Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032701.t1 | KEH24711.1 | 96.3 | 542 | 20 | 0 | 1 | 542 | 67 | 608 | 1.90E-211 | 745.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032701.t1 | F4IHL3 | 44.4 | 54 | 30 | 0 | 468 | 521 | 539 | 592 | 2.9e-06 | 55.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032701.t1 | A0A072U5S3 | 96.3 | 542 | 20 | 0 | 1 | 542 | 67 | 608 | 1.4e-211 | 745.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene032701.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032701.t1 | MTR_6g003960 | 95.756 | 542 | 23 | 0 | 1 | 542 | 67 | 608 | 0.0 | 1060 |
MS.gene032701.t1 | MTR_4g084630 | 27.331 | 311 | 190 | 4 | 217 | 525 | 46 | 322 | 2.76e-36 | 138 |
MS.gene032701.t1 | MTR_4g070060 | 28.972 | 321 | 224 | 4 | 204 | 521 | 266 | 585 | 4.14e-34 | 137 |
MS.gene032701.t1 | MTR_2g034600 | 30.469 | 256 | 173 | 3 | 267 | 521 | 292 | 543 | 1.88e-31 | 128 |
MS.gene032701.t1 | MTR_2g034600 | 30.469 | 256 | 173 | 3 | 267 | 521 | 296 | 547 | 1.98e-31 | 128 |
MS.gene032701.t1 | MTR_2g034600 | 30.469 | 256 | 173 | 3 | 267 | 521 | 231 | 482 | 2.41e-31 | 127 |
MS.gene032701.t1 | MTR_5g041630 | 28.571 | 238 | 163 | 4 | 283 | 518 | 57 | 289 | 1.16e-24 | 104 |
MS.gene032701.t1 | MTR_1g115415 | 25.970 | 335 | 242 | 6 | 197 | 527 | 124 | 456 | 1.89e-24 | 107 |
MS.gene032701.t1 | MTR_5g068860 | 23.438 | 384 | 242 | 7 | 142 | 521 | 147 | 482 | 1.86e-23 | 104 |
MS.gene032701.t1 | MTR_5g068860 | 26.009 | 223 | 156 | 5 | 284 | 501 | 140 | 358 | 1.07e-13 | 73.9 |
MS.gene032701.t1 | MTR_2g067230 | 28.934 | 197 | 133 | 2 | 304 | 499 | 87 | 277 | 2.30e-21 | 95.5 |
MS.gene032701.t1 | MTR_5g094610 | 26.911 | 327 | 184 | 6 | 215 | 528 | 194 | 478 | 4.64e-20 | 94.0 |
MS.gene032701.t1 | MTR_2g049780 | 25.439 | 228 | 158 | 3 | 300 | 521 | 83 | 304 | 2.01e-18 | 86.7 |
MS.gene032701.t1 | MTR_7g081270 | 30.000 | 160 | 107 | 4 | 368 | 525 | 127 | 283 | 4.66e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032701.t1 | AT1G78930 | 50.766 | 522 | 248 | 5 | 12 | 531 | 70 | 584 | 0.0 | 523 |
MS.gene032701.t1 | AT4G38160 | 29.503 | 322 | 188 | 7 | 217 | 534 | 46 | 332 | 1.01e-36 | 140 |
MS.gene032701.t1 | AT4G38160 | 30.351 | 313 | 180 | 6 | 217 | 525 | 46 | 324 | 1.26e-36 | 139 |
MS.gene032701.t1 | AT4G38160 | 30.351 | 313 | 180 | 6 | 217 | 525 | 46 | 324 | 1.26e-36 | 139 |
MS.gene032701.t1 | AT4G38160 | 30.124 | 322 | 186 | 7 | 217 | 534 | 46 | 332 | 3.58e-36 | 139 |
MS.gene032701.t1 | AT2G21710 | 27.389 | 314 | 224 | 4 | 211 | 521 | 280 | 592 | 1.53e-31 | 129 |
MS.gene032701.t1 | AT4G14605 | 27.612 | 268 | 182 | 5 | 255 | 521 | 211 | 467 | 6.64e-30 | 123 |
