Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032825.t1 | XP_003613642.1 | 96.6 | 236 | 2 | 1 | 1 | 230 | 48 | 283 | 6.50E-100 | 373.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032825.t1 | Q8LC03 | 63.5 | 233 | 75 | 3 | 7 | 230 | 63 | 294 | 3.1e-50 | 199.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032825.t1 | G7KB59 | 96.6 | 236 | 2 | 1 | 1 | 230 | 48 | 283 | 4.7e-100 | 373.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene032825.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032825.t1 | MTR_5g039000 | 96.610 | 236 | 2 | 1 | 1 | 230 | 48 | 283 | 4.40e-167 | 462 |
MS.gene032825.t1 | MTR_8g468210 | 83.966 | 237 | 27 | 5 | 1 | 230 | 50 | 282 | 6.18e-127 | 360 |
MS.gene032825.t1 | MTR_6g011610 | 54.812 | 239 | 72 | 6 | 1 | 227 | 58 | 272 | 1.17e-74 | 228 |
MS.gene032825.t1 | MTR_6g011610 | 57.209 | 215 | 65 | 4 | 17 | 227 | 62 | 253 | 2.51e-74 | 226 |
MS.gene032825.t1 | MTR_7g010020 | 54.148 | 229 | 94 | 7 | 1 | 223 | 48 | 271 | 2.23e-70 | 216 |
MS.gene032825.t1 | MTR_8g089895 | 44.886 | 176 | 88 | 3 | 18 | 191 | 40 | 208 | 6.43e-39 | 137 |
MS.gene032825.t1 | MTR_6g007647 | 64.000 | 100 | 36 | 0 | 26 | 125 | 29 | 128 | 1.02e-38 | 135 |
MS.gene032825.t1 | MTR_6g007647 | 64.000 | 100 | 36 | 0 | 26 | 125 | 63 | 162 | 3.01e-38 | 134 |
MS.gene032825.t1 | MTR_3g086790 | 57.500 | 120 | 48 | 1 | 17 | 133 | 47 | 166 | 7.02e-38 | 134 |
MS.gene032825.t1 | MTR_3g080100 | 54.225 | 142 | 54 | 2 | 15 | 145 | 5 | 146 | 7.58e-38 | 131 |
MS.gene032825.t1 | MTR_3g080100 | 54.225 | 142 | 54 | 2 | 15 | 145 | 44 | 185 | 1.52e-37 | 132 |
MS.gene032825.t1 | MTR_5g038280 | 60.169 | 118 | 46 | 1 | 8 | 125 | 66 | 182 | 1.63e-37 | 133 |
MS.gene032825.t1 | MTR_8g469430 | 66.667 | 96 | 32 | 0 | 30 | 125 | 89 | 184 | 7.27e-37 | 130 |
MS.gene032825.t1 | MTR_4g107650 | 57.025 | 121 | 48 | 1 | 2 | 122 | 71 | 187 | 1.93e-36 | 131 |
MS.gene032825.t1 | MTR_7g103340 | 50.926 | 108 | 46 | 1 | 18 | 125 | 51 | 151 | 7.23e-31 | 114 |
MS.gene032825.t1 | MTR_1g061660 | 52.885 | 104 | 46 | 2 | 15 | 117 | 45 | 146 | 4.14e-27 | 104 |
MS.gene032825.t1 | MTR_3g092150 | 53.846 | 91 | 42 | 0 | 32 | 122 | 40 | 130 | 6.61e-26 | 101 |
MS.gene032825.t1 | MTR_8g026960 | 41.322 | 121 | 71 | 0 | 4 | 124 | 8 | 128 | 1.11e-23 | 95.5 |
MS.gene032825.t1 | MTR_4g097600 | 47.573 | 103 | 52 | 1 | 15 | 117 | 114 | 214 | 6.17e-21 | 88.6 |
MS.gene032825.t1 | MTR_4g100550 | 45.545 | 101 | 54 | 1 | 18 | 117 | 107 | 207 | 7.12e-20 | 85.9 |
