AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032489

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032489.t1 MTR_4g019670 81.453 523 89 2 1 519 1 519 0.0 806
MS.gene032489.t1 MTR_7g106510 80.916 524 74 6 1 519 1 503 0.0 793
MS.gene032489.t1 MTR_3g093900 44.521 584 245 9 1 519 1 570 1.04e-132 397
MS.gene032489.t1 MTR_8g467500 52.593 270 124 1 13 282 13 278 2.67e-72 232
MS.gene032489.t1 MTR_5g075380 33.333 156 104 0 7 162 4 159 5.08e-24 99.0
MS.gene032489.t1 MTR_3g466980 33.333 165 106 2 1 164 1 162 3.48e-23 98.2
MS.gene032489.t1 MTR_8g036130 37.405 131 80 1 4 132 1 131 6.53e-22 95.5
MS.gene032489.t1 MTR_3g466830 31.613 155 106 0 6 160 2 156 9.19e-22 92.4
MS.gene032489.t1 MTR_4g032620 33.333 156 93 2 6 155 3 153 1.57e-21 94.0
MS.gene032489.t1 MTR_4g031910 37.179 156 94 2 1 155 1 153 2.13e-19 87.8
MS.gene032489.t1 MTR_2g016210 29.677 155 108 1 7 160 4 158 1.11e-18 85.9
MS.gene032489.t1 MTR_1g090710 33.913 115 75 1 6 120 3 116 1.50e-18 83.2
MS.gene032489.t1 MTR_3g466890 30.065 153 106 1 6 157 2 154 1.60e-18 83.2
MS.gene032489.t1 MTR_3g065100 32.051 156 106 0 6 161 3 158 2.59e-18 84.7
MS.gene032489.t1 MTR_3g031240 29.915 117 82 0 6 122 3 119 1.47e-17 81.3
MS.gene032489.t1 MTR_4g032260 39.583 96 58 0 37 132 34 129 3.58e-17 79.3
MS.gene032489.t1 MTR_2g035610 36.800 125 76 1 1 125 1 122 8.81e-17 77.0
MS.gene032489.t1 MTR_5g047580 35.833 120 73 2 1 120 1 116 9.25e-17 78.2
MS.gene032489.t1 MTR_4g063790 26.582 158 109 2 6 159 3 157 6.72e-16 75.9
MS.gene032489.t1 MTR_4g032290 29.870 154 93 3 37 175 34 187 8.39e-16 77.4
MS.gene032489.t1 MTR_4g028800 42.857 70 38 1 7 76 4 71 1.14e-15 72.4
MS.gene032489.t1 MTR_3g031100 29.060 117 83 0 6 122 3 119 1.80e-15 76.6
MS.gene032489.t1 MTR_1g090783 27.586 145 104 1 6 150 2 145 2.57e-15 73.9
MS.gene032489.t1 MTR_1g077390 29.167 144 93 3 6 141 3 145 2.78e-15 73.9
MS.gene032489.t1 MTR_1g090697 33.333 120 76 2 1 120 1 116 5.66e-15 72.8
MS.gene032489.t1 MTR_3g466900 30.645 124 85 1 35 157 2 125 3.46e-14 70.1
MS.gene032489.t1 MTR_3g466930 31.452 124 84 1 35 157 2 125 3.53e-14 70.1
MS.gene032489.t1 MTR_1g084950 37.815 119 69 2 6 120 3 120 1.82e-13 68.6
MS.gene032489.t1 MTR_4g028720 35.433 127 81 1 6 132 3 128 6.19e-13 67.0
MS.gene032489.t1 MTR_1g077300 30.723 166 97 4 6 167 3 154 1.01e-12 66.6
MS.gene032489.t1 MTR_1g077320 34.783 115 74 1 6 120 3 116 1.11e-12 66.2
MS.gene032489.t1 MTR_7g011950 33.858 127 83 1 6 132 3 128 2.20e-12 65.5
MS.gene032489.t1 MTR_3g467080 28.205 117 84 0 6 122 3 119 2.37e-12 65.5
MS.gene032489.t1 MTR_6g005450 27.397 146 91 5 8 147 5 141 5.85e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032489.t1 AT1G65300 36.522 115 73 0 6 120 2 116 3.39e-20 91.3
MS.gene032489.t1 AT2G40210 29.341 167 115 2 4 170 1 164 7.67e-20 91.7
MS.gene032489.t1 AT3G05860 31.126 151 99 3 1 150 1 147 9.47e-18 83.6
MS.gene032489.t1 AT3G05860 31.126 151 99 3 1 150 1 147 1.01e-17 83.6
