AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03266

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03266.t1 MTR_3g465280 66.667 75 21 3 22 95 9 80 4.14e-25 100
MS.gene03266.t1 MTR_3g465280 42.017 119 59 5 1 117 83 193 1.43e-17 79.7
MS.gene03266.t1 MTR_4g079500 43.158 95 54 0 108 202 194 288 2.46e-18 82.4
MS.gene03266.t1 MTR_2g090900 42.105 95 55 0 108 202 191 285 2.57e-17 79.7
MS.gene03266.t1 MTR_2g090900 42.105 95 55 0 108 202 191 285 3.76e-17 79.0
MS.gene03266.t1 MTR_5g075390 33.858 127 76 1 82 200 125 251 1.72e-12 65.9
MS.gene03266.t1 MTR_3g467120 39.362 94 57 0 107 200 176 269 2.78e-12 65.5
MS.gene03266.t1 MTR_2g099050 37.500 96 60 0 107 202 220 315 7.26e-12 64.3
MS.gene03266.t1 MTR_3g094020 31.944 144 89 2 78 212 69 212 1.07e-11 63.5
MS.gene03266.t1 MTR_4g072090 36.893 103 65 0 108 210 360 462 1.49e-11 63.5
MS.gene03266.t1 MTR_6g034945 36.364 110 70 0 107 216 150 259 2.87e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03266.t1 AT2G42380 40.179 112 67 0 91 202 169 280 2.43e-19 85.1
MS.gene03266.t1 AT3G58120 39.823 113 67 1 90 202 185 296 1.63e-18 82.8
MS.gene03266.t1 AT2G42380 41.667 96 56 0 91 186 169 264 7.31e-17 77.4
MS.gene03266.t1 AT3G58120 41.237 97 56 1 90 186 185 280 5.64e-16 75.5
MS.gene03266.t1 AT2G42380 34.821 112 62 1 91 202 169 269 3.17e-13 67.8
MS.gene03266.t1 AT2G40620 39.362 94 57 0 107 200 147 240 3.69e-12 65.1
MS.gene03266.t1 AT1G43700 40.426 94 56 0 107 200 193 286 4.25e-12 64.7
MS.gene03266.t1 AT1G06850 40.426 94 56 0 107 200 147 240 6.30e-12 64.3
MS.gene03266.t1 AT4G38900 37.634 93 58 0 108 200 394 486 7.58e-12 64.7
MS.gene03266.t1 AT4G38900 37.634 93 58 0 108 200 394 486 7.58e-12 64.7
MS.gene03266.t1 AT1G06070 38.542 96 59 0 107 202 209 304 1.22e-11 63.9
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 1.99e-11 63.2
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 3.33e-11 62.4
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 3.33e-11 62.4
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 3.33e-11 62.4
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 3.33e-11 62.4
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 3.33e-11 62.4
MS.gene03266.t1 AT2G31370 36.538 104 66 0 107 210 200 303 3.33e-11 62.4
MS.gene03266.t1 AT5G07160 39.785 93 56 0 108 200 48 140 6.37e-11 58.9
MS.gene03266.t1 AT2G21230 37.624 101 58 1 108 208 370 465 9.11e-11 61.2
MS.gene03266.t1 AT2G21230 37.624 101 58 1 108 208 370 465 9.11e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATTTCAAGTCTTAAT+TGG 0.195639 6.2:+29540028 None:intergenic
GCTTGATTATATTGCTGATT+TGG 0.251448 6.2:-29540677 MS.gene03266:CDS
