Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032589.t1 | XP_003618176.1 | 89.2 | 323 | 26 | 2 | 1 | 322 | 1 | 315 | 2.80E-157 | 564.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032589.t1 | Q9FIM0 | 35.7 | 143 | 85 | 3 | 6 | 145 | 6 | 144 | 1.3e-14 | 82.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032589.t1 | G7KHI2 | 89.2 | 323 | 26 | 2 | 1 | 322 | 1 | 315 | 2.0e-157 | 564.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032589.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032589.t1 | MTR_6g005440 | 89.164 | 323 | 26 | 2 | 1 | 322 | 1 | 315 | 0.0 | 584 |
| MS.gene032589.t1 | MTR_6g018920 | 63.006 | 346 | 104 | 3 | 1 | 322 | 1 | 346 | 3.16e-152 | 431 |
| MS.gene032589.t1 | MTR_6g005450 | 62.931 | 348 | 102 | 4 | 1 | 322 | 1 | 347 | 5.83e-148 | 420 |
| MS.gene032589.t1 | MTR_1g114730 | 58.989 | 356 | 103 | 6 | 1 | 322 | 1 | 347 | 3.40e-134 | 385 |
| MS.gene032589.t1 | MTR_4g107170 | 41.026 | 156 | 89 | 1 | 1 | 156 | 1 | 153 | 9.51e-36 | 130 |
| MS.gene032589.t1 | MTR_4g045977 | 38.587 | 184 | 108 | 3 | 1 | 184 | 1 | 179 | 8.21e-35 | 130 |
| MS.gene032589.t1 | MTR_2g049610 | 40.491 | 163 | 91 | 2 | 1 | 163 | 1 | 157 | 8.04e-34 | 124 |
| MS.gene032589.t1 | MTR_2g049530 | 38.312 | 154 | 90 | 2 | 3 | 155 | 5 | 154 | 9.16e-30 | 112 |
| MS.gene032589.t1 | MTR_2g049630 | 34.921 | 189 | 105 | 4 | 2 | 177 | 4 | 187 | 1.16e-26 | 108 |
| MS.gene032589.t1 | MTR_1g115290 | 37.719 | 114 | 70 | 1 | 44 | 157 | 8 | 120 | 2.13e-21 | 89.4 |
| MS.gene032589.t1 | MTR_0061s0010 | 55.357 | 56 | 24 | 1 | 29 | 83 | 1 | 56 | 3.40e-16 | 74.7 |
| MS.gene032589.t1 | MTR_3g466980 | 26.667 | 165 | 107 | 5 | 1 | 157 | 1 | 159 | 4.15e-13 | 67.8 |
| MS.gene032589.t1 | MTR_3g102570 | 26.036 | 169 | 109 | 5 | 1 | 169 | 1 | 153 | 5.82e-13 | 68.9 |
| MS.gene032589.t1 | MTR_3g031240 | 27.950 | 161 | 101 | 5 | 1 | 152 | 1 | 155 | 6.44e-13 | 66.6 |
| MS.gene032589.t1 | MTR_3g088615 | 45.161 | 62 | 34 | 0 | 1 | 62 | 1 | 62 | 2.89e-12 | 64.7 |
| MS.gene032589.t1 | MTR_1g029670 | 31.293 | 147 | 83 | 5 | 1 | 144 | 1 | 132 | 1.43e-11 | 62.8 |
| MS.gene032589.t1 | MTR_3g466830 | 31.818 | 110 | 68 | 3 | 3 | 111 | 2 | 105 | 1.59e-11 | 62.0 |
| MS.gene032589.t1 | MTR_5g021270 | 31.159 | 138 | 83 | 4 | 1 | 136 | 1 | 128 | 1.72e-11 | 63.5 |
| MS.gene032589.t1 | MTR_8g086290 | 28.758 | 153 | 79 | 6 | 2 | 137 | 12 | 151 | 1.77e-11 | 62.4 |
