Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032588.t1 | RHN49743.1 | 85.7 | 356 | 41 | 3 | 1 | 355 | 9 | 355 | 2.70E-153 | 551.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032588.t1 | Q9FIM0 | 34.8 | 141 | 89 | 2 | 6 | 145 | 6 | 144 | 6.1e-13 | 76.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032588.t1 | G7KHI3 | 85.7 | 356 | 41 | 3 | 1 | 355 | 1 | 347 | 1.9e-153 | 551.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene032588.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032588.t1 | MTR_6g005450 | 85.393 | 356 | 42 | 3 | 1 | 355 | 1 | 347 | 0.0 | 610 |
MS.gene032588.t1 | MTR_6g018920 | 67.688 | 359 | 99 | 4 | 1 | 355 | 1 | 346 | 1.41e-170 | 479 |
MS.gene032588.t1 | MTR_6g005440 | 62.921 | 356 | 90 | 6 | 1 | 355 | 1 | 315 | 2.16e-152 | 431 |
MS.gene032588.t1 | MTR_1g114730 | 61.983 | 363 | 114 | 6 | 1 | 355 | 1 | 347 | 8.93e-143 | 408 |
MS.gene032588.t1 | MTR_4g107170 | 36.842 | 171 | 100 | 2 | 1 | 171 | 1 | 163 | 2.36e-30 | 116 |
MS.gene032588.t1 | MTR_2g049610 | 34.742 | 213 | 115 | 4 | 1 | 213 | 1 | 189 | 2.72e-29 | 113 |
MS.gene032588.t1 | MTR_2g049530 | 36.364 | 154 | 93 | 2 | 3 | 155 | 5 | 154 | 5.16e-27 | 105 |
MS.gene032588.t1 | MTR_4g045977 | 35.032 | 157 | 99 | 1 | 1 | 157 | 1 | 154 | 3.91e-26 | 108 |
MS.gene032588.t1 | MTR_2g049630 | 34.286 | 175 | 110 | 2 | 2 | 175 | 4 | 174 | 1.20e-24 | 103 |
MS.gene032588.t1 | MTR_1g115290 | 31.387 | 137 | 93 | 1 | 43 | 179 | 7 | 142 | 1.54e-20 | 87.4 |
MS.gene032588.t1 | MTR_0061s0010 | 60.345 | 58 | 20 | 1 | 29 | 86 | 1 | 55 | 1.84e-18 | 81.3 |
MS.gene032588.t1 | MTR_3g466890 | 34.146 | 164 | 92 | 6 | 3 | 157 | 2 | 158 | 1.29e-14 | 71.2 |
MS.gene032588.t1 | MTR_3g031240 | 30.952 | 126 | 80 | 3 | 1 | 125 | 1 | 120 | 2.61e-14 | 70.9 |
MS.gene032588.t1 | MTR_1g090710 | 34.426 | 122 | 71 | 4 | 1 | 122 | 1 | 113 | 2.74e-14 | 70.1 |
MS.gene032588.t1 | MTR_3g466980 | 24.681 | 235 | 144 | 10 | 1 | 216 | 1 | 221 | 2.24e-13 | 68.9 |
MS.gene032588.t1 | MTR_5g075380 | 30.303 | 165 | 101 | 5 | 1 | 157 | 1 | 159 | 2.30e-13 | 67.8 |
MS.gene032588.t1 | MTR_5g047580 | 30.469 | 128 | 76 | 3 | 1 | 128 | 1 | 115 | 2.95e-13 | 67.4 |
MS.gene032588.t1 | MTR_3g466830 | 33.636 | 110 | 66 | 3 | 3 | 111 | 2 | 105 | 4.18e-13 | 67.0 |
MS.gene032588.t1 | MTR_4g032620 | 38.136 | 118 | 58 | 5 | 1 | 117 | 1 | 104 | 4.72e-13 | 68.2 |