MS.gene032825.t1 | MTR_5g019650 | 47.872 | 94 | 49 | 0 | 30 | 123 | 53 | 146 | 1.69e-19 | 84.0 |
MS.gene032825.t1 | MTR_5g019680 | 48.889 | 90 | 46 | 0 | 30 | 119 | 53 | 142 | 1.99e-19 | 83.2 |
MS.gene032825.t1 | MTR_7g093430 | 45.283 | 106 | 54 | 1 | 22 | 127 | 152 | 253 | 7.41e-19 | 83.6 |
MS.gene032825.t1 | MTR_1g054285 | 46.875 | 96 | 51 | 0 | 22 | 117 | 146 | 241 | 1.09e-18 | 83.2 |
MS.gene032825.t1 | MTR_5g014890 | 45.000 | 100 | 55 | 0 | 22 | 121 | 115 | 214 | 1.16e-18 | 82.4 |
MS.gene032825.t1 | MTR_8g006705 | 48.913 | 92 | 47 | 0 | 30 | 121 | 146 | 237 | 1.56e-18 | 82.8 |
MS.gene032825.t1 | MTR_2g061030 | 41.071 | 112 | 65 | 1 | 6 | 117 | 177 | 287 | 9.17e-18 | 80.9 |
MS.gene032825.t1 | MTR_1g017090 | 47.727 | 88 | 46 | 0 | 30 | 117 | 130 | 217 | 1.16e-17 | 80.1 |
MS.gene032825.t1 | MTR_5g013010 | 43.750 | 96 | 54 | 0 | 22 | 117 | 128 | 223 | 8.00e-17 | 77.8 |
MS.gene032825.t1 | MTR_4g126900 | 44.706 | 85 | 47 | 0 | 33 | 117 | 91 | 175 | 1.91e-16 | 75.5 |
MS.gene032825.t1 | MTR_4g084750 | 46.591 | 88 | 47 | 0 | 30 | 117 | 65 | 152 | 6.69e-16 | 73.6 |
MS.gene032825.t1 | MTR_3g103590 | 43.617 | 94 | 53 | 0 | 8 | 101 | 123 | 216 | 7.77e-16 | 75.1 |
MS.gene032825.t1 | MTR_2g038625 | 38.182 | 110 | 65 | 1 | 11 | 117 | 60 | 169 | 1.04e-13 | 68.2 |
MS.gene032825.t1 | MTR_2g038580 | 38.182 | 110 | 65 | 1 | 11 | 117 | 60 | 169 | 1.04e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032825.t1 | AT1G69780 | 65.690 | 239 | 72 | 4 | 1 | 230 | 57 | 294 | 2.92e-103 | 301 |
MS.gene032825.t1 | AT1G26960 | 63.426 | 216 | 59 | 5 | 17 | 230 | 58 | 255 | 7.08e-87 | 258 |
MS.gene032825.t1 | AT3G01220 | 54.419 | 215 | 81 | 6 | 15 | 223 | 70 | 273 | 6.51e-69 | 213 |
MS.gene032825.t1 | AT5G15150 | 48.165 | 218 | 85 | 6 | 17 | 223 | 100 | 300 | 8.69e-58 | 186 |
MS.gene032825.t1 | AT5G65310 | 50.602 | 166 | 75 | 3 | 18 | 176 | 39 | 204 | 8.62e-42 | 144 |
MS.gene032825.t1 | AT5G65310 | 50.602 | 166 | 75 | 3 | 18 | 176 | 57 | 222 | 1.54e-41 | 144 |
MS.gene032825.t1 | AT4G40060 | 57.143 | 133 | 52 | 3 | 11 | 139 | 39 | 170 | 5.45e-38 | 134 |
MS.gene032825.t1 | AT2G22430 | 67.010 | 97 | 32 | 0 | 29 | 125 | 61 | 157 | 1.09e-37 | 134 |
MS.gene032825.t1 | AT3G01470 | 63.000 | 100 | 37 | 0 | 26 | 125 | 64 | 163 | 6.16e-37 | 130 |
MS.gene032825.t1 | AT1G27045 | 44.737 | 152 | 77 | 2 | 4 | 148 | 41 | 192 | 3.12e-28 | 107 |
MS.gene032825.t1 | AT1G27045 | 45.517 | 145 | 72 | 2 | 11 | 148 | 5 | 149 | 5.15e-28 | 105 |