MS.gene032701.t1 | AT4G14605 | 27.612 | 268 | 182 | 5 | 255 | 521 | 211 | 467 | 6.64e-30 | 123 |
MS.gene032701.t1 | AT2G03050 | 31.276 | 243 | 157 | 6 | 283 | 521 | 32 | 268 | 3.69e-28 | 114 |
MS.gene032701.t1 | AT2G03050 | 31.276 | 243 | 157 | 6 | 283 | 521 | 33 | 269 | 4.36e-28 | 114 |
MS.gene032701.t1 | AT2G36000 | 31.390 | 223 | 142 | 5 | 304 | 521 | 91 | 307 | 1.28e-24 | 105 |
MS.gene032701.t1 | AT2G36000 | 31.390 | 223 | 142 | 5 | 304 | 521 | 91 | 307 | 2.24e-24 | 104 |
MS.gene032701.t1 | AT4G02990 | 24.128 | 344 | 219 | 8 | 216 | 521 | 151 | 490 | 1.08e-22 | 102 |
MS.gene032701.t1 | AT4G02990 | 24.128 | 344 | 219 | 8 | 216 | 521 | 151 | 490 | 1.08e-22 | 102 |
MS.gene032701.t1 | AT5G55580 | 27.273 | 253 | 175 | 5 | 284 | 528 | 114 | 365 | 1.32e-22 | 100 |
MS.gene032701.t1 | AT2G21710 | 25.180 | 278 | 204 | 4 | 211 | 485 | 280 | 556 | 7.89e-22 | 99.8 |
MS.gene032701.t1 | AT2G21710 | 22.368 | 228 | 166 | 3 | 280 | 499 | 278 | 502 | 4.67e-13 | 72.0 |
MS.gene032701.t1 | AT5G55580 | 27.273 | 253 | 175 | 5 | 284 | 528 | 220 | 471 | 9.86e-22 | 99.0 |
MS.gene032701.t1 | AT2G21710 | 24.910 | 277 | 204 | 4 | 211 | 484 | 280 | 555 | 4.38e-21 | 97.4 |
MS.gene032701.t1 | AT2G21710 | 22.368 | 228 | 166 | 3 | 280 | 499 | 278 | 502 | 3.35e-13 | 72.8 |
MS.gene032701.t1 | AT2G44020 | 24.478 | 335 | 247 | 6 | 197 | 527 | 129 | 461 | 8.41e-21 | 96.3 |
MS.gene032701.t1 | AT2G34620 | 26.339 | 224 | 161 | 3 | 300 | 521 | 69 | 290 | 2.62e-19 | 89.4 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT1G61970 | 26.852 | 324 | 195 | 10 | 198 | 503 | 70 | 369 | 1.51e-18 | 88.6 |
MS.gene032701.t1 | AT3G18870 | 27.607 | 163 | 115 | 2 | 363 | 525 | 113 | 272 | 2.55e-17 | 82.8 |
MS.gene032701.t1 | AT1G61980 | 25.559 | 313 | 213 | 10 | 198 | 503 | 70 | 369 | 1.67e-15 | 79.3 |
MS.gene032701.t1 | AT1G61980 | 25.559 | 313 | 213 | 10 | 198 | 503 | 70 | 369 | 1.67e-15 | 79.3 |
MS.gene032701.t1 | AT1G61980 | 25.559 | 313 | 213 | 10 | 198 | 503 | 70 | 369 | 1.67e-15 | 79.3 |
MS.gene032701.t1 | AT1G62120 | 25.170 | 294 | 206 | 8 | 214 | 502 | 90 | 374 | 2.51e-15 | 79.0 |
MS.gene032701.t1 | AT1G61990 | 24.138 | 406 | 270 | 12 | 144 | 534 | 2 | 384 | 3.55e-15 | 78.2 |
MS.gene032701.t1 | AT1G61990 | 24.138 | 406 | 270 | 12 | 144 | 534 | 2 | 384 | 3.55e-15 | 78.2 |
MS.gene032701.t1 | AT1G62110 | 25.161 | 310 | 221 | 8 | 197 | 503 | 105 | 406 | 4.37e-15 | 78.2 |
MS.gene032701.t1 | AT1G62010 | 32.386 | 176 | 114 | 4 | 327 | 502 | 182 | 352 | 8.00e-15 | 77.0 |
MS.gene032701.t1 | AT1G62085 | 28.736 | 174 | 110 | 5 | 361 | 534 | 270 | 429 | 2.47e-13 | 72.8 |
