AlfalfaGEDB | MS.gene032701

M. sativa cultivar XinJiangDaYe / MS.gene032701

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032701.t1	KEH24711.1	96.3	542	20	0	1	542	67	608	1.90E-211	745.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032701.t1	F4IHL3	44.4	54	30	0	468	521	539	592	2.9e-06	55.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032701.t1	A0A072U5S3	96.3	542	20	0	1	542	67	608	1.4e-211	745.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene032701.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032701.t1	MTR_6g003960	95.756	542	23	0	1	542	67	608	0.0	1060
MS.gene032701.t1	MTR_4g084630	27.331	311	190	4	217	525	46	322	2.76e-36	138
MS.gene032701.t1	MTR_4g070060	28.972	321	224	4	204	521	266	585	4.14e-34	137
MS.gene032701.t1	MTR_2g034600	30.469	256	173	3	267	521	292	543	1.88e-31	128
MS.gene032701.t1	MTR_2g034600	30.469	256	173	3	267	521	296	547	1.98e-31	128
MS.gene032701.t1	MTR_2g034600	30.469	256	173	3	267	521	231	482	2.41e-31	127
MS.gene032701.t1	MTR_5g041630	28.571	238	163	4	283	518	57	289	1.16e-24	104
MS.gene032701.t1	MTR_1g115415	25.970	335	242	6	197	527	124	456	1.89e-24	107
MS.gene032701.t1	MTR_5g068860	23.438	384	242	7	142	521	147	482	1.86e-23	104
MS.gene032701.t1	MTR_5g068860	26.009	223	156	5	284	501	140	358	1.07e-13	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032701.t1	AT1G78930	50.766	522	248	5	12	531	70	584	0.0	523
MS.gene032701.t1	AT4G38160	29.503	322	188	7	217	534	46	332	1.01e-36	140
MS.gene032701.t1	AT4G38160	30.351	313	180	6	217	525	46	324	1.26e-36	139
MS.gene032701.t1	AT4G38160	30.351	313	180	6	217	525	46	324	1.26e-36	139
MS.gene032701.t1	AT4G38160	30.124	322	186	7	217	534	46	332	3.58e-36	139
MS.gene032701.t1	AT2G21710	27.389	314	224	4	211	521	280	592	1.53e-31	129
MS.gene032701.t1	AT4G14605	27.612	268	182	5	255	521	211	467	6.64e-30	123
MS.gene032701.t1	AT4G14605	27.612	268	182	5	255	521	211	467	6.64e-30	123
MS.gene032701.t1	AT2G03050	31.276	243	157	6	283	521	32	268	3.69e-28	114
MS.gene032701.t1	AT2G03050	31.276	243	157	6	283	521	33	269	4.36e-28	114

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Find 122 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACAACCTCAACTATT+GGG	0.416730	6.3:-44768	MS.gene032701:CDS
AAATACCTGTAGAAAGTCTT+CGG	0.386329	6.3:+44632	None:intergenic
AACTAGCAAGCTGAAGTTGA+TGG	0.435075	6.3:-44739	MS.gene032701:CDS
AAGCAGCATCTTGAGAAGCG+AGG	0.673782	6.3:+47085	None:intergenic
AAGCATTCAAGAGAACTATA+AGG	0.404306	6.3:-45956	MS.gene032701:CDS
AAGGTTCAAGCAAGGCGTGG+AGG	0.673259	6.3:-47117	MS.gene032701:CDS
AATACCTGTAGAAAGTCTTC+GGG	0.414049	6.3:+44633	None:intergenic
AATTTGGCGTACCTGGTTCA+AGG	0.477280	6.3:+46882	None:intergenic
ACAAATGGGTGTGTCGGCCG+AGG	0.532280	6.3:-47571	MS.gene032701:CDS
ACACTACAATCATACCTTCA+CGG	0.512801	6.3:+45912	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	40646	47661	40646	ID=MS.gene032701
chr6.3	mRNA	40646	47661	40646	ID=MS.gene032701.t1;Parent=MS.gene032701
chr6.3	exon	46894	47661	46894	ID=MS.gene032701.t1.exon1;Parent=MS.gene032701.t1
chr6.3	CDS	46894	47661	46894	ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1
chr6.3	exon	45927	46040	45927	ID=MS.gene032701.t1.exon2;Parent=MS.gene032701.t1
chr6.3	CDS	45927	46040	45927	ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1
chr6.3	exon	44638	44820	44638	ID=MS.gene032701.t1.exon3;Parent=MS.gene032701.t1
chr6.3	CDS	44638	44820	44638	ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1
chr6.3	exon	41265	41482	41265	ID=MS.gene032701.t1.exon4;Parent=MS.gene032701.t1
chr6.3	CDS	41265	41482	41265	ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1
chr6.3	exon	40646	40990	40646	ID=MS.gene032701.t1.exon5;Parent=MS.gene032701.t1
chr6.3	CDS	40646	40990	40646	ID=cds.MS.gene032701.t1;Parent=MS.gene032701.t1

