AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032792.t1 MTR_7g074790 81.461 178 15 1 1 178 1 160 2.40e-101 295
MS.gene032792.t1 MTR_5g039760 56.796 206 64 2 1 205 1 182 7.05e-75 226
MS.gene032792.t1 MTR_7g061980 62.185 119 45 0 1 119 1 119 1.34e-46 151
MS.gene032792.t1 MTR_0558s0020 32.246 276 157 6 2 257 31 296 1.26e-38 136
MS.gene032792.t1 MTR_6g051425 29.752 242 158 5 9 240 13 252 2.01e-32 121
MS.gene032792.t1 MTR_0402s0040 37.438 203 115 6 10 204 26 224 4.69e-32 123
MS.gene032792.t1 MTR_8g446020 31.154 260 142 6 2 257 30 256 1.75e-30 114
MS.gene032792.t1 MTR_6g090505 32.227 211 128 3 45 240 11 221 2.00e-26 105
MS.gene032792.t1 MTR_1g083640 27.869 244 153 5 2 225 46 286 3.08e-26 103
MS.gene032792.t1 MTR_4g102720 32.353 170 81 2 6 175 3 138 2.88e-24 97.4
MS.gene032792.t1 MTR_1g070355 27.826 230 159 4 15 240 79 305 8.59e-23 97.4
MS.gene032792.t1 MTR_4g069880 52.941 68 32 0 1 68 1 68 5.18e-18 76.3
MS.gene032792.t1 MTR_5g076070 23.913 230 170 3 12 238 55 282 7.66e-18 81.3
MS.gene032792.t1 MTR_5g015480 35.065 154 89 4 10 160 56 201 4.32e-17 79.0
MS.gene032792.t1 MTR_0337s0040 28.440 218 129 4 4 217 30 224 6.85e-17 77.4
MS.gene032792.t1 MTR_2g014100 26.667 210 131 5 2 191 39 245 7.87e-17 77.8
MS.gene032792.t1 MTR_1g013060 30.374 214 142 5 1 208 15 227 7.93e-16 74.7
MS.gene032792.t1 MTR_1g019850 34.043 141 84 3 3 141 63 196 9.02e-16 74.7
MS.gene032792.t1 MTR_4g035820 27.386 241 160 7 10 240 75 310 9.87e-16 77.0
MS.gene032792.t1 MTR_7g446520 25.551 227 154 2 14 240 92 303 1.31e-14 72.8
MS.gene032792.t1 MTR_2g099430 40.594 101 56 3 22 119 13 112 3.44e-14 67.4
MS.gene032792.t1 MTR_7g446510 29.221 154 109 0 87 240 158 311 1.86e-12 66.6
MS.gene032792.t1 MTR_7g446480 29.221 154 109 0 87 240 143 296 2.49e-12 65.9
MS.gene032792.t1 MTR_2g098880 36.441 118 64 4 2 112 53 166 6.55e-12 64.3
MS.gene032792.t1 MTR_6g022080 28.289 152 104 4 16 163 91 241 6.61e-12 63.9
MS.gene032792.t1 MTR_2g098880 36.441 118 64 4 2 112 65 178 7.30e-12 64.3
MS.gene032792.t1 MTR_0856s0010 32.353 102 65 2 8 108 32 130 1.05e-11 62.0
MS.gene032792.t1 MTR_2g070590 36.538 104 62 3 10 110 17 119 1.28e-11 60.8
MS.gene032792.t1 MTR_7g113010 36.154 130 61 4 10 134 457 569 1.46e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032792.t1 AT4G38180 35.857 251 153 5 7 253 70 316 4.50e-42 153
MS.gene032792.t1 AT4G15090 31.818 242 160 5 3 241 44 283 2.10e-29 117
MS.gene032792.t1 AT4G15090 31.818 242 160 5 3 241 44 283 2.10e-29 117
