Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032839.t1 | XP_003613691.1 | 91.9 | 393 | 27 | 3 | 1 | 390 | 1 | 391 | 2.00E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032839.t1 | Q93Z00 | 84.0 | 100 | 15 | 1 | 66 | 164 | 116 | 215 | 7.5e-39 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032839.t1 | G7KCJ2 | 91.9 | 393 | 27 | 3 | 1 | 390 | 1 | 391 | 1.4e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032839.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032839.t1 | MTR_5g039600 | 94.937 | 395 | 15 | 3 | 1 | 392 | 1 | 393 | 0.0 | 664 |
| MS.gene032839.t1 | MTR_4g108370 | 47.738 | 442 | 152 | 19 | 16 | 410 | 27 | 436 | 3.06e-92 | 285 |
| MS.gene032839.t1 | MTR_2g006150 | 65.101 | 149 | 36 | 5 | 21 | 167 | 91 | 225 | 1.98e-50 | 176 |
| MS.gene032839.t1 | MTR_2g006150 | 70.000 | 130 | 28 | 4 | 21 | 148 | 91 | 211 | 2.99e-50 | 177 |
| MS.gene032839.t1 | MTR_7g028160 | 59.677 | 124 | 33 | 3 | 55 | 178 | 38 | 144 | 2.17e-39 | 142 |
| MS.gene032839.t1 | MTR_1g114380 | 71.277 | 94 | 18 | 2 | 50 | 139 | 17 | 105 | 3.07e-38 | 139 |
| MS.gene032839.t1 | MTR_8g033070 | 79.221 | 77 | 16 | 0 | 63 | 139 | 76 | 152 | 6.90e-37 | 137 |
| MS.gene032839.t1 | MTR_1g038650 | 78.205 | 78 | 12 | 1 | 58 | 135 | 28 | 100 | 5.41e-36 | 132 |
| MS.gene032839.t1 | MTR_1g063870 | 79.412 | 68 | 14 | 0 | 62 | 129 | 44 | 111 | 1.76e-33 | 124 |
| MS.gene032839.t1 | MTR_1g101810 | 67.059 | 85 | 28 | 0 | 64 | 148 | 61 | 145 | 6.15e-33 | 127 |
| MS.gene032839.t1 | MTR_1g101810 | 67.059 | 85 | 28 | 0 | 64 | 148 | 91 | 175 | 1.11e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032839.t1 | AT3G47620 | 45.808 | 334 | 114 | 13 | 58 | 352 | 108 | 413 | 1.56e-51 | 180 |
| MS.gene032839.t1 | AT1G69690 | 72.222 | 126 | 16 | 2 | 16 | 136 | 10 | 121 | 2.27e-51 | 176 |
| MS.gene032839.t1 | AT1G58100 | 88.235 | 85 | 10 | 0 | 64 | 148 | 57 | 141 | 1.71e-46 | 165 |
| MS.gene032839.t1 | AT1G35560 | 88.372 | 86 | 9 | 1 | 63 | 148 | 52 | 136 | 2.23e-44 | 157 |
| MS.gene032839.t1 | AT1G72010 | 87.342 | 79 | 10 | 0 | 64 | 142 | 60 | 138 | 7.56e-42 | 152 |
| MS.gene032839.t1 | AT2G45680 | 76.471 | 85 | 20 | 0 | 60 | 144 | 68 | 152 | 1.47e-38 | 142 |
| MS.gene032839.t1 | AT5G51910 | 74.699 | 83 | 21 | 0 | 57 | 139 | 47 | 129 | 1.68e-37 | 138 |
| MS.gene032839.t1 | AT5G51910 | 74.699 | 83 | 21 | 0 | 57 | 139 | 47 | 129 | 1.68e-37 | 138 |
| MS.gene032839.t1 | AT5G23280 | 74.390 | 82 | 16 | 1 | 58 | 139 | 35 | 111 | 1.09e-36 | 134 |
| MS.gene032839.t1 | AT3G27010 | 80.000 | 75 | 15 | 0 | 54 | 128 | 65 | 139 | 1.81e-35 | 133 |
| MS.gene032839.t1 | AT3G27010 | 80.000 | 75 | 15 | 0 | 54 | 128 | 65 | 139 | 1.81e-35 | 133 |
| MS.gene032839.t1 | AT5G08330 | 73.494 | 83 | 17 | 1 | 58 | 140 | 27 | 104 | 2.83e-35 | 130 |
| MS.gene032839.t1 | AT2G37000 | 77.419 | 62 | 14 | 0 | 65 | 126 | 41 | 102 | 1.11e-27 | 108 |
| MS.gene032839.t1 | AT5G41030 | 58.228 | 79 | 27 | 1 | 51 | 129 | 58 | 130 | 1.63e-26 | 107 |
| MS.gene032839.t1 | AT1G58100 | 62.353 | 85 | 8 | 1 | 64 | 148 | 57 | 117 | 8.09e-24 | 102 |
| MS.gene032839.t1 | AT3G45150 | 61.290 | 62 | 24 | 0 | 64 | 125 | 14 | 75 | 2.26e-21 | 90.9 |