| MS.gene032589.t1 | MTR_8g087860 | 28.025 | 157 | 100 | 4 | 1 | 157 | 17 | 160 | 1.78e-11 | 63.5 |
| MS.gene032589.t1 | MTR_5g021270 | 31.159 | 138 | 83 | 4 | 1 | 136 | 1 | 128 | 1.87e-11 | 63.5 |
| MS.gene032589.t1 | MTR_3g466890 | 31.944 | 144 | 80 | 6 | 3 | 142 | 2 | 131 | 5.79e-11 | 60.5 |
| MS.gene032589.t1 | MTR_4g108720 | 26.667 | 165 | 102 | 5 | 1 | 164 | 1 | 147 | 7.95e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032589.t1 | AT5G55690 | 40.000 | 145 | 79 | 2 | 1 | 144 | 1 | 138 | 2.16e-25 | 103 |
| MS.gene032589.t1 | AT5G55690 | 40.000 | 145 | 79 | 2 | 1 | 144 | 1 | 138 | 2.16e-25 | 103 |
| MS.gene032589.t1 | AT5G58890 | 35.664 | 143 | 85 | 3 | 6 | 145 | 6 | 144 | 6.16e-19 | 85.9 |
| MS.gene032589.t1 | AT3G18650 | 35.075 | 134 | 75 | 4 | 16 | 144 | 31 | 157 | 6.82e-17 | 80.9 |
| MS.gene032589.t1 | AT1G22590 | 30.128 | 156 | 98 | 3 | 1 | 151 | 1 | 150 | 6.31e-14 | 68.9 |
| MS.gene032589.t1 | AT2G22630 | 55.102 | 49 | 22 | 0 | 1 | 49 | 1 | 49 | 1.86e-12 | 66.2 |
| MS.gene032589.t1 | AT2G22630 | 55.102 | 49 | 22 | 0 | 1 | 49 | 1 | 49 | 1.86e-12 | 66.2 |
| MS.gene032589.t1 | AT3G57390 | 31.852 | 135 | 70 | 4 | 1 | 119 | 1 | 129 | 2.76e-12 | 65.9 |
| MS.gene032589.t1 | AT3G57390 | 32.593 | 135 | 69 | 4 | 1 | 119 | 1 | 129 | 3.85e-12 | 65.9 |
| MS.gene032589.t1 | AT3G05860 | 30.097 | 103 | 65 | 3 | 1 | 102 | 1 | 97 | 1.85e-11 | 63.2 |
| MS.gene032589.t1 | AT3G05860 | 30.097 | 103 | 65 | 3 | 1 | 102 | 1 | 97 | 2.09e-11 | 63.5 |
| MS.gene032589.t1 | AT5G26650 | 31.193 | 109 | 68 | 3 | 5 | 112 | 3 | 105 | 2.18e-11 | 64.7 |
| MS.gene032589.t1 | AT5G20240 | 45.000 | 60 | 33 | 0 | 1 | 60 | 1 | 60 | 2.56e-11 | 61.2 |
| MS.gene032589.t1 | AT3G05860 | 30.097 | 103 | 65 | 3 | 1 | 102 | 1 | 97 | 2.68e-11 | 63.5 |
| MS.gene032589.t1 | AT3G30260 | 48.000 | 50 | 26 | 0 | 1 | 50 | 1 | 50 | 5.30e-11 | 62.4 |
| MS.gene032589.t1 | AT4G37940 | 53.061 | 49 | 23 | 0 | 1 | 49 | 1 | 49 | 5.42e-11 | 61.2 |
| MS.gene032589.t1 | AT4G37940 | 53.061 | 49 | 23 | 0 | 1 | 49 | 1 | 49 | 6.13e-11 | 61.6 |
| MS.gene032589.t1 | AT4G37940 | 53.061 | 49 | 23 | 0 | 1 | 49 | 1 | 49 | 6.69e-11 | 61.6 |
| MS.gene032589.t1 | AT3G57230 | 48.000 | 50 | 26 | 0 | 1 | 50 | 1 | 50 | 6.82e-11 | 62.0 |
| MS.gene032589.t1 | AT3G57230 | 48.000 | 50 | 26 | 0 | 1 | 50 | 1 | 50 | 6.82e-11 | 62.0 |