GCATGACCAAGATTTGATTT+TGG 0.261059 6.2:+29541298 None:intergenic
TTTCTTTAACCAGCTCAAAT+TGG 0.268042 6.2:-29538967 MS.gene03266:intron
TTTGTACCAGTCATTCTCTT+TGG 0.270280 6.2:+29541511 None:intergenic
CTAACCATGTTTGATTTCTT+AGG 0.274809 6.2:+29541460 None:intergenic
GTATACCGTTTGAGCCTCTT+TGG 0.277816 6.2:+29541199 None:intergenic
TTGTACCAGTCATTCTCTTT+GGG 0.334410 6.2:+29541512 None:intergenic
ATAAGAGAGCTGAGGTGAAT+AGG 0.348904 6.2:-29539875 MS.gene03266:CDS
TCAGCAGTGGTTGTTGACTA+TGG 0.374097 6.2:-29540058 MS.gene03266:CDS
TTCTTAGGATCCTAGCAAAT+AGG 0.398250 6.2:-29540729 MS.gene03266:intron
TTCGATCATGGCAACCCTCT+TGG 0.403712 6.2:-29541408 MS.gene03266:CDS
AGTGTACCAAAATCAAATCT+TGG 0.459311 6.2:-29541304 MS.gene03266:CDS
CGTCATCAACATTTCGATCA+TGG 0.470936 6.2:-29541420 MS.gene03266:CDS
TAGATCCAAAGAGGCTCAAA+CGG 0.503383 6.2:-29541204 MS.gene03266:intron
GTGCAGAAGTCCTATTTGCT+AGG 0.510529 6.2:+29540719 None:intergenic
CAATTTCAAGTCTTAATTGG+TGG 0.518334 6.2:+29540031 None:intergenic
GATGACGATCCATGTGATAA+GGG 0.521735 6.2:+29541436 None:intergenic
AAACAAGAGGCGAGTAGCAG+TGG 0.525757 6.2:-29541367 MS.gene03266:CDS
GAGCTGAGGTGAATAGGCTG+AGG 0.526514 6.2:-29539869 MS.gene03266:CDS
TGATGACGATCCATGTGATA+AGG 0.527145 6.2:+29541435 None:intergenic
AGACTTCAACTTGTGGGTGA+AGG 0.531659 6.2:+29540088 None:intergenic
TATTGCTGATTTGGAGCGGA+AGG 0.534850 6.2:-29540668 MS.gene03266:CDS
GGCATCCCAAAGAGAATGAC+TGG 0.538746 6.2:-29541517 MS.gene03266:CDS
TTGTTGAAGCACAAACTAAG+AGG 0.547290 6.2:-29539827 MS.gene03266:intron
AACATGTTGCACACAGAAGA+GGG 0.550817 6.2:-29541490 MS.gene03266:CDS
TTGCACACAGAAGAGGGACC+TGG 0.552875 6.2:-29541484 MS.gene03266:CDS
ATGTTTGATTTCTTAGGCCC+AGG 0.557475 6.2:+29541466 None:intergenic
GATTGAGAATAAGAGAGCTG+AGG 0.559603 6.2:-29539883 MS.gene03266:CDS
GCATCTGCATGTGTTGGTGT+TGG 0.564639 6.2:-29541247 MS.gene03266:CDS
GGTAGTGCATCTGCATGTGT+TGG 0.568494 6.2:-29541253 MS.gene03266:CDS
TGCACACAGAAGAGGGACCT+GGG 0.596481 6.2:-29541483 MS.gene03266:CDS
AAACATGTTGCACACAGAAG+AGG 0.606246 6.2:-29541491 MS.gene03266:CDS
TACTCGCCTCTTGTTTACCT+AGG 0.607532 6.2:+29541374 None:intergenic
AGCTGAGGTGAATAGGCTGA+GGG 0.614102 6.2:-29539868 MS.gene03266:CDS
TTAACCAGCTCAAATTGGAG+AGG 0.616917 6.2:-29538962 MS.gene03266:intron
AAAGAAAGGATACTTCAAGA+AGG 0.624481 6.2:-29539997 MS.gene03266:intron
AGGTCAATGCTCTTCCAAGA+GGG 0.633110 6.2:+29541394 None:intergenic
ATGCACTACCACCACTGATG+TGG 0.638397 6.2:+29541266 None:intergenic
TAGGTCAATGCTCTTCCAAG+AGG 0.640259 6.2:+29541393 None:intergenic
ATGGTTAGACCCTTATCACA+TGG 0.645719 6.2:-29541445 MS.gene03266:CDS
AAATTGGAGAGGAAGCATCA+AGG 0.646077 6.2:-29538951 MS.gene03266:CDS