Find 122 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTATTATCACAGAATA+TGG | 0.188383 | 5.4:-29312329 | MS.gene032839:CDS |
| TAAAAGCTGAAGAGGGAAAT+TGG | 0.195439 | 5.4:+29313062 | None:intergenic |
| ATTCCTTCTGTTGGAAATAA+TGG | 0.210892 | 5.4:-29312166 | MS.gene032839:CDS |
| CCTGAACCTAGTTGACTTCC+AGG | 0.283489 | 5.4:+29312067 | None:intergenic |
| GTAATGGAAATGATCCAATT+TGG | 0.290902 | 5.4:-29312192 | MS.gene032839:CDS |
| AGGCCGCCGGCATGCGGATC+CGG | 0.296288 | 5.4:+29312875 | None:intergenic |
| ACAGAAGGAATTGCCCAAAT+TGG | 0.300472 | 5.4:+29312178 | None:intergenic |
| CTTCAAATACGGCAGCGTTT+TGG | 0.303402 | 5.4:-29312258 | MS.gene032839:CDS |
| AGCAGTACAGCCATCATTTC+CGG | 0.303951 | 5.4:+29312984 | None:intergenic |
| CTTCCAGGCATAAGATTCAT+TGG | 0.326078 | 5.4:+29312082 | None:intergenic |
| GGTGCTCATCATCAAAATAA+TGG | 0.332278 | 5.4:-29313099 | MS.gene032839:CDS |
| GAAAACACCGCCACCGCCTC+CGG | 0.337823 | 5.4:-29312424 | MS.gene032839:CDS |
| GGCCGGAATTGTTCCTGTTC+CGG | 0.338886 | 5.4:+29312747 | None:intergenic |
| AACCAAGGTGTTAATGTTAA+TGG | 0.358090 | 5.4:-29312217 | MS.gene032839:CDS |
| GTTCCAGCTCACGCGTGAGC+TGG | 0.358435 | 5.4:-29312839 | MS.gene032839:CDS |
| GTCCGTCAACCTTCGTGTGC+CGG | 0.377510 | 5.4:+29312905 | None:intergenic |
| AAGCATACTCAGATTGCTTT+CGG | 0.377552 | 5.4:+29312006 | None:intergenic |
| GGAAATAATGGTTTGTATAG+AGG | 0.384692 | 5.4:-29312154 | MS.gene032839:CDS |
| GTCATCGCTGCGACCGGAAC+AGG | 0.396764 | 5.4:-29312760 | MS.gene032839:CDS |
| GATTGAGTGGCTGCTTCAAC+AGG | 0.397983 | 5.4:-29312794 | MS.gene032839:CDS |
| CAGCATCACGGCGGAGGTGG+AGG | 0.398279 | 5.4:-29311926 | MS.gene032839:CDS |
| TACAAGCAAAACAAGAGCTT+CGG | 0.403614 | 5.4:-29312450 | MS.gene032839:CDS |
| TAATGGAAATGATCCAATTT+GGG | 0.409142 | 5.4:-29312191 | MS.gene032839:CDS |
| AGCTTAGAAACCGGGCTGAA+TGG | 0.413702 | 5.4:-29312609 | MS.gene032839:CDS |
| CACGGCGGAGGTGGAGGAGG+AGG | 0.417922 | 5.4:-29311920 | MS.gene032839:CDS |
| CTGGAACACTCTGGCGGCAC+AGG | 0.419048 | 5.4:+29312855 | None:intergenic |
| CATCACGGCGGAGGTGGAGG+AGG | 0.423459 | 5.4:-29311923 | MS.gene032839:CDS |
| TTTGGATGGTAACTGGTAAT+GGG | 0.423705 | 5.4:-29312240 | MS.gene032839:CDS |
| TTCAAGCCATGCTTCAAATA+CGG | 0.431597 | 5.4:-29312269 | MS.gene032839:CDS |
| AACATTGCTGATAAAGAAGA+AGG | 0.434505 | 5.4:+29312502 | None:intergenic |
| GACCGGAACAGGAACAATTC+CGG | 0.436306 | 5.4:-29312749 | MS.gene032839:CDS |
| AAAAGCTGAAGAGGGAAATT+GGG | 0.437875 | 5.4:+29313063 | None:intergenic |
| AAGCAATCTGAGTATGCTTT+CGG | 0.438504 | 5.4:-29312002 | MS.gene032839:CDS |
| GAGGGAAATTGGGTCTGCTT+CGG | 0.440519 | 5.4:+29313073 | None:intergenic |
| GCTTAGAAACCGGGCTGAAT+GGG | 0.442453 | 5.4:-29312608 | MS.gene032839:CDS |
| ATTTGGGCAATTCCTTCTGT+TGG | 0.444072 | 5.4:-29312175 | MS.gene032839:CDS |
| GGAGCTATGTCATCTCCTAA+TGG | 0.444498 | 5.4:-29312133 | MS.gene032839:CDS |
| GGCGGAGGATTTGAATTGTT+AGG | 0.445132 | 5.4:-29312397 | MS.gene032839:CDS |
| GGACAGCATCACGGCGGAGG+TGG | 0.447617 | 5.4:-29311929 | MS.gene032839:CDS |
| GTCCCAGCTCACGCGTGAGC+TGG | 0.449479 | 5.4:+29312836 | None:intergenic |
| CGACGGCTCAGCTTAGAAAC+CGG | 0.451524 | 5.4:-29312618 | MS.gene032839:CDS |