MS.gene032701.t1 | AT1G62085 | 28.736 | 174 | 110 | 5 | 361 | 534 | 270 | 429 | 2.47e-13 | 72.8 |
MS.gene032701.t1 | AT1G61960 | 21.981 | 414 | 255 | 14 | 142 | 502 | 6 | 404 | 2.74e-13 | 72.4 |
MS.gene032701.t1 | AT5G55580 | 27.333 | 150 | 106 | 3 | 322 | 468 | 223 | 372 | 5.40e-12 | 68.2 |
MS.gene032701.t1 | AT5G54180 | 24.194 | 310 | 213 | 12 | 223 | 522 | 192 | 489 | 9.49e-12 | 67.8 |
MS.gene032701.t1 | AT3G46950 | 24.603 | 378 | 249 | 13 | 137 | 503 | 48 | 400 | 1.72e-11 | 67.0 |
MS.gene032701.t1 | AT5G23930 | 31.624 | 117 | 78 | 2 | 387 | 503 | 288 | 402 | 5.67e-11 | 65.5 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAAGGAAATTGCATTTA+TGG | 0.115303 | 6.3:-40938 | MS.gene032701:CDS |
TGTTATGTTCTTTGAAAATA+TGG | 0.137547 | 6.3:-41458 | MS.gene032701:CDS |
GATGCCAAAATTAGAATTTC+TGG | 0.144550 | 6.3:-40869 | MS.gene032701:CDS |
TTCACCAGAAATTCTAATTT+TGG | 0.159132 | 6.3:+40865 | None:intergenic |
CTGCGGGGATCCCAATATTT+TGG | 0.192705 | 6.3:+46983 | None:intergenic |
AGAATTTGCTGCTGAATTTA+TGG | 0.206246 | 6.3:-40695 | MS.gene032701:CDS |
CTGGATATTCTCCAAAATAT+TGG | 0.247372 | 6.3:-46994 | MS.gene032701:CDS |
TAGTGTGAGCGGGAGGAAAA+AGG | 0.267324 | 6.3:+47241 | None:intergenic |
GGTAGAAAGTGTTAGGGATT+TGG | 0.286024 | 6.3:-47502 | MS.gene032701:CDS |
GCACGGTCTGTCCATGTCTT+TGG | 0.290233 | 6.3:+44795 | None:intergenic |
CAAAAGACAACCTCAACTAT+TGG | 0.292015 | 6.3:-44769 | MS.gene032701:CDS |
TACCTTCACGGAATATAAAA+AGG | 0.292325 | 6.3:+45924 | None:intergenic |
TCAACATTCCAGAGCAAAAT+AGG | 0.293006 | 6.3:+46928 | None:intergenic |
TAATAATAGCTGAGGACTTC+TGG | 0.325376 | 6.3:+44662 | None:intergenic |
AGAAGATAAAACCAAGATAT+CGG | 0.329241 | 6.3:-40777 | MS.gene032701:CDS |
GAATATCGAATGTAGCTTAA+AGG | 0.330400 | 6.3:-40740 | MS.gene032701:CDS |
ACATGTTGGTAGAAAGTGTT+AGG | 0.342505 | 6.3:-47509 | MS.gene032701:CDS |
TTCAACTTATCTTCAACAAA+TGG | 0.350696 | 6.3:-47586 | MS.gene032701:CDS |
ATTCAGTTCCTTAGGAGAAT+TGG | 0.352747 | 6.3:-41349 | MS.gene032701:CDS |
ATGTCAGACACAAGTAGTTC+TGG | 0.365444 | 6.3:+41286 | None:intergenic |
AGAGCAAGATTCAGTTCCTT+AGG | 0.365560 | 6.3:-41357 | MS.gene032701:CDS |
TAATCACATCTCATCTATAC+TGG | 0.369786 | 6.3:-47013 | MS.gene032701:CDS |
TTCTAAAGCTTACATTCCTT+TGG | 0.370275 | 6.3:-41323 | MS.gene032701:CDS |
TGGATATTCTCCAAAATATT+GGG | 0.384384 | 6.3:-46993 | MS.gene032701:CDS |
TCGCATCCCCAACATAATAT+TGG | 0.384825 | 6.3:-46959 | MS.gene032701:CDS |
GGAAAAGCCAATATTATGTT+GGG | 0.385050 | 6.3:+46952 | None:intergenic |
AAATACCTGTAGAAAGTCTT+CGG | 0.386329 | 6.3:+44632 | None:intergenic |
AAGCATTCAAGAGAACTATA+AGG | 0.404306 | 6.3:-45956 | MS.gene032701:CDS |