GGACTTCTGCACAGAAATCG+AGG 0.648228 6.2:-29540708 MS.gene03266:CDS
GCTGAGAAGAACCACATCAG+TGG 0.651233 6.2:-29541277 MS.gene03266:CDS
ATTATATTGCTGATTTGGAG+CGG 0.651960 6.2:-29540672 MS.gene03266:CDS
TCTTGGAAGAGCATTGACCT+AGG 0.653592 6.2:-29541391 MS.gene03266:CDS
GAGAAGAACCACATCAGTGG+TGG 0.658310 6.2:-29541274 MS.gene03266:CDS
CATTGACCTAGGTAAACAAG+AGG 0.671247 6.2:-29541380 MS.gene03266:CDS
TGGGCCTAAGAAATCAAACA+TGG 0.705886 6.2:-29541464 MS.gene03266:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAAATCTAATAAT+GGG - chr6.2:29539408-29539427 MS.gene03266:intron 10.0%
!! AATTTATTTCAATTTCAATT+TGG + chr6.2:29539985-29540004 None:intergenic 10.0%
!! ATTAAAATAAATCTATATGT+TGG - chr6.2:29539515-29539534 MS.gene03266:intron 10.0%
!! GAAGAAAAAAAATCTAATAA+TGG - chr6.2:29539407-29539426 MS.gene03266:intron 15.0%
!! TATCATACATGATAAAAATA+TGG - chr6.2:29540760-29540779 MS.gene03266:intron 15.0%
!!! TTATTAGATTTTTTTTCTTC+AGG + chr6.2:29539407-29539426 None:intergenic 15.0%
!!! TTTTGTTTCAATTTTTTCAA+TGG + chr6.2:29539640-29539659 None:intergenic 15.0%
!! AAAATTGAAACAAAATACCT+CGG - chr6.2:29539645-29539664 MS.gene03266:intron 20.0%
!! ACAGAAACATATGTTATATA+TGG + chr6.2:29541338-29541357 None:intergenic 20.0%
!! ATGCCTAAAAAATCATAATT+AGG - chr6.2:29540716-29540735 MS.gene03266:CDS 20.0%
!! GTCGATTATTTGTATTAATT+TGG - chr6.2:29540085-29540104 MS.gene03266:CDS 20.0%
!! TGCCTAAAAAATCATAATTA+GGG - chr6.2:29540717-29540736 MS.gene03266:CDS 20.0%
!!! AACCCTAATTATGATTTTTT+AGG + chr6.2:29540722-29540741 None:intergenic 20.0%
!!! AATTTTAAGACATCAATGTA+AGG + chr6.2:29540868-29540887 None:intergenic 20.0%
!!! ATATTATATCGATTATGTGT+AGG + chr6.2:29539681-29539700 None:intergenic 20.0%
!!! ATTTTAAGACATCAATGTAA+GGG + chr6.2:29540867-29540886 None:intergenic 20.0%
!!! TAAATTTGTCTTTTCTTTCA+AGG + chr6.2:29540976-29540995 None:intergenic 20.0%
!!! TGAGATTTTTTTATATATGC+AGG - chr6.2:29540336-29540355 MS.gene03266:intron 20.0%
!!! TTTCAATTTTTTCAATGGTT+TGG + chr6.2:29539635-29539654 None:intergenic 20.0%
! AATTCTGTGATATATTACAG+CGG - chr6.2:29541217-29541236 MS.gene03266:CDS 25.0%
! ACATACTCATGTGAAATAAA+TGG + chr6.2:29540543-29540562 None:intergenic 25.0%
! ATCTTGATCTGATATTTGAT+TGG - chr6.2:29540223-29540242 MS.gene03266:intron 25.0%
! ATTGGTATAACTCAACAAAT+TGG - chr6.2:29540241-29540260 MS.gene03266:intron 25.0%
! CAAATCAACTATATTAGTCA+GGG + chr6.2:29539590-29539609 None:intergenic 25.0%
! CATAACACTAAAAGTTTGAT+GGG - chr6.2:29539344-29539363 MS.gene03266:intron 25.0%
! TAGTATACAGATATATGTTG+AGG - chr6.2:29541000-29541019 MS.gene03266:intron 25.0%
! TCAAATCAACTATATTAGTC+AGG + chr6.2:29539591-29539610 None:intergenic 25.0%