MS.gene032489.t1 AT3G05860 31.126 151 99 3 1 150 1 147 3.77e-17 80.5
MS.gene032489.t1 AT5G26650 31.579 133 89 2 7 139 2 132 4.63e-17 83.2
MS.gene032489.t1 AT5G06500 30.000 150 104 1 6 155 3 151 5.64e-16 78.2
MS.gene032489.t1 AT1G31630 33.043 115 76 1 6 120 2 115 5.74e-16 79.7
MS.gene032489.t1 AT5G27960 30.075 133 91 2 7 139 2 132 7.39e-16 79.0
MS.gene032489.t1 AT1G22590 29.358 109 74 1 6 114 3 108 2.19e-15 74.3
MS.gene032489.t1 AT1G31640 32.174 115 77 1 6 120 2 115 3.67e-15 78.2
MS.gene032489.t1 AT1G65330 32.743 113 76 0 8 120 4 116 3.85e-15 76.3
MS.gene032489.t1 AT5G26630 34.637 179 106 5 1 177 1 170 6.11e-15 74.3
MS.gene032489.t1 AT5G48670 36.134 119 76 0 4 122 1 119 8.22e-15 75.9
MS.gene032489.t1 AT2G28700 27.941 204 134 6 4 203 1 195 1.33e-14 75.5
MS.gene032489.t1 AT2G15660 30.636 173 99 7 5 171 3 160 7.21e-14 72.0
MS.gene032489.t1 AT5G27810 32.184 87 59 0 34 120 3 89 6.26e-11 60.5

Find 104 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTTTCTCAAGGAAATA+TGG 0.173617 7.2:+76216426 MS.gene032489:CDS
TTGCCTCCTCAAGGATATTT+TGG 0.199048 7.2:+76216511 MS.gene032489:CDS
AGTATTATTCTCAATCAATT+TGG 0.203967 7.2:-76215558 None:intergenic
TTGGCTAATCAAGCCGATTT+TGG 0.211096 7.2:+76216244 MS.gene032489:CDS
CAAAATCTTCAAAGTTAAAT+TGG 0.246957 7.2:-76216756 None:intergenic
TTGACTCAAACCTGGTTATT+AGG 0.247950 7.2:-76215733 None:intergenic
GATTGTCACCTGCTCCATTT+TGG 0.265823 7.2:-76215624 None:intergenic
GGGCATTTCAGTAGCAATAT+TGG 0.280920 7.2:+76216448 MS.gene032489:CDS
GAAAGGGTTGTTCACCAAAA+TGG 0.296295 7.2:+76215610 MS.gene032489:CDS
AGAAAATGAAGAGACTTTAA+TGG 0.303503 7.2:+76215853 MS.gene032489:CDS
CCAACAACCCTTGTTAGATT+TGG 0.312296 7.2:+76216120 MS.gene032489:CDS
GAGGCATGTGCGGTTGTGTT+TGG 0.334552 7.2:+76215659 MS.gene032489:CDS
ATGACAACATAGATAACATT+TGG 0.344877 7.2:+76216674 MS.gene032489:CDS
TTTCTTTCTCAAGGAAATAT+GGG 0.363502 7.2:+76216427 MS.gene032489:CDS
AATGGTGATGGGGTACATTC+TGG 0.370012 7.2:+76216070 MS.gene032489:CDS
GGCATTTCAGTAGCAATATT+GGG 0.382881 7.2:+76216449 MS.gene032489:CDS
AGGCATGTGCGGTTGTGTTT+GGG 0.389221 7.2:+76215660 MS.gene032489:CDS
GTGATACAAAACCATCAATA+TGG 0.392745 7.2:+76215687 MS.gene032489:CDS
TTTGAAGATCAAGAAAACTT+TGG 0.393915 7.2:+76216643 MS.gene032489:CDS
TTTGAAGTTCAGGGGAACTT+TGG 0.396318 7.2:+76216865 MS.gene032489:CDS
GTTATCAAAATCGCCAAAAT+CGG 0.397560 7.2:-76216257 None:intergenic
CAGGTTTGAGTCAATGTCAT+TGG 0.398460 7.2:+76215742 MS.gene032489:CDS
AACTTTGGCAGCAATATTGA+TGG 0.399013 7.2:+76216982 MS.gene032489:CDS
AATTATTCCGAAGGAAATCC+AGG 0.399449 7.2:-76217066 None:intergenic
CTTCAACCCTGGATTTCCTT+CGG 0.403734 7.2:+76217059 MS.gene032489:CDS
GTAGGAGATGGCCATATTGA+TGG 0.410732 7.2:-76215698 None:intergenic
CTACCACATGCAAATTTGAA+TGG 0.411798 7.2:+76216589 MS.gene032489:CDS
ATGGTGATGGGGTACATTCT+GGG 0.421537 7.2:+76216071 MS.gene032489:CDS
GGCAGCAATATTGATGGAGA+TGG 0.423343 7.2:+76216988 MS.gene032489:CDS