MS.gene032825.t1 | AT1G27045 | 45.517 | 145 | 72 | 2 | 11 | 148 | 5 | 149 | 5.15e-28 | 105 |
MS.gene032825.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 30 | 148 | 17 | 141 | 2.12e-27 | 103 |
MS.gene032825.t1 | AT2G46680 | 52.688 | 93 | 44 | 0 | 31 | 123 | 33 | 125 | 1.20e-26 | 103 |
MS.gene032825.t1 | AT1G27045 | 49.573 | 117 | 58 | 1 | 4 | 119 | 41 | 157 | 1.40e-26 | 103 |
MS.gene032825.t1 | AT2G46680 | 53.333 | 90 | 42 | 0 | 31 | 120 | 33 | 122 | 7.11e-26 | 101 |
MS.gene032825.t1 | AT3G61890 | 51.111 | 90 | 44 | 0 | 33 | 122 | 33 | 122 | 2.44e-24 | 97.1 |
MS.gene032825.t1 | AT5G03790 | 51.136 | 88 | 43 | 0 | 30 | 117 | 77 | 164 | 4.53e-24 | 96.3 |
MS.gene032825.t1 | AT2G18550 | 40.816 | 147 | 69 | 4 | 20 | 158 | 48 | 184 | 1.86e-22 | 91.7 |
MS.gene032825.t1 | AT5G03790 | 52.500 | 80 | 38 | 0 | 30 | 109 | 77 | 156 | 1.99e-22 | 90.9 |
MS.gene032825.t1 | AT4G36740 | 48.544 | 103 | 46 | 1 | 21 | 123 | 47 | 142 | 5.94e-22 | 90.5 |
MS.gene032825.t1 | AT4G36740 | 48.544 | 103 | 46 | 1 | 21 | 123 | 46 | 141 | 6.45e-22 | 90.1 |
MS.gene032825.t1 | AT2G36610 | 41.379 | 116 | 58 | 2 | 12 | 119 | 55 | 168 | 1.66e-21 | 88.2 |
MS.gene032825.t1 | AT5G66700 | 46.552 | 116 | 53 | 2 | 17 | 125 | 60 | 173 | 3.59e-21 | 88.6 |
MS.gene032825.t1 | AT5G53980 | 45.545 | 101 | 55 | 0 | 25 | 125 | 6 | 106 | 7.24e-21 | 85.9 |
MS.gene032825.t1 | AT3G60390 | 45.545 | 101 | 55 | 0 | 17 | 117 | 149 | 249 | 4.01e-19 | 84.7 |
MS.gene032825.t1 | AT4G37790 | 45.000 | 100 | 55 | 0 | 18 | 117 | 114 | 213 | 1.17e-18 | 82.8 |
MS.gene032825.t1 | AT2G01430 | 44.554 | 101 | 56 | 0 | 17 | 117 | 126 | 226 | 2.75e-18 | 81.6 |
MS.gene032825.t1 | AT5G47370 | 43.434 | 99 | 56 | 0 | 19 | 117 | 119 | 217 | 3.39e-18 | 81.6 |
MS.gene032825.t1 | AT5G06710 | 45.263 | 95 | 52 | 0 | 22 | 116 | 182 | 276 | 9.55e-18 | 80.9 |
MS.gene032825.t1 | AT2G22800 | 44.792 | 96 | 53 | 0 | 22 | 117 | 105 | 200 | 2.94e-17 | 79.0 |
MS.gene032825.t1 | AT4G17460 | 42.708 | 96 | 55 | 0 | 22 | 117 | 127 | 222 | 9.94e-17 | 77.4 |
MS.gene032825.t1 | AT2G44910 | 46.591 | 88 | 47 | 0 | 30 | 117 | 163 | 250 | 2.17e-16 | 77.0 |
MS.gene032825.t1 | AT1G70920 | 37.600 | 125 | 69 | 2 | 9 | 133 | 50 | 165 | 2.91e-15 | 72.0 |
MS.gene032825.t1 | AT1G70920 | 37.600 | 125 | 69 | 2 | 9 | 133 | 20 | 135 | 3.83e-15 | 71.2 |
MS.gene032825.t1 | AT4G16780 | 40.625 | 96 | 57 | 0 | 22 | 117 | 121 | 216 | 4.02e-14 | 70.5 |
MS.gene032825.t1 | AT2G01430 | 51.515 | 66 | 32 | 0 | 17 | 82 | 126 | 191 | 3.02e-13 | 67.0 |