| MS.gene032589.t1 | AT5G20240 | 49.020 | 51 | 26 | 0 | 1 | 51 | 1 | 51 | 8.67e-11 | 61.2 |
| MS.gene032589.t1 | AT4G11880 | 36.842 | 76 | 48 | 0 | 1 | 76 | 1 | 76 | 9.82e-11 | 60.5 |
| MS.gene032589.t1 | AT4G11880 | 36.842 | 76 | 48 | 0 | 1 | 76 | 1 | 76 | 9.82e-11 | 60.5 |
Find 62 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTCATACTGATTT+TGG | 0.072050 | 6.3:-1551863 | None:intergenic |
| TCCCATGAATATCTACTTTA+TGG | 0.106807 | 6.3:+1552003 | MS.gene032589:CDS |
| TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | 6.3:-1551295 | None:intergenic |
| GATGAATCTTACAATTCTTT+TGG | 0.252372 | 6.3:+1551481 | MS.gene032589:CDS |
| AACAATTGAGGTCATTTATT+AGG | 0.253713 | 6.3:+1551509 | MS.gene032589:CDS |
| TCTTGAACATCATAGGTCTT+AGG | 0.310978 | 6.3:-1551373 | None:intergenic |
| AATATGCTTGCAAGGGTAAT+AGG | 0.325548 | 6.3:-1551794 | None:intergenic |
| CCTTACATGACCTCAAATTC+AGG | 0.349045 | 6.3:+1551619 | MS.gene032589:CDS |
| CAACATATCCTTGGCCTTCA+AGG | 0.352632 | 6.3:-1551270 | None:intergenic |
| AAGCTCTCAACCTTCCCTTA+TGG | 0.354140 | 6.3:+1551753 | MS.gene032589:CDS |
| GAGCTTTGTTCCAATTGAAT+TGG | 0.369750 | 6.3:-1551736 | None:intergenic |
| GGGTCGTGGAAGAATATCTA+TGG | 0.373947 | 6.3:+1551120 | MS.gene032589:CDS |
| AAAATATTCTTGAACATCAT+AGG | 0.387170 | 6.3:-1551380 | None:intergenic |
| TCATGTAAGGAGAACTAATA+AGG | 0.392453 | 6.3:-1551606 | None:intergenic |
| GCAAGCATATTGATGCTAAC+TGG | 0.394885 | 6.3:+1551806 | MS.gene032589:CDS |
| GTAATAGGAGCTTTGTGAAC+TGG | 0.402630 | 6.3:-1551779 | None:intergenic |
| TTGAATACTATCTATATCAT+AGG | 0.410651 | 6.3:-1552028 | None:intergenic |
| TATCCTTGGCCTTCAAGGTT+GGG | 0.419769 | 6.3:-1551265 | None:intergenic |
| CTGTATGCTCCCAACCTTGA+AGG | 0.420817 | 6.3:+1551256 | MS.gene032589:CDS |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | 6.3:-1551224 | None:intergenic |
| AGGCTACTTCGTTCCATTCG+TGG | 0.443877 | 6.3:-1552067 | None:intergenic |
| ATCCATAAAGTAGATATTCA+TGG | 0.445056 | 6.3:-1552005 | None:intergenic |
| GAAGTAGTAGGCATAGCAAT+AGG | 0.447717 | 6.3:-1551958 | None:intergenic |
| ACTATGACACAACAATTGAT+AGG | 0.455411 | 6.3:+1551347 | MS.gene032589:CDS |
| ATCTATGGAACTCATTCAAA+AGG | 0.463531 | 6.3:+1551135 | MS.gene032589:CDS |
| TTATCACAAATATTCATCAA+TGG | 0.474002 | 6.3:-1551694 | None:intergenic |
| TTTCCATTGTAATAGTATGA+TGG | 0.479664 | 6.3:-1551913 | None:intergenic |