MS.gene032588.t1 | MTR_2g016210 | 34.545 | 110 | 60 | 5 | 2 | 108 | 3 | 103 | 4.61e-12 | 65.5 |
MS.gene032588.t1 | MTR_8g036130 | 33.962 | 106 | 61 | 4 | 1 | 103 | 1 | 100 | 5.03e-12 | 65.5 |
MS.gene032588.t1 | MTR_4g063790 | 29.375 | 160 | 98 | 4 | 1 | 151 | 1 | 154 | 5.51e-12 | 63.9 |
MS.gene032588.t1 | MTR_1g090697 | 28.994 | 169 | 93 | 5 | 1 | 155 | 1 | 156 | 5.69e-12 | 63.5 |
MS.gene032588.t1 | MTR_3g065100 | 26.531 | 245 | 143 | 8 | 1 | 216 | 1 | 237 | 8.59e-12 | 64.7 |
MS.gene032588.t1 | MTR_3g031100 | 28.571 | 126 | 83 | 3 | 1 | 125 | 1 | 120 | 1.32e-11 | 64.3 |
MS.gene032588.t1 | MTR_8g086290 | 27.632 | 152 | 80 | 5 | 2 | 136 | 12 | 150 | 7.03e-11 | 60.8 |
MS.gene032588.t1 | MTR_1g090783 | 40.000 | 80 | 42 | 3 | 3 | 82 | 2 | 75 | 7.76e-11 | 60.5 |
MS.gene032588.t1 | MTR_1g077390 | 31.250 | 112 | 71 | 3 | 1 | 112 | 1 | 106 | 8.97e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032588.t1 | AT5G55690 | 32.210 | 267 | 134 | 10 | 1 | 258 | 1 | 229 | 3.48e-25 | 103 |
MS.gene032588.t1 | AT5G55690 | 32.210 | 267 | 134 | 10 | 1 | 258 | 1 | 229 | 3.48e-25 | 103 |
MS.gene032588.t1 | AT5G58890 | 35.211 | 142 | 87 | 3 | 6 | 145 | 6 | 144 | 8.58e-18 | 83.2 |
MS.gene032588.t1 | AT1G22590 | 30.435 | 161 | 101 | 4 | 1 | 156 | 1 | 155 | 1.07e-14 | 71.6 |
MS.gene032588.t1 | AT3G18650 | 36.296 | 135 | 72 | 5 | 16 | 144 | 31 | 157 | 8.95e-14 | 72.4 |
MS.gene032588.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 1.92e-12 | 67.0 |
MS.gene032588.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 2.10e-12 | 65.9 |
MS.gene032588.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 2.72e-12 | 66.6 |
MS.gene032588.t1 | AT1G65330 | 25.170 | 294 | 162 | 12 | 3 | 290 | 2 | 243 | 3.00e-12 | 66.6 |
MS.gene032588.t1 | AT2G28700 | 24.468 | 188 | 128 | 5 | 1 | 185 | 1 | 177 | 1.12e-11 | 65.5 |
MS.gene032588.t1 | AT1G31640 | 25.000 | 160 | 105 | 5 | 3 | 154 | 2 | 154 | 2.01e-11 | 65.5 |
MS.gene032588.t1 | AT5G27960 | 27.097 | 155 | 106 | 3 | 5 | 158 | 3 | 151 | 6.44e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTCCTAGATTTCTCTTT+TGG | 0.200818 | 6.3:-1555587 | None:intergenic |
GTGTCTTTAGGCCATGTTTC+AGG | 0.215568 | 6.3:-1555731 | None:intergenic |
TCCCATGAACATCTACTTAA+TGG | 0.218158 | 6.3:+1556538 | MS.gene032588:CDS |
GTATTTCCATTGTAATAGTA+TGG | 0.279464 | 6.3:-1556448 | None:intergenic |