! TCACATATCAACTTGTAATT+TGG - chr6.2:29540166-29540185 MS.gene03266:intron 25.0%
! TCATAACACTAAAAGTTTGA+TGG - chr6.2:29539343-29539362 MS.gene03266:intron 25.0%
! TTGTTGTAAGAGAAAAAGAA+AGG - chr6.2:29540449-29540468 MS.gene03266:intron 25.0%
! TTTGAATATGTAAGTAGCAA+CGG + chr6.2:29541287-29541306 None:intergenic 25.0%
!! CAAATTGAAATTCTTTGAAG+TGG + chr6.2:29540066-29540085 None:intergenic 25.0%
!! CAACAATTTCAAGTCTTAAT+TGG + chr6.2:29540435-29540454 None:intergenic 25.0%
!! TTTTATAGACTTCAACTTGT+GGG + chr6.2:29540381-29540400 None:intergenic 25.0%
!! TTTTTATAGACTTCAACTTG+TGG + chr6.2:29540382-29540401 None:intergenic 25.0%
!!! AAATTCTTTGAAGTGGTAAT+CGG + chr6.2:29540059-29540078 None:intergenic 25.0%
!!! ATGAGTATGTTTATTTTCAG+TGG - chr6.2:29540553-29540572 MS.gene03266:intron 25.0%
!!! TTATTAGTTTTCTTGTCTTG+TGG + chr6.2:29539132-29539151 None:intergenic 25.0%
AAAGAAAGGATACTTCAAGA+AGG - chr6.2:29540463-29540482 MS.gene03266:intron 30.0%
AAGTCTATAAAAATCAGCAG+TGG - chr6.2:29540389-29540408 MS.gene03266:intron 30.0%
AGTGTACCAAAATCAAATCT+TGG - chr6.2:29539156-29539175 MS.gene03266:intron 30.0%
AGTTTGATGGGAATAGTATT+TGG - chr6.2:29539356-29539375 MS.gene03266:intron 30.0%
ATACAGATATATGTTGAGGT+TGG - chr6.2:29541004-29541023 MS.gene03266:intron 30.0%
ATAGATCGATTACGATTGAA+TGG + chr6.2:29540146-29540165 None:intergenic 30.0%
ATTCTGTGATATATTACAGC+GGG - chr6.2:29541218-29541237 MS.gene03266:CDS 30.0%
GATTCTCATCTAAAGATCAT+AGG + chr6.2:29539939-29539958 None:intergenic 30.0%
GTTGTTTATTGTAGACCAAA+CGG + chr6.2:29541176-29541195 None:intergenic 30.0%
TAATGGGAGTTGTTCTATTT+AGG - chr6.2:29539424-29539443 MS.gene03266:intron 30.0%
TGATAAAAAGTGAGAGAACA+TGG - chr6.2:29540830-29540849 MS.gene03266:intron 30.0%
TTGAATATGTAAGTAGCAAC+GGG + chr6.2:29541286-29541305 None:intergenic 30.0%
TTGTGAGCAACACAAAAATA+TGG - chr6.2:29539302-29539321 MS.gene03266:intron 30.0%
TTTCTTTAACCAGCTCAAAT+TGG - chr6.2:29541493-29541512 MS.gene03266:CDS 30.0%
! CAATTTCAAGTCTTAATTGG+TGG + chr6.2:29540432-29540451 None:intergenic 30.0%
! CTAACCATGTTTGATTTCTT+AGG + chr6.2:29539003-29539022 None:intergenic 30.0%
! GCTTGATTATATTGCTGATT+TGG - chr6.2:29539783-29539802 MS.gene03266:intron 30.0%
! TCTCTTCACAAGTTTTTGTT+TGG + chr6.2:29540310-29540329 None:intergenic 30.0%
!! AGTTTTTGTTTGGGTAGATA+TGG + chr6.2:29540300-29540319 None:intergenic 30.0%
!! ATTATATTGCTGATTTGGAG+CGG - chr6.2:29539788-29539807 MS.gene03266:intron 30.0%
!! CTCTTCACAAGTTTTTGTTT+GGG + chr6.2:29540309-29540328 None:intergenic 30.0%
AAATCTCCTACTGTTAGAAC+AGG - chr6.2:29541068-29541087 MS.gene03266:intron 35.0%
AGACCAAACGGTTCAAATTA+AGG + chr6.2:29541164-29541183 None:intergenic 35.0%