MS.gene032792.t1 AT4G15090 31.818 242 160 5 3 241 44 283 2.10e-29 117
MS.gene032792.t1 AT4G15090 31.818 242 160 5 3 241 44 283 2.10e-29 117
MS.gene032792.t1 AT4G15090 31.818 242 160 5 3 241 44 283 2.10e-29 117
MS.gene032792.t1 AT1G76320 31.048 248 152 8 14 257 1 233 2.01e-24 102
MS.gene032792.t1 AT1G76320 31.048 248 152 8 14 257 1 233 2.01e-24 102
MS.gene032792.t1 AT1G76320 31.048 248 152 8 14 257 1 233 2.08e-24 102
MS.gene032792.t1 AT1G76320 31.048 248 152 8 14 257 1 233 2.21e-24 102
MS.gene032792.t1 AT2G27110 31.984 247 135 8 9 253 48 263 6.45e-23 98.2
MS.gene032792.t1 AT2G27110 31.984 247 135 8 9 253 48 263 6.45e-23 98.2
MS.gene032792.t1 AT3G22170 25.475 263 156 6 9 257 69 305 1.11e-19 88.6
MS.gene032792.t1 AT3G22170 25.475 263 156 6 9 257 69 305 1.11e-19 88.6
MS.gene032792.t1 AT3G06250 27.778 234 127 5 9 240 189 382 3.33e-19 87.0
MS.gene032792.t1 AT3G06250 27.778 234 127 5 9 240 189 382 3.33e-19 87.0
MS.gene032792.t1 AT3G06250 27.778 234 127 5 9 240 189 382 3.33e-19 87.0
MS.gene032792.t1 AT5G28530 25.301 249 168 5 10 242 55 301 7.02e-19 86.3
MS.gene032792.t1 AT5G28530 25.301 249 168 5 10 242 55 301 7.02e-19 86.3
MS.gene032792.t1 AT5G28530 25.301 249 168 5 10 242 55 301 7.03e-19 86.3
MS.gene032792.t1 AT5G18960 26.582 237 129 7 9 240 210 406 2.66e-16 78.6
MS.gene032792.t1 AT5G18960 37.500 104 49 3 9 110 42 131 4.62e-11 63.2
MS.gene032792.t1 AT5G18960 26.582 237 129 7 9 240 210 406 2.66e-16 78.6
MS.gene032792.t1 AT5G18960 37.500 104 49 3 9 110 42 131 4.62e-11 63.2
MS.gene032792.t1 AT1G10240 26.357 258 169 8 10 257 48 294 4.22e-16 78.2
MS.gene032792.t1 AT1G10240 26.357 258 169 8 10 257 48 294 4.22e-16 78.2
MS.gene032792.t1 AT1G52520 27.059 255 158 10 10 257 85 318 1.52e-15 76.3
MS.gene032792.t1 AT2G27110 40.230 87 49 1 167 253 35 118 1.69e-12 67.4
MS.gene032792.t1 AT1G80010 25.306 245 168 5 9 244 94 332 1.82e-12 67.4
MS.gene032792.t1 AT5G28530 25.749 167 119 2 10 171 55 221 1.10e-11 64.7
MS.gene032792.t1 AT5G28530 25.749 167 119 2 10 171 55 221 1.22e-11 64.7

Find 47 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGGATTACGGGTATTT+TGG 0.199963 5.2:+28628218 MS.gene032792:CDS
ATTACACTTTCAAGTGAAAA+TGG 0.237644 5.2:+28627810 MS.gene032792:CDS
AAAACCAATGGTGGTGCCTT+TGG 0.312539 5.2:+28629261 MS.gene032792:CDS
GCAAATATGATCTTGGATTA+CGG 0.363189 5.2:+28628209 MS.gene032792:CDS
TGGCCGATGACTCTGGATTA+AGG 0.372007 5.2:+28627952 MS.gene032792:CDS
TGACTTCTTCAAATGATGAT+TGG 0.385489 5.2:+28627550 MS.gene032792:CDS
