Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032805.t1 | XP_003613602.1 | 89.1 | 175 | 18 | 1 | 2 | 175 | 75 | 249 | 2.60E-82 | 315.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032805.t1 | Q9M9S3 | 74.3 | 167 | 43 | 0 | 5 | 171 | 77 | 243 | 1.2e-70 | 268.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032805.t1 | G7KB19 | 89.1 | 175 | 18 | 1 | 2 | 175 | 75 | 249 | 1.9e-82 | 315.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene032805.t1 | TF | Whirly |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032805.t1 | MTR_5g038560 | 89.143 | 175 | 18 | 1 | 2 | 175 | 75 | 249 | 2.25e-110 | 320 |
MS.gene032805.t1 | MTR_8g468570 | 68.421 | 171 | 54 | 0 | 1 | 171 | 73 | 243 | 2.27e-84 | 254 |
MS.gene032805.t1 | MTR_7g116270 | 41.899 | 179 | 93 | 3 | 8 | 179 | 46 | 220 | 1.66e-47 | 159 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032805.t1 | AT1G14410 | 74.251 | 167 | 43 | 0 | 5 | 171 | 77 | 243 | 1.61e-91 | 272 |
MS.gene032805.t1 | AT2G02740 | 72.289 | 166 | 45 | 1 | 8 | 172 | 84 | 249 | 3.98e-87 | 261 |
MS.gene032805.t1 | AT1G71260 | 42.632 | 190 | 103 | 1 | 8 | 197 | 53 | 236 | 5.67e-52 | 171 |
Find 54 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATATTTACTTCTGGCTTTA+TGG | 0.135973 | 5.2:-28767847 | None:intergenic |
AACTACCTTCTTCCCATAAA+AGG | 0.254450 | 5.2:-28765886 | None:intergenic |
TTTATCATGCCATGCCTCTT+AGG | 0.293213 | 5.2:+28767804 | MS.gene032805:CDS |
TAAACTATCTGTGGATGAAA+TGG | 0.298088 | 5.2:+28765813 | MS.gene032805:CDS |
GAAGCTGCTGTTCTTGTCAT+TGG | 0.335369 | 5.2:+28768650 | MS.gene032805:CDS |
ACATCCAATGAAGTGAATTC+TGG | 0.350841 | 5.2:-28762180 | None:intergenic |
ACCTCCAGAATTCACTTCAT+TGG | 0.371286 | 5.2:+28762176 | MS.gene032805:CDS |
TATGCAGTCTGCTAATGTTC+TGG | 0.374611 | 5.2:+28768751 | MS.gene032805:CDS |
GCTTTCTGCTCCAATCATAT+TGG | 0.384421 | 5.2:-28762393 | None:intergenic |
GAGCCACTTCACGACGGTTC+CGG | 0.412542 | 5.2:+28766731 | MS.gene032805:CDS |
GAACAGTCCTGCTGTGGATC+AGG | 0.428633 | 5.2:-28768698 | None:intergenic |
CTACAGTTTGCTCCTTCTGC+CGG | 0.434257 | 5.2:+28762364 | MS.gene032805:CDS |
ATGGGAAATCTAATTAATCT+TGG | 0.439383 | 5.2:+28765832 | MS.gene032805:CDS |
TAATGTTCTGGACAGCAAAC+AGG | 0.448404 | 5.2:+28768763 | MS.gene032805:CDS |
AAACTATCTGTGGATGAAAT+GGG | 0.464987 | 5.2:+28765814 | MS.gene032805:CDS |
CCAATCATATTGGCGAAAAC+CGG | 0.464995 | 5.2:-28762383 | None:intergenic |
GTTGCTGTCCAATGCTTCCA+TGG | 0.466647 | 5.2:+28769557 | MS.gene032805:CDS |
GAAGTGAATTCTGGAGGTAC+AGG | 0.480485 | 5.2:-28762171 | None:intergenic |
TCATGCCATGCCTCTTAGGT+TGG | 0.480625 | 5.2:+28767808 | MS.gene032805:CDS |
TGATCCACAGCAGGACTGTT+CGG | 0.494333 | 5.2:+28768700 | MS.gene032805:CDS |
TCATCTATGTTGTTCCTCCA+TGG | 0.497268 | 5.2:-28769574 | None:intergenic |
GTGGCTGCCTGATCCACAGC+AGG | 0.511377 | 5.2:+28768691 | MS.gene032805:CDS |
TTGTTCCTCCATGGAAGCAT+TGG | 0.513765 | 5.2:-28769565 | None:intergenic |
TGAATGCAGAGCTGCTATCA+AGG | 0.521224 | 5.2:+28768624 | MS.gene032805:CDS |
CAAAGGCATTCCAACCTAAG+AGG | 0.533103 | 5.2:-28767818 | None:intergenic |
ACTTAGTTTAAACATGTGAC+CGG | 0.533326 | 5.2:-28766750 | None:intergenic |
ATCTAATTAATCTTGGTGCA+AGG | 0.535516 | 5.2:+28765839 | MS.gene032805:CDS |
TTGGTCGTTCAGTTTACAAA+GGG | 0.538858 | 5.2:+28762127 | MS.gene032805:CDS |
TCTAATTAATCTTGGTGCAA+GGG | 0.543790 | 5.2:+28765840 | MS.gene032805:CDS |
ATATGATTGGAGCAGAAAGC+AGG | 0.558461 | 5.2:+28762396 | MS.gene032805:CDS |
GTCTTGTTATGCAGTGATGA+AGG | 0.561694 | 5.2:+28766683 | MS.gene032805:intron |
TGGCTTTATGGAGTCAGCAA+AGG | 0.562818 | 5.2:-28767835 | None:intergenic |
TCGTTCAGTTTACAAAGGGA+AGG | 0.568592 | 5.2:+28762131 | MS.gene032805:CDS |