AGATTTAGACCAAAAAGCAG+GGG + chr6.2:29541054-29541073 None:intergenic 35.0%
CACAAAAACTAGATCCAAAG+AGG - chr6.2:29539247-29539266 MS.gene03266:intron 35.0%
GAAACTACACACAAACACAA+AGG + chr6.2:29540790-29540809 None:intergenic 35.0%
GAGAAAATCACTAAGGAGAA+GGG + chr6.2:29541262-29541281 None:intergenic 35.0%
GAGATTTAGACCAAAAAGCA+GGG + chr6.2:29541055-29541074 None:intergenic 35.0%
TGAATATGTAAGTAGCAACG+GGG + chr6.2:29541285-29541304 None:intergenic 35.0%
TGGTTCATCCTAAACAACAA+GGG - chr6.2:29540261-29540280 MS.gene03266:intron 35.0%
TGTTCTATTTAGGCTTGTCA+TGG - chr6.2:29539434-29539453 MS.gene03266:intron 35.0%
TTCTTAGGATCCTAGCAAAT+AGG - chr6.2:29539731-29539750 MS.gene03266:intron 35.0%
TTGGTTCATCCTAAACAACA+AGG - chr6.2:29540260-29540279 MS.gene03266:intron 35.0%
TTGTACCAGTCATTCTCTTT+GGG + chr6.2:29538951-29538970 None:intergenic 35.0%
TTGTTGAAGCACAAACTAAG+AGG - chr6.2:29540633-29540652 MS.gene03266:intron 35.0%
TTTGTACCAGTCATTCTCTT+TGG + chr6.2:29538952-29538971 None:intergenic 35.0%
TTTGTTTGGGTAGATATGGT+GGG + chr6.2:29540296-29540315 None:intergenic 35.0%
! TTTTGTCTTCCGTTGTTCTT+AGG - chr6.2:29539716-29539735 MS.gene03266:intron 35.0%
!! ATATGGATCCCTTGTTGTTT+AGG + chr6.2:29540272-29540291 None:intergenic 35.0%
!! GCATGACCAAGATTTGATTT+TGG + chr6.2:29539165-29539184 None:intergenic 35.0%
!! TTTTGTTTGGGTAGATATGG+TGG + chr6.2:29540297-29540316 None:intergenic 35.0%
AAACATGTTGCACACAGAAG+AGG - chr6.2:29538969-29538988 MS.gene03266:intron 40.0%
AACATGTTGCACACAGAAGA+GGG - chr6.2:29538970-29538989 MS.gene03266:intron 40.0%
ACCTCCAGATCTTAAATGTG+TGG - chr6.2:29541109-29541128 MS.gene03266:intron 40.0%
AGATCATAGGCTTTCACGAT+CGG + chr6.2:29539926-29539945 None:intergenic 40.0%
ATAAGAGAGCTGAGGTGAAT+AGG - chr6.2:29540585-29540604 MS.gene03266:intron 40.0%
ATGGTTAGACCCTTATCACA+TGG - chr6.2:29539015-29539034 MS.gene03266:intron 40.0%
CAGATATATGTTGAGGTTGG+TGG - chr6.2:29541007-29541026 MS.gene03266:intron 40.0%
CATTGACCTAGGTAAACAAG+AGG - chr6.2:29539080-29539099 MS.gene03266:intron 40.0%
CGTCATCAACATTTCGATCA+TGG - chr6.2:29539040-29539059 MS.gene03266:intron 40.0%
GAATATGTAAGTAGCAACGG+GGG + chr6.2:29541284-29541303 None:intergenic 40.0%
GATGACGATCCATGTGATAA+GGG + chr6.2:29539027-29539046 None:intergenic 40.0%
GATTGAGAATAAGAGAGCTG+AGG - chr6.2:29540577-29540596 MS.gene03266:intron 40.0%
GCGGAAGGAAAAATATTTGC+AGG - chr6.2:29539807-29539826 MS.gene03266:intron 40.0%
GGAGAAAATCACTAAGGAGA+AGG + chr6.2:29541263-29541282 None:intergenic 40.0%
GGAGATTTAGACCAAAAAGC+AGG + chr6.2:29541056-29541075 None:intergenic 40.0%
GTGTAGGAAATAAACAACCG+AGG + chr6.2:29539665-29539684 None:intergenic 40.0%