| CCTGAATTTGAGGTCATGTA+AGG | 0.483276 | 6.3:-1551619 | None:intergenic |
| AAAGTAGATATTCATGGGAT+AGG | 0.486977 | 6.3:-1551999 | None:intergenic |
| TTTCAGGTTCAACATATCCT+TGG | 0.488478 | 6.3:-1551279 | None:intergenic |
| TTTGTGAACTGGAAACCATA+AGG | 0.489071 | 6.3:-1551768 | None:intergenic |
| ATATCCTTGGCCTTCAAGGT+TGG | 0.502086 | 6.3:-1551266 | None:intergenic |
| GAAGTTGGTACCTGAATTTG+AGG | 0.503776 | 6.3:-1551629 | None:intergenic |
| TGATGCTAACTGGACCCATC+AGG | 0.505363 | 6.3:+1551816 | MS.gene032589:CDS |
| GATAACATTGCAAAAGAGAA+AGG | 0.505631 | 6.3:+1551171 | MS.gene032589:CDS |
| CAAAATCAGTATGAAGAAGA+AGG | 0.510960 | 6.3:+1551864 | MS.gene032589:CDS |
| TTGCCATCATACTATTACAA+TGG | 0.513046 | 6.3:+1551910 | MS.gene032589:CDS |
| TTGTGAACTGGAAACCATAA+GGG | 0.517232 | 6.3:-1551767 | None:intergenic |
| AGATTCTGAAAAGAAGTAGT+AGG | 0.518810 | 6.3:-1551970 | None:intergenic |
| AGTATGAAGAAGAAGGATGA+AGG | 0.528222 | 6.3:+1551871 | MS.gene032589:CDS |
| TAAAGATGATGTATCCAACT+TGG | 0.530838 | 6.3:+1551458 | MS.gene032589:CDS |
| CTTCAAGGTTGGGAGCATAC+AGG | 0.533279 | 6.3:-1551255 | None:intergenic |
| TAACATTAGCATTAACCTGA+TGG | 0.537085 | 6.3:-1551831 | None:intergenic |
| TCCATAAAGTAGATATTCAT+GGG | 0.546951 | 6.3:-1552004 | None:intergenic |
| TTAGCATCAATATGCTTGCA+AGG | 0.558529 | 6.3:-1551802 | None:intergenic |
| ATGCATACCAACATGTCTCA+AGG | 0.563493 | 6.3:+1551658 | MS.gene032589:CDS |
| CAATTGTTCAACTCCACGAA+TGG | 0.569077 | 6.3:+1552054 | MS.gene032589:CDS |
| GGTATGCATGAGATTGAAGT+TGG | 0.570442 | 6.3:-1551644 | None:intergenic |
| TTGAATTGGCCAAAACCCTA+AGG | 0.575366 | 6.3:-1551722 | None:intergenic |
| ACATTGCAAAAGAGAAAGGA+TGG | 0.582137 | 6.3:+1551175 | MS.gene032589:CDS |
| TTGTAAGATTCATCCCAAGT+TGG | 0.584895 | 6.3:-1551472 | None:intergenic |
| AACATTAGCATTAACCTGAT+GGG | 0.586384 | 6.3:-1551830 | None:intergenic |
| AAAGATGATGTATCCAACTT+GGG | 0.588589 | 6.3:+1551459 | MS.gene032589:CDS |
| TGTTCGTAGACAATGGGTCG+TGG | 0.595877 | 6.3:+1551106 | None:intergenic |
| GCTCCCAACCTTGAAGGCCA+AGG | 0.597883 | 6.3:+1551262 | MS.gene032589:CDS |
| TTTACAAAGTGCGTAAAGAG+AGG | 0.599078 | 6.3:+1551434 | MS.gene032589:CDS |
| TGCATACCAACATGTCTCAA+GGG | 0.610432 | 6.3:+1551659 | MS.gene032589:CDS |
| TAGCATCAATATGCTTGCAA+GGG | 0.621207 | 6.3:-1551801 | None:intergenic |
| TGGTTTAATAAAGAAAGCAA+AGG | 0.644031 | 6.3:+1551195 | MS.gene032589:CDS |