GAAAATGAAGAGACTTTAAT+GGG 0.430958 7.2:+76215854 MS.gene032489:CDS
TTGTCTAAAGTAAAAGATAT+TGG 0.434434 7.2:-76216049 None:intergenic
CATTCTGGGGTTAACATGTA+TGG 0.436691 7.2:+76216085 MS.gene032489:CDS
TGTGCGGTTGTGTTTGGGCC+AGG 0.446264 7.2:+76215665 MS.gene032489:CDS
GGAGGTCAAAGCAACTTTCA+AGG 0.462180 7.2:+76216532 MS.gene032489:CDS
CATGATATGTTTCTTTCTCA+AGG 0.468470 7.2:+76216418 MS.gene032489:CDS
TACCACATGCAAATTTGAAT+GGG 0.473760 7.2:+76216590 MS.gene032489:CDS
TTTACTTTAGACAATGGTGA+TGG 0.480639 7.2:+76216058 MS.gene032489:CDS
GAAGATCAAGAAAACTTTGG+AGG 0.480766 7.2:+76216646 MS.gene032489:CDS
TACAAGAGCAACTTCAACCC+TGG 0.483870 7.2:+76217048 MS.gene032489:CDS
GAGGTCTAGGCATTTAGAAA+AGG 0.487608 7.2:+76215988 MS.gene032489:CDS
CCAAATCTAACAAGGGTTGT+TGG 0.489048 7.2:-76216120 None:intergenic
CCTACACCTCCAGATCTTAG+TGG 0.490566 7.2:+76216205 MS.gene032489:CDS
GAAGTTCAGGGGAACTTTGG+AGG 0.495790 7.2:+76216868 MS.gene032489:CDS
ATCAATATGGCCATCTCCTA+CGG 0.501169 7.2:+76215700 MS.gene032489:CDS
GATGGAGGAGGATTATTAAG+AGG 0.505755 7.2:-76216019 None:intergenic
AGATCACTAGAAAGAGGTCT+AGG 0.508379 7.2:+76215975 MS.gene032489:CDS
CAATCACCACCACTAAGATC+TGG 0.508447 7.2:-76216214 None:intergenic
CGCTATAAGAAAAGATTGAA+AGG 0.508733 7.2:+76215593 MS.gene032489:CDS
CAACATGCAAATTTGAGTGC+TGG 0.511397 7.2:+76216700 MS.gene032489:CDS
TTACTTTAGACAATGGTGAT+GGG 0.517853 7.2:+76216059 MS.gene032489:CDS
TGAGAATAATACTCAAAGAA+AGG 0.521008 7.2:+76215568 MS.gene032489:CDS
CCACTAAGATCTGGAGGTGT+AGG 0.531744 7.2:-76216205 None:intergenic
AACAACCATGGAAGTAGCAT+GGG 0.534265 7.2:+76216178 MS.gene032489:CDS
GCATCCCCATGCTACTTCCA+TGG 0.535942 7.2:-76216183 None:intergenic
GTTGTTCACCAAAATGGAGC+AGG 0.556851 7.2:+76215616 MS.gene032489:CDS
TCTTCAGCCACCGTAGGAGA+TGG 0.560949 7.2:-76215710 None:intergenic
AAATTAAGATCACTAGAAAG+AGG 0.562753 7.2:+76215969 MS.gene032489:CDS
TGGTGGTGATTGTGATAACT+TGG 0.565716 7.2:+76216225 MS.gene032489:CDS
TTTCTCGACCAAATCTAACA+AGG 0.571412 7.2:-76216128 None:intergenic
ATATCAACACCACCATTGCA+TGG 0.571473 7.2:-76216940 None:intergenic
AATATGGCCATCTCCTACGG+TGG 0.571701 7.2:+76215703 MS.gene032489:CDS
TACTTTAGACAATGGTGATG+GGG 0.572598 7.2:+76216060 MS.gene032489:CDS
TAATAATCCTCCTCCATCGT+TGG 0.573169 7.2:+76216024 MS.gene032489:CDS
ATTGGTGCCAACGATGGAGG+AGG 0.576273 7.2:-76216031 None:intergenic
CAATGACATTGACTCAAACC+TGG 0.576547 7.2:-76215741 None:intergenic
TAACAACCATGGAAGTAGCA+TGG 0.577578 7.2:+76216177 MS.gene032489:CDS
AAAGATATTGGTGCCAACGA+TGG 0.578886 7.2:-76216037 None:intergenic
GTAGGTGTGTTGCCTCCTCA+AGG 0.582180 7.2:+76216502 MS.gene032489:CDS
GCTATAAGAAAAGATTGAAA+GGG 0.593678 7.2:+76215594 MS.gene032489:CDS
TGGTGATGGGGTACATTCTG+GGG 0.594600 7.2:+76216072 MS.gene032489:CDS
GATATTGGTGCCAACGATGG+AGG 0.597015 7.2:-76216034 None:intergenic
GACAATCTTATGCGGCATTG+AGG 0.598018 7.2:+76215640 MS.gene032489:CDS
GCAGCAATATTGATGGAGAT+GGG 0.598875 7.2:+76216989 MS.gene032489:CDS