TAGATCCAAAGAGGCTCAAA+CGG - chr6.2:29539256-29539275 MS.gene03266:intron 40.0%
TATATTACAGCGGGCAATCT+CGG - chr6.2:29541227-29541246 MS.gene03266:CDS 40.0%
TGCTAGGATCCTAAGAACAA+CGG + chr6.2:29539728-29539747 None:intergenic 40.0%
TGGGCCTAAGAAATCAAACA+TGG - chr6.2:29538996-29539015 MS.gene03266:intron 40.0%
TTAACCAGCTCAAATTGGAG+AGG - chr6.2:29541498-29541517 MS.gene03266:CDS 40.0%
! ATGTTTGATTTCTTAGGCCC+AGG + chr6.2:29538997-29539016 None:intergenic 40.0%
! CTATTGCTCTAGATGTAGAG+CGG - chr6.2:29540033-29540052 MS.gene03266:CDS 40.0%
! CTGCCTTAATTTGAACCGTT+TGG - chr6.2:29541158-29541177 MS.gene03266:intron 40.0%
! TCAGCCACACATTTAAGATC+TGG + chr6.2:29541116-29541135 None:intergenic 40.0%
! TGATGACGATCCATGTGATA+AGG + chr6.2:29539028-29539047 None:intergenic 40.0%
!! AAATTGGAGAGGAAGCATCA+AGG - chr6.2:29541509-29541528 MS.gene03266:CDS 40.0%
!! CTGGAGGTTTTGATCTGTTA+TGG + chr6.2:29541097-29541116 None:intergenic 40.0%
!! TTTCACGTTGTTTTGCGTCT+TGG + chr6.2:29541198-29541217 None:intergenic 40.0%
AACGGGGGAGAAAATCACTA+AGG + chr6.2:29541269-29541288 None:intergenic 45.0%
AGACTTCAACTTGTGGGTGA+AGG + chr6.2:29540375-29540394 None:intergenic 45.0%
AGGTCAATGCTCTTCCAAGA+GGG + chr6.2:29539069-29539088 None:intergenic 45.0%
ATCATAGGCTTTCACGATCG+GGG + chr6.2:29539924-29539943 None:intergenic 45.0%
GATCATAGGCTTTCACGATC+GGG + chr6.2:29539925-29539944 None:intergenic 45.0%
GTATACCGTTTGAGCCTCTT+TGG + chr6.2:29539264-29539283 None:intergenic 45.0%
GTGCAGAAGTCCTATTTGCT+AGG + chr6.2:29539744-29539763 None:intergenic 45.0%
TAGGTCAATGCTCTTCCAAG+AGG + chr6.2:29539070-29539089 None:intergenic 45.0%
! GCCACACATTTAAGATCTGG+AGG + chr6.2:29541113-29541132 None:intergenic 45.0%
! GGGTAGATATGGTGGGAATA+TGG + chr6.2:29540289-29540308 None:intergenic 45.0%
! TACTCGCCTCTTGTTTACCT+AGG + chr6.2:29539089-29539108 None:intergenic 45.0%
! TCAGCAGTGGTTGTTGACTA+TGG - chr6.2:29540402-29540421 MS.gene03266:intron 45.0%
!! TATTGCTGATTTGGAGCGGA+AGG - chr6.2:29539792-29539811 MS.gene03266:intron 45.0%
!! TCTTGGAAGAGCATTGACCT+AGG - chr6.2:29539069-29539088 MS.gene03266:intron 45.0%
AAACAAGAGGCGAGTAGCAG+TGG - chr6.2:29539093-29539112 MS.gene03266:intron 50.0%
AGCTGAGGTGAATAGGCTGA+GGG - chr6.2:29540592-29540611 MS.gene03266:intron 50.0%
ATGCACTACCACCACTGATG+TGG + chr6.2:29539197-29539216 None:intergenic 50.0%
GAGAAGAACCACATCAGTGG+TGG - chr6.2:29539186-29539205 MS.gene03266:intron 50.0%
GCTGAGAAGAACCACATCAG+TGG - chr6.2:29539183-29539202 MS.gene03266:intron 50.0%
GCTTCCTCTCCAATTTGAGC+TGG + chr6.2:29541505-29541524 None:intergenic 50.0%
GGACTTCTGCACAGAAATCG+AGG - chr6.2:29539752-29539771 MS.gene03266:intron 50.0%