| GTCGAAGCACGCTTCGGCGG+AGG | 0.452958 | 5.4:+29312934 | None:intergenic |
| GTTTGTCGAAATCTGCCTAT+AGG | 0.456835 | 5.4:+29311970 | None:intergenic |
| CCGGTCGCAGCGATGACGGC+TGG | 0.458247 | 5.4:+29312766 | None:intergenic |
| AATATATCTCTTAGAAGCTC+AGG | 0.459346 | 5.4:-29312709 | MS.gene032839:CDS |
| CCTGGAAGTCAACTAGGTTC+AGG | 0.459463 | 5.4:-29312067 | MS.gene032839:CDS |
| TATTTGTTACAATCAAATGT+AGG | 0.463489 | 5.4:-29312301 | MS.gene032839:CDS |
| ACAAGCAAAACAAGAGCTTC+GGG | 0.465254 | 5.4:-29312449 | MS.gene032839:CDS |
| ATCGTCGGCAGTGGAGGAGG+AGG | 0.467543 | 5.4:-29312043 | MS.gene032839:CDS |
| GTTAATGTTAATGGTGGTAA+TGG | 0.467651 | 5.4:-29312208 | MS.gene032839:CDS |
| TTCCAGCTCACGCGTGAGCT+GGG | 0.468128 | 5.4:-29312838 | MS.gene032839:CDS |
| GGTGGAGGAGGAGGAGATGA+TGG | 0.469014 | 5.4:-29311911 | MS.gene032839:CDS |
| GTCGGCAGTGGAGGAGGAGG+AGG | 0.469417 | 5.4:-29312040 | MS.gene032839:CDS |
| CACCATTAACATTAACACCT+TGG | 0.473185 | 5.4:+29312215 | None:intergenic |
| CTTATGCCTGGAAGTCAACT+AGG | 0.475042 | 5.4:-29312073 | MS.gene032839:CDS |
| AAAACACCGCCACCGCCTCC+GGG | 0.480097 | 5.4:-29312423 | MS.gene032839:CDS |
| GGTTGAACAAGGTTGTTCTT+CGG | 0.480944 | 5.4:+29313008 | None:intergenic |
| GGCAGTGGAGGAGGAGGAGG+TGG | 0.486827 | 5.4:-29312037 | MS.gene032839:CDS |
| ACTCTGGCGGCACAGGCCGC+CGG | 0.488107 | 5.4:+29312862 | None:intergenic |
| AAACGGTATGTCAGATTCAT+CGG | 0.488724 | 5.4:-29311951 | MS.gene032839:CDS |
| TTGTAGCTGATGATTCTAGA+AGG | 0.490333 | 5.4:-29312552 | MS.gene032839:CDS |
| TCAGATTCAGATGGAAGCAT+AGG | 0.491711 | 5.4:-29312373 | MS.gene032839:CDS |
| TCTTTCGTCGAAGCACGCTT+CGG | 0.491715 | 5.4:+29312928 | None:intergenic |
| TTCATGAAATGAAATCCATT+AGG | 0.492064 | 5.4:+29312118 | None:intergenic |
| GTCGCGGAGGAGAACGAGCT+AGG | 0.495808 | 5.4:+29312637 | None:intergenic |
| GGAATCGTCGGCAGTGGAGG+AGG | 0.498316 | 5.4:-29312046 | MS.gene032839:CDS |
| TGTTCCGGTCGCAGCGATGA+CGG | 0.498430 | 5.4:+29312762 | None:intergenic |
| TGTTCAACCACCGGAAATGA+TGG | 0.498630 | 5.4:-29312994 | MS.gene032839:CDS |
| GTTGTTCTTCGGAGACATCT+AGG | 0.503499 | 5.4:+29313019 | None:intergenic |
| ATTTGTTACAATCAAATGTA+GGG | 0.504618 | 5.4:-29312300 | MS.gene032839:CDS |
| CGGCACAGGCCGCCGGCATG+CGG | 0.505669 | 5.4:+29312869 | None:intergenic |
| TTCAAATCCTCCGCCACCCC+CGG | 0.505699 | 5.4:+29312405 | None:intergenic |
| GTATTTGAAGCATGGCTTGA+AGG | 0.510350 | 5.4:+29312271 | None:intergenic |
| AGGCCGCCGGATCCGCATGC+CGG | 0.515715 | 5.4:-29312881 | MS.gene032839:CDS |
| CCAGCCGTCATCGCTGCGAC+CGG | 0.516223 | 5.4:-29312766 | MS.gene032839:CDS |
| TATATTAAGTGAAGTGAAGT+TGG | 0.518840 | 5.4:+29312726 | None:intergenic |
| TTTCGGCTATGAATGCCTAT+AGG | 0.521533 | 5.4:-29311985 | MS.gene032839:CDS |
| CCGCCGGATCCGCATGCCGG+CGG | 0.521997 | 5.4:-29312878 | MS.gene032839:CDS |
| GACCGGCACACGAAGGTTGA+CGG | 0.523997 | 5.4:-29312907 | MS.gene032839:CDS |
| GGTTCAGGAATCGTCGGCAG+TGG | 0.530991 | 5.4:-29312052 | MS.gene032839:CDS |
| TCTCCAATGAATCTTATGCC+TGG | 0.535265 | 5.4:-29312085 | MS.gene032839:CDS |
| TCGGGACAGCATCACGGCGG+AGG | 0.536859 | 5.4:-29311932 | MS.gene032839:CDS |
| AGCGTGCTTCGACGAAAGAC+CGG | 0.538504 | 5.4:-29312924 | MS.gene032839:CDS |
