AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032565

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032565.t1 MTR_7g024670 91.420 338 22 4 1 335 40 373 0.0 550
MS.gene032565.t1 MTR_4g022370 40.461 304 153 9 9 308 55 334 2.36e-51 174
MS.gene032565.t1 MTR_7g059400 37.736 318 152 11 13 323 53 331 3.32e-41 147
MS.gene032565.t1 MTR_4g063780 40.476 252 99 11 16 252 55 270 3.15e-40 144
MS.gene032565.t1 MTR_2g096740 41.176 238 70 10 16 235 26 211 9.69e-40 142
MS.gene032565.t1 MTR_2g096740 41.176 238 70 10 16 235 41 226 1.08e-39 142
MS.gene032565.t1 MTR_8g479350 77.778 63 14 0 39 101 69 131 1.14e-31 122
MS.gene032565.t1 MTR_8g068210 57.143 91 29 1 12 102 16 96 1.02e-30 119
MS.gene032565.t1 MTR_8g079060 59.551 89 29 2 40 122 31 118 3.50e-30 115
MS.gene032565.t1 MTR_4g088580 74.194 62 16 0 39 100 56 117 8.47e-30 117
MS.gene032565.t1 MTR_3g091820 57.609 92 34 1 1 92 11 97 2.46e-29 114
MS.gene032565.t1 MTR_2g014060 56.311 103 37 2 23 118 11 112 3.08e-29 115
MS.gene032565.t1 MTR_3g090430 46.825 126 53 3 37 162 50 161 3.31e-29 115
MS.gene032565.t1 MTR_8g015840 66.667 75 24 1 20 93 1 75 3.54e-29 112
MS.gene032565.t1 MTR_5g031440 88.000 50 6 0 39 88 44 93 1.10e-28 113
MS.gene032565.t1 MTR_4g109980 86.538 52 7 0 37 88 39 90 1.47e-28 112
MS.gene032565.t1 MTR_3g077750 57.955 88 32 2 1 88 29 111 1.93e-28 112
MS.gene032565.t1 MTR_4g461080 83.333 54 9 0 37 90 28 81 3.39e-28 110
MS.gene032565.t1 MTR_8g027295 72.464 69 14 1 40 103 26 94 1.08e-27 109
MS.gene032565.t1 MTR_1g077600 60.274 73 29 0 22 94 27 99 1.67e-27 108
MS.gene032565.t1 MTR_1g077600 60.274 73 29 0 22 94 27 99 1.90e-27 109
MS.gene032565.t1 MTR_2g093220 78.571 56 12 0 37 92 39 94 3.73e-27 108
MS.gene032565.t1 MTR_2g059540 88.000 50 6 0 37 86 30 79 7.32e-27 105
MS.gene032565.t1 MTR_2g014170 86.000 50 7 0 37 86 44 93 1.43e-26 107
MS.gene032565.t1 MTR_1g056810 79.245 53 11 0 40 92 14 66 3.21e-26 105
MS.gene032565.t1 MTR_2g013370 58.333 84 30 2 12 95 23 101 6.09e-26 104
MS.gene032565.t1 MTR_4g089095 78.571 56 10 1 40 95 52 105 1.56e-25 104
MS.gene032565.t1 MTR_4g089095 78.571 56 10 1 40 95 18 71 2.05e-25 103
MS.gene032565.t1 MTR_6g012450 76.471 51 12 0 40 90 138 188 1.17e-23 101
MS.gene032565.t1 MTR_2g016030 76.000 50 12 0 40 89 49 98 1.63e-23 95.5
MS.gene032565.t1 MTR_7g010950 74.510 51 13 0 40 90 137 187 6.94e-23 99.4
MS.gene032565.t1 MTR_4g082060 56.962 79 23 2 40 118 124 191 7.22e-23 99.4