GGAAGGAATACGGAAGAAAA+AGG 0.394338 5.2:+28627725 MS.gene032792:CDS
TCAAATTTCATTCCATGTCT+TGG 0.397028 5.2:-28627576 None:intergenic
TTCAAGTGAAAATGGAAAGT+TGG 0.416461 5.2:+28627818 MS.gene032792:CDS
CAAATATGATCTTGGATTAC+GGG 0.429366 5.2:+28628210 MS.gene032792:CDS
ATGTAGGTTTGTTTGTTGTA+AGG 0.436082 5.2:+28627704 MS.gene032792:CDS
AAACCAATGGTGGTGCCTTT+GGG 0.439748 5.2:+28629262 MS.gene032792:CDS
AACAGATTACAAATGTGTTC+TGG 0.440124 5.2:+28628180 MS.gene032792:CDS
TATGCTTTACGTGAGGGCTT+CGG 0.441084 5.2:+28627633 MS.gene032792:CDS
TTAGAGTACGCTTTACAAAC+AGG 0.450669 5.2:+28627658 MS.gene032792:CDS
CATCCCAAAGGCACCACCAT+TGG 0.455308 5.2:-28629265 None:intergenic
ATTGATATGGCCGATGACTC+TGG 0.457637 5.2:+28627945 MS.gene032792:CDS
ACAAGCATATGAGATTGATA+TGG 0.463781 5.2:+28627932 MS.gene032792:CDS
TCTCTCGATTTAGTAGATCA+TGG 0.467068 5.2:-28627869 None:intergenic
AGGTTTGTTTGTTGTAAGGA+AGG 0.486878 5.2:+28627708 MS.gene032792:CDS
TTTGTTGTAAGGAAGGAATA+CGG 0.490669 5.2:+28627715 MS.gene032792:CDS
CTTGCTTATGCTTTACGTGA+GGG 0.500228 5.2:+28627627 MS.gene032792:CDS
AGACAAAGAAGTATGGTGTA+TGG 0.509015 5.2:+28628071 MS.gene032792:CDS
GTGTGATGCAAATATGATCT+TGG 0.513255 5.2:+28628202 MS.gene032792:CDS
AAGGATAAATGTGCATATGA+AGG 0.516778 5.2:+28627744 MS.gene032792:CDS
CTCTCGATTTAGTAGATCAT+GGG 0.519266 5.2:-28627868 None:intergenic
GAAATTTGACACTAGAGAAG+AGG 0.533865 5.2:+28627590 MS.gene032792:CDS
ATAAAGCTTACTAAGATATG+TGG 0.540018 5.2:-28628261 None:intergenic
ACGGTAGTGTATCGTCATGT+AGG 0.541762 5.2:+28627688 MS.gene032792:CDS
CAACTTATGAGCACACATGC+AGG 0.548940 5.2:+28627990 MS.gene032792:CDS
TCTTGCTTATGCTTTACGTG+AGG 0.552494 5.2:+28627626 MS.gene032792:CDS
CATCTGATATGCATAAAAGA+AGG 0.552576 5.2:-28628147 None:intergenic
GATTTAGTAGATCATGGGTA+TGG 0.554426 5.2:-28627863 None:intergenic
CTGCCTTAATCCAGAGTCAT+CGG 0.562647 5.2:-28627955 None:intergenic
GCAGGGCATAGCGCTAATGT+TGG 0.568818 5.2:+28628008 MS.gene032792:CDS
GATGATTGGAAGCCAAGACA+TGG 0.587035 5.2:+28627564 MS.gene032792:CDS
AACTTATGAGCACACATGCA+GGG 0.596381 5.2:+28627991 MS.gene032792:CDS
GTGGTTGTAGGTCATGGCTG+TGG 0.602078 5.2:+28629229 MS.gene032792:intron
CGCTAATGTTGGATTTACAG+AGG 0.620951 5.2:+28628019 MS.gene032792:CDS
TTGTAGGTCATGGCTGTGGA+CGG 0.621638 5.2:+28629233 MS.gene032792:intron
TGACTCTGGATTAAGGCAGA+AGG 0.626414 5.2:+28627959 MS.gene032792:CDS
GCGACGCCTCTTCATCCCAA+AGG 0.635512 5.2:-28629277 None:intergenic
AGTATGGTGTATGGTGACGC+TGG 0.653676 5.2:+28628080 MS.gene032792:CDS
TGGACGGCGAAGAAAACCAA+TGG 0.666412 5.2:+28629249 MS.gene032792:CDS