GAATTTGCTGCTGAATTTAT+GGG | 0.409909 | 6.3:-40694 | MS.gene032701:CDS |
AATACCTGTAGAAAGTCTTC+GGG | 0.414049 | 6.3:+44633 | None:intergenic |
CCTTTCAGAACCCGATATCT+TGG | 0.415637 | 6.3:+40766 | None:intergenic |
TCACTTCTCTTCTTCCATGC+TGG | 0.415823 | 6.3:-47478 | MS.gene032701:CDS |
AAAAGACAACCTCAACTATT+GGG | 0.416730 | 6.3:-44768 | MS.gene032701:CDS |
AACTAGCAAGCTGAAGTTGA+TGG | 0.435075 | 6.3:-44739 | MS.gene032701:CDS |
TCTACTTGGGTACAGCATAA+AGG | 0.438005 | 6.3:-40899 | MS.gene032701:CDS |
ACTCCTTCAAACTAGAGTTC+TGG | 0.442934 | 6.3:-46905 | MS.gene032701:CDS |
TCAACTTGAACTTTAACTAC+AGG | 0.444635 | 6.3:-47428 | MS.gene032701:CDS |
GTTATGTTCTTTGAAAATAT+GGG | 0.445605 | 6.3:-41457 | MS.gene032701:CDS |
GGGACATAGTAGTCTCTGAT+TGG | 0.453685 | 6.3:-47635 | MS.gene032701:CDS |
TCAACTTATCTTCAACAAAT+GGG | 0.455216 | 6.3:-47585 | MS.gene032701:CDS |
TTTCCTCTGAACTCCTAGTT+CGG | 0.462041 | 6.3:+44704 | None:intergenic |
AGGCCAGAACTCTAGTTTGA+AGG | 0.466029 | 6.3:+46902 | None:intergenic |
TGCTATTGATTCGGATTCCT+CGG | 0.469322 | 6.3:+47554 | None:intergenic |
GCTGCTGAATTTATGGGTGT+TGG | 0.474476 | 6.3:-40688 | MS.gene032701:CDS |
AATTTGGCGTACCTGGTTCA+AGG | 0.477280 | 6.3:+46882 | None:intergenic |
TGAGTTTGATGCTATTGATT+CGG | 0.480221 | 6.3:+47545 | None:intergenic |
GAAGATAAAACCAAGATATC+GGG | 0.481026 | 6.3:-40776 | MS.gene032701:CDS |
AGGAAAAGCCAATATTATGT+TGG | 0.485798 | 6.3:+46951 | None:intergenic |
AGTCTCTGATTGGGAACTGC+AGG | 0.486091 | 6.3:-47625 | MS.gene032701:CDS |
ATGTTGGGGATGCGATCTGC+GGG | 0.490612 | 6.3:+46967 | None:intergenic |
CATTCTAGGTTCCAAAGACA+TGG | 0.510075 | 6.3:-44806 | MS.gene032701:intron |
ACACTACAATCATACCTTCA+CGG | 0.512801 | 6.3:+45912 | None:intergenic |
CATCTAGTGAAATTGATAAG+TGG | 0.514953 | 6.3:+47172 | None:intergenic |
GGACATAGTAGTCTCTGATT+GGG | 0.517603 | 6.3:-47634 | MS.gene032701:CDS |
ATCTAGTGAAATTGATAAGT+GGG | 0.520056 | 6.3:+47173 | None:intergenic |
AGTGAATAGCTAAAATACCT+AGG | 0.521625 | 6.3:+40805 | None:intergenic |
TAGAAACACCAATTCTCCTA+AGG | 0.525753 | 6.3:+41341 | None:intergenic |
CTAGCTTACTTAGAGAGTCT+CGG | 0.531011 | 6.3:-47360 | MS.gene032701:CDS |
ACAAATGGGTGTGTCGGCCG+AGG | 0.532280 | 6.3:-47571 | MS.gene032701:CDS |
CTTCCTCAATGAATGTCGCC+AGG | 0.535977 | 6.3:-47326 | MS.gene032701:CDS |
GTAGATCAGTTTGCCGAACT+AGG | 0.537040 | 6.3:-44717 | MS.gene032701:CDS |
ACCAACATGTTGAGATATGC+TGG | 0.540717 | 6.3:+47522 | None:intergenic |
ATAACAATACCGTTGAGGTA+AGG | 0.541814 | 6.3:+41255 | None:intergenic |
TGAGGCGAATATTCTTGATA+AGG | 0.543511 | 6.3:+47202 | None:intergenic |