MS.gene032825.t1 | AT5G06710 | 51.667 | 60 | 29 | 0 | 22 | 81 | 182 | 241 | 1.08e-11 | 63.2 |
Find 34 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTGACCATTTGAATTTC+TGG | 0.030649 | 5.2:+29150048 | None:intergenic |
ATCCTTCTGTTTCTTTGTTC+AGG | 0.195256 | 5.2:+29150241 | None:intergenic |
CCACCTTCTGCTAGGCCTTC+AGG | 0.235321 | 5.2:-29150105 | MS.gene032825:CDS |
TGGATGATCAAGCTGGATTT+TGG | 0.257444 | 5.2:-29149996 | MS.gene032825:CDS |
TTTCTGGCCTTGAAGAAGTT+TGG | 0.289017 | 5.2:+29150064 | None:intergenic |
GAAGAAGAGGAGGCTTAATA+TGG | 0.330137 | 5.2:-29151394 | MS.gene032825:CDS |
AACCTAGACAAGTTGCTATA+TGG | 0.331625 | 5.2:-29151281 | MS.gene032825:CDS |
CTATATGGTTTCAAAATAGA+AGG | 0.336540 | 5.2:-29151266 | MS.gene032825:CDS |
GAAAGAGGACTATCACTTGC+TGG | 0.446270 | 5.2:+29150162 | None:intergenic |
TTCAAAATAGAAGGGCTAGA+TGG | 0.455440 | 5.2:-29151257 | MS.gene032825:CDS |
CCTTCTTTCCACCTTCTGCT+AGG | 0.463390 | 5.2:-29150113 | MS.gene032825:CDS |
TTCAGGTTGATTGATTCTGT+TGG | 0.470903 | 5.2:+29150258 | None:intergenic |
CCTAGCAGAAGGTGGAAAGA+AGG | 0.498274 | 5.2:+29150113 | None:intergenic |
TTCAAGGCCAGAAATTCAAA+TGG | 0.500653 | 5.2:-29150055 | MS.gene032825:CDS |
GAGGAAGATTTATCTGATGA+TGG | 0.501239 | 5.2:-29151432 | MS.gene032825:CDS |
AGGTTCTGCTTGTTGTATGT+TGG | 0.535809 | 5.2:+29150133 | None:intergenic |
TCTGATGATGGATCACAAGC+TGG | 0.543914 | 5.2:-29151420 | MS.gene032825:CDS |
TCATCAGATAAATCTTCCTC+AGG | 0.549156 | 5.2:+29151435 | None:intergenic |
CACAAGCTGGAGAGAAGAAG+AGG | 0.557400 | 5.2:-29151407 | MS.gene032825:CDS |
AGCTGAGCAATTCCACCTGA+AGG | 0.558857 | 5.2:+29150090 | None:intergenic |
TGTGGTATGGATGATCAAGC+TGG | 0.559995 | 5.2:-29150003 | MS.gene032825:CDS |
AACCATATAGCAACTTGTCT+AGG | 0.569003 | 5.2:+29151279 | None:intergenic |
TATATGGTTTCAAAATAGAA+GGG | 0.590755 | 5.2:-29151265 | MS.gene032825:CDS |
AAATGTTGTTGCTCCAACCA+TGG | 0.592621 | 5.2:+29149973 | None:intergenic |
CCACCTGAAGGCCTAGCAGA+AGG | 0.595631 | 5.2:+29150102 | None:intergenic |
CCTGAAGGCCTAGCAGAAGG+TGG | 0.606372 | 5.2:+29150105 | None:intergenic |
AAGCTGGAGAGAAGAAGAGG+AGG | 0.613532 | 5.2:-29151404 | MS.gene032825:CDS |
GAACAGTTCAGATATCAAGT+TGG | 0.615882 | 5.2:-29150199 | MS.gene032825:CDS |
TAGATGGAAGACAAAGCAGT+TGG | 0.627956 | 5.2:-29151241 | MS.gene032825:CDS |
GTAATAAGCTTGAGCCTGAG+AGG | 0.633803 | 5.2:-29151335 | MS.gene032825:CDS |
CCTTCTGCTAGGCCTTCAGG+TGG | 0.640058 | 5.2:-29150102 | MS.gene032825:CDS |