| GAATTATTATCACAGAATAT+GGG | 0.542760 | 5.4:-29312328 | MS.gene032839:CDS |
| TCATTTCCGGTGGTTGAACA+AGG | 0.546186 | 5.4:+29312997 | None:intergenic |
| AGCACGATCATGGAATTTGA+AGG | 0.546398 | 5.4:-29313120 | None:intergenic |
| CCGCCGGCATGCGGATCCGG+CGG | 0.547046 | 5.4:+29312878 | None:intergenic |
| AAACCATTATTTCCAACAGA+AGG | 0.547272 | 5.4:+29312163 | None:intergenic |
| CACACGAAGGTTGACGGACG+AGG | 0.549512 | 5.4:-29312901 | MS.gene032839:CDS |
| AACGGTATGTCAGATTCATC+GGG | 0.551825 | 5.4:-29311950 | MS.gene032839:CDS |
| TCAGGAATCGTCGGCAGTGG+AGG | 0.556738 | 5.4:-29312049 | MS.gene032839:CDS |
| TATAGGCAGATTTCGACAAA+CGG | 0.560561 | 5.4:-29311968 | MS.gene032839:CDS |
| TTAAGTGAAGTGAAGTTGGC+CGG | 0.564822 | 5.4:+29312730 | None:intergenic |
| TTCGTCGAAGCACGCTTCGG+CGG | 0.568824 | 5.4:+29312931 | None:intergenic |
| AGGTTGACGGACGAGGCCGC+CGG | 0.569788 | 5.4:-29312894 | MS.gene032839:CDS |
| CAACTAGGTTCAGGAATCGT+CGG | 0.570415 | 5.4:-29312058 | MS.gene032839:CDS |
| ACGCTGCCGTATTTGAAGCA+TGG | 0.572979 | 5.4:+29312263 | None:intergenic |
| TTGTTAGGTTCAGATTCAGA+TGG | 0.580560 | 5.4:-29312382 | MS.gene032839:CDS |
| ACGCGTGAGCTGGAACACTC+TGG | 0.580832 | 5.4:+29312846 | None:intergenic |
| CAGATTCAGATGGAAGCATA+GGG | 0.583229 | 5.4:-29312372 | MS.gene032839:CDS |
| TAGTTCTGTCCCATTCAGCC+CGG | 0.583900 | 5.4:+29312599 | None:intergenic |
| TCAAGCAGTCAACATTCCTA+AGG | 0.586300 | 5.4:-29311881 | None:intergenic |
| GACGGCTCAGCTTAGAAACC+GGG | 0.596694 | 5.4:-29312617 | MS.gene032839:CDS |
| GAGCTGGGACATAAATCAGA+TGG | 0.597190 | 5.4:-29312823 | MS.gene032839:CDS |
| GAACAACCTTGTTCAACCAC+CGG | 0.600339 | 5.4:-29313003 | MS.gene032839:CDS |
| CAAGGTGTTAATGTTAATGG+TGG | 0.607105 | 5.4:-29312214 | MS.gene032839:CDS |
| GAGTAGTAACTCTACCATGT+TGG | 0.612610 | 5.4:-29312530 | MS.gene032839:CDS |
| TCGCGGAGGAGAACGAGCTA+GGG | 0.615115 | 5.4:+29312638 | None:intergenic |
| ATAGTGAGAAGGCGCAGACA+TGG | 0.615199 | 5.4:+29312681 | None:intergenic |
| AAACACCGCCACCGCCTCCG+GGG | 0.624092 | 5.4:-29312422 | MS.gene032839:CDS |
| GTTTCTAAGCTGAGCCGTCG+CGG | 0.629887 | 5.4:+29312621 | None:intergenic |
| AACACCGCCACCGCCTCCGG+GGG | 0.636281 | 5.4:-29312421 | MS.gene032839:CDS |
| TTACCTCGAAAATAGTGAGA+AGG | 0.638869 | 5.4:+29312670 | None:intergenic |
| CAGATGGCGAGACGATTGAG+TGG | 0.645098 | 5.4:-29312807 | MS.gene032839:CDS |
| GATTCATCGGGACAGCATCA+CGG | 0.649257 | 5.4:-29311938 | MS.gene032839:CDS |
| AGTACAGCCATCATTTCCGG+TGG | 0.655208 | 5.4:+29312987 | None:intergenic |
| TAGCTCGTTCTCCTCCGCGA+CGG | 0.660506 | 5.4:-29312635 | MS.gene032839:CDS |
| GTAACTGGTAATGGGAACCA+AGG | 0.670023 | 5.4:-29312232 | MS.gene032839:CDS |
| TCTAAGCTGAGCCGTCGCGG+AGG | 0.685215 | 5.4:+29312624 | None:intergenic |
| GACGAAAGACCGGCACACGA+AGG | 0.698145 | 5.4:-29312914 | MS.gene032839:CDS |
| CGTGAGCTGGAACACTCTGG+CGG | 0.708891 | 5.4:+29312849 | None:intergenic |
| TCATCGGGACAGCATCACGG+CGG | 0.798879 | 5.4:-29311935 | MS.gene032839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATTATTATCACAGAATA+TGG | - | chr5.4:29312665-29312684 | MS.gene032839:CDS | 20.0% |