TAATGTTGGATTTACAGAGG+TGG 0.672534 5.2:+28628022 MS.gene032792:CDS
TTTACAAACAGGAAGAAAGA+CGG 0.687186 5.2:+28627669 MS.gene032792:CDS
ACGGCGAAGAAAACCAATGG+TGG 0.711693 5.2:+28629252 MS.gene032792:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATGATTTCATTGA+TGG + chr5.2:28629027-28629046 MS.gene032792:intron 15.0%
!! TATTTGTTTACTTATACTTT+GGG - chr5.2:28628533-28628552 None:intergenic 15.0%
!! AATGTTAGAAATAAGAGTTT+GGG - chr5.2:28628417-28628436 None:intergenic 20.0%
!! ATTGTTAATTGCAATTACAA+AGG + chr5.2:28628378-28628397 MS.gene032792:intron 20.0%
!! GATTAAGCTATTATGTAATT+TGG - chr5.2:28629084-28629103 None:intergenic 20.0%
!! GTATTTGTTTACTTATACTT+TGG - chr5.2:28628534-28628553 None:intergenic 20.0%
!! TTCAATTTCAAAACATTGTA+AGG + chr5.2:28628597-28628616 MS.gene032792:intron 20.0%
! ATAAAGCTTACTAAGATATG+TGG - chr5.2:28628264-28628283 None:intergenic 25.0%
! CAATGTTAGAAATAAGAGTT+TGG - chr5.2:28628418-28628437 None:intergenic 25.0%
! TACAAAAAGACAAAGAAGTA+TGG + chr5.2:28628064-28628083 MS.gene032792:CDS 25.0%
! TCATGATTTCTTCATAACAA+TGG - chr5.2:28628975-28628994 None:intergenic 25.0%
! TTACTCTTGATTGAAAACAA+TGG - chr5.2:28628952-28628971 None:intergenic 25.0%
! TTGATTGAAAACAATGGTAT+TGG - chr5.2:28628946-28628965 None:intergenic 25.0%
!! ATTACACTTTCAAGTGAAAA+TGG + chr5.2:28627810-28627829 MS.gene032792:CDS 25.0%
!!! CAAACTCTTATTTCTAACAT+TGG + chr5.2:28628416-28628435 MS.gene032792:intron 25.0%
AACAGATTACAAATGTGTTC+TGG + chr5.2:28628180-28628199 MS.gene032792:CDS 30.0%
AAGGATAAATGTGCATATGA+AGG + chr5.2:28627744-28627763 MS.gene032792:CDS 30.0%
ACAAGCATATGAGATTGATA+TGG + chr5.2:28627932-28627951 MS.gene032792:CDS 30.0%
ACCAAAATAACAACCTGAAA+AGG + chr5.2:28628312-28628331 MS.gene032792:intron 30.0%
CAAATATGATCTTGGATTAC+GGG + chr5.2:28628210-28628229 MS.gene032792:CDS 30.0%
CATCTGATATGCATAAAAGA+AGG - chr5.2:28628150-28628169 None:intergenic 30.0%
GCAAATATGATCTTGGATTA+CGG + chr5.2:28628209-28628228 MS.gene032792:CDS 30.0%
GTGCATATGAAGGAAAAATT+CGG + chr5.2:28627754-28627773 MS.gene032792:CDS 30.0%
TCAAATTTCATTCCATGTCT+TGG - chr5.2:28627579-28627598 None:intergenic 30.0%
TGACTTCTTCAAATGATGAT+TGG + chr5.2:28627550-28627569 MS.gene032792:CDS 30.0%
TTCAAGTGAAAATGGAAAGT+TGG + chr5.2:28627818-28627837 MS.gene032792:CDS 30.0%
TTTACAAACAGGAAGAAAGA+CGG + chr5.2:28627669-28627688 MS.gene032792:CDS 30.0%
! CTTCTTTTATGCATATCAGA+TGG + chr5.2:28628148-28628167 MS.gene032792:CDS 30.0%
! TTTGTTGTAAGGAAGGAATA+CGG + chr5.2:28627715-28627734 MS.gene032792:CDS 30.0%