| GAACTGGAAACCATAAGGGA+AGG | 0.661731 | 6.3:-1551763 | None:intergenic |
| GATATGTTGAACCTGAAACA+TGG | 0.676143 | 6.3:+1551284 | MS.gene032589:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 6.3:+1551303 | MS.gene032589:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTCTTGAACATCAT+AGG | - | chr6.3:1551383-1551402 | None:intergenic | 20.0% |
| !! | ATTTGTGATAAAAATACCTT+AGG | + | chr6.3:1551706-1551725 | MS.gene032589:CDS | 20.0% |
| !! | TTATCACAAATATTCATCAA+TGG | - | chr6.3:1551697-1551716 | None:intergenic | 20.0% |
| !! | TTGAATACTATCTATATCAT+AGG | - | chr6.3:1552031-1552050 | None:intergenic | 20.0% |
| !! | TTTGTGATAAAAATACCTTA+GGG | + | chr6.3:1551707-1551726 | MS.gene032589:CDS | 20.0% |
| !!! | TTCAAGAATATTTTAAAGAG+AGG | + | chr6.3:1551389-1551408 | MS.gene032589:CDS | 20.0% |
| ! | AACAATTGAGGTCATTTATT+AGG | + | chr6.3:1551509-1551528 | MS.gene032589:CDS | 25.0% |
| ! | ATCCATAAAGTAGATATTCA+TGG | - | chr6.3:1552008-1552027 | None:intergenic | 25.0% |
| ! | TCCATAAAGTAGATATTCAT+GGG | - | chr6.3:1552007-1552026 | None:intergenic | 25.0% |
| ! | TGGTTTAATAAAGAAAGCAA+AGG | + | chr6.3:1551195-1551214 | MS.gene032589:CDS | 25.0% |
| ! | TTTCCATTGTAATAGTATGA+TGG | - | chr6.3:1551916-1551935 | None:intergenic | 25.0% |
| !! | ATAAAAATACCTTAGGGTTT+TGG | + | chr6.3:1551713-1551732 | MS.gene032589:CDS | 25.0% |
| !! | GATGAATCTTACAATTCTTT+TGG | + | chr6.3:1551481-1551500 | MS.gene032589:CDS | 25.0% |
| !!! | TTCTTCTTCATACTGATTTT+GGG | - | chr6.3:1551865-1551884 | None:intergenic | 25.0% |
| AAAGATGATGTATCCAACTT+GGG | + | chr6.3:1551459-1551478 | MS.gene032589:CDS | 30.0% | |
| AAAGTAGATATTCATGGGAT+AGG | - | chr6.3:1552002-1552021 | None:intergenic | 30.0% | |
| AACATCAACATCACAAAGAA+TGG | - | chr6.3:1551227-1551246 | None:intergenic | 30.0% | |
| AACATTAGCATTAACCTGAT+GGG | - | chr6.3:1551833-1551852 | None:intergenic | 30.0% | |
| ACTATGACACAACAATTGAT+AGG | + | chr6.3:1551347-1551366 | MS.gene032589:CDS | 30.0% | |
| ATCTATGGAACTCATTCAAA+AGG | + | chr6.3:1551135-1551154 | MS.gene032589:CDS | 30.0% | |
| CAAAATCAGTATGAAGAAGA+AGG | + | chr6.3:1551864-1551883 | MS.gene032589:CDS | 30.0% | |
| GATAACATTGCAAAAGAGAA+AGG | + | chr6.3:1551171-1551190 | MS.gene032589:CDS | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | + | chr6.3:1551458-1551477 | MS.gene032589:CDS | 30.0% | |