GATGCTAATGCTAATGATGT+TGG | 0.543989 | 6.3:-47456 | MS.gene032701:CDS |
TAACTTTGTTAATGAGAGAC+GGG | 0.545763 | 6.3:+47280 | None:intergenic |
ATGTAGCTTAAAGGATATGC+TGG | 0.546025 | 6.3:-40731 | MS.gene032701:CDS |
TAGAGTTCTGGCCTTGAACC+AGG | 0.547091 | 6.3:-46893 | MS.gene032701:intron |
CAACTTGAACTTTAACTACA+GGG | 0.547829 | 6.3:-47427 | MS.gene032701:CDS |
GTAACTTTGTTAATGAGAGA+CGG | 0.550712 | 6.3:+47279 | None:intergenic |
CTTCACATTGCAGCTCTCAA+AGG | 0.551295 | 6.3:-47396 | MS.gene032701:CDS |
CAGCTTATCATGTGAAGACA+CGG | 0.556678 | 6.3:+40645 | None:intergenic |
ATAGTGTACTTTATGAAGCT+AGG | 0.563671 | 6.3:-40967 | MS.gene032701:CDS |
TGATGAGTAGTGTGAGCGGG+AGG | 0.570194 | 6.3:+47234 | None:intergenic |
TAGTGATGAGTAGTGTGAGC+GGG | 0.571600 | 6.3:+47231 | None:intergenic |
GATATCGGGTTCTGAAAGGA+AGG | 0.571698 | 6.3:-40762 | MS.gene032701:CDS |
CCAAGATATCGGGTTCTGAA+AGG | 0.573170 | 6.3:-40766 | MS.gene032701:CDS |
GTGAATAGCTAAAATACCTA+GGG | 0.575252 | 6.3:+40806 | None:intergenic |
CATGTTGGTAGAAAGTGTTA+GGG | 0.576782 | 6.3:-47508 | MS.gene032701:CDS |
GGATACTTTCTGATAACCAA+AGG | 0.580282 | 6.3:+41307 | None:intergenic |
GTTGAACAACCCAATAGTTG+AGG | 0.591010 | 6.3:+44759 | None:intergenic |
TTCTGGTGAACTCAATGAAG+AGG | 0.597466 | 6.3:-40852 | MS.gene032701:CDS |
TTAACAAAACCTTACCTCAA+CGG | 0.600806 | 6.3:-41264 | MS.gene032701:intron |
AGACGGGAGGGTGTCAGCGG+AGG | 0.601376 | 6.3:+47296 | None:intergenic |
TCTTCAACAAATGGGTGTGT+CGG | 0.604330 | 6.3:-47577 | MS.gene032701:CDS |
GAAGCCCGAAGACTTTCTAC+AGG | 0.604401 | 6.3:-44637 | MS.gene032701:intron |
GAAATGATTCAATGAAGCAA+CGG | 0.605221 | 6.3:+47061 | None:intergenic |
GGTGAACTCAATGAAGAGGC+CGG | 0.608350 | 6.3:-40848 | MS.gene032701:CDS |
TTGATAAGTGGGTCATGATG+AGG | 0.611276 | 6.3:+47184 | None:intergenic |
GAAGCTAGGACTTTCAGAGA+AGG | 0.613527 | 6.3:-40953 | MS.gene032701:CDS |
TATGTTGGGGATGCGATCTG+CGG | 0.616027 | 6.3:+46966 | None:intergenic |
TGTTGATGCTAAAATATCCG+TGG | 0.618761 | 6.3:-45990 | MS.gene032701:CDS |
TTTGTTAATGAGAGACGGGA+GGG | 0.619589 | 6.3:+47284 | None:intergenic |
GAGAGACGGGAGGGTGTCAG+CGG | 0.621038 | 6.3:+47293 | None:intergenic |
GAAAAGGTTCAAGCAAGGCG+TGG | 0.622427 | 6.3:-47120 | MS.gene032701:CDS |
GAAGAGGCCGGTACGAGACG+TGG | 0.624003 | 6.3:-40836 | MS.gene032701:CDS |
TAGCTCACCACGTCTCGTAC+CGG | 0.626755 | 6.3:+40829 | None:intergenic |
TTGCCGAACTAGGAGTTCAG+AGG | 0.629209 | 6.3:-44707 | MS.gene032701:CDS |
GAAAAGCCAATATTATGTTG+GGG | 0.630240 | 6.3:+46953 | None:intergenic |
GTTGATGCTAAAATATCCGT+GGG | 0.632158 | 6.3:-45989 | MS.gene032701:CDS |
ACCAGCATATCTCAACATGT+TGG | 0.632521 | 6.3:-47523 | MS.gene032701:CDS |