TTCTTTCTCAAGGAAATATG+GGG 0.600624 7.2:+76216428 MS.gene032489:CDS
ACATTATTGGTAGCAACGCA+AGG 0.601393 7.2:+76216563 MS.gene032489:CDS
CCAACACTAGGATTTGTATG+TGG 0.605205 7.2:-76216811 None:intergenic
TTCTCGACCAAATCTAACAA+GGG 0.605573 7.2:-76216127 None:intergenic
TCACCTGAAAATTCTAGTGG+TGG 0.615267 7.2:+76216307 MS.gene032489:CDS
AAAGTTGATCAAATGAGCAG+TGG 0.618596 7.2:+76216148 MS.gene032489:CDS
CCACATACAAATCCTAGTGT+TGG 0.620141 7.2:+76216811 MS.gene032489:CDS
ATTAGGTCTTCAGCCACCGT+AGG 0.620414 7.2:-76215716 None:intergenic
TTCCCATTCAAATTTGCATG+TGG 0.620497 7.2:-76216592 None:intergenic
CCACATGAAAATCCATGCAA+TGG 0.621453 7.2:+76216928 MS.gene032489:CDS
ATTATTCCGAAGGAAATCCA+GGG 0.624169 7.2:-76217065 None:intergenic
CCATCACCTGAAAATTCTAG+TGG 0.626301 7.2:+76216304 MS.gene032489:CDS
GAAAATCCTAGTGGTGGTGT+AGG 0.627650 7.2:+76216484 MS.gene032489:CDS
TCATCACATGAAAATCATAG+TGG 0.635133 7.2:+76216388 MS.gene032489:CDS
ATGCATCAAATTGAAAACGA+AGG 0.641960 7.2:+76215884 MS.gene032489:CDS
ACACTAGGATTTGTATGTGG+TGG 0.642124 7.2:-76216808 None:intergenic
AACACACCTACACCACCACT+AGG 0.650603 7.2:-76216490 None:intergenic
CCTCCAAAATATCCTTGAGG+AGG 0.656666 7.2:-76216514 None:intergenic
ATGATACATGTAGCAACATG+TGG 0.657144 7.2:+76216899 MS.gene032489:CDS
ATGCGGCATTGAGGCATGTG+CGG 0.658684 7.2:+76215649 MS.gene032489:CDS
CATGAAAATCCATGCAATGG+TGG 0.659017 7.2:+76216931 MS.gene032489:CDS
TGACCTCCAAAATATCCTTG+AGG 0.660910 7.2:-76216517 None:intergenic
TGGCTGAAGACCTAATAACC+AGG 0.668231 7.2:+76215723 MS.gene032489:CDS
TCACCACCACTAAGATCTGG+AGG 0.674015 7.2:-76216211 None:intergenic
TCACATGAAAATCCTAGTGG+TGG 0.674534 7.2:+76216478 MS.gene032489:CDS
ACAGCAACATTACCAACACT+AGG 0.677687 7.2:-76216823 None:intergenic
CAATCACATGAAAATCCTAG+TGG 0.684612 7.2:+76216475 MS.gene032489:CDS
ACACCTCCAGATCTTAGTGG+TGG 0.688719 7.2:+76216208 MS.gene032489:CDS
AGTGGTTTCAATAACAACCA+TGG 0.696939 7.2:+76216166 MS.gene032489:CDS
GAGCAGGTGACAATCTTATG+CGG 0.699387 7.2:+76215632 MS.gene032489:CDS
ACAACCATGGAAGTAGCATG+GGG 0.707731 7.2:+76216179 MS.gene032489:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATAACAACTTTTATAA+CGG + chr7.2:76216271-76216290 MS.gene032489:CDS 15.0%
!! AGTATTATTCTCAATCAATT+TGG - chr7.2:76215561-76215580 None:intergenic 20.0%
!! CAAAATCTTCAAAGTTAAAT+TGG - chr7.2:76216759-76216778 None:intergenic 20.0%
!!! AATTTTCATCAAAACAACTT+TGG + chr7.2:76216967-76216986 MS.gene032489:CDS 20.0%
!!! ATATCTTTTACTTTAGACAA+TGG + chr7.2:76216052-76216071 MS.gene032489:CDS 20.0%
!!! TTGTCTAAAGTAAAAGATAT+TGG - chr7.2:76216052-76216071 None:intergenic 20.0%
! AAATTAAGATCACTAGAAAG+AGG + chr7.2:76215969-76215988 MS.gene032489:CDS 25.0%
! AGAAAATGAAGAGACTTTAA+TGG + chr7.2:76215853-76215872 MS.gene032489:CDS 25.0%
! ATGACAACATAGATAACATT+TGG + chr7.2:76216674-76216693 MS.gene032489:CDS 25.0%
! GAAAATGAAGAGACTTTAAT+GGG + chr7.2:76215854-76215873 MS.gene032489:CDS 25.0%
! GCTATAAGAAAAGATTGAAA+GGG + chr7.2:76215594-76215613 MS.gene032489:CDS 25.0%