GTATGTTGGTGTGTAGAAAG+AGG | 0.664598 | 5.2:+29150147 | None:intergenic |
AACCTGAACAAAGAAACAGA+AGG | 0.692102 | 5.2:-29150243 | MS.gene032825:CDS |
AGAAGAAGCAAATATACCTG+AGG | 0.692511 | 5.2:-29151451 | MS.gene032825:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAATACAAAAGAAAATA+TGG | + | chr5.2:29151105-29151124 | None:intergenic | 10.0% |
!! | TAAAGTACAATATATTTAAT+TGG | + | chr5.2:29150564-29150583 | None:intergenic | 10.0% |
!!! | TTATTATTTTTCATAACAAT+GGG | - | chr5.2:29150617-29150636 | MS.gene032825:intron | 10.0% |
!!! | AAGAAAATATGGTTTTAAAT+TGG | + | chr5.2:29151094-29151113 | None:intergenic | 15.0% |
!!! | ATCTTGATTAATTTACTTTT+AGG | + | chr5.2:29150832-29150851 | None:intergenic | 15.0% |
!!! | CGGTTAATTTTTTTTTTTAA+CGG | + | chr5.2:29150508-29150527 | None:intergenic | 15.0% |
!!! | GTTATTATTTTTCATAACAA+TGG | - | chr5.2:29150616-29150635 | MS.gene032825:intron | 15.0% |
!!! | TTTTAATTTGTTACAGATAT+TGG | - | chr5.2:29151148-29151167 | MS.gene032825:intron | 15.0% |
!! | TATATGGTTTCAAAATAGAA+GGG | - | chr5.2:29150181-29150200 | MS.gene032825:CDS | 20.0% |
!! | TGAAGTGAAAATAAAATCAT+TGG | + | chr5.2:29150855-29150874 | None:intergenic | 20.0% |
!!! | AATATGGTTTTAAATTGGTT+CGG | + | chr5.2:29151089-29151108 | None:intergenic | 20.0% |
!!! | ATGAGTATGATTTTGAATTT+CGG | + | chr5.2:29150528-29150547 | None:intergenic | 20.0% |
!!! | CTATTATATTACAGTTTTAG+AGG | - | chr5.2:29150354-29150373 | MS.gene032825:intron | 20.0% |
!!! | GTATTAATTTGTGTTCTTAT+AGG | - | chr5.2:29151116-29151135 | MS.gene032825:intron | 20.0% |
!!! | TCTCTAGAAACTTTATAATA+TGG | + | chr5.2:29150935-29150954 | None:intergenic | 20.0% |
!!! | TTAATTTACTTTTAGGTGAT+TGG | + | chr5.2:29150825-29150844 | None:intergenic | 20.0% |
! | ATGACTTCTTTCTCTTAAAT+AGG | - | chr5.2:29150875-29150894 | MS.gene032825:intron | 25.0% |
! | CTATATGGTTTCAAAATAGA+AGG | - | chr5.2:29150180-29150199 | MS.gene032825:CDS | 25.0% |
!! | TAAGATGAGACATTTTTATG+TGG | + | chr5.2:29150912-29150931 | None:intergenic | 25.0% |
!!! | TAAAGTTGATGTTAGAGAAT+AGG | + | chr5.2:29150786-29150805 | None:intergenic | 25.0% |
CCTCGAAAACTATTATATTG+AGG | + | chr5.2:29150994-29151013 | None:intergenic | 30.0% | |
GTCTTTACATATGACAAACA+AGG | + | chr5.2:29150465-29150484 | None:intergenic | 30.0% | |
GTTTGTCATATGTAAAGACT+TGG | - | chr5.2:29150466-29150485 | MS.gene032825:intron | 30.0% | |
TCTTTGACCATTTGAATTTC+TGG | + | chr5.2:29151401-29151420 | None:intergenic | 30.0% | |