!! ATGTAGGTTTGTTTGTTGTA+AGG + chr5.2:28627704-28627723 MS.gene032792:CDS 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG - chr5.2:28628312-28628331 None:intergenic 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG - chr5.2:28628313-28628332 None:intergenic 30.0%
ATAACGATCTAAGCCTTCTT+TGG + chr5.2:28629144-28629163 MS.gene032792:intron 35.0%
ATCAATTTGAACAGGAAGAC+AGG - chr5.2:28629196-28629215 None:intergenic 35.0%
CTAACTGATTAAGAGACCAA+TGG + chr5.2:28628669-28628688 MS.gene032792:intron 35.0%
CTCTCGATTTAGTAGATCAT+GGG - chr5.2:28627871-28627890 None:intergenic 35.0%
CTGTTCAAATTGATGTTCGA+CGG + chr5.2:28629202-28629221 MS.gene032792:intron 35.0%
GAAATTTGACACTAGAGAAG+AGG + chr5.2:28627590-28627609 MS.gene032792:CDS 35.0%
GATTTAGTAGATCATGGGTA+TGG - chr5.2:28627866-28627885 None:intergenic 35.0%
GTGTGATGCAAATATGATCT+TGG + chr5.2:28628202-28628221 MS.gene032792:CDS 35.0%
TAATGTTGGATTTACAGAGG+TGG + chr5.2:28628022-28628041 MS.gene032792:CDS 35.0%
TATGAAGGAAAAATTCGGAG+AGG + chr5.2:28627759-28627778 MS.gene032792:CDS 35.0%
TCTCTCGATTTAGTAGATCA+TGG - chr5.2:28627872-28627891 None:intergenic 35.0%
TTACTTATACTTTGGGCTTG+TGG - chr5.2:28628526-28628545 None:intergenic 35.0%
TTAGAGTACGCTTTACAAAC+AGG + chr5.2:28627658-28627677 MS.gene032792:CDS 35.0%
! AGACAAAGAAGTATGGTGTA+TGG + chr5.2:28628071-28628090 MS.gene032792:CDS 35.0%
! ATCTTGGATTACGGGTATTT+TGG + chr5.2:28628218-28628237 MS.gene032792:CDS 35.0%
! CATTGGTCTCTTAATCAGTT+AGG - chr5.2:28628671-28628690 None:intergenic 35.0%
! GTATTTTCAACGACAGTTGT+TGG + chr5.2:28628115-28628134 MS.gene032792:CDS 35.0%
!! AGGTTTGTTTGTTGTAAGGA+AGG + chr5.2:28627708-28627727 MS.gene032792:CDS 35.0%
!! GCATGAGAAAGTTGATTTTG+AGG + chr5.2:28628485-28628504 MS.gene032792:intron 35.0%
!!! GCCTTTTCAGGTTGTTATTT+TGG - chr5.2:28628316-28628335 None:intergenic 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG - chr5.2:28628311-28628330 None:intergenic 35.0%
!!! TTTTGGTGATGTTGTTTCAC+TGG + chr5.2:28628235-28628254 MS.gene032792:CDS 35.0%
AACTTATGAGCACACATGCA+GGG + chr5.2:28627991-28628010 MS.gene032792:CDS 40.0%
CAGTTAGGTTACTCCAAAGT+TGG - chr5.2:28628656-28628675 None:intergenic 40.0%
CGCTAATGTTGGATTTACAG+AGG + chr5.2:28628019-28628038 MS.gene032792:CDS 40.0%
CGTCGAACATCAATTTGAAC+AGG - chr5.2:28629204-28629223 None:intergenic 40.0%
CTTGCTTATGCTTTACGTGA+GGG + chr5.2:28627627-28627646 MS.gene032792:CDS 40.0%
GGAAGGAATACGGAAGAAAA+AGG + chr5.2:28627725-28627744 MS.gene032792:CDS 40.0%