GAGACGTGGTGAGCTACCCT+AGG | 0.632788 | 6.3:-40822 | MS.gene032701:CDS |
GTCAGCGGAGGATATATACC+TGG | 0.634286 | 6.3:+47308 | None:intergenic |
ATTAGCATTAGCATCCAGCA+TGG | 0.634999 | 6.3:+47464 | None:intergenic |
TCTGATTGGGAACTGCAGGA+AGG | 0.638520 | 6.3:-47621 | MS.gene032701:CDS |
GAATCATAACAATACCGTTG+AGG | 0.640993 | 6.3:+41250 | None:intergenic |
GGCTTCTGTAATAATAGCTG+AGG | 0.649008 | 6.3:+44654 | None:intergenic |
ATACCTGGCGACATTCATTG+AGG | 0.650039 | 6.3:+47323 | None:intergenic |
TTTATGCTGTACCCAAGTAG+AGG | 0.651825 | 6.3:+40901 | None:intergenic |
ACATTCCAGAGCAAAATAGG+AGG | 0.652429 | 6.3:+46931 | None:intergenic |
CTTTGTTAATGAGAGACGGG+AGG | 0.652659 | 6.3:+47283 | None:intergenic |
GCAGCTCTCAAAGGTGACAA+CGG | 0.668388 | 6.3:-47387 | MS.gene032701:CDS |
AAGGTTCAAGCAAGGCGTGG+AGG | 0.673259 | 6.3:-47117 | MS.gene032701:CDS |
AAGCAGCATCTTGAGAAGCG+AGG | 0.673782 | 6.3:+47085 | None:intergenic |
AGCTTATCATGTGAAGACAC+GGG | 0.683248 | 6.3:+40646 | None:intergenic |
ATAGTGATGAGTAGTGTGAG+CGG | 0.686698 | 6.3:+47230 | None:intergenic |
CATTCAAGAGAACTATAAGG+AGG | 0.687484 | 6.3:-45953 | MS.gene032701:CDS |
ACTTGGGTACAGCATAAAGG+AGG | 0.694799 | 6.3:-40896 | MS.gene032701:CDS |
ATGCTTGTAGATAGAACCCA+CGG | 0.695925 | 6.3:+45973 | None:intergenic |
TGTTGGGGATGCGATCTGCG+GGG | 0.717165 | 6.3:+46968 | None:intergenic |
AGTGATAACAAAAGTATACG+AGG | 0.730910 | 6.3:+47039 | None:intergenic |
TTATCATGTGAAGACACGGG+AGG | 0.751686 | 6.3:+40649 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 40646 | 47661 | 40646 | ID=MS.gene032701 |
chr6.3 | mRNA | 40646 | 47661 | 40646 | ID=MS.gene032701.t1;Parent=MS.gene032701 |
chr6.3 | exon | 46894 | 47661 | 46894 | ID=MS.gene032701.t1.exon1;Parent=MS.gene032701.t1 |
chr6.3 | CDS | 46894 | 47661 | 46894 | ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1 |
chr6.3 | exon | 45927 | 46040 | 45927 | ID=MS.gene032701.t1.exon2;Parent=MS.gene032701.t1 |
chr6.3 | CDS | 45927 | 46040 | 45927 | ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1 |
chr6.3 | exon | 44638 | 44820 | 44638 | ID=MS.gene032701.t1.exon3;Parent=MS.gene032701.t1 |
chr6.3 | CDS | 44638 | 44820 | 44638 | ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1 |
chr6.3 | exon | 41265 | 41482 | 41265 | ID=MS.gene032701.t1.exon4;Parent=MS.gene032701.t1 |
chr6.3 | CDS | 41265 | 41482 | 41265 | ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1 |
chr6.3 | exon | 40646 | 40990 | 40646 | ID=MS.gene032701.t1.exon5;Parent=MS.gene032701.t1 |
chr6.3 | CDS | 40646 | 40990 | 40646 | ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1 |
Gene Sequence |
Protein sequence |