MS.gene032565.t1 MTR_8g044220 69.811 53 16 0 40 92 120 172 1.04e-22 98.6
MS.gene032565.t1 MTR_3g435480 67.213 61 16 1 40 100 138 194 1.56e-22 98.2
MS.gene032565.t1 MTR_6g027450 57.534 73 27 1 18 90 73 141 4.28e-22 95.5
MS.gene032565.t1 MTR_5g041420 49.412 85 41 1 6 90 108 190 6.98e-22 94.7
MS.gene032565.t1 MTR_7g086780 67.241 58 18 1 39 96 100 156 8.27e-22 95.9
MS.gene032565.t1 MTR_5g041530 68.966 58 17 1 40 97 142 198 1.41e-21 94.7
MS.gene032565.t1 MTR_5g041380 39.130 161 74 7 1 153 95 239 2.65e-21 93.6
MS.gene032565.t1 MTR_6g027460 67.308 52 17 0 39 90 97 148 3.35e-21 93.6
MS.gene032565.t1 MTR_5g041400 43.548 124 47 4 40 153 121 231 8.44e-21 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032565.t1 AT3G55370 37.000 300 128 13 4 286 46 301 2.81e-38 139
MS.gene032565.t1 AT3G55370 40.086 232 98 8 4 235 46 236 2.83e-37 136
MS.gene032565.t1 AT3G55370 40.086 232 98 8 4 235 91 281 3.63e-37 137
MS.gene032565.t1 AT2G37590 72.152 79 20 1 16 94 69 145 5.42e-35 130
MS.gene032565.t1 AT1G07640 70.732 82 22 1 14 95 55 134 2.32e-34 129
MS.gene032565.t1 AT1G07640 72.727 77 19 1 19 95 4 78 2.63e-34 127
MS.gene032565.t1 AT1G07640 70.732 82 22 1 14 95 63 142 3.02e-34 128
MS.gene032565.t1 AT5G02460 70.130 77 21 1 16 92 75 149 1.01e-32 125
MS.gene032565.t1 AT2G28810 34.768 302 130 8 22 311 62 308 2.20e-32 123
MS.gene032565.t1 AT2G28810 34.768 302 130 8 22 311 79 325 2.28e-32 123
MS.gene032565.t1 AT1G51700 79.032 62 13 0 39 100 34 95 3.66e-31 116
MS.gene032565.t1 AT5G60200 58.889 90 31 2 37 122 54 141 1.57e-30 116
MS.gene032565.t1 AT5G65590 80.328 61 12 0 39 99 42 102 1.79e-30 118
MS.gene032565.t1 AT2G28510 80.952 63 10 1 37 99 47 107 2.93e-30 117
MS.gene032565.t1 AT1G21340 56.322 87 37 1 10 95 9 95 3.26e-30 115
MS.gene032565.t1 AT5G66940 52.294 109 45 2 40 141 34 142 6.21e-30 114
MS.gene032565.t1 AT5G60850 56.989 93 33 2 28 113 38 130 8.58e-30 115
MS.gene032565.t1 AT3G21270 83.929 56 9 0 39 94 30 85 1.38e-29 112
MS.gene032565.t1 AT3G45610 51.961 102 38 2 1 102 11 101 5.73e-29 112
MS.gene032565.t1 AT5G62940 88.235 51 6 0 38 88 73 123 2.29e-28 113
MS.gene032565.t1 AT4G38000 71.212 66 19 0 39 104 42 107 9.02e-28 108
MS.gene032565.t1 AT3G50410 75.439 57 14 0 40 96 32 88 1.66e-27 108
MS.gene032565.t1 AT1G28310 75.439 57 14 0 39 95 28 84 3.14e-27 109
MS.gene032565.t1 AT3G52440 57.778 90 31 2 34 123 21 103 4.04e-27 107
MS.gene032565.t1 AT1G28310 75.439 57 14 0 39 95 52 108 4.24e-27 109