CTTCTACCATGAAGAGTCTA+AGG | 0.328249 | 6.3:+1556291 | MS.gene032588:CDS |
CTCTATGCTCCCACCTTTGA+AGG | 0.335130 | 6.3:+1555692 | MS.gene032588:CDS |
AATATGCTAGAAGGAGATCT+TGG | 0.345774 | 6.3:+1556007 | MS.gene032588:CDS |
GTAGATGTTCATGGGATGAT+AGG | 0.352051 | 6.3:-1556531 | None:intergenic |
GATGAATCTTTCAATTCTCT+TGG | 0.359377 | 6.3:+1555917 | MS.gene032588:CDS |
AAAATATTCTTGAACATCAT+AGG | 0.366937 | 6.3:-1555816 | None:intergenic |
TTGAAGAGTATTTGTATCAT+AGG | 0.374631 | 6.3:-1556563 | None:intergenic |
GAGGTTATTTGCTAGGATCT+TGG | 0.377459 | 6.3:+1555952 | MS.gene032588:CDS |
TACCTGCCTTAGACTCTTCA+TGG | 0.403438 | 6.3:-1556297 | None:intergenic |
TCATTCCAAAAGAGAAATCT+AGG | 0.418504 | 6.3:+1555582 | MS.gene032588:CDS |
GTATTGCAAAAGAGAAAGAT+TGG | 0.420157 | 6.3:+1555611 | MS.gene032588:CDS |
CTAAAGATGAATATGCTAGA+AGG | 0.421397 | 6.3:+1555998 | MS.gene032588:CDS |
CTTGGATTTGAGTCTAAGTA+AGG | 0.422502 | 6.3:-1556082 | None:intergenic |
AAACTTCTCTTTGCGCACTT+TGG | 0.438281 | 6.3:-1555873 | None:intergenic |
GCCACCAATGATCTCAAAAT+CGG | 0.446186 | 6.3:+1556385 | MS.gene032588:CDS |
AGCATCAACATCACAAAGAA+TGG | 0.454348 | 6.3:-1555660 | None:intergenic |
ATATGCTAGAAGGAGATCTT+GGG | 0.456719 | 6.3:+1556008 | MS.gene032588:CDS |
ATCCATTAAGTAGATGTTCA+TGG | 0.457427 | 6.3:-1556540 | None:intergenic |
ACTATAACACAACAGTTGAT+AGG | 0.461207 | 6.3:+1555783 | MS.gene032588:CDS |
TTTCAGGTTCAGCATACCCT+TGG | 0.467005 | 6.3:-1555715 | None:intergenic |
TTAAGATGAAGTATCAAACT+TGG | 0.470449 | 6.3:+1555894 | MS.gene032588:CDS |
AGCTCAAATGTTCAACTACA+TGG | 0.476126 | 6.3:+1556585 | MS.gene032588:CDS |
AACAATTGAGGTTATTTGCT+AGG | 0.476502 | 6.3:+1555945 | MS.gene032588:CDS |
AAGCTCTCAACCTTCTCCTA+TGG | 0.477911 | 6.3:+1556252 | MS.gene032588:CDS |
TTAAAATCAATCTGCTTGCA+AGG | 0.480005 | 6.3:-1556337 | None:intergenic |
AAGCTCTCAACCCTCTCATA+TGG | 0.482453 | 6.3:+1556216 | MS.gene032588:CDS |
TAAGTGGCCAAAACCCTAAA+GGG | 0.486281 | 6.3:-1556183 | None:intergenic |
TTATCACTAATATTCATCAA+TGG | 0.491553 | 6.3:-1556157 | None:intergenic |
ACGAGATTGAAGTAGCTACT+TGG | 0.492060 | 6.3:-1556100 | None:intergenic |
CTCTTGGAGATGAACAATTG+AGG | 0.499688 | 6.3:+1555933 | MS.gene032588:CDS |
ATGGTAGAAGCTCTGTGCTC+GGG | 0.509126 | 6.3:-1556278 | None:intergenic |
AGCATACCCTTGGCCTTCAA+AGG | 0.510389 | 6.3:-1555705 | None:intergenic |