CAAAGGGAAGGCTGTGCTCA+CGG | 0.570017 | 5.2:+28762143 | MS.gene032805:CDS |
GCACAAAACGACGGCGAGCA+AGG | 0.570375 | 5.2:+28769472 | MS.gene032805:CDS |
CTCACCGAACAGTCCTGCTG+TGG | 0.572774 | 5.2:-28768704 | None:intergenic |
TGACCGGAACCGTCGTGAAG+TGG | 0.576610 | 5.2:-28766734 | None:intergenic |
GTTGGTCGTTCAGTTTACAA+AGG | 0.578583 | 5.2:+28762126 | MS.gene032805:CDS |
AGTTAAAGAATTGCCACTGA+GGG | 0.581983 | 5.2:+28762098 | MS.gene032805:intron |
GCATTCAAGATATCTAAAGA+AGG | 0.582740 | 5.2:+28762331 | MS.gene032805:CDS |
ACAGGTATTTAAACTATCTG+TGG | 0.595168 | 5.2:+28765804 | MS.gene032805:intron |
TATTGGCGAAAACCGGCAGA+AGG | 0.609525 | 5.2:-28762376 | None:intergenic |
GCATTCCAACCTAAGAGGCA+TGG | 0.612818 | 5.2:-28767813 | None:intergenic |
CACGGATTTGCACAAAACGA+CGG | 0.616583 | 5.2:+28769463 | MS.gene032805:CDS |
TTGCCACTGAGGGTTTATGT+TGG | 0.619663 | 5.2:+28762108 | MS.gene032805:CDS |
ATTTATCCCTGTCACAAAAG+CGG | 0.631693 | 5.2:+28766949 | MS.gene032805:CDS |
TGGACAGCAACTAAATCACT+AGG | 0.637284 | 5.2:-28769545 | None:intergenic |
GTGCAAGAGATGAGCTGCAG+TGG | 0.638386 | 5.2:+28768672 | MS.gene032805:CDS |
TCCAATGAAGTGAATTCTGG+AGG | 0.645641 | 5.2:-28762177 | None:intergenic |
GAATATTAAACAGAACGCCA+CGG | 0.658357 | 5.2:+28769445 | MS.gene032805:CDS |
CAGTTAAAGAATTGCCACTG+AGG | 0.671959 | 5.2:+28762097 | MS.gene032805:intron |
CGACCAACATAAACCCTCAG+TGG | 0.685074 | 5.2:-28762111 | None:intergenic |
GCTGTCCAATGCTTCCATGG+AGG | 0.705010 | 5.2:+28769560 | MS.gene032805:CDS |
AAGGTGGAGCCACTTCACGA+CGG | 0.712557 | 5.2:+28766725 | MS.gene032805:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 28762002 | 28769592 | 28762002 | ID=MS.gene032805 |
chr5.2 | mRNA | 28762002 | 28769592 | 28762002 | ID=MS.gene032805.t1;Parent=MS.gene032805 |
chr5.2 | exon | 28762002 | 28762005 | 28762002 | ID=MS.gene032805.t1.exon1;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28762002 | 28762005 | 28762002 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28762100 | 28762200 | 28762100 | ID=MS.gene032805.t1.exon2;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28762100 | 28762200 | 28762100 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28762325 | 28762417 | 28762325 | ID=MS.gene032805.t1.exon3;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28762325 | 28762417 | 28762325 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28765808 | 28765902 | 28765808 | ID=MS.gene032805.t1.exon4;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28765808 | 28765902 | 28765808 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28766697 | 28766770 | 28766697 | ID=MS.gene032805.t1.exon5;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28766697 | 28766770 | 28766697 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28766912 | 28767000 | 28766912 | ID=MS.gene032805.t1.exon6;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28766912 | 28767000 | 28766912 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28767804 | 28767860 | 28767804 | ID=MS.gene032805.t1.exon7;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28767804 | 28767860 | 28767804 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28768617 | 28768784 | 28768617 | ID=MS.gene032805.t1.exon8;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28768617 | 28768784 | 28768617 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
chr5.2 | exon | 28769401 | 28769592 | 28769401 | ID=MS.gene032805.t1.exon9;Parent=MS.gene032805.t1 |
chr5.2 | CDS | 28769401 | 28769592 | 28769401 | ID=cds.MS.gene032805.t1;Parent=MS.gene032805.t1 |
Gene Sequence |
Protein sequence |