GGCATCCCAAAGAGAATGAC+TGG - chr6.2:29538943-29538962 MS.gene03266:CDS 50.0%
GGTAGTGCATCTGCATGTGT+TGG - chr6.2:29539207-29539226 MS.gene03266:intron 50.0%
TGGCGTCCTGTTCTAACAGT+AGG + chr6.2:29541077-29541096 None:intergenic 50.0%
TTCGATCATGGCAACCCTCT+TGG - chr6.2:29539052-29539071 MS.gene03266:intron 50.0%
! GCATCTGCATGTGTTGGTGT+TGG - chr6.2:29539213-29539232 MS.gene03266:intron 50.0%
GAGCTGAGGTGAATAGGCTG+AGG - chr6.2:29540591-29540610 MS.gene03266:intron 55.0%
TGCACACAGAAGAGGGACCT+GGG - chr6.2:29538977-29538996 MS.gene03266:intron 55.0%
TTGCACACAGAAGAGGGACC+TGG - chr6.2:29538976-29538995 MS.gene03266:intron 55.0%
!! GGTTTGGAGCCCCTGCTTTT+TGG - chr6.2:29541042-29541061 MS.gene03266:intron 55.0%
!! ATGTTGAGGTTGGTGGCCCG+TGG - chr6.2:29541014-29541033 MS.gene03266:intron 60.0%
!! TGTTGAGGTTGGTGGCCCGT+GGG - chr6.2:29541015-29541034 MS.gene03266:intron 60.0%
GGCTCCAAACCCCTTCCCAC+GGG + chr6.2:29541033-29541052 None:intergenic 65.0%
GGGCTCCAAACCCCTTCCCA+CGG + chr6.2:29541034-29541053 None:intergenic 65.0%
!! AGGTTGGTGGCCCGTGGGAA+GGG - chr6.2:29541020-29541039 MS.gene03266:intron 65.0%
GTGGCCCGTGGGAAGGGGTT+TGG - chr6.2:29541026-29541045 MS.gene03266:intron 70.0%
!! GAGGTTGGTGGCCCGTGGGA+AGG - chr6.2:29541019-29541038 MS.gene03266:intron 70.0%
!! GGTTGGTGGCCCGTGGGAAG+GGG - chr6.2:29541021-29541040 MS.gene03266:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 29538937 29541545 29538937 ID=MS.gene03266
chr6.2 mRNA 29538937 29541545 29538937 ID=MS.gene03266.t1;Parent=MS.gene03266
chr6.2 exon 29541205 29541545 29541205 ID=MS.gene03266.t1.exon1;Parent=MS.gene03266.t1
chr6.2 CDS 29541205 29541545 29541205 ID=cds.MS.gene03266.t1;Parent=MS.gene03266.t1
chr6.2 exon 29540654 29540744 29540654 ID=MS.gene03266.t1.exon2;Parent=MS.gene03266.t1
chr6.2 CDS 29540654 29540744 29540654 ID=cds.MS.gene03266.t1;Parent=MS.gene03266.t1
chr6.2 exon 29539998 29540124 29539998 ID=MS.gene03266.t1.exon3;Parent=MS.gene03266.t1
chr6.2 CDS 29539998 29540124 29539998 ID=cds.MS.gene03266.t1;Parent=MS.gene03266.t1
chr6.2 exon 29539828 29539909 29539828 ID=MS.gene03266.t1.exon4;Parent=MS.gene03266.t1
chr6.2 CDS 29539828 29539909 29539828 ID=cds.MS.gene03266.t1;Parent=MS.gene03266.t1
chr6.2 exon 29538937 29538976 29538937 ID=MS.gene03266.t1.exon5;Parent=MS.gene03266.t1
chr6.2 CDS 29538937 29538976 29538937 ID=cds.MS.gene03266.t1;Parent=MS.gene03266.t1
Gene Sequence

>MS.gene03266