| !! | GAATTATTATCACAGAATAT+GGG | - | chr5.4:29312666-29312685 | MS.gene032839:CDS | 20.0% |
| !!! | ATTTGTTACAATCAAATGTA+GGG | - | chr5.4:29312694-29312713 | MS.gene032839:CDS | 20.0% |
| !!! | TATTTGTTACAATCAAATGT+AGG | - | chr5.4:29312693-29312712 | MS.gene032839:CDS | 20.0% |
| ! | TAATGGAAATGATCCAATTT+GGG | - | chr5.4:29312803-29312822 | MS.gene032839:CDS | 25.0% |
| ! | TATATTAAGTGAAGTGAAGT+TGG | + | chr5.4:29312271-29312290 | None:intergenic | 25.0% |
| ! | TTCATGAAATGAAATCCATT+AGG | + | chr5.4:29312879-29312898 | None:intergenic | 25.0% |
| AAACCATTATTTCCAACAGA+AGG | + | chr5.4:29312834-29312853 | None:intergenic | 30.0% | |
| AACATTGCTGATAAAGAAGA+AGG | + | chr5.4:29312495-29312514 | None:intergenic | 30.0% | |
| AATATATCTCTTAGAAGCTC+AGG | - | chr5.4:29312285-29312304 | MS.gene032839:CDS | 30.0% | |
| ATTCCTTCTGTTGGAAATAA+TGG | - | chr5.4:29312828-29312847 | MS.gene032839:CDS | 30.0% | |
| GTTAATGTTAATGGTGGTAA+TGG | - | chr5.4:29312786-29312805 | MS.gene032839:CDS | 30.0% | |
| ! | AACCAAGGTGTTAATGTTAA+TGG | - | chr5.4:29312777-29312796 | MS.gene032839:CDS | 30.0% |
| ! | GGAAATAATGGTTTGTATAG+AGG | - | chr5.4:29312840-29312859 | MS.gene032839:CDS | 30.0% |
| ! | GTAATGGAAATGATCCAATT+TGG | - | chr5.4:29312802-29312821 | MS.gene032839:CDS | 30.0% |
| !! | TTTTCTCTAAAAGCTGAAGA+GGG | + | chr5.4:29311942-29311961 | None:intergenic | 30.0% |
| !! | TTTTTCTCTAAAAGCTGAAG+AGG | + | chr5.4:29311943-29311962 | None:intergenic | 30.0% |
| AAAAGCTGAAGAGGGAAATT+GGG | + | chr5.4:29311934-29311953 | None:intergenic | 35.0% | |
| AAACGGTATGTCAGATTCAT+CGG | - | chr5.4:29313043-29313062 | MS.gene032839:CDS | 35.0% | |
| AAGCAATCTGAGTATGCTTT+CGG | - | chr5.4:29312992-29313011 | MS.gene032839:CDS | 35.0% | |
| AAGCATACTCAGATTGCTTT+CGG | + | chr5.4:29312991-29313010 | None:intergenic | 35.0% | |
| CACCATTAACATTAACACCT+TGG | + | chr5.4:29312782-29312801 | None:intergenic | 35.0% | |
| GGTGCTCATCATCAAAATAA+TGG | - | chr5.4:29311895-29311914 | MS.gene032839:CDS | 35.0% | |
| TAAAAGCTGAAGAGGGAAAT+TGG | + | chr5.4:29311935-29311954 | None:intergenic | 35.0% | |
| TACAAGCAAAACAAGAGCTT+CGG | - | chr5.4:29312544-29312563 | MS.gene032839:CDS | 35.0% | |
| TATAGGCAGATTTCGACAAA+CGG | - | chr5.4:29313026-29313045 | MS.gene032839:CDS | 35.0% | |
| TTACCTCGAAAATAGTGAGA+AGG | + | chr5.4:29312327-29312346 | None:intergenic | 35.0% | |
| TTCAAGCCATGCTTCAAATA+CGG | - | chr5.4:29312725-29312744 | MS.gene032839:CDS | 35.0% | |
| TTGTAGCTGATGATTCTAGA+AGG | - | chr5.4:29312442-29312461 | MS.gene032839:CDS | 35.0% | |
| TTGTTAGGTTCAGATTCAGA+TGG | - | chr5.4:29312612-29312631 | MS.gene032839:CDS | 35.0% | |
| TTTGGATGGTAACTGGTAAT+GGG | - | chr5.4:29312754-29312773 | MS.gene032839:CDS | 35.0% | |
| ! | AGAAGAAGGATTTTCCAACA+TGG | + | chr5.4:29312481-29312500 | None:intergenic | 35.0% |
| ! | CAAGGTGTTAATGTTAATGG+TGG | - | chr5.4:29312780-29312799 | MS.gene032839:CDS | 35.0% |
| ! | TTTTGGATGGTAACTGGTAA+TGG | - | chr5.4:29312753-29312772 | MS.gene032839:CDS | 35.0% |
| AACGGTATGTCAGATTCATC+GGG | - | chr5.4:29313044-29313063 | MS.gene032839:CDS | 40.0% | |
| ACAAGCAAAACAAGAGCTTC+GGG | - | chr5.4:29312545-29312564 | MS.gene032839:CDS | 40.0% | |