! TATCCTTCAAAAAAGTCAAT+TGG - chr7.2:76215793-76215812 None:intergenic 25.0%
! TGAGAATAATACTCAAAGAA+AGG + chr7.2:76215568-76215587 MS.gene032489:CDS 25.0%
! TTTCTTTCTCAAGGAAATAT+GGG + chr7.2:76216427-76216446 MS.gene032489:CDS 25.0%
! TTTGAAGATCAAGAAAACTT+TGG + chr7.2:76216643-76216662 MS.gene032489:CDS 25.0%
!! GATAATTTGGAAGATTTTGA+TGG + chr7.2:76216352-76216371 MS.gene032489:CDS 25.0%
!! TGATCTTCAAAATTTTCTTG+AGG - chr7.2:76216634-76216653 None:intergenic 25.0%
!!! ATTGACTTTTTTGAAGGATA+AGG + chr7.2:76215793-76215812 MS.gene032489:CDS 25.0%
!!! TGCGTTTTTTCAAGATAATT+TGG + chr7.2:76216339-76216358 MS.gene032489:CDS 25.0%
!!! TTGACTTTTTTGAAGGATAA+GGG + chr7.2:76215794-76215813 MS.gene032489:CDS 25.0%
ATGCATCAAATTGAAAACGA+AGG + chr7.2:76215884-76215903 MS.gene032489:CDS 30.0%
CATGATATGTTTCTTTCTCA+AGG + chr7.2:76216418-76216437 MS.gene032489:CDS 30.0%
CGCTATAAGAAAAGATTGAA+AGG + chr7.2:76215593-76215612 MS.gene032489:CDS 30.0%
GTGATACAAAACCATCAATA+TGG + chr7.2:76215687-76215706 MS.gene032489:CDS 30.0%
GTTATCAAAATCGCCAAAAT+CGG - chr7.2:76216260-76216279 None:intergenic 30.0%
GTTTCTTTCTCAAGGAAATA+TGG + chr7.2:76216426-76216445 MS.gene032489:CDS 30.0%
TACCACATGCAAATTTGAAT+GGG + chr7.2:76216590-76216609 MS.gene032489:CDS 30.0%
TCATCACATGAAAATCATAG+TGG + chr7.2:76216388-76216407 MS.gene032489:CDS 30.0%
TTACTTTAGACAATGGTGAT+GGG + chr7.2:76216059-76216078 MS.gene032489:CDS 30.0%
TTCTTTCTCAAGGAAATATG+GGG + chr7.2:76216428-76216447 MS.gene032489:CDS 30.0%
TTGCTTCCTCAAGAAAAATT+TGG + chr7.2:76216730-76216749 MS.gene032489:CDS 30.0%
TTTACTTTAGACAATGGTGA+TGG + chr7.2:76216058-76216077 MS.gene032489:CDS 30.0%
! AACAACTTTTATAACGGCAT+GGG + chr7.2:76216277-76216296 MS.gene032489:CDS 30.0%
! TAACAACTTTTATAACGGCA+TGG + chr7.2:76216276-76216295 MS.gene032489:CDS 30.0%
! TCTTCAAAATTTTCTTGAGG+AGG - chr7.2:76216631-76216650 None:intergenic 30.0%
!! CAAGGTTTTGATGACATTAT+TGG + chr7.2:76216550-76216569 MS.gene032489:CDS 30.0%
!!! AAGGAAATTTTGAAGTTCAG+GGG + chr7.2:76216857-76216876 MS.gene032489:CDS 30.0%
!!! CAAGGAAATTTTGAAGTTCA+GGG + chr7.2:76216856-76216875 MS.gene032489:CDS 30.0%
!!! TCAAGGAAATTTTGAAGTTC+AGG + chr7.2:76216855-76216874 MS.gene032489:CDS 30.0%
!!! TGACCAATTGACTTTTTTGA+AGG + chr7.2:76215787-76215806 MS.gene032489:CDS 30.0%
!!! TTTCTTTTTCGATCTTTGCA+AGG - chr7.2:76215838-76215857 None:intergenic 30.0%
AACTTTGGCAGCAATATTGA+TGG + chr7.2:76216982-76217001 MS.gene032489:CDS 35.0%
AGTGGTTTCAATAACAACCA+TGG + chr7.2:76216166-76216185 MS.gene032489:CDS 35.0%
ATGATACATGTAGCAACATG+TGG + chr7.2:76216899-76216918 MS.gene032489:CDS 35.0%
CAATCACATGAAAATCCTAG+TGG + chr7.2:76216475-76216494 MS.gene032489:CDS 35.0%
CTACCACATGCAAATTTGAA+TGG + chr7.2:76216589-76216608 MS.gene032489:CDS 35.0%
GAAGATCAAGAAAACTTTGG+AGG + chr7.2:76216646-76216665 MS.gene032489:CDS 35.0%
GGCATTTCAGTAGCAATATT+GGG + chr7.2:76216449-76216468 MS.gene032489:CDS 35.0%