GAGCTTTGACCCGATATAAG+TGG | 0.512541 | 6.3:-1556199 | None:intergenic |
ATAAGTGGCCAAAACCCTAA+AGG | 0.517760 | 6.3:-1556184 | None:intergenic |
GCTCCCACCTTTGAAGGCCA+AGG | 0.521825 | 6.3:+1555698 | MS.gene032588:CDS |
TGGCATTAGCATCAACATGA+TGG | 0.525287 | 6.3:-1556366 | None:intergenic |
CATGGTAGAAGCTCTGTGCT+CGG | 0.528284 | 6.3:-1556279 | None:intergenic |
TTAGCACCATACTATTACAA+TGG | 0.536934 | 6.3:+1556442 | MS.gene032588:CDS |
TGTTCGCAGCAAATGGGTCG+TGG | 0.537698 | 6.3:+1555542 | None:intergenic |
GGAAGAGTAGGCATAGCAAT+GGG | 0.540404 | 6.3:-1556490 | None:intergenic |
CAAATGTTCAACTACATGGA+TGG | 0.546493 | 6.3:+1556589 | MS.gene032588:CDS |
CTCTGTGCTCGGGAAACCAT+AGG | 0.549200 | 6.3:-1556268 | None:intergenic |
TCCATTAAGTAGATGTTCAT+GGG | 0.551523 | 6.3:-1556539 | None:intergenic |
TACCATGAAGAGTCTAAGGC+AGG | 0.558047 | 6.3:+1556295 | MS.gene032588:CDS |
TAAGATGAAGTATCAAACTT+GGG | 0.559208 | 6.3:+1555895 | MS.gene032588:CDS |
TGCAGTTGAAACCATATGAG+AGG | 0.566645 | 6.3:-1556227 | None:intergenic |
TACCCTTGGCCTTCAAAGGT+GGG | 0.569378 | 6.3:-1555701 | None:intergenic |
ATACCCTTGGCCTTCAAAGG+TGG | 0.570213 | 6.3:-1555702 | None:intergenic |
GGCATTAGCATCAACATGAT+GGG | 0.570214 | 6.3:-1556365 | None:intergenic |
TGTTCAACTACATGGATGGA+AGG | 0.573547 | 6.3:+1556593 | MS.gene032588:CDS |
TCACTAATATTCATCAATGG+AGG | 0.597003 | 6.3:-1556154 | None:intergenic |
TAAAATCAATCTGCTTGCAA+GGG | 0.599195 | 6.3:-1556336 | None:intergenic |
CTCCCACCTTTGAAGGCCAA+GGG | 0.600336 | 6.3:+1555699 | MS.gene032588:CDS |
AGGTGCAAAGAATTCTTCAA+AGG | 0.603453 | 6.3:+1555759 | MS.gene032588:CDS |
TATGCTAGAAGGAGATCTTG+GGG | 0.613088 | 6.3:+1556009 | MS.gene032588:CDS |
AGGAAGAGTAGGCATAGCAA+TGG | 0.623758 | 6.3:-1556491 | None:intergenic |
GCTCGGGAAACCATAGGAGA+AGG | 0.625390 | 6.3:-1556262 | None:intergenic |
GGGTCGTGGAAGAGTATCTG+TGG | 0.635324 | 6.3:+1555556 | MS.gene032588:CDS |
ATGGCCTAAAGACACAAAAG+AGG | 0.635374 | 6.3:+1555739 | MS.gene032588:CDS |
GGTATGCTGAACCTGAAACA+TGG | 0.639942 | 6.3:+1555720 | MS.gene032588:CDS |
GCAGTTGAAACCATATGAGA+GGG | 0.704855 | 6.3:-1556226 | None:intergenic |
ATGCTAGAAGGAGATCTTGG+GGG | 0.718359 | 6.3:+1556010 | MS.gene032588:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6.3:1555819-1555838 | None:intergenic | 20.0% |
!! | TTATCACTAATATTCATCAA+TGG | - | chr6.3:1556160-1556179 | None:intergenic | 20.0% |