| ACAGAAGGAATTGCCCAAAT+TGG | + | chr5.4:29312819-29312838 | None:intergenic | 40.0% | |
| ATTTGGGCAATTCCTTCTGT+TGG | - | chr5.4:29312819-29312838 | MS.gene032839:CDS | 40.0% | |
| CTTCCAGGCATAAGATTCAT+TGG | + | chr5.4:29312915-29312934 | None:intergenic | 40.0% | |
| GAAGCATAGGGAGAAAAAGA+AGG | - | chr5.4:29312634-29312653 | MS.gene032839:CDS | 40.0% | |
| GAGTAGTAACTCTACCATGT+TGG | - | chr5.4:29312464-29312483 | MS.gene032839:CDS | 40.0% | |
| GGTTGAACAAGGTTGTTCTT+CGG | + | chr5.4:29311989-29312008 | None:intergenic | 40.0% | |
| GTTTGTCGAAATCTGCCTAT+AGG | + | chr5.4:29313027-29313046 | None:intergenic | 40.0% | |
| TCTCCAATGAATCTTATGCC+TGG | - | chr5.4:29312909-29312928 | MS.gene032839:CDS | 40.0% | |
| TTAAGTGAAGTGAAGTTGGC+CGG | + | chr5.4:29312267-29312286 | None:intergenic | 40.0% | |
| TTTCGGCTATGAATGCCTAT+AGG | - | chr5.4:29313009-29313028 | MS.gene032839:CDS | 40.0% | |
| ! | CAGATTCAGATGGAAGCATA+GGG | - | chr5.4:29312622-29312641 | MS.gene032839:CDS | 40.0% |
| ! | GTATTTGAAGCATGGCTTGA+AGG | + | chr5.4:29312726-29312745 | None:intergenic | 40.0% |
| ! | TCAGATTCAGATGGAAGCAT+AGG | - | chr5.4:29312621-29312640 | MS.gene032839:CDS | 40.0% |
| AGCAGTACAGCCATCATTTC+CGG | + | chr5.4:29312013-29312032 | None:intergenic | 45.0% | |
| CAACTAGGTTCAGGAATCGT+CGG | - | chr5.4:29312936-29312955 | MS.gene032839:CDS | 45.0% | |
| CTTATGCCTGGAAGTCAACT+AGG | - | chr5.4:29312921-29312940 | MS.gene032839:CDS | 45.0% | |
| GAACAACCTTGTTCAACCAC+CGG | - | chr5.4:29311991-29312010 | MS.gene032839:CDS | 45.0% | |
| GAGCTGGGACATAAATCAGA+TGG | - | chr5.4:29312171-29312190 | MS.gene032839:CDS | 45.0% | |
| GGAGCTATGTCATCTCCTAA+TGG | - | chr5.4:29312861-29312880 | MS.gene032839:CDS | 45.0% | |
| GGCGGAGGATTTGAATTGTT+AGG | - | chr5.4:29312597-29312616 | MS.gene032839:CDS | 45.0% | |
| GTTGTTCTTCGGAGACATCT+AGG | + | chr5.4:29311978-29311997 | None:intergenic | 45.0% | |
| TCATTTCCGGTGGTTGAACA+AGG | + | chr5.4:29312000-29312019 | None:intergenic | 45.0% | |
| TGTTCAACCACCGGAAATGA+TGG | - | chr5.4:29312000-29312019 | MS.gene032839:CDS | 45.0% | |
| ! | CTTCAAATACGGCAGCGTTT+TGG | - | chr5.4:29312736-29312755 | MS.gene032839:CDS | 45.0% |
| !! | AAATACGGCAGCGTTTTGGA+TGG | - | chr5.4:29312740-29312759 | MS.gene032839:CDS | 45.0% |
| !! | GTAACTGGTAATGGGAACCA+AGG | - | chr5.4:29312762-29312781 | MS.gene032839:CDS | 45.0% |
| AGCTTAGAAACCGGGCTGAA+TGG | - | chr5.4:29312385-29312404 | MS.gene032839:CDS | 50.0% | |
| AGTACAGCCATCATTTCCGG+TGG | + | chr5.4:29312010-29312029 | None:intergenic | 50.0% | |
| CCTGGAAGTCAACTAGGTTC+AGG | - | chr5.4:29312927-29312946 | MS.gene032839:CDS | 50.0% | |
| GACCGGAACAGGAACAATTC+CGG | - | chr5.4:29312245-29312264 | MS.gene032839:CDS | 50.0% | |
| GAGGGAAATTGGGTCTGCTT+CGG | + | chr5.4:29311924-29311943 | None:intergenic | 50.0% | |
| GATTCATCGGGACAGCATCA+CGG | - | chr5.4:29313056-29313075 | MS.gene032839:CDS | 50.0% | |
| GATTGAGTGGCTGCTTCAAC+AGG | - | chr5.4:29312200-29312219 | MS.gene032839:CDS | 50.0% | |
| GCTTAGAAACCGGGCTGAAT+GGG | - | chr5.4:29312386-29312405 | MS.gene032839:CDS | 50.0% | |
| TCTTTCGTCGAAGCACGCTT+CGG | + | chr5.4:29312069-29312088 | None:intergenic | 50.0% | |