TTCCCATTCAAATTTGCATG+TGG - chr7.2:76216595-76216614 None:intergenic 35.0%
TTCTCGACCAAATCTAACAA+GGG - chr7.2:76216130-76216149 None:intergenic 35.0%
TTGACTCAAACCTGGTTATT+AGG - chr7.2:76215736-76215755 None:intergenic 35.0%
TTTCTCGACCAAATCTAACA+AGG - chr7.2:76216131-76216150 None:intergenic 35.0%
! AAACCACCACTAGAATTTTC+AGG - chr7.2:76216313-76216332 None:intergenic 35.0%
! AAAGTTGATCAAATGAGCAG+TGG + chr7.2:76216148-76216167 MS.gene032489:CDS 35.0%
! TACTTTAGACAATGGTGATG+GGG + chr7.2:76216060-76216079 MS.gene032489:CDS 35.0%
! TGGTCTCCAAATTTTTCTTG+AGG - chr7.2:76216739-76216758 None:intergenic 35.0%
!!! ATTGATGGTTTTGTATCACC+TGG - chr7.2:76215686-76215705 None:intergenic 35.0%
AACAACCATGGAAGTAGCAT+GGG + chr7.2:76216178-76216197 MS.gene032489:CDS 40.0%
ACACTAGGATTTGTATGTGG+TGG - chr7.2:76216811-76216830 None:intergenic 40.0%
ACAGCAACATTACCAACACT+AGG - chr7.2:76216826-76216845 None:intergenic 40.0%
AGATCACTAGAAAGAGGTCT+AGG + chr7.2:76215975-76215994 MS.gene032489:CDS 40.0%
ATATCAACACCACCATTGCA+TGG - chr7.2:76216943-76216962 None:intergenic 40.0%
ATCAATATGGCCATCTCCTA+CGG + chr7.2:76215700-76215719 MS.gene032489:CDS 40.0%
CAACATGCAAATTTGAGTGC+TGG + chr7.2:76216700-76216719 MS.gene032489:CDS 40.0%
CAGGTTTGAGTCAATGTCAT+TGG + chr7.2:76215742-76215761 MS.gene032489:CDS 40.0%
CATGAAAATCCATGCAATGG+TGG + chr7.2:76216931-76216950 MS.gene032489:CDS 40.0%
CCAAATCTAACAAGGGTTGT+TGG - chr7.2:76216123-76216142 None:intergenic 40.0%
CCAACAACCCTTGTTAGATT+TGG + chr7.2:76216120-76216139 MS.gene032489:CDS 40.0%
CCAACACTAGGATTTGTATG+TGG - chr7.2:76216814-76216833 None:intergenic 40.0%
CCACATACAAATCCTAGTGT+TGG + chr7.2:76216811-76216830 MS.gene032489:CDS 40.0%
CCACATGAAAATCCATGCAA+TGG + chr7.2:76216928-76216947 MS.gene032489:CDS 40.0%
CCATCACCTGAAAATTCTAG+TGG + chr7.2:76216304-76216323 MS.gene032489:CDS 40.0%
GAAAGGGTTGTTCACCAAAA+TGG + chr7.2:76215610-76215629 MS.gene032489:CDS 40.0%
GAGGTCTAGGCATTTAGAAA+AGG + chr7.2:76215988-76216007 MS.gene032489:CDS 40.0%
GATGGAGGAGGATTATTAAG+AGG - chr7.2:76216022-76216041 None:intergenic 40.0%
GCAGCAATATTGATGGAGAT+GGG + chr7.2:76216989-76217008 MS.gene032489:CDS 40.0%
GGGCATTTCAGTAGCAATAT+TGG + chr7.2:76216448-76216467 MS.gene032489:CDS 40.0%
TAACAACCATGGAAGTAGCA+TGG + chr7.2:76216177-76216196 MS.gene032489:CDS 40.0%
TAATAATCCTCCTCCATCGT+TGG + chr7.2:76216024-76216043 MS.gene032489:CDS 40.0%
TCACATGAAAATCCTAGTGG+TGG + chr7.2:76216478-76216497 MS.gene032489:CDS 40.0%
TCACCTGAAAATTCTAGTGG+TGG + chr7.2:76216307-76216326 MS.gene032489:CDS 40.0%
TGACCTCCAAAATATCCTTG+AGG - chr7.2:76216520-76216539 None:intergenic 40.0%
! ACATTATTGGTAGCAACGCA+AGG + chr7.2:76216563-76216582 MS.gene032489:CDS 40.0%
! CCATTGCATGGATTTTCATG+TGG - chr7.2:76216931-76216950 None:intergenic 40.0%
! TGGTGGTGATTGTGATAACT+TGG + chr7.2:76216225-76216244 MS.gene032489:CDS 40.0%
! TTGCATGGATTTTCATGTGG+AGG - chr7.2:76216928-76216947 None:intergenic 40.0%