! | AGTTTAAGCAACATGTTTTG+TGG | - | chr5.2:29151425-29151444 | MS.gene032825:CDS | 30.0% |
! | CCTCAATATAATAGTTTTCG+AGG | - | chr5.2:29150991-29151010 | MS.gene032825:intron | 30.0% |
!!! | AGTTTTAGAGGTTTATGCAA+CGG | - | chr5.2:29150366-29150385 | MS.gene032825:intron | 30.0% |
AACCATATAGCAACTTGTCT+AGG | + | chr5.2:29150170-29150189 | None:intergenic | 35.0% | |
AACCTAGACAAGTTGCTATA+TGG | - | chr5.2:29150165-29150184 | MS.gene032825:CDS | 35.0% | |
AACCTGAACAAAGAAACAGA+AGG | - | chr5.2:29151203-29151222 | MS.gene032825:CDS | 35.0% | |
AGAAGAAGCAAATATACCTG+AGG | - | chr5.2:29149995-29150014 | MS.gene032825:CDS | 35.0% | |
CAGCGTAATTAACTGAAGTT+TGG | - | chr5.2:29150435-29150454 | MS.gene032825:intron | 35.0% | |
GAACAGTTCAGATATCAAGT+TGG | - | chr5.2:29151247-29151266 | MS.gene032825:CDS | 35.0% | |
GAGGAAGATTTATCTGATGA+TGG | - | chr5.2:29150014-29150033 | MS.gene032825:CDS | 35.0% | |
GATGTTAGAGAATAGGTGAA+AGG | + | chr5.2:29150779-29150798 | None:intergenic | 35.0% | |
TAGAGAATAGGTGAAAGGAA+AGG | + | chr5.2:29150774-29150793 | None:intergenic | 35.0% | |
TCATCAGATAAATCTTCCTC+AGG | + | chr5.2:29150014-29150033 | None:intergenic | 35.0% | |
TTCAAAATAGAAGGGCTAGA+TGG | - | chr5.2:29150189-29150208 | MS.gene032825:CDS | 35.0% | |
TTCAAGGCCAGAAATTCAAA+TGG | - | chr5.2:29151391-29151410 | MS.gene032825:CDS | 35.0% | |
! | AAACCTCAGCTTGAAGTTTT+TGG | + | chr5.2:29150304-29150323 | None:intergenic | 35.0% |
! | AAGCAACATGTTTTGTGGTA+TGG | - | chr5.2:29151430-29151449 | MS.gene032825:CDS | 35.0% |
! | AGCTTTTCCAAACTTCTTCA+AGG | - | chr5.2:29151375-29151394 | MS.gene032825:CDS | 35.0% |
! | ATCCTTCTGTTTCTTTGTTC+AGG | + | chr5.2:29151208-29151227 | None:intergenic | 35.0% |
! | TTTTCATCAGGGATTGAACT+TGG | - | chr5.2:29149972-29149991 | MS.gene032825:CDS | 35.0% |
!! | TTCAGGTTGATTGATTCTGT+TGG | + | chr5.2:29151191-29151210 | None:intergenic | 35.0% |
!!! | CTTGAGAAGAGTTTTGAACT+CGG | - | chr5.2:29150089-29150108 | MS.gene032825:CDS | 35.0% |
AAATGTTGTTGCTCCAACCA+TGG | + | chr5.2:29151476-29151495 | None:intergenic | 40.0% | |
GAACCAAAAACTTCAAGCTG+AGG | - | chr5.2:29150298-29150317 | MS.gene032825:intron | 40.0% | |
GAAGAAGAGGAGGCTTAATA+TGG | - | chr5.2:29150052-29150071 | MS.gene032825:CDS | 40.0% | |
GTATGTTGGTGTGTAGAAAG+AGG | + | chr5.2:29151302-29151321 | None:intergenic | 40.0% | |
TAGATGGAAGACAAAGCAGT+TGG | - | chr5.2:29150205-29150224 | MS.gene032825:CDS | 40.0% | |