!!! | TTCAAGAATATTTTAACGAA+AGG | + | chr6.3:1555825-1555844 | MS.gene032588:CDS | 20.0% |
! | ATTAGTGATAAAAACCCTTT+AGG | + | chr6.3:1556169-1556188 | MS.gene032588:CDS | 25.0% |
! | GTATTTCCATTGTAATAGTA+TGG | - | chr6.3:1556451-1556470 | None:intergenic | 25.0% |
! | TTAGTGATAAAAACCCTTTA+GGG | + | chr6.3:1556170-1556189 | MS.gene032588:CDS | 25.0% |
!! | TAAGATGAAGTATCAAACTT+GGG | + | chr6.3:1555895-1555914 | MS.gene032588:CDS | 25.0% |
!! | TTAAGATGAAGTATCAAACT+TGG | + | chr6.3:1555894-1555913 | MS.gene032588:CDS | 25.0% |
!!! | AGGTTTGAAAGATTTTGAAA+AGG | - | chr6.3:1556514-1556533 | None:intergenic | 25.0% |
!!! | TTGAAGAGTATTTGTATCAT+AGG | - | chr6.3:1556566-1556585 | None:intergenic | 25.0% |
AACAATTGAGGTTATTTGCT+AGG | + | chr6.3:1555945-1555964 | MS.gene032588:CDS | 30.0% | |
ACTATAACACAACAGTTGAT+AGG | + | chr6.3:1555783-1555802 | MS.gene032588:CDS | 30.0% | |
ATCCATTAAGTAGATGTTCA+TGG | - | chr6.3:1556543-1556562 | None:intergenic | 30.0% | |
CTAAAGATGAATATGCTAGA+AGG | + | chr6.3:1555998-1556017 | MS.gene032588:CDS | 30.0% | |
GATGAATCTTTCAATTCTCT+TGG | + | chr6.3:1555917-1555936 | MS.gene032588:CDS | 30.0% | |
GTATTGCAAAAGAGAAAGAT+TGG | + | chr6.3:1555611-1555630 | MS.gene032588:CDS | 30.0% | |
TAAAATCAATCTGCTTGCAA+GGG | - | chr6.3:1556339-1556358 | None:intergenic | 30.0% | |
TCACTAATATTCATCAATGG+AGG | - | chr6.3:1556157-1556176 | None:intergenic | 30.0% | |
TCATTCCAAAAGAGAAATCT+AGG | + | chr6.3:1555582-1555601 | MS.gene032588:CDS | 30.0% | |
TCCATTAAGTAGATGTTCAT+GGG | - | chr6.3:1556542-1556561 | None:intergenic | 30.0% | |
TGGTTTGATGAAAAAAGTTG+AGG | + | chr6.3:1555631-1555650 | MS.gene032588:CDS | 30.0% | |
TTAAAATCAATCTGCTTGCA+AGG | - | chr6.3:1556340-1556359 | None:intergenic | 30.0% | |
TTAGCACCATACTATTACAA+TGG | + | chr6.3:1556442-1556461 | MS.gene032588:CDS | 30.0% | |
! | ATCTTCCTAGATTTCTCTTT+TGG | - | chr6.3:1555590-1555609 | None:intergenic | 30.0% |
!! | AGATTTTGAAAAGGAAGAGT+AGG | - | chr6.3:1556505-1556524 | None:intergenic | 30.0% |
!! | GCAAGCAGATTGATTTTAAT+TGG | + | chr6.3:1556341-1556360 | MS.gene032588:CDS | 30.0% |
!!! | ATAAAAACCCTTTAGGGTTT+TGG | + | chr6.3:1556176-1556195 | MS.gene032588:CDS | 30.0% |
AATATGCTAGAAGGAGATCT+TGG | + | chr6.3:1556007-1556026 | MS.gene032588:CDS | 35.0% | |
AGCATCAACATCACAAAGAA+TGG | - | chr6.3:1555663-1555682 | None:intergenic | 35.0% | |