GTGCACAGTATCCATAACTT+GGG - chr5.2:28628823-28628842 None:intergenic 40.0%
TATACTAGGCTGGGTTTAAG+AGG - chr5.2:28628780-28628799 None:intergenic 40.0%
TCCTAACTCCTAACCAACTT+TGG + chr5.2:28628640-28628659 MS.gene032792:intron 40.0%
TCTTGCTTATGCTTTACGTG+AGG + chr5.2:28627626-28627645 MS.gene032792:CDS 40.0%
TGCACAGTATCCATAACTTG+GGG - chr5.2:28628822-28628841 None:intergenic 40.0%
TGTGCACAGTATCCATAACT+TGG - chr5.2:28628824-28628843 None:intergenic 40.0%
! AGGTTACTCCAAAGTTGGTT+AGG - chr5.2:28628651-28628670 None:intergenic 40.0%
! TCCAAAGTTGGTTAGGAGTT+AGG - chr5.2:28628644-28628663 None:intergenic 40.0%
! TGCTTTGTTGTGCCTTTATG+CGG - chr5.2:28628750-28628769 None:intergenic 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG - chr5.2:28628310-28628329 None:intergenic 40.0%
!!! TTTTGAGGCTGGGATATACT+AGG - chr5.2:28628794-28628813 None:intergenic 40.0%
ACGGTAGTGTATCGTCATGT+AGG + chr5.2:28627688-28627707 MS.gene032792:CDS 45.0%
AGACCAATGGACAAAACCAG+AGG + chr5.2:28628682-28628701 MS.gene032792:intron 45.0%
ATTGATATGGCCGATGACTC+TGG + chr5.2:28627945-28627964 MS.gene032792:CDS 45.0%
CAAATTGATGTTCGACGGTG+CGG + chr5.2:28629207-28629226 MS.gene032792:intron 45.0%
CAACTTATGAGCACACATGC+AGG + chr5.2:28627990-28628009 MS.gene032792:CDS 45.0%
CACAAACACAGCCGCATAAA+AGG + chr5.2:28628713-28628732 MS.gene032792:intron 45.0%
CCTGAAAAGGCTAGCATATC+TGG + chr5.2:28628325-28628344 MS.gene032792:intron 45.0%
CTGCCTTAATCCAGAGTCAT+CGG - chr5.2:28627958-28627977 None:intergenic 45.0%
GATGATTGGAAGCCAAGACA+TGG + chr5.2:28627564-28627583 MS.gene032792:CDS 45.0%
GCACAGTATCCATAACTTGG+GGG - chr5.2:28628821-28628840 None:intergenic 45.0%
GGATGGAAAGTCTCCAAAGA+AGG - chr5.2:28629160-28629179 None:intergenic 45.0%
TATGCTTTACGTGAGGGCTT+CGG + chr5.2:28627633-28627652 MS.gene032792:CDS 45.0%
TGACTCTGGATTAAGGCAGA+AGG + chr5.2:28627959-28627978 MS.gene032792:CDS 45.0%
! AAAACCAATGGTGGTGCCTT+TGG + chr5.2:28629261-28629280 MS.gene032792:CDS 45.0%
! AAACCAATGGTGGTGCCTTT+GGG + chr5.2:28629262-28629281 MS.gene032792:CDS 45.0%
! AATAAGAGTTTGGGATGCGC+AGG - chr5.2:28628408-28628427 None:intergenic 45.0%
! ATAAGAGTTTGGGATGCGCA+GGG - chr5.2:28628407-28628426 None:intergenic 45.0%
! CTGTGCTTGTGCCTTTTATG+CGG - chr5.2:28628727-28628746 None:intergenic 45.0%
! CTTTTATGCGGCTGTGTTTG+TGG - chr5.2:28628715-28628734 None:intergenic 45.0%
! GGCTGGGTTTAAGAGGTTTT+TGG - chr5.2:28628773-28628792 None:intergenic 45.0%
!!! CAGGTTGTTATTTTGGTGGG+GGG - chr5.2:28628309-28628328 None:intergenic 45.0%