MS.gene032565.t1 AT3G52440 70.769 65 18 1 34 98 40 103 6.06e-27 107
MS.gene032565.t1 AT3G61850 41.353 133 58 2 40 172 64 176 1.05e-26 107
MS.gene032565.t1 AT3G61850 41.353 133 58 2 40 172 64 176 1.05e-26 107
MS.gene032565.t1 AT3G61850 41.353 133 58 2 40 172 76 188 1.23e-26 107
MS.gene032565.t1 AT4G00940 60.274 73 29 0 20 92 50 122 5.11e-26 105
MS.gene032565.t1 AT4G00940 60.274 73 29 0 20 92 50 122 5.11e-26 105
MS.gene032565.t1 AT4G00940 60.274 73 29 0 20 92 50 122 5.11e-26 105
MS.gene032565.t1 AT4G21050 64.706 68 23 1 37 104 23 89 1.40e-25 102
MS.gene032565.t1 AT3G61850 62.857 70 26 0 40 109 76 145 1.54e-25 104
MS.gene032565.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.61e-25 104
MS.gene032565.t1 AT4G24060 75.000 56 14 0 37 92 52 107 2.99e-25 104
MS.gene032565.t1 AT1G47655 75.000 52 13 0 35 86 26 77 1.50e-23 96.7
MS.gene032565.t1 AT2G46590 84.783 46 7 0 40 85 70 115 2.62e-23 99.4
MS.gene032565.t1 AT2G46590 84.783 46 7 0 40 85 82 127 2.77e-23 99.4
MS.gene032565.t1 AT3G47500 74.510 51 13 0 40 90 112 162 3.73e-23 99.8
MS.gene032565.t1 AT1G29160 75.472 53 12 1 40 92 64 115 4.39e-23 94.7
MS.gene032565.t1 AT2G34140 75.472 53 12 1 40 92 60 111 5.49e-23 94.4
MS.gene032565.t1 AT1G64620 76.471 51 12 0 37 87 48 98 5.77e-23 98.2
MS.gene032565.t1 AT1G69570 74.510 51 13 0 40 90 134 184 1.12e-22 98.2
MS.gene032565.t1 AT5G62430 54.167 72 32 1 19 90 36 106 1.69e-22 95.9
MS.gene032565.t1 AT5G39660 55.000 80 25 2 40 119 140 208 2.01e-22 97.8
MS.gene032565.t1 AT5G39660 55.000 80 25 2 40 119 140 208 2.01e-22 97.8
MS.gene032565.t1 AT5G39660 55.000 80 25 2 40 119 140 208 2.01e-22 97.8
MS.gene032565.t1 AT4G21040 51.064 94 35 2 40 133 27 109 7.03e-22 92.8
MS.gene032565.t1 AT1G26790 54.286 70 30 1 21 90 96 163 9.03e-22 95.1
MS.gene032565.t1 AT4G21080 61.538 65 23 1 40 104 27 89 8.58e-21 90.1
MS.gene032565.t1 AT4G21030 57.692 52 22 0 40 91 23 74 2.54e-14 70.9

Find 71 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAACTTGTCGTCGTTAT+TGG 0.174969 7.2:+74930443 MS.gene032565:CDS
GAAATAGTAATGATCTATTT+TGG 0.191335 7.2:+74931148 MS.gene032565:CDS
CAAATTGGATTATTTCAATT+TGG 0.211059 7.2:+74930964 MS.gene032565:CDS
AGTAATTTGCAACCACAAAT+TGG 0.232158 7.2:+74930949 MS.gene032565:CDS
GCAAATTCTTCTTCTAATAA+TGG 0.247534 7.2:+74930628 MS.gene032565:CDS
GTGCTGCTGCAGCATCATTC+TGG 0.303371 7.2:-74930339 None:intergenic
GACCGAAACAAATTTCTTTG+TGG 0.341322 7.2:-74931006 None:intergenic