! TTGCCTCCTCAAGGATATTT+TGG + chr7.2:76216511-76216530 MS.gene032489:CDS 40.0%
! TTTGAAGTTCAGGGGAACTT+TGG + chr7.2:76216865-76216884 MS.gene032489:CDS 40.0%
!! AAAGATATTGGTGCCAACGA+TGG - chr7.2:76216040-76216059 None:intergenic 40.0%
!! CAATGACATTGACTCAAACC+TGG - chr7.2:76215744-76215763 None:intergenic 40.0%
!! CATTCTGGGGTTAACATGTA+TGG + chr7.2:76216085-76216104 MS.gene032489:CDS 40.0%
!! TTGGCTAATCAAGCCGATTT+TGG + chr7.2:76216244-76216263 MS.gene032489:CDS 40.0%
!!! CCACTAGAATTTTCAGGTGA+TGG - chr7.2:76216307-76216326 None:intergenic 40.0%
!!! GGAAGATTTTGATGGTGTCA+TGG + chr7.2:76216360-76216379 MS.gene032489:CDS 40.0%
!!! GTTGCTGTTTTGTCTCATCA+AGG + chr7.2:76216838-76216857 MS.gene032489:CDS 40.0%
ACAACCATGGAAGTAGCATG+GGG + chr7.2:76216179-76216198 MS.gene032489:CDS 45.0%
CAATCACCACCACTAAGATC+TGG - chr7.2:76216217-76216236 None:intergenic 45.0%
CCTCCAAAATATCCTTGAGG+AGG - chr7.2:76216517-76216536 None:intergenic 45.0%
CTTCAACCCTGGATTTCCTT+CGG + chr7.2:76217059-76217078 MS.gene032489:CDS 45.0%
GACAATCTTATGCGGCATTG+AGG + chr7.2:76215640-76215659 MS.gene032489:CDS 45.0%
GAGCAGGTGACAATCTTATG+CGG + chr7.2:76215632-76215651 MS.gene032489:CDS 45.0%
GGAGGTCAAAGCAACTTTCA+AGG + chr7.2:76216532-76216551 MS.gene032489:CDS 45.0%
GGCAGCAATATTGATGGAGA+TGG + chr7.2:76216988-76217007 MS.gene032489:CDS 45.0%
GTAGGAGATGGCCATATTGA+TGG - chr7.2:76215701-76215720 None:intergenic 45.0%
GTTGTTCACCAAAATGGAGC+AGG + chr7.2:76215616-76215635 MS.gene032489:CDS 45.0%
TACAAGAGCAACTTCAACCC+TGG + chr7.2:76217048-76217067 MS.gene032489:CDS 45.0%
TGGCTGAAGACCTAATAACC+AGG + chr7.2:76215723-76215742 MS.gene032489:CDS 45.0%
! GAAAATCCTAGTGGTGGTGT+AGG + chr7.2:76216484-76216503 MS.gene032489:CDS 45.0%
! GATTGTCACCTGCTCCATTT+TGG - chr7.2:76215627-76215646 None:intergenic 45.0%
!! AATGGTGATGGGGTACATTC+TGG + chr7.2:76216070-76216089 MS.gene032489:CDS 45.0%
!! ATGGTGATGGGGTACATTCT+GGG + chr7.2:76216071-76216090 MS.gene032489:CDS 45.0%
!! CCTCCTCAAGGATATTTTGG+AGG + chr7.2:76216514-76216533 MS.gene032489:CDS 45.0%
AACACACCTACACCACCACT+AGG - chr7.2:76216493-76216512 None:intergenic 50.0%
AATATGGCCATCTCCTACGG+TGG + chr7.2:76215703-76215722 MS.gene032489:CDS 50.0%
ACACCTCCAGATCTTAGTGG+TGG + chr7.2:76216208-76216227 MS.gene032489:CDS 50.0%
AGGCATGTGCGGTTGTGTTT+GGG + chr7.2:76215660-76215679 MS.gene032489:CDS 50.0%
ATTAGGTCTTCAGCCACCGT+AGG - chr7.2:76215719-76215738 None:intergenic 50.0%
CCTACACCTCCAGATCTTAG+TGG + chr7.2:76216205-76216224 MS.gene032489:CDS 50.0%
GAAGTTCAGGGGAACTTTGG+AGG + chr7.2:76216868-76216887 MS.gene032489:CDS 50.0%
TCACCACCACTAAGATCTGG+AGG - chr7.2:76216214-76216233 None:intergenic 50.0%
! CCACTAAGATCTGGAGGTGT+AGG - chr7.2:76216208-76216227 None:intergenic 50.0%
!! GATATTGGTGCCAACGATGG+AGG - chr7.2:76216037-76216056 None:intergenic 50.0%
!! TGGTGATGGGGTACATTCTG+GGG + chr7.2:76216072-76216091 MS.gene032489:CDS 50.0%
GAGGCATGTGCGGTTGTGTT+TGG + chr7.2:76215659-76215678 MS.gene032489:CDS 55.0%