! | TGGATGATCAAGCTGGATTT+TGG | - | chr5.2:29151450-29151469 | MS.gene032825:CDS | 40.0% |
!! | AGGTTCTGCTTGTTGTATGT+TGG | + | chr5.2:29151316-29151335 | None:intergenic | 40.0% |
!! | TTTCTGGCCTTGAAGAAGTT+TGG | + | chr5.2:29151385-29151404 | None:intergenic | 40.0% |
GAAAGAGGACTATCACTTGC+TGG | + | chr5.2:29151287-29151306 | None:intergenic | 45.0% | |
GTAATAAGCTTGAGCCTGAG+AGG | - | chr5.2:29150111-29150130 | MS.gene032825:CDS | 45.0% | |
TGTGGTATGGATGATCAAGC+TGG | - | chr5.2:29151443-29151462 | MS.gene032825:CDS | 45.0% | |
!! | ATCAAGCTGGATTTTGGCCA+TGG | - | chr5.2:29151456-29151475 | MS.gene032825:CDS | 45.0% |
!! | TCTGATGATGGATCACAAGC+TGG | - | chr5.2:29150026-29150045 | MS.gene032825:CDS | 45.0% |
!! | TTGGTTCGGTTCTAGTTTCG+CGG | + | chr5.2:29151075-29151094 | None:intergenic | 45.0% |
AAGCTGGAGAGAAGAAGAGG+AGG | - | chr5.2:29150042-29150061 | MS.gene032825:CDS | 50.0% | |
AGCTGAGCAATTCCACCTGA+AGG | + | chr5.2:29151359-29151378 | None:intergenic | 50.0% | |
CACAAGCTGGAGAGAAGAAG+AGG | - | chr5.2:29150039-29150058 | MS.gene032825:CDS | 50.0% | |
CCTAGCAGAAGGTGGAAAGA+AGG | + | chr5.2:29151336-29151355 | None:intergenic | 50.0% | |
CCTTCTTTCCACCTTCTGCT+AGG | - | chr5.2:29151333-29151352 | MS.gene032825:CDS | 50.0% | |
! | GCAAGCTGCATTTTCCTCTC+AGG | + | chr5.2:29150128-29150147 | None:intergenic | 50.0% |
!! | AGCTGGATTTTGGCCATGGT+TGG | - | chr5.2:29151460-29151479 | MS.gene032825:CDS | 50.0% |
CCACCTGAAGGCCTAGCAGA+AGG | + | chr5.2:29151347-29151366 | None:intergenic | 60.0% | |
CCACCTTCTGCTAGGCCTTC+AGG | - | chr5.2:29151341-29151360 | MS.gene032825:CDS | 60.0% | |
CCTGAAGGCCTAGCAGAAGG+TGG | + | chr5.2:29151344-29151363 | None:intergenic | 60.0% | |
CCTTCTGCTAGGCCTTCAGG+TGG | - | chr5.2:29151344-29151363 | MS.gene032825:CDS | 60.0% | |
TCGCGGCAAGAAACTGCGCG+TGG | + | chr5.2:29151058-29151077 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 29149966 | 29151502 | 29149966 | ID=MS.gene032825 |
chr5.2 | mRNA | 29149966 | 29151502 | 29149966 | ID=MS.gene032825.t1;Parent=MS.gene032825 |
chr5.2 | exon | 29151149 | 29151502 | 29151149 | ID=MS.gene032825.t1.exon1;Parent=MS.gene032825.t1 |
chr5.2 | CDS | 29151149 | 29151502 | 29151149 | ID=cds.MS.gene032825.t1;Parent=MS.gene032825.t1 |
chr5.2 | exon | 29149966 | 29150304 | 29149966 | ID=MS.gene032825.t1.exon2;Parent=MS.gene032825.t1 |
chr5.2 | CDS | 29149966 | 29150304 | 29149966 | ID=cds.MS.gene032825.t1;Parent=MS.gene032825.t1 |
Gene Sequence |
Protein sequence |