TGAGGGCATTGGTTCTTTGT+TGG 0.348674 7.2:+74930750 MS.gene032565:CDS
CAATTTGGTGGAGAAAATAA+TGG 0.350809 7.2:+74930979 MS.gene032565:CDS
TGGAGATGATCGTTATGATT+AGG 0.351307 7.2:-74930565 None:intergenic
CTTGGTAGTGGTTCTTCAAT+TGG 0.353175 7.2:+74930817 MS.gene032565:CDS
TGATGAACTTGTAGCGAATT+CGG 0.372887 7.2:-74930898 None:intergenic
CAGGTCGGTGCCGGTGCTGC+TGG 0.390469 7.2:+74930586 MS.gene032565:CDS
AATTGAAATAATCCAATTTG+TGG 0.391831 7.2:-74930961 None:intergenic
CTGTTGGAGGTGGTTGTAGA+AGG 0.393447 7.2:+74930494 MS.gene032565:CDS
AGCCACAAAGAAATTTGTTT+CGG 0.401716 7.2:+74931004 MS.gene032565:CDS
CATTGTTCACCAATGCCATT+TGG 0.402281 7.2:-74930868 None:intergenic
GTGTTTGTTGATTCACATCT+TGG 0.421696 7.2:-74930370 None:intergenic
AAGAAATTTGTTTCGGTCGA+AGG 0.427281 7.2:+74931011 MS.gene032565:CDS
ATTGGATTATTTCAATTTGG+TGG 0.443223 7.2:+74930967 MS.gene032565:CDS
TATTCTTCAAGTGTTAGTAT+TGG 0.447776 7.2:+74931039 MS.gene032565:CDS
CAGCAGCACCGGCACCGACC+TGG 0.456075 7.2:-74930585 None:intergenic
AACCAAAAGCACTAGATTTG+AGG 0.456139 7.2:-74931246 None:intergenic
TCAAGTTAATACAGTTAAAG+TGG 0.456282 7.2:+74931071 MS.gene032565:CDS
GGTTGCAAATTACTCAAGAA+AGG 0.462145 7.2:-74930940 None:intergenic
GTTACAAATGGAAATTGTGT+TGG 0.468460 7.2:-74930691 None:intergenic
CTTCTACAACCACCTCCAAC+AGG 0.475660 7.2:-74930493 None:intergenic
CGAAACGTTCCTGTTGGAGG+TGG 0.475928 7.2:+74930484 MS.gene032565:CDS
TCTTCAATTGGTAATGGTAA+TGG 0.476358 7.2:+74930829 MS.gene032565:CDS
AGTGGTTCTTCAATTGGTAA+TGG 0.485640 7.2:+74930823 MS.gene032565:CDS
GCTCGATCGGTCATTGATAC+TGG 0.489149 7.2:-74930298 None:intergenic
TGATGTAAAGAGGTTACAAA+TGG 0.490755 7.2:-74930703 None:intergenic
CTTCGAAACGTTCCTGTTGG+AGG 0.496892 7.2:+74930481 MS.gene032565:CDS
GTTGAGTTTCAACTTGGTAG+TGG 0.507591 7.2:+74930805 MS.gene032565:CDS
ATACTGGTCTTCTAGACCCT+TGG 0.510341 7.2:-74930282 None:intergenic
AGTTATGTTTCTGAGGGCAT+TGG 0.510514 7.2:+74930739 MS.gene032565:CDS
GTTGCAAATTACTCAAGAAA+GGG 0.514735 7.2:-74930939 None:intergenic
GGAAATTGTGTTGGAAAATG+AGG 0.514769 7.2:-74930682 None:intergenic
GATCATCTCCAGGTCGGTGC+CGG 0.519214 7.2:+74930577 MS.gene032565:CDS
GGCTCTTTGTTGATACCAAA+TGG 0.520108 7.2:+74930853 MS.gene032565:CDS
CGACAATAGTTATGTTTCTG+AGG 0.521037 7.2:+74930732 MS.gene032565:CDS
GACAATAGTTATGTTTCTGA+GGG 0.522293 7.2:+74930733 MS.gene032565:CDS
CTGGTGGTTCTAGCTCAGCA+AGG 0.527734 7.2:+74930605 MS.gene032565:CDS
GAAGCTGATGGCAGCTACCA+AGG 0.530104 7.2:+74930265 MS.gene032565:CDS