GTAGGTGTGTTGCCTCCTCA+AGG + chr7.2:76216502-76216521 MS.gene032489:CDS 55.0%
TCTTCAGCCACCGTAGGAGA+TGG - chr7.2:76215713-76215732 None:intergenic 55.0%
! ATGCGGCATTGAGGCATGTG+CGG + chr7.2:76215649-76215668 MS.gene032489:CDS 55.0%
! GCATCCCCATGCTACTTCCA+TGG - chr7.2:76216186-76216205 None:intergenic 55.0%
!! ATTGGTGCCAACGATGGAGG+AGG - chr7.2:76216034-76216053 None:intergenic 55.0%
TGTGCGGTTGTGTTTGGGCC+AGG + chr7.2:76215665-76215684 MS.gene032489:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 76215527 76217086 76215527 ID=MS.gene032489
chr7.2 mRNA 76215527 76217086 76215527 ID=MS.gene032489.t1;Parent=MS.gene032489
chr7.2 exon 76215527 76217086 76215527 ID=MS.gene032489.t1.exon1;Parent=MS.gene032489.t1
chr7.2 CDS 76215527 76217086 76215527 ID=cds.MS.gene032489.t1;Parent=MS.gene032489.t1
Gene Sequence

>MS.gene032489

ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGCTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGCGGCATTGAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAGGTTTGAGTCAATGTCATTGGATGTACAATCAAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTAGAAGCAAGCCTTGCAAAGATCGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCAGAATCGCTTGATTGCATTTATTCTTGAAAAAATTAAGATCACTAGAAAGAGGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTCCTCCATCGTTGGCACCAATATCTTTTACTTTAGACAATGGTGATGGGGTACATTCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGATCAAATGAGCAGTGGTTTCAATAACAACCATGGAAGTAGCATGGGGATGCCTACACCTCCAGATCTTAGTGGTGGTGATTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAACTTTTATAACGGCATGGGAATACCATCACCTGAAAATTCTAGTGGTGGTTTTGATGCTGCGTTTTTTCAAGATAATTTGGAAGATTTTGATGGTGTCATGGAGATATCATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTTCTCAAGGAAATATGGGGCATTTCAGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTATTGGTAGCAACGCAAGGATACTACCACATGCAAATTTGAATGGGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGATAACATTTGGATACAACATGCAAATTTGAGTGCTGGTAATACATTGCTTCCTCAAGAAAAATTTGGAGACCAATTTAACTTTGAAGATTTTGATAACAATGCAATTAGCAACATGTTGATACCACCACATACAAATCCTAGTGTTGGTAATGTTGCTGTTTTGTCTCATCAAGGAAATTTTGAAGTTCAGGGGAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCATGCAATGGTGGTGTTGATATGATGAATTTTCATCAAAACAACTTTGGCAGCAATATTGATGGAGATGGGATGCAGAGTTTTAATGCGAACTTTGTTGACAATAATTACAAGAGCAACTTCAACCCTGGATTTCCTTCGGAATAA
Protein sequence

>MS.gene032489.t1

MTRIRKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIEACAVVFGPGDTKPSIWPSPTVAEDLITRFESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVQNRLIAFILEKIKITRKRSRHLEKEILPLNNPPPSLAPISFTLDNGDGVHSGVNMYGHVLNQQPLLDLVEKVDQMSSGFNNNHGSSMGMPTPPDLSGGDCDNLANQADFGDFDNNFYNGMGIPSPENSSGGFDAAFFQDNLEDFDGVMEISSHENHSGSVHDMFLSQGNMGHFSSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDIIGSNARILPHANLNGNVDLLPPQENFEDQENFGGFDDNIDNIWIQHANLSAGNTLLPQEKFGDQFNFEDFDNNAISNMLIPPHTNPSVGNVAVLSHQGNFEVQGNFGGFDDDTCSNMWKPPHENPCNGGVDMMNFHQNNFGSNIDGDGMQSFNANFVDNNYKSNFNPGFPSE