| TAACATTAGCATTAACCTGA+TGG | - | chr6.3:1551834-1551853 | None:intergenic | 30.0% | |
| TCATGTAAGGAGAACTAATA+AGG | - | chr6.3:1551609-1551628 | None:intergenic | 30.0% | |
| TCCCATGAATATCTACTTTA+TGG | + | chr6.3:1552003-1552022 | MS.gene032589:CDS | 30.0% | |
| TTGCCATCATACTATTACAA+TGG | + | chr6.3:1551910-1551929 | MS.gene032589:CDS | 30.0% | |
| ! | AGATTCTGAAAAGAAGTAGT+AGG | - | chr6.3:1551973-1551992 | None:intergenic | 30.0% |
| ! | CTTTTGGATATGAACAATTG+AGG | + | chr6.3:1551497-1551516 | MS.gene032589:CDS | 30.0% |
| ! | GAGGTCATTTATTAGGTTTT+TGG | + | chr6.3:1551516-1551535 | MS.gene032589:CDS | 30.0% |
| !!! | CTTCTTCTTCATACTGATTT+TGG | - | chr6.3:1551866-1551885 | None:intergenic | 30.0% |
| AATATGCTTGCAAGGGTAAT+AGG | - | chr6.3:1551797-1551816 | None:intergenic | 35.0% | |
| ACATTGCAAAAGAGAAAGGA+TGG | + | chr6.3:1551175-1551194 | MS.gene032589:CDS | 35.0% | |
| AGTATGAAGAAGAAGGATGA+AGG | + | chr6.3:1551871-1551890 | MS.gene032589:CDS | 35.0% | |
| GATATGTTGAACCTGAAACA+TGG | + | chr6.3:1551284-1551303 | MS.gene032589:CDS | 35.0% | |
| GCGAAAAAATGAATCACACA+AGG | + | chr6.3:1551576-1551595 | MS.gene032589:CDS | 35.0% | |
| TAGCATCAATATGCTTGCAA+GGG | - | chr6.3:1551804-1551823 | None:intergenic | 35.0% | |
| TCTTGAACATCATAGGTCTT+AGG | - | chr6.3:1551376-1551395 | None:intergenic | 35.0% | |
| TTAGCATCAATATGCTTGCA+AGG | - | chr6.3:1551805-1551824 | None:intergenic | 35.0% | |
| TTGTAAGATTCATCCCAAGT+TGG | - | chr6.3:1551475-1551494 | None:intergenic | 35.0% | |
| TTGTGAACTGGAAACCATAA+GGG | - | chr6.3:1551770-1551789 | None:intergenic | 35.0% | |
| TTTACAAAGTGCGTAAAGAG+AGG | + | chr6.3:1551434-1551453 | MS.gene032589:CDS | 35.0% | |
| TTTGTGAACTGGAAACCATA+AGG | - | chr6.3:1551771-1551790 | None:intergenic | 35.0% | |
| ! | AATTTTCCCTTGAGACATGT+TGG | - | chr6.3:1551668-1551687 | None:intergenic | 35.0% |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | - | chr6.3:1551310-1551329 | None:intergenic | 35.0% |
| !! | GAGCTTTGTTCCAATTGAAT+TGG | - | chr6.3:1551739-1551758 | None:intergenic | 35.0% |
| !! | TTTCAGGTTCAACATATCCT+TGG | - | chr6.3:1551282-1551301 | None:intergenic | 35.0% |
| ATGCATACCAACATGTCTCA+AGG | + | chr6.3:1551658-1551677 | MS.gene032589:CDS | 40.0% | |
| ATGGCCTAAAGACAAAAGAG+AGG | + | chr6.3:1551303-1551322 | MS.gene032589:CDS | 40.0% | |