| ! | ACGCTGCCGTATTTGAAGCA+TGG | + | chr5.4:29312734-29312753 | None:intergenic | 50.0% |
| ! | ATAGTGAGAAGGCGCAGACA+TGG | + | chr5.4:29312316-29312335 | None:intergenic | 50.0% |
| ! | CCTGAACCTAGTTGACTTCC+AGG | + | chr5.4:29312930-29312949 | None:intergenic | 50.0% |
| ! | GCGCCTTCTCACTATTTTCG+AGG | - | chr5.4:29312321-29312340 | MS.gene032839:CDS | 50.0% |
| ! | TAGTTCTGTCCCATTCAGCC+CGG | + | chr5.4:29312398-29312417 | None:intergenic | 50.0% |
| !! | GCAGCGTTTTGGATGGTAAC+TGG | - | chr5.4:29312747-29312766 | MS.gene032839:CDS | 50.0% |
| AGCGTGCTTCGACGAAAGAC+CGG | - | chr5.4:29312070-29312089 | MS.gene032839:CDS | 55.0% | |
| CAGATGGCGAGACGATTGAG+TGG | - | chr5.4:29312187-29312206 | MS.gene032839:CDS | 55.0% | |
| CGACGGCTCAGCTTAGAAAC+CGG | - | chr5.4:29312376-29312395 | MS.gene032839:CDS | 55.0% | |
| GACGGCTCAGCTTAGAAACC+GGG | - | chr5.4:29312377-29312396 | MS.gene032839:CDS | 55.0% | |
| GGCCGGAATTGTTCCTGTTC+CGG | + | chr5.4:29312250-29312269 | None:intergenic | 55.0% | |
| GTTTCTAAGCTGAGCCGTCG+CGG | + | chr5.4:29312376-29312395 | None:intergenic | 55.0% | |
| ACGCGTGAGCTGGAACACTC+TGG | + | chr5.4:29312151-29312170 | None:intergenic | 60.0% | |
| CGTGAGCTGGAACACTCTGG+CGG | + | chr5.4:29312148-29312167 | None:intergenic | 60.0% | |
| GACCGGCACACGAAGGTTGA+CGG | - | chr5.4:29312087-29312106 | MS.gene032839:CDS | 60.0% | |
| GACGAAAGACCGGCACACGA+AGG | - | chr5.4:29312080-29312099 | MS.gene032839:CDS | 60.0% | |
| GGTGGAGGAGGAGGAGATGA+TGG | - | chr5.4:29313083-29313102 | MS.gene032839:CDS | 60.0% | |
| GGTTCAGGAATCGTCGGCAG+TGG | - | chr5.4:29312942-29312961 | MS.gene032839:CDS | 60.0% | |
| GTCCGTCAACCTTCGTGTGC+CGG | + | chr5.4:29312092-29312111 | None:intergenic | 60.0% | |
| TAGCTCGTTCTCCTCCGCGA+CGG | - | chr5.4:29312359-29312378 | MS.gene032839:CDS | 60.0% | |
| TCAGGAATCGTCGGCAGTGG+AGG | - | chr5.4:29312945-29312964 | MS.gene032839:CDS | 60.0% | |
| TCATCGGGACAGCATCACGG+CGG | - | chr5.4:29313059-29313078 | MS.gene032839:CDS | 60.0% | |
| TCGCGGAGGAGAACGAGCTA+GGG | + | chr5.4:29312359-29312378 | None:intergenic | 60.0% | |
| TGTTCCGGTCGCAGCGATGA+CGG | + | chr5.4:29312235-29312254 | None:intergenic | 60.0% | |
| TTCAAATCCTCCGCCACCCC+CGG | + | chr5.4:29312592-29312611 | None:intergenic | 60.0% | |
| TTCCAGCTCACGCGTGAGCT+GGG | - | chr5.4:29312156-29312175 | MS.gene032839:CDS | 60.0% | |
| TTCGTCGAAGCACGCTTCGG+CGG | + | chr5.4:29312066-29312085 | None:intergenic | 60.0% | |
| ! | CACACGAAGGTTGACGGACG+AGG | - | chr5.4:29312093-29312112 | MS.gene032839:CDS | 60.0% |
| !! | TCGGCGGAGGCTTTTTCTGC+TGG | + | chr5.4:29312050-29312069 | None:intergenic | 60.0% |
| AAAACACCGCCACCGCCTCC+GGG | - | chr5.4:29312571-29312590 | MS.gene032839:CDS | 65.0% | |
| ATCGTCGGCAGTGGAGGAGG+AGG | - | chr5.4:29312951-29312970 | MS.gene032839:CDS | 65.0% | |
| CTGGAACACTCTGGCGGCAC+AGG | + | chr5.4:29312142-29312161 | None:intergenic | 65.0% | |
| GAAAACACCGCCACCGCCTC+CGG | - | chr5.4:29312570-29312589 | MS.gene032839:CDS | 65.0% | |
| GGAATCGTCGGCAGTGGAGG+AGG | - | chr5.4:29312948-29312967 | MS.gene032839:CDS | 65.0% | |
| GTCATCGCTGCGACCGGAAC+AGG | - | chr5.4:29312234-29312253 | MS.gene032839:CDS | 65.0% | |