!!! CCAGATATGCTAGCCTTTTC+AGG - chr5.2:28628328-28628347 None:intergenic 45.0%
!!! GATCCTCTGGTTTTGTCCAT+TGG - chr5.2:28628688-28628707 None:intergenic 45.0%
!!! GTTTGTGTTTTTTGCGCGAC+TGG - chr5.2:28628871-28628890 None:intergenic 45.0%
!!! GTTTTTTGCGCGACTGGTTT+TGG - chr5.2:28628865-28628884 None:intergenic 45.0%
AAGACAGGACGACTGCTACT+GGG - chr5.2:28629181-28629200 None:intergenic 50.0%
ACGGCGAAGAAAACCAATGG+TGG + chr5.2:28629252-28629271 MS.gene032792:CDS 50.0%
AGGCTGGGATATACTAGGCT+GGG - chr5.2:28628789-28628808 None:intergenic 50.0%
AGTATCCATAACTTGGGGGC+TGG - chr5.2:28628817-28628836 None:intergenic 50.0%
CAAAACCAGCCCCCAAGTTA+TGG + chr5.2:28628809-28628828 MS.gene032792:intron 50.0%
TGGACGGCGAAGAAAACCAA+TGG + chr5.2:28629249-28629268 MS.gene032792:CDS 50.0%
TGGCCGATGACTCTGGATTA+AGG + chr5.2:28627952-28627971 MS.gene032792:CDS 50.0%
TTGTAGGTCATGGCTGTGGA+CGG + chr5.2:28629233-28629252 MS.gene032792:intron 50.0%
! AGTATGGTGTATGGTGACGC+TGG + chr5.2:28628080-28628099 MS.gene032792:CDS 50.0%
! TAAGAGTTTGGGATGCGCAG+GGG - chr5.2:28628406-28628425 None:intergenic 50.0%
!!! TAACTTGGGGGCTGGTTTTG+AGG - chr5.2:28628809-28628828 None:intergenic 50.0%
ATGCGGCTGTGTTTGTGGCT+GGG - chr5.2:28628710-28628729 None:intergenic 55.0%
ATTGATGTTCGACGGTGCGG+TGG + chr5.2:28629210-28629229 MS.gene032792:intron 55.0%
GAAGACAGGACGACTGCTAC+TGG - chr5.2:28629182-28629201 None:intergenic 55.0%
GAGGCTGGGATATACTAGGC+TGG - chr5.2:28628790-28628809 None:intergenic 55.0%
GCACAAGCACAGCCGCATAA+AGG + chr5.2:28628735-28628754 MS.gene032792:intron 55.0%
GCAGGGCATAGCGCTAATGT+TGG + chr5.2:28628008-28628027 MS.gene032792:CDS 55.0%
GTGGTTGTAGGTCATGGCTG+TGG + chr5.2:28629229-28629248 MS.gene032792:intron 55.0%
TATGCGGCTGTGTTTGTGGC+TGG - chr5.2:28628711-28628730 None:intergenic 55.0%
TGTTTGTGGCTGGGATCCTC+TGG - chr5.2:28628701-28628720 None:intergenic 55.0%
!! CATCCCAAAGGCACCACCAT+TGG - chr5.2:28629268-28629287 None:intergenic 55.0%
CAGGACGACTGCTACTGGGA+TGG - chr5.2:28629177-28629196 None:intergenic 60.0%
GGTGCGGTGGTTGTAGGTCA+TGG + chr5.2:28629223-28629242 MS.gene032792:intron 60.0%
TTCGACGGTGCGGTGGTTGT+AGG + chr5.2:28629217-28629236 MS.gene032792:intron 60.0%
!!! TGGGGGCTGGTTTTGAGGCT+GGG - chr5.2:28628804-28628823 None:intergenic 60.0%
!!! TTGGGGGCTGGTTTTGAGGC+TGG - chr5.2:28628805-28628824 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 28627549 28629288 28627549 ID=MS.gene032792
chr5.2 mRNA 28627549 28629288 28627549 ID=MS.gene032792.t1;Parent=MS.gene032792