| CAATTGTTCAACTCCACGAA+TGG | + | chr6.3:1552054-1552073 | MS.gene032589:CDS | 40.0% | |
| CCTTACATGACCTCAAATTC+AGG | + | chr6.3:1551619-1551638 | MS.gene032589:CDS | 40.0% | |
| GAAGTAGTAGGCATAGCAAT+AGG | - | chr6.3:1551961-1551980 | None:intergenic | 40.0% | |
| GCAAGCATATTGATGCTAAC+TGG | + | chr6.3:1551806-1551825 | MS.gene032589:CDS | 40.0% | |
| GGTATGCATGAGATTGAAGT+TGG | - | chr6.3:1551647-1551666 | None:intergenic | 40.0% | |
| TGCATACCAACATGTCTCAA+GGG | + | chr6.3:1551659-1551678 | MS.gene032589:CDS | 40.0% | |
| TTGAATTGGCCAAAACCCTA+AGG | - | chr6.3:1551725-1551744 | None:intergenic | 40.0% | |
| TTGTCTTTAGGCCATGTTTC+AGG | - | chr6.3:1551298-1551317 | None:intergenic | 40.0% | |
| ! | CCTGAATTTGAGGTCATGTA+AGG | - | chr6.3:1551622-1551641 | None:intergenic | 40.0% |
| ! | GTAATAGGAGCTTTGTGAAC+TGG | - | chr6.3:1551782-1551801 | None:intergenic | 40.0% |
| !! | AGGGTTTTGGCCAATTCAAT+TGG | + | chr6.3:1551726-1551745 | MS.gene032589:CDS | 40.0% |
| !! | GAAGTTGGTACCTGAATTTG+AGG | - | chr6.3:1551632-1551651 | None:intergenic | 40.0% |
| AAGCTCTCAACCTTCCCTTA+TGG | + | chr6.3:1551753-1551772 | MS.gene032589:CDS | 45.0% | |
| GAACTGGAAACCATAAGGGA+AGG | - | chr6.3:1551766-1551785 | None:intergenic | 45.0% | |
| GGGTCGTGGAAGAATATCTA+TGG | + | chr6.3:1551120-1551139 | MS.gene032589:CDS | 45.0% | |
| ! | ATATCCTTGGCCTTCAAGGT+TGG | - | chr6.3:1551269-1551288 | None:intergenic | 45.0% |
| ! | CAACATATCCTTGGCCTTCA+AGG | - | chr6.3:1551273-1551292 | None:intergenic | 45.0% |
| ! | TATCCTTGGCCTTCAAGGTT+GGG | - | chr6.3:1551268-1551287 | None:intergenic | 45.0% |
| CTGTATGCTCCCAACCTTGA+AGG | + | chr6.3:1551256-1551275 | MS.gene032589:CDS | 50.0% | |
| TGATGCTAACTGGACCCATC+AGG | + | chr6.3:1551816-1551835 | MS.gene032589:CDS | 50.0% | |
| ! | CTTCAAGGTTGGGAGCATAC+AGG | - | chr6.3:1551258-1551277 | None:intergenic | 50.0% |
| GCTCCCAACCTTGAAGGCCA+AGG | + | chr6.3:1551262-1551281 | MS.gene032589:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 1551118 | 1552086 | 1551118 | ID=MS.gene032589 |
| chr6.3 | mRNA | 1551118 | 1552086 | 1551118 | ID=MS.gene032589.t1;Parent=MS.gene032589 |
| chr6.3 | exon | 1551118 | 1552086 | 1551118 | ID=MS.gene032589.t1.exon1;Parent=MS.gene032589.t1 |
| chr6.3 | CDS | 1551118 | 1552086 | 1551118 | ID=cds.MS.gene032589.t1;Parent=MS.gene032589.t1 |
| Gene Sequence |
| Protein sequence |