| GTCGCGGAGGAGAACGAGCT+AGG | + | chr5.4:29312360-29312379 | None:intergenic | 65.0% | |
| GTTCCAGCTCACGCGTGAGC+TGG | - | chr5.4:29312155-29312174 | MS.gene032839:CDS | 65.0% | |
| TCTAAGCTGAGCCGTCGCGG+AGG | + | chr5.4:29312373-29312392 | None:intergenic | 65.0% | |
| AAACACCGCCACCGCCTCCG+GGG | - | chr5.4:29312572-29312591 | MS.gene032839:CDS | 70.0% | |
| AAATCCTCCGCCACCCCCGG+AGG | + | chr5.4:29312589-29312608 | None:intergenic | 70.0% | |
| CAGCATCACGGCGGAGGTGG+AGG | - | chr5.4:29313068-29313087 | MS.gene032839:CDS | 70.0% | |
| CATCACGGCGGAGGTGGAGG+AGG | - | chr5.4:29313071-29313090 | MS.gene032839:CDS | 70.0% | |
| CCAGCCGTCATCGCTGCGAC+CGG | - | chr5.4:29312228-29312247 | MS.gene032839:CDS | 70.0% | |
| GGACAGCATCACGGCGGAGG+TGG | - | chr5.4:29313065-29313084 | MS.gene032839:CDS | 70.0% | |
| GGCAGTGGAGGAGGAGGAGG+TGG | - | chr5.4:29312957-29312976 | MS.gene032839:CDS | 70.0% | |
| GTCCCAGCTCACGCGTGAGC+TGG | + | chr5.4:29312161-29312180 | None:intergenic | 70.0% | |
| GTCGAAGCACGCTTCGGCGG+AGG | + | chr5.4:29312063-29312082 | None:intergenic | 70.0% | |
| GTCGGCAGTGGAGGAGGAGG+AGG | - | chr5.4:29312954-29312973 | MS.gene032839:CDS | 70.0% | |
| TCGGGACAGCATCACGGCGG+AGG | - | chr5.4:29313062-29313081 | MS.gene032839:CDS | 70.0% | |
| ! | AGGTTGACGGACGAGGCCGC+CGG | - | chr5.4:29312100-29312119 | MS.gene032839:CDS | 70.0% |
| AACACCGCCACCGCCTCCGG+GGG | - | chr5.4:29312573-29312592 | MS.gene032839:CDS | 75.0% | |
| ACTCTGGCGGCACAGGCCGC+CGG | + | chr5.4:29312135-29312154 | None:intergenic | 75.0% | |
| AGGCCGCCGGATCCGCATGC+CGG | - | chr5.4:29312113-29312132 | MS.gene032839:CDS | 75.0% | |
| AGGCCGCCGGCATGCGGATC+CGG | + | chr5.4:29312122-29312141 | None:intergenic | 75.0% | |
| CACGGCGGAGGTGGAGGAGG+AGG | - | chr5.4:29313074-29313093 | MS.gene032839:CDS | 75.0% | |
| ! | CCGGTCGCAGCGATGACGGC+TGG | + | chr5.4:29312231-29312250 | None:intergenic | 75.0% |
| ! | CCGCCGGATCCGCATGCCGG+CGG | - | chr5.4:29312116-29312135 | MS.gene032839:CDS | 80.0% |
| ! | CCGCCGGCATGCGGATCCGG+CGG | + | chr5.4:29312119-29312138 | None:intergenic | 80.0% |
| ! | CGGCACAGGCCGCCGGCATG+CGG | + | chr5.4:29312128-29312147 | None:intergenic | 80.0% |
| ! | TCCTCCGCCACCCCCGGAGG+CGG | + | chr5.4:29312586-29312605 | None:intergenic | 80.0% |
| ! | ACCGCCACCGCCTCCGGGGG+TGG | - | chr5.4:29312576-29312595 | MS.gene032839:CDS | 85.0% |
| ! | GCCACCCCCGGAGGCGGTGG+CGG | + | chr5.4:29312580-29312599 | None:intergenic | 85.0% |
| ! | GCCACCGCCTCCGGGGGTGG+CGG | - | chr5.4:29312579-29312598 | MS.gene032839:CDS | 85.0% |
| ! | TCCGCCACCCCCGGAGGCGG+TGG | + | chr5.4:29312583-29312602 | None:intergenic | 85.0% |
| !! | ACCGCCTCCGGGGGTGGCGG+AGG | - | chr5.4:29312582-29312601 | MS.gene032839:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 29311883 | 29313133 | 29311883 | ID=MS.gene032839 |
| chr5.4 | mRNA | 29311883 | 29313133 | 29311883 | ID=MS.gene032839.t1;Parent=MS.gene032839 |
| chr5.4 | exon | 29311883 | 29313133 | 29311883 | ID=MS.gene032839.t1.exon1;Parent=MS.gene032839.t1 |
| chr5.4 | CDS | 29311883 | 29313133 | 29311883 | ID=cds.MS.gene032839.t1;Parent=MS.gene032839.t1 |
| Gene Sequence |
| Protein sequence |