CAAGGTGGTGAAATGAAACT+AGG 0.536614 7.2:-74931219 None:intergenic
GCTAGAACCACCAGCAGCAC+CGG 0.537679 7.2:-74930596 None:intergenic
GCACTTCGAAACGTTCCTGT+TGG 0.543248 7.2:+74930478 MS.gene032565:CDS
ACTTTAACTGTATTAACTTG+AGG 0.543542 7.2:-74931069 None:intergenic
TCGTTATGATTAGGTTTCAA+AGG 0.544754 7.2:-74930556 None:intergenic
ACTAATTCTAATGTGAATGT+TGG 0.552195 7.2:+74930655 MS.gene032565:CDS
CACTAGATTTGAGGATCACA+AGG 0.554201 7.2:-74931237 None:intergenic
GTGGAAGAAAACAATCATCA+AGG 0.560168 7.2:+74931090 MS.gene032565:CDS
CTTTGACATCTTAGCTCGAT+CGG 0.562486 7.2:-74930311 None:intergenic
GTCGCTATGATGATGTAAAG+AGG 0.570699 7.2:-74930713 None:intergenic
TAATCATAACGATCATCTCC+AGG 0.573464 7.2:+74930567 MS.gene032565:CDS
GTCGGTGCCGGTGCTGCTGG+TGG 0.577708 7.2:+74930589 MS.gene032565:CDS
GTAGCTGCCATCAGCTTCAA+CGG 0.578179 7.2:-74930260 None:intergenic
TCAATTGGTAATGGTAATGG+TGG 0.579040 7.2:+74930832 MS.gene032565:CDS
CGTCGTTATTGGACTAGAGG+TGG 0.585783 7.2:+74930454 MS.gene032565:CDS
TCTGTCACCGTTGAAGCTGA+TGG 0.588932 7.2:+74930253 MS.gene032565:CDS
ACTAATGTTGAGTTTCAACT+TGG 0.589155 7.2:+74930799 MS.gene032565:CDS
AAGCTGATGGCAGCTACCAA+GGG 0.593247 7.2:+74930266 MS.gene032565:CDS
CAAATGGCATTGGTGAACAA+TGG 0.594140 7.2:+74930869 MS.gene032565:CDS
TGTCGTCGTTATTGGACTAG+AGG 0.602398 7.2:+74930451 MS.gene032565:CDS
ATGGCATTGGTGAACAATGG+AGG 0.607659 7.2:+74930872 MS.gene032565:CDS
AATGGAAATGGAAATGGAAG+TGG 0.608244 7.2:+74931171 MS.gene032565:CDS
GAAGTGGTAATGAAAATGCA+TGG 0.613061 7.2:+74931187 MS.gene032565:CDS
TTGTTGATACCAAATGGCAT+TGG 0.626903 7.2:+74930859 MS.gene032565:CDS
TGGTGGTTCTAGCTCAGCAA+GGG 0.640666 7.2:+74930606 MS.gene032565:CDS
CATAACGATCATCTCCAGGT+CGG 0.682152 7.2:+74930571 MS.gene032565:CDS
TAGATTTGAGGATCACAAGG+TGG 0.736101 7.2:-74931234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAATAATCCAATTTG+TGG - chr7.2:74930964-74930983 None:intergenic 20.0%
!! CAAATTGGATTATTTCAATT+TGG + chr7.2:74930964-74930983 MS.gene032565:CDS 20.0%
!!! GAAATAGTAATGATCTATTT+TGG + chr7.2:74931148-74931167 MS.gene032565:CDS 20.0%
! ACTAATTCTAATGTGAATGT+TGG + chr7.2:74930655-74930674 MS.gene032565:CDS 25.0%
! ATTGGATTATTTCAATTTGG+TGG + chr7.2:74930967-74930986 MS.gene032565:CDS 25.0%
! GCAAATTCTTCTTCTAATAA+TGG + chr7.2:74930628-74930647 MS.gene032565:CDS 25.0%
! TATTCTTCAAGTGTTAGTAT+TGG + chr7.2:74931039-74931058 MS.gene032565:CDS 25.0%