chr5.2 exon 28627549 28628272 28627549 ID=MS.gene032792.t1.exon1;Parent=MS.gene032792.t1
chr5.2 CDS 28627549 28628272 28627549 ID=cds.MS.gene032792.t1;Parent=MS.gene032792.t1
chr5.2 exon 28629239 28629288 28629239 ID=MS.gene032792.t1.exon2;Parent=MS.gene032792.t1
chr5.2 CDS 28629239 28629288 28629239 ID=cds.MS.gene032792.t1;Parent=MS.gene032792.t1
Gene Sequence

>MS.gene032792

ATGACTTCTTCAAATGATGATTGGAAGCCAAGACATGGAATGAAATTTGACACTAGAGAAGAGGTTGAACAATTTTATCTTGCTTATGCTTTACGTGAGGGCTTCGGAGTTAGAGTACGCTTTACAAACAGGAAGAAAGACGGTAGTGTATCGTCATGTAGGTTTGTTTGTTGTAAGGAAGGAATACGGAAGAAAAAGGATAAATGTGCATATGAAGGAAAAATTCGGAGAGGCGAGACTAGAGCGAAATGCATAGCAAGAATTACACTTTCAAGTGAAAATGGAAAGTTGGTTATCAATAAGTTTGTAGCTAACCATACCCATGATCTACTAAATCGAGAGACAACGCACATGCTTCGATCACATAGAAAGATAACTGAAGTACAAGCATATGAGATTGATATGGCCGATGACTCTGGATTAAGGCAGAAGGAAGTGTATCAACTTATGAGCACACATGCAGGGCATAGCGCTAATGTTGGATTTACAGAGGTGGATGTAAGAAACTACATCACTACAAAAAGACAAAGAAGTATGGTGTATGGTGACGCTGGATATCTTTCACAGTATTTTCAACGACAGTTGTTGGAGAATCTGTCCTTCTTTTATGCATATCAGATGGATATAGATGAACAGATTACAAATGTGTTCTGGTGTGATGCAAATATGATCTTGGATTACGGGTATTTTGGTGATGTTGTTTCACTGGACACCACATATCTTAGTAAGCTTTATTTTCTCATTTCTTTCTTTCTCTCCCCCCACCAAAATAACAACCTGAAAAGGCTAGCATATCTGGTTCAAATCTGCAATAAAAGAATCATGAAAGATTGTTAATTGCAATTACAAAGGATCCCCTGCGCATCCCAAACTCTTATTTCTAACATTGGAATGAAACAAGAAAATGTGTTATTAATGTATTGTTGTTATTGAGTTGCATGAGAAAGTTGATTTTGAGGTCTCATTCTATAGCACCACAAGCCCAAAGTATAAGTAAACAAATACTCGAAAATACTTCACATTTATTTACATGATTAAATGACTTTCATTCAATTTCAAAACATTGTAAGGAAGTTGTGTAGAAAAGCAAGTCCTAACTCCTAACCAACTTTGGAGTAACCTAACTGATTAAGAGACCAATGGACAAAACCAGAGGATCCCAGCCACAAACACAGCCGCATAAAAGGCACAAGCACAGCCGCATAAAGGCACAACAAAGCACCAAAAACCTCTTAAACCCAGCCTAGTATATCCCAGCCTCAAAACCAGCCCCCAAGTTATGGATACTGTGCACAAAAAACACAAACAGCAGACCAAAACCAGTCGCGCAAAAAACACAAACACAAACTTGTTATATCAGTGTATCATTATTCTACAATTGATTCAAAACAGCACCAATACCATTGTTTTCAATCAAGAGTAACCATTGTTATGAAGAAATCATGAGAAAACATAATACTAACAAAAAAATAAATTGAAAAAAAAATGATTTCATTGATGGATAAAACTTAATTTCATATATACATTGAGATCCAAATTACATAATAGCTTAATCTAAAATACATGTAATCAAAATCATACTTAATTGAATACACATAACGATCTAAGCCTTCTTTGGAGACTTTCCATCCCAGTAGCAGTCGTCCTGTCTTCCTGTTCAAATTGATGTTCGACGGTGCGGTGGTTGTAGGTCATGGCTGTGGACGGCGAAGAAAACCAATGGTGGTGCCTTTGGGATGA
Protein sequence

>MS.gene032792.t1

MTSSNDDWKPRHGMKFDTREEVEQFYLAYALREGFGVRVRFTNRKKDGSVSSCRFVCCKEGIRKKKDKCAYEGKIRRGETRAKCIARITLSSENGKLVINKFVANHTHDLLNRETTHMLRSHRKITEVQAYEIDMADDSGLRQKEVYQLMSTHAGHSANVGFTEVDVRNYITTKRQRSMVYGDAGYLSQYFQRQLLENLSFFYAYQMDIDEQITNVFWCDANMILDYGYFGDVVSLDTTYLSHGCGRRRKPMVVPLG