ATGAAGGGCATCCCAAAGAGAATGACTGGTACAAACATGTTGCACACAGAAGAGGGACCTGGGCCTAAGAAATCAAACATGGTTAGACCCTTATCACATGGATCGTCATCAACATTTCGATCATGGCAACCCTCTTGGAAGAGCATTGACCTAGGTAAACAAGAGGCGAGTAGCAGTGGAGTCAAAGCAGCTCCACAAGACAAGAAAACTAATAACATTAGTGTACCAAAATCAAATCTTGGTCATGCTGAGAAGAACCACATCAGTGGTGGTAGTGCATCTGCATGTGTTGGTGTTGGTGATCAAGCAACACAAAAACTAGATCCAAAGAGGCTCAAACGGTATACTTCTGTTACTTATTGATGTTGTGAGCAACACAAAAATATGGAAGATCGAAATTTTTTATTCATAACACTAAAAGTTTGATGGGAATAGTATTTGGTTTTTATTACATTTTTTTCGTAAAACCTGAAGAAAAAAAATCTAATAATGGGAGTTGTTCTATTTAGGCTTGTCATGGTCAACTGTGATTTTAATAATAAATTTTGTAATTGTTTTCAGCTTATTTTTAATAAAAAATTAAAATAAATCTATATGTTGGCTTAATTTTCATGTTATTTAGATTAGATTTATCATCTATGAATGTGATACCCTGACTAATATAGTTGATTTGATTGATTTTATTCTAATCAAATCCAAACCATTGAAAAAATTGAAACAAAATACCTCGGTTGTTTATTTCCTACACATAATCGATATAATATATTTTTATTTTCATCTTTTGTCTTCCGTTGTTCTTAGGATCCTAGCAAATAGGACTTCTGCACAGAAATCGAGGTTGAAAAAGCTTGATTATATTGCTGATTTGGAGCGGAAGGAAAAATATTTGCAGGTTAACATCATTATCGTATCTCAAAGATTGTAATTTATGAATTTTTTGTCTTATTAAAATATGTTCACGTGTCTCAAAGAGAACTAGATTATCCCCGATCGTGAAAGCCTATGATCTTTAGATGAGAATCAAACAACGCAAATTCTAATTTCACCAAATTGAAATTGAAATAAATTCATATAATTTGTGTTGTTTGATCTTCATCTATTGCTCTAGATGTAGAGCGGCCGATTACCACTTCAAAGAATTTCAATTTGTCGATTATTTGTATTAATTTGGTGTAGACAAATACACAACGATCTTGCTAATTTAAACCATTCAATCGTAATCGATCTATTCACATATCAACTTGTAATTTGGAATTCAATTGTAAAATTGACATGCGACTCATTTGATCTTGATCTGATATTTGATTGGTATAACTCAACAAATTGGTTCATCCTAAACAACAAGGGATCCATATTCCCACCATATCTACCCAAACAAAAACTTGTGAAGAGATGATTTTGAGATTTTTTTATATATGCAGGCTGAGTTATCTTTCCTTCACCCACAAGTTGAAGTCTATAAAAATCAGCAGTGGTTGTTGACTATGGAACACCACCAATTAAGACTTGAAATTGTTGTAAGAGAAAAAGAAAGGATACTTCAAGAAGGTGTTAATACTCATTGTCTTTATTTATATCTCTAGCATTTATTCTCGTGTCTCTACCATTTATTTCACATGAGTATGTTTATTTTCAGTGGAGATTGAGAATAAGAGAGCTGAGGTGAATAGGCTGAGGGAGCTTCAGAAGAAGCTAGTTGTTGAAGCACAAACTAAGAGGTATATTGAAATGCTTACTAGTATTTTTAACAATATTTTTGTACTAAATAATATGACTCATATGCCTAAAAAATCATAATTAGGGTTTGTATATTAAAAATAATATATCATACATGATAAAAATATGGCGCTCCTTTGTGTTTGTGTGTAGTTTCATATTCTGTTGTGTTGTATATGATAAAAAGTGAGAGAACATGGATACAATGCTACCCTTACATTGATGTCTTAAAATTTGTATTTCAACAACACAACTCAAATATAAATTATGTGTGTGCTCGCACATGCGTGTGTATATAAATGTATAATCTTTGTTGATATCCTTGAAAGAAAAGACAAATTTATTGATAGTATACAGATATATGTTGAGGTTGGTGGCCCGTGGGAAGGGGTTTGGAGCCCCTGCTTTTTGGTCTAAATCTCCTACTGTTAGAACAGGACGCCATAACAGATCAAAACCTCCAGATCTTAAATGTGTGGCTGATTTGTTTACAATGATTTTATAACTGCCTTAATTTGAACCGTTTGGTCTACAATAAACAACCAAGACGCAAAACAACGTGAAAATTCTGTGATATATTACAGCGGGCAATCTCGGTTTTTGCTTCCCTTCTCCTTAGTGATTTTCTCCCCCGTTGCTACTTACATATTCAAATTTGACATTCAATTAACATAGTATGCAACCATATATAACATATGTTTCTGTATTATAGATATCATGTTTGTTTGTATGTACTTCACTATTTGTATCATGTTTATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTAACTATATTTTGCTAATTTCTTTAACCAGCTCAAATTGGAGAGGAAGCATCAAGGATAATGCAAACTGA
Protein sequence

>MS.gene03266.t1

MKGIPKRMTGTNMLHTEEGPGPKKSNMVRPLSHGSSSTFRSWQPSWKSIDLGKQEASSSGVKAAPQDKKTNNISVPKSNLGHAEKNHISGGSASACVGVGDQATQKLDPKRLKRILANRTSAQKSRLKKLDYIADLERKEKYLQAELSFLHPQVEVYKNQQWLLTMEHHQLRLEIVVREKERILQEVEIENKRAEVNRLRELQKKLVVEAQTKSSNWRGSIKDNAN