AGCTCAAATGTTCAACTACA+TGG | + | chr6.3:1556585-1556604 | MS.gene032588:CDS | 35.0% | |
AGGTGCAAAGAATTCTTCAA+AGG | + | chr6.3:1555759-1555778 | MS.gene032588:CDS | 35.0% | |
ATATGCTAGAAGGAGATCTT+GGG | + | chr6.3:1556008-1556027 | MS.gene032588:CDS | 35.0% | |
CAAATGTTCAACTACATGGA+TGG | + | chr6.3:1556589-1556608 | MS.gene032588:CDS | 35.0% | |
CTTGGATTTGAGTCTAAGTA+AGG | - | chr6.3:1556085-1556104 | None:intergenic | 35.0% | |
TCCCATGAACATCTACTTAA+TGG | + | chr6.3:1556538-1556557 | MS.gene032588:CDS | 35.0% | |
!!! | CATACCGATTTTGAGATCAT+TGG | - | chr6.3:1556392-1556411 | None:intergenic | 35.0% |
AAACTTCTCTTTGCGCACTT+TGG | - | chr6.3:1555876-1555895 | None:intergenic | 40.0% | |
ACGAGATTGAAGTAGCTACT+TGG | - | chr6.3:1556103-1556122 | None:intergenic | 40.0% | |
ATAAGTGGCCAAAACCCTAA+AGG | - | chr6.3:1556187-1556206 | None:intergenic | 40.0% | |
ATGGCCTAAAGACACAAAAG+AGG | + | chr6.3:1555739-1555758 | MS.gene032588:CDS | 40.0% | |
CTCTTGGAGATGAACAATTG+AGG | + | chr6.3:1555933-1555952 | MS.gene032588:CDS | 40.0% | |
CTTCTACCATGAAGAGTCTA+AGG | + | chr6.3:1556291-1556310 | MS.gene032588:CDS | 40.0% | |
GCAGTTGAAACCATATGAGA+GGG | - | chr6.3:1556229-1556248 | None:intergenic | 40.0% | |
GCCACCAATGATCTCAAAAT+CGG | + | chr6.3:1556385-1556404 | MS.gene032588:CDS | 40.0% | |
GGCATTAGCATCAACATGAT+GGG | - | chr6.3:1556368-1556387 | None:intergenic | 40.0% | |
GTAGATGTTCATGGGATGAT+AGG | - | chr6.3:1556534-1556553 | None:intergenic | 40.0% | |
TAAGTGGCCAAAACCCTAAA+GGG | - | chr6.3:1556186-1556205 | None:intergenic | 40.0% | |
TATGCTAGAAGGAGATCTTG+GGG | + | chr6.3:1556009-1556028 | MS.gene032588:CDS | 40.0% | |
TGCAGTTGAAACCATATGAG+AGG | - | chr6.3:1556230-1556249 | None:intergenic | 40.0% | |
TGGCATTAGCATCAACATGA+TGG | - | chr6.3:1556369-1556388 | None:intergenic | 40.0% | |
TGTTCAACTACATGGATGGA+AGG | + | chr6.3:1556593-1556612 | MS.gene032588:CDS | 40.0% | |
! | GAGGTTATTTGCTAGGATCT+TGG | + | chr6.3:1555952-1555971 | MS.gene032588:CDS | 40.0% |
! | TGCACCTCTTTTGTGTCTTT+AGG | - | chr6.3:1555746-1555765 | None:intergenic | 40.0% |
!! | AGGGTTTTGGCCACTTATAT+CGG | + | chr6.3:1556189-1556208 | MS.gene032588:CDS | 40.0% |
!!! | ACCGATTTTGAGATCATTGG+TGG | - | chr6.3:1556389-1556408 | None:intergenic | 40.0% |
AAGCTCTCAACCCTCTCATA+TGG | + | chr6.3:1556216-1556235 | MS.gene032588:CDS | 45.0% | |