! TCAAGTTAATACAGTTAAAG+TGG + chr7.2:74931071-74931090 MS.gene032565:CDS 25.0%
!! ACTTTAACTGTATTAACTTG+AGG - chr7.2:74931072-74931091 None:intergenic 25.0%
!! AGTACTATTGCTCATATTTT+TGG - chr7.2:74930776-74930795 None:intergenic 25.0%
!!! AGTAATGATCTATTTTGGAA+TGG + chr7.2:74931153-74931172 MS.gene032565:CDS 25.0%
AAAAATCTCTTGAATGGTTC+AGG + chr7.2:74931126-74931145 MS.gene032565:CDS 30.0%
ACTAATGTTGAGTTTCAACT+TGG + chr7.2:74930799-74930818 MS.gene032565:CDS 30.0%
GTTACAAATGGAAATTGTGT+TGG - chr7.2:74930694-74930713 None:intergenic 30.0%
GTTGCAAATTACTCAAGAAA+GGG - chr7.2:74930942-74930961 None:intergenic 30.0%
TCGTTATGATTAGGTTTCAA+AGG - chr7.2:74930559-74930578 None:intergenic 30.0%
TGATGTAAAGAGGTTACAAA+TGG - chr7.2:74930706-74930725 None:intergenic 30.0%
TTGCCAAAAAATCTCTTGAA+TGG + chr7.2:74931120-74931139 MS.gene032565:CDS 30.0%
! AGCCACAAAGAAATTTGTTT+CGG + chr7.2:74931004-74931023 MS.gene032565:CDS 30.0%
! AGTAATTTGCAACCACAAAT+TGG + chr7.2:74930949-74930968 MS.gene032565:CDS 30.0%
! CAATTTGGTGGAGAAAATAA+TGG + chr7.2:74930979-74930998 MS.gene032565:CDS 30.0%
! GACAATAGTTATGTTTCTGA+GGG + chr7.2:74930733-74930752 MS.gene032565:CDS 30.0%
!! TCTTCAATTGGTAATGGTAA+TGG + chr7.2:74930829-74930848 MS.gene032565:CDS 30.0%
!!! GAACCATTCAAGAGATTTTT+TGG - chr7.2:74931126-74931145 None:intergenic 30.0%
!!! GATCTATTTTGGAATGGAAA+TGG + chr7.2:74931159-74931178 MS.gene032565:CDS 30.0%
!!! TTTTGGAATGGAAATGGAAA+TGG + chr7.2:74931165-74931184 MS.gene032565:CDS 30.0%
AATGGAAATGGAAATGGAAG+TGG + chr7.2:74931171-74931190 MS.gene032565:CDS 35.0%
AGTGGTTCTTCAATTGGTAA+TGG + chr7.2:74930823-74930842 MS.gene032565:CDS 35.0%
GACCGAAACAAATTTCTTTG+TGG - chr7.2:74931009-74931028 None:intergenic 35.0%
GGAAATTGTGTTGGAAAATG+AGG - chr7.2:74930685-74930704 None:intergenic 35.0%
GGTTGCAAATTACTCAAGAA+AGG - chr7.2:74930943-74930962 None:intergenic 35.0%
GTGGAAGAAAACAATCATCA+AGG + chr7.2:74931090-74931109 MS.gene032565:CDS 35.0%
TAATCATAACGATCATCTCC+AGG + chr7.2:74930567-74930586 MS.gene032565:CDS 35.0%
TGATGAACTTGTAGCGAATT+CGG - chr7.2:74930901-74930920 None:intergenic 35.0%
TGGAGATGATCGTTATGATT+AGG - chr7.2:74930568-74930587 None:intergenic 35.0%
TTGTTGATACCAAATGGCAT+TGG + chr7.2:74930859-74930878 MS.gene032565:CDS 35.0%
! AAGAAATTTGTTTCGGTCGA+AGG + chr7.2:74931011-74931030 MS.gene032565:CDS 35.0%
! CGACAATAGTTATGTTTCTG+AGG + chr7.2:74930732-74930751 MS.gene032565:CDS 35.0%
! GAAGTGGTAATGAAAATGCA+TGG + chr7.2:74931187-74931206 MS.gene032565:CDS 35.0%
! GACGACAAGTTTTGCAAAAA+TGG - chr7.2:74930438-74930457 None:intergenic 35.0%
!! GTGTTTGTTGATTCACATCT+TGG - chr7.2:74930373-74930392 None:intergenic 35.0%
!! TCAATTGGTAATGGTAATGG+TGG + chr7.2:74930832-74930851 MS.gene032565:CDS 35.0%
CAAGGTGGTGAAATGAAACT+AGG - chr7.2:74931222-74931241 None:intergenic 40.0%
CATTGTTCACCAATGCCATT+TGG - chr7.2:74930871-74930890 None:intergenic 40.0%
CTTTGACATCTTAGCTCGAT+CGG - chr7.2:74930314-74930333 None:intergenic 40.0%
GCAAAACTTGTCGTCGTTAT+TGG + chr7.2:74930443-74930462 MS.gene032565:CDS 40.0%
GGCTCTTTGTTGATACCAAA+TGG + chr7.2:74930853-74930872 MS.gene032565:CDS 40.0%
GTTGAGTTTCAACTTGGTAG+TGG + chr7.2:74930805-74930824 MS.gene032565:CDS 40.0%
TAGATTTGAGGATCACAAGG+TGG - chr7.2:74931237-74931256 None:intergenic 40.0%
! AGTTATGTTTCTGAGGGCAT+TGG + chr7.2:74930739-74930758 MS.gene032565:CDS 40.0%
! CAAGTTTTGCAAAAATGGCG+TGG - chr7.2:74930433-74930452 None:intergenic 40.0%
! GTCGCTATGATGATGTAAAG+AGG - chr7.2:74930716-74930735 None:intergenic 40.0%
!! CAAATGGCATTGGTGAACAA+TGG + chr7.2:74930869-74930888 MS.gene032565:CDS 40.0%
!! CTTGGTAGTGGTTCTTCAAT+TGG + chr7.2:74930817-74930836 MS.gene032565:CDS 40.0%
CATAACGATCATCTCCAGGT+CGG + chr7.2:74930571-74930590 MS.gene032565:CDS 45.0%
! TGTCGTCGTTATTGGACTAG+AGG + chr7.2:74930451-74930470 MS.gene032565:CDS 45.0%
!! ATACTGGTCTTCTAGACCCT+TGG - chr7.2:74930285-74930304 None:intergenic 45.0%
!! ATGGCATTGGTGAACAATGG+AGG + chr7.2:74930872-74930891 MS.gene032565:CDS 45.0%
!! TGAGGGCATTGGTTCTTTGT+TGG + chr7.2:74930750-74930769 MS.gene032565:CDS 45.0%
AAGCTGATGGCAGCTACCAA+GGG + chr7.2:74930266-74930285 MS.gene032565:CDS 50.0%
CTGTTGGAGGTGGTTGTAGA+AGG + chr7.2:74930494-74930513 MS.gene032565:CDS 50.0%
CTTCGAAACGTTCCTGTTGG+AGG + chr7.2:74930481-74930500 MS.gene032565:CDS 50.0%
CTTCTACAACCACCTCCAAC+AGG - chr7.2:74930496-74930515 None:intergenic 50.0%
GCACTTCGAAACGTTCCTGT+TGG + chr7.2:74930478-74930497 MS.gene032565:CDS 50.0%
GCTCGATCGGTCATTGATAC+TGG - chr7.2:74930301-74930320 None:intergenic 50.0%
GTAGCTGCCATCAGCTTCAA+CGG - chr7.2:74930263-74930282 None:intergenic 50.0%
TCTGTCACCGTTGAAGCTGA+TGG + chr7.2:74930253-74930272 MS.gene032565:CDS 50.0%
! CGTCGTTATTGGACTAGAGG+TGG + chr7.2:74930454-74930473 MS.gene032565:CDS 50.0%
!! TGGTGGTTCTAGCTCAGCAA+GGG + chr7.2:74930606-74930625 MS.gene032565:CDS 50.0%
CGAAACGTTCCTGTTGGAGG+TGG + chr7.2:74930484-74930503 MS.gene032565:CDS 55.0%
GAAGCTGATGGCAGCTACCA+AGG + chr7.2:74930265-74930284 MS.gene032565:CDS 55.0%
! GTGCTGCTGCAGCATCATTC+TGG - chr7.2:74930342-74930361 None:intergenic 55.0%
!! CTGGTGGTTCTAGCTCAGCA+AGG + chr7.2:74930605-74930624 MS.gene032565:CDS 55.0%
GATCATCTCCAGGTCGGTGC+CGG + chr7.2:74930577-74930596 MS.gene032565:CDS 60.0%
GCTAGAACCACCAGCAGCAC+CGG - chr7.2:74930599-74930618 None:intergenic 60.0%
!! CAGCAGCACCGGCACCGACC+TGG - chr7.2:74930588-74930607 None:intergenic 75.0%
!! CAGGTCGGTGCCGGTGCTGC+TGG + chr7.2:74930586-74930605 MS.gene032565:CDS 75.0%
!! GTCGGTGCCGGTGCTGCTGG+TGG + chr7.2:74930589-74930608 MS.gene032565:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 74930250 74931257 74930250 ID=MS.gene032565
chr7.2 mRNA 74930250 74931257 74930250 ID=MS.gene032565.t1;Parent=MS.gene032565
chr7.2 exon 74930250 74931257 74930250 ID=MS.gene032565.t1.exon1;Parent=MS.gene032565.t1
chr7.2 CDS 74930250 74931257 74930250 ID=cds.MS.gene032565.t1;Parent=MS.gene032565.t1
Gene Sequence

>MS.gene032565

ATGTCTGTCACCGTTGAAGCTGATGGCAGCTACCAAGGGTCTAGAAGACCAGTATCAATGACCGATCGAGCTAAGATGTCAAAGATACACCAGAATGATGCTGCAGCAGCACAGAAATGTCCAAGATGTGAATCAACAAACACAAAGTTCTGTTACTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGTGGTGCACTTCGAAACGTTCCTGTTGGAGGTGGTTGTAGAAGGAACAACAAAAGAAGAAAAAGTAATTCAGCATCAAAATCACCTTTGAAACCTAATCATAACGATCATCTCCAGGTCGGTGCCGGTGCTGCTGGTGGTTCTAGCTCAGCAAGGGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTTGGAATGCCTCATTTTCCAACACAATTTCCATTTGTAACCTCTTTACATCATCATAGCGACAATAGTTATGTTTCTGAGGGCATTGGTTCTTTGTTGGCCAAAAATATGAGCAATAGTACTACAACTAATGTTGAGTTTCAACTTGGTAGTGGTTCTTCAATTGGTAATGGTAATGGTGGCTCTTTGTTGATACCAAATGGCATTGGTGAACAATGGAGGTTTCCGAATTCGCTACAAGTTCATCAACAACAATATCAACAATTCCCTTTCTTGAGTAATTTGCAACCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGGAGAGCCACAAAGAAATTTGTTTCGGTCGAAGGAAACATATTCTTCAAGTGTTAGTATTGGAATGATGCCTCAAGTTAATACAGTTAAAGTGGAAGAAAACAATCATCAAGGTTTGAGTTTGCCAAAAAATCTCTTGAATGGTTCAGGAAATAGTAATGATCTATTTTGGAATGGAAATGGAAATGGAAGTGGTAATGAAAATGCATGGAATGAAGTTCCTAGTTTCATTTCACCACCTTGTGATCCTCAAATCTAG
Protein sequence

>MS.gene032565.t1

MSVTVEADGSYQGSRRPVSMTDRAKMSKIHQNDAAAAQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRRKSNSASKSPLKPNHNDHLQVGAGAAGGSSSARANSSSNNGCTNSNVNVGMPHFPTQFPFVTSLHHHSDNSYVSEGIGSLLAKNMSNSTTTNVEFQLGSGSSIGNGNGGSLLIPNGIGEQWRFPNSLQVHQQQYQQFPFLSNLQPQIGLFQFGGENNGEPQRNLFRSKETYSSSVSIGMMPQVNTVKVEENNHQGLSLPKNLLNGSGNSNDLFWNGNGNGSGNENAWNEVPSFISPPCDPQI