Gene Sequence

>MS.gene032701

ATGAGGGACATAGTAGTCTCTGATTGGGAACTGCAGGAAGGTCGAATCGCAGTTTCAACTTATCTTCAACAAATGGGTGTGTCGGCCGAGGAATCCGAATCAATAGCATCAAACTCACCAGCATATCTCAACATGTTGGTAGAAAGTGTTAGGGATTTGGATCACTTCTCTTCTTCCATGCTGGATGCTAATGCTAATGATGTTGGTGTGTTCAACTTGAACTTTAACTACAGGGACAAGATTCTTCACATTGCAGCTCTCAAAGGTGACAACGGCAAACTAGCTTACTTAGAGAGTCTCGGCTTCACACTCTCTTCCTCAATGAATGTCGCCAGGTATATATCCTCCGCTGACACCCTCCCGTCTCTCATTAACAAAGTTACCTCTATCAAACAACTCCTTTTTCCTCCCGCTCACACTACTCATCACTATCAACTCCTTATCAAGAATATTCGCCTCATCATGACCCACTTATCAATTTCACTAGATGAAGATATGCAACACACTTTCTCCTTTTTCGAAAAGGTTCAAGCAAGGCGTGGAGGTTTAAATATCCTCGCTTCTCAAGATGCTGCTTTCCGTTGCTTCATTGAATCATTTCCTCGTATACTTTTGTTATCACTAAATAATCACATCTCATCTATACTGGATATTCTCCAAAATATTGGGATCCCCGCAGATCGCATCCCCAACATAATATTGGCTTTTCCTCCTATTTTGCTCTGGAATGTTGAACTCCTTCAAACTAGAGTTCTGGCCTTGAACCAGGTACGCCAAATTTTTCTTTCTTTCCGAACAAAGTGCATTGTGATGTTTATAGGATTTCATTCTTCTTTGCCTGAAAACTGCATTTTTGGTGCTATGTTGTTTTCTCTCAACTATCGACGTTGAGAATAAAATAAGCGCATCGAAGATGATGATGTTGTGTCGGATGTGTGGTTAGACTAGATGACATAAGATTAGAAAGGACAACATTAGAGATAGAGTGAGAGAGAAAAGATGGTGGAAAGATGTTGGGGGTAGCACCTATAGTGAAAGATGGTGGAAAATAGACTTAGGTGGTTTGGGCATGTAGAGGAGAAACCTGGAGATTATGTAGTAACGAGAGTAGATCAGAGTTAGATCACTAGAGGCAGAGGAAGACCTAGAAAAACTATAAGAGAAACCATTAAGAAAGATCTAAAGATTAATGAGTTGGATTGAAATATGGTTTTTGATAGAACATTATGGCGTAATTTGATCCATGCAGCCGACCCCACTTCGTGGGATAAGACTTGGTTGTTGTTGTTGTTTCTGTTGGCTCTGCAATGTCTACAACAGAATAAATTAATAGTTTACAATAGTTTGTAACTAAAAAATAACAGAAACTAACTGAATTACTGTTTGTAGAAGTTTCCAGAAGTATTCAAAAGTAGAAGACTTAAAACTTTTATTGTAGAATTAAAACTAAGTTACAGAGTTGTGTGACATAATTTAGGCAGACAGATCACTCACAATTTGATTTCCCCATTCTCAGCGGCTATCATATCTTCTTTTTGCTCAGAATTAAATGCCAACATGATCTTAATTATAATATCACTTGCTACCTTTAACTAATAAGTTAATAATTGATTTTTTGTAGATTGACGGTGTGGATAAAGATTATGCCATGTTGATGCTAAAATATCCGTGGGTTCTATCTACAAGCATTCAAGAGAACTATAAGGAGGTCCTTGCCTTTTTATATTCCGTGAAGGTATGATTGTAGTGTCATGAGTGCTTGTGGCCATATAATTTTGCGTTTATGTGTATCTGTATTTAGGCAAGTTGATTGTTACTAAAAGAAAACTATGGAGACTACTTTGAATTGTTGTTCCAAAATAATTTGATCCCTAGGAAATATATTCTACAGTAAATTGAGCAGCCCTATGTACAAGATAACTTGAAATAGAACTAATGCATTATATTTAAGAAGTTTAATAATCTTGTTTACAGTTGTAAAGCATGGTCGTATGGCTGAAGTCAAATTGGTGTACATGCCAGGCAATCACTACCACCATAAGATATACCTATGTGTATGTTAAATGTAATGCTTGAAACTTCGTTGTAAATATTAAAATATTAATTGGGCACTTGTTCTTGAAATATAAGAAAGTTGTAGCAAGTTATTGGTGGTAAAATAATTTCAAGATTAAAGAAAAATGTTTTATTAGGCTAGATTTCGGGGCTGAGTTATGCCTTGCATAAATCCTAAGATGGTACCAATAACTATCCTATATTTGCATGTTAGGCCTCCATAGATGTCCTGTCCTGCAAACTTTGCGCTCTAGATGTCCAATTTTGGCGTAAGAGGGGTGTATTGAGATCCCATATTAAGTAGAGACATGGCTAAAGTAGTTCTTACTAGTCTTGAGTAGTCATCACTCCTTGAGCTAGCTTATGAGGTTAAGTTAGGCCTATCCCAAATTATTCTACTATTTGGTTTTTTTTCACAACAGCCCCCAAGCCTTACCAACTAGGTGAAACCGGCTACTTGGATCAAACGTCGCCATAATGTTCTATTGTGAATCATATCTGTGGCCAAACCATTGACTCAGAAGGCCCAAAAACACTAATCGGAGAAAATCAACACGGCTAAATCTGCACACTTCCTTATGATTATGGCTGATGGCTTGGTCCTTTTGCTGCCTTATTAAGAGTCCAATTTATTTCACATGCATATGCATGTTGCTTTTGAAAAATAAAATGTTTTTGGTATATGTGGTGGTAGTGGGTAAGGTAGGTATGAAAGACATATTTCATTAGTTTGGTTAGAAGACTGATTTGCAGAAGCACAAGACTAATAATATTGTTTCATTCTAGGTTCCAAAGACATGGACAGACCGTGCAATCAAAAGACAACCTCAACTATTGGGTTGTTCAACTAGCAAGCTGAAGTTGATGGTAGATCAGTTTGCCGAACTAGGAGTTCAGAGGAAAAAGTTGTATCAGGTTATCACCAGAAGTCCTCAGCTATTATTACAGAAGCCCGAAGACTTTCTACAGGTATTTTTCTTTTGCTCTAATCAAGTGTATATGATATACGATAGAGATGTTTTACAAGTATTTATTACAATTTGAGCAGAGGAGAAAATGCAGGAAAGCAATAATATAAAGTAGAGAAAAATTTGGAGAGTTTGAAGAGAATATGTTTGAAACTGAATCAATTAATTTCAAAAGAATTAGTGAGTGACCTATTTATAGTGGTCTACTTCAGATCAATTAGATTTGAGCTACCTAACCGATGATGCCAGAATTTTGTCAATAACAATTTGACATGTGACTAATATGGCGTCTGAAAGGCACACTAGCCAAATAGCTTTCTACACACAACGACCAATATGAGACTACACCCTAACGATGTCCCCTCAAACTCAAGGTGGTTGAGCAAGCGCAAACTTGTCAAACACCTAAAGTATGTCTGGAAGAGCAAATGAACCACCGTTTGCAGAGAGGCTTTGTGGGGGAAATCAGCATTCTGATCAGTAGTAGGAATATGGTGAACTATGAAGTTCTGGCTTAGAACCTTCTCTAGCACAAAGATGTCAAGTTCCAGAGGAAGAGCACTGGACTGTGTGATAAGGAGAGACTGTACCCGAGTTGTCACAGAAAGTAATTTGGGTCTGGAAGGGAGTTTTCAGCTCAGTAAGCAAAGACTGCACCCACAGAATATTTGCACCACTATTGGCAAGGTTTAACCTGTCTCATTGTTTTTTGGACCTTCATGATAATAAACTGGGTCCAAGATAAATGCTCGACTCAGAAGTGCAGTCAGTCCCATCTGGGTCTGATCCCCTGCCAGAGTCATTGAAGACAATTATAGAAATGGGCTGTCGAGCAGGGGCAGGTTTCACAGGAGGCCATGACAGACCACCCCTTTTGGTTATCAAAGTTGTTGGAAATTCCGCCTTTATTGCGTCCACCCCTAGTCACCTAATTGCGGCATTTAAGTTGCCTTCATTGCAGTCTCCAACACCTTCATTTTGTTGGCTTTGAGGGGGTGGATTTAGTCCCACATCGGATAGATAAGACTCTTGATAAGAGCTTATAAAGACGAGGCACTCCTCAACTTACAAGACAGTTTTGTAAGGATGAGTTAGGCCCAATTCCCACTGTCAAACTGGTTTCTGGAATCGTGACATTCTGGAGTGCTCCAATAATAGACCAATATAGAGTAAGGGTCTGAAAGGGTCTGAAACATAGTTAGCTCAAACTTTTTCAGTTTGATGTTACCAACTAATAACTATAGAGGTTGAGATCTCAATGGCATCTCCCGTTTATCCTTAGACAGAAGATCACACATATATTTGTATTAAGAGAGCTGAAGAGAACCATTCTTGAGATATTAGACTTCAATTCCTGGGAAATAATCAAAGGCTTCAAGATATTAGATCTCAAAGGTTTATAAAGACGAGGCACTCCTCACCTTACAAGCCGGTTTCGTAAGGATGAGTTAGGCCCAATTCCCACTGTCAAACTGGTTTCTGGAATCATGATATACTGTAGTGCTCCAATAATAGACCGATAAAGAGTATGGGAAATAATCAAAGGCTTCAAGATGATCATAAGAGCAAACTGTGATTTTACTAGTATTGAGGAGAATTATTAAATTAAAAAGGCCCAATTCCCACTGTCAAACTGGTTTCTGGAATCGTGATATACTGGAGTGCTCCAATAATAGACCGATAAAGAGTATGGGAAATAATCAAAGGCTTTAAGATGATCATAAGAGCAAACTGTGATTTTACTAGTATTGAGGAGAAACTTGTCAAAAGAATATATGTTTAGTTACAATTTATAATTTGTTGTGTTTAGTTATTGAGCAACAAGAACATTTAACAGTATATTACAGTATCAGACTAGGCATACATCTCCGATGTTTCACAAGAAATCACATCTTTGTGGTTATACATACATGAGTTTAAATTAAATGATACTTTAAATTATGTCACAAGAATGCATTTATTGATTGACACTTGTAAAAAATTGTCTTGAAAGTGTTCTCTTGGTGTGTATATTATTAAGATTATTATGGTAAGACTAAGATCAAGATAAAATTAAAATAAGATTAAAATACATTTATTTTTTCCTGAGGATATTTATGTAATTTCATAAACCAAACAATGCCTAACTCTATTAATGGCAAAAATGCAAATAAGTGACAAAGGTGATGTCTTTTAAATTAAATGATGTTTTAAGGTGATGTGACAACAATGCATTTGTTGATTGACACTTGTAAAAAAATTGTCTTGAAAGTATTCTCTGTGTATATTATTAAGAAGTCTAGAGATGAGCTGCTGAATGAGAGGAGTCACATGATATCATCAACATAACCCGGGGTCTGAGATTTGAAAATGGTACTTTGTGAAGCATATCAAAGCTAGAAATAATTACCAGTCATGATGCACAGATAATCCGAAATTATCTATTTCCCACCCTCAGCATATTCCCACTCTTGCAATCTTGTTTACCTCAAAACCATTACACAATAGCCAAAACGTTACAATTTAGGGAAATGCCCAAATGTTACTTCTGTTGGTCAGTTATGTCCAAAACATTAACCCTCCGTCAATTTGTGTATTAAACATTCATTTTGGTCCTCGAAAGAAAATGTAATTTTAGATCTTAGTCCTTCACCTTCTCTCACTCTTTTCTTTTCTCCTTCTTCCCCTTTGTCTCTTTCTTTACTATGATGGCACTATAGTTTATGCATCTCCTGCAAACCAACAGTGAAGCAATAGCTCTACAAATCATTTTGAAATTTCCAGTCACAGGACAAAAAACTTTATTAGAATTACATTGTAAGACAACCAATACTACAAGCATAAGCTAAAGATTAGTTAGAACCATTCCTGCTTTAGGTTTTGCATGATCGTCTCATGTTTAAAATGCTAATTGAGCTTGCCTTAAAATTTCAACAAACAAATGTATTATTAAACCAACAGTACTTAAGTTTCCTTCATGATGTAAACAATGCTTACCTAAAAAATTGCAGCACTAAAGAAAGTTGCTTGAAAAAAATATAAGTCTGGAATCGGTTGTTGTTAAAATTGTTTTATTTTTTTATTTTTAAATAACTGCAAATGGTTTTCTGTTATATTTATCAGTGTTGCTTCATTTATTTGTTTACACAATAAGCTCTTGGTCATTGTTGTCTACAGGTTGTTATGTTCTTTGAAAATATGGGTTTTGATAAAGAAAATATTGGGAGAATACTTGCTCGCTGCCCTGAAATTTTTGCCACCAGCATTAGTAAAACTTTACAGAGCAAGATTCAGTTCCTTAGGAGAATTGGTGTTTCTAAAGCTTACATTCCTTTGGTTATCAGAAAGTATCCAGAACTACTTGTGTCTGACATTAACAAAACCTTACCTCAACGGTATTGTTATGATTCATCACATTTTTTTGTCTATTGTTCTTTAAGTATCATATTCTCTTTTGTCTGTTGTTCTTTAAGTATCATATTTCTTAACTCACCCAATCATTTTTGGGCAGTGAGTATTTACTATTCTAAAATAATGCAGTGATTTAGATTTTAGAAAAATGTCATGAAGTTTTTTTTCTTCTCCAATAGTAATAGAATGATTCATGTGTCATTCTATTGACCAACCATCTAACTGATCATTTGATTTTGATATGTTGATGTTCTGCAGGATAGTGTACTTTATGAAGCTAGGACTTTCAGAGAAGGAAATTGCATTTATGGTACGTACATTTTCTCCTCTACTTGGGTACAGCATAAAGGAGGTTCTGATGCCAAAATTAGAATTTCTGGTGAACTCAATGAAGAGGCCGGTACGAGACGTGGTGAGCTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAACCAAGATATCGGGTTCTGAAAGGAAGGAATATCGAATGTAGCTTAAAGGATATGCTGGCAAAAAATGATGAAGAATTTGCTGCTGAATTTATGGGTGTTGGAAAGATGCTCGTCTGTCCTCCCGTGTCTTCACATGATAAGCT

Protein sequence

>MS.gene032701.t1

MRDIVVSDWELQEGRIAVSTYLQQMGVSAEESESIASNSPAYLNMLVESVRDLDHFSSSMLDANANDVGVFNLNFNYRDKILHIAALKGDNGKLAYLESLGFTLSSSMNVARYISSADTLPSLINKVTSIKQLLFPPAHTTHHYQLLIKNIRLIMTHLSISLDEDMQHTFSFFEKVQARRGGLNILASQDAAFRCFIESFPRILLLSLNNHISSILDILQNIGIPADRIPNIILAFPPILLWNVELLQTRVLALNQIDGVDKDYAMLMLKYPWVLSTSIQENYKEVLAFLYSVKVPKTWTDRAIKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRSPQLLLQKPEDFLQVVMFFENMGFDKENIGRILARCPEIFATSISKTLQSKIQFLRRIGVSKAYIPLVIRKYPELLVSDINKTLPQRIVYFMKLGLSEKEIAFMVRTFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDVVSYPRYFSYSLEKKIKPRYRVLKGRNIECSLKDMLAKNDEEFAAEFMGVGKMLVCPPVSSHDK