AAGCTCTCAACCTTCTCCTA+TGG | + | chr6.3:1556252-1556271 | MS.gene032588:CDS | 45.0% | |
AGGAAGAGTAGGCATAGCAA+TGG | - | chr6.3:1556494-1556513 | None:intergenic | 45.0% | |
ATGCTAGAAGGAGATCTTGG+GGG | + | chr6.3:1556010-1556029 | MS.gene032588:CDS | 45.0% | |
GGAAGAGTAGGCATAGCAAT+GGG | - | chr6.3:1556493-1556512 | None:intergenic | 45.0% | |
GGTATGCTGAACCTGAAACA+TGG | + | chr6.3:1555720-1555739 | MS.gene032588:CDS | 45.0% | |
GTGTCTTTAGGCCATGTTTC+AGG | - | chr6.3:1555734-1555753 | None:intergenic | 45.0% | |
TACCTGCCTTAGACTCTTCA+TGG | - | chr6.3:1556300-1556319 | None:intergenic | 45.0% | |
! | GAGCTTTGACCCGATATAAG+TGG | - | chr6.3:1556202-1556221 | None:intergenic | 45.0% |
! | TACCATGAAGAGTCTAAGGC+AGG | + | chr6.3:1556295-1556314 | MS.gene032588:CDS | 45.0% |
!! | GGGTTTTGGCCACTTATATC+GGG | + | chr6.3:1556190-1556209 | MS.gene032588:CDS | 45.0% |
!! | TTTCAGGTTCAGCATACCCT+TGG | - | chr6.3:1555718-1555737 | None:intergenic | 45.0% |
ATGGTAGAAGCTCTGTGCTC+GGG | - | chr6.3:1556281-1556300 | None:intergenic | 50.0% | |
CATGGTAGAAGCTCTGTGCT+CGG | - | chr6.3:1556282-1556301 | None:intergenic | 50.0% | |
CTCTATGCTCCCACCTTTGA+AGG | + | chr6.3:1555692-1555711 | MS.gene032588:CDS | 50.0% | |
! | AGCATACCCTTGGCCTTCAA+AGG | - | chr6.3:1555708-1555727 | None:intergenic | 50.0% |
! | ATACCCTTGGCCTTCAAAGG+TGG | - | chr6.3:1555705-1555724 | None:intergenic | 50.0% |
! | TACCCTTGGCCTTCAAAGGT+GGG | - | chr6.3:1555704-1555723 | None:intergenic | 50.0% |
CTCTGTGCTCGGGAAACCAT+AGG | - | chr6.3:1556271-1556290 | None:intergenic | 55.0% | |
GCTCGGGAAACCATAGGAGA+AGG | - | chr6.3:1556265-1556284 | None:intergenic | 55.0% | |
! | CTCCCACCTTTGAAGGCCAA+GGG | + | chr6.3:1555699-1555718 | MS.gene032588:CDS | 55.0% |
!! | GGGTCGTGGAAGAGTATCTG+TGG | + | chr6.3:1555556-1555575 | MS.gene032588:CDS | 55.0% |
! | GCTCCCACCTTTGAAGGCCA+AGG | + | chr6.3:1555698-1555717 | MS.gene032588:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 1555554 | 1556621 | 1555554 | ID=MS.gene032588 |
chr6.3 | mRNA | 1555554 | 1556621 | 1555554 | ID=MS.gene032588.t1;Parent=MS.gene032588 |
chr6.3 | exon | 1555554 | 1556621 | 1555554 | ID=MS.gene032588.t1.exon1;Parent=MS.gene032588.t1 |
chr6.3 | CDS | 1555554 | 1556621 | 1555554 | ID=cds.MS.gene032588.t1;Parent=MS.gene032588.t1 |
Gene Sequence |
Protein sequence |