51112545 ID=MS.gene032451
chr8.3 mRNA 51112545 51113090 51112545 ID=MS.gene032451.t1;Parent=MS.gene032451
chr8.3 exon 51112545 51113090 51112545 ID=MS.gene032451.t1.exon1;Parent=MS.gene032451.t1
chr8.3 CDS 51112545 51113090 51112545 ID=cds.MS.gene032451.t1;Parent=MS.gene032451.t1
Gene Sequence

>MS.gene032451

ATGGGTCGTCGCAAAATTGCGATTGTGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCTGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCATTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAAGCAAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MS.gene032451.t1

MGRRKIAIVRVRDPIIRQVTFSKRRTGLFKKANELAILCWAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML