AlfalfaGEDB | MS.gene03284

M. sativa cultivar XinJiangDaYe / MS.gene03284

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004713 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03284.t1	RHN64951.1	83	188	30	1	5	192	67	252	1.40E-79	305.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03284.t1	Q9LQQ8	63.7	190	66	2	3	192	46	232	2.1e-60	233.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03284.t1	A0A396IJB1	83.0	188	30	1	5	192	67	252	1.0e-79	305.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03284.t1	MTR_4g131900	81.675	191	33	1	2	192	42	230	4.33e-105	307
MS.gene03284.t1	MTR_2g095920	78.836	189	40	0	4	192	145	333	2.58e-101	301
MS.gene03284.t1	MTR_2g095880	76.963	191	43	1	3	192	30	220	1.40e-100	294
MS.gene03284.t1	MTR_2g095880	76.963	191	43	1	3	192	30	220	6.07e-100	295
MS.gene03284.t1	MTR_2g095950	67.213	183	46	1	10	192	20	188	2.09e-79	241
MS.gene03284.t1	MTR_2g095960	72.024	168	47	0	25	192	43	210	1.58e-77	236
MS.gene03284.t1	MTR_7g100500	67.550	151	49	0	42	192	52	202	6.63e-71	219
MS.gene03284.t1	MTR_1g067140	68.493	146	46	0	47	192	58	203	3.04e-69	215
MS.gene03284.t1	MTR_2g019990	68.493	146	46	0	47	192	73	218	2.21e-68	217
MS.gene03284.t1	MTR_1g117060	65.068	146	51	0	47	192	81	226	3.22e-64	205

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03284.t1	AT1G07870	69.880	166	48	1	27	192	69	232	6.73e-77	236
MS.gene03284.t1	AT2G28590	69.880	166	48	1	27	192	64	227	7.46e-77	233
MS.gene03284.t1	AT2G28590	69.880	166	48	1	27	192	64	227	5.39e-76	234
MS.gene03284.t1	AT1G07870	69.880	166	48	1	27	192	69	232	8.50e-76	237
MS.gene03284.t1	AT5G02800	67.808	146	47	0	47	192	57	202	3.74e-70	218
MS.gene03284.t1	AT5G18610	67.123	146	48	0	47	192	67	212	2.72e-67	214
MS.gene03284.t1	AT5G18610	67.123	146	48	0	47	192	67	212	2.72e-67	214
MS.gene03284.t1	AT5G18610	67.123	146	48	0	47	192	67	212	2.72e-67	214
MS.gene03284.t1	AT3G24790	65.517	145	50	0	48	192	32	176	3.11e-65	204
MS.gene03284.t1	AT3G24790	65.517	145	50	0	48	192	50	194	3.79e-65	205

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Find 38 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTTTGGCAAGGTTTATA+AGG	0.372075	6.2:-30101491	MS.gene03284:CDS
ACGAGAATGAGAATAGTTGA+TGG	0.479000	6.2:-30101220	MS.gene03284:CDS
AGAATTTGAATTTAATAGAT+CGG	0.430270	6.2:-30101609	MS.gene03284:CDS
AGGTCACGGTATATGACAAG+AGG	0.646179	6.2:+30101157	None:intergenic
ATAAAGCAACTTGACCCTGA+TGG	0.558686	6.2:-30101436	MS.gene03284:CDS
ATAGTTGATGGTGCAGCTAA+AGG	0.487654	6.2:-30101208	MS.gene03284:CDS
ATTCAAATTCTTCACGCCTA+AGG	0.475821	6.2:+30101621	None:intergenic
ATTCTCGTATTCCAATCTAG+TGG	0.602637	6.2:+30101235	None:intergenic
ATTGCTTTGTTGGTGAAGGA+AGG	0.535160	6.2:-30101510	MS.gene03284:CDS
ATTTGCATGATCTTTCTCCT+GGG	0.531047	6.2:-30101264	MS.gene03284:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACTTCAACAACAAATTCTT+TGG	+	chr6.2:30101883-30101902	None:intergenic	30.0%
GAACACTATCAATATTCCTT+AGG	-	chr6.2:30101645-30101664	MS.gene03284:CDS	30.0%
TAACATCGAGAAAATTAAGC+AGG	-	chr6.2:30101815-30101834	MS.gene03284:intron	30.0%
AAGGTTTGGCAAGGTTTATA+AGG	-	chr6.2:30101791-30101810	MS.gene03284:intron	35.0%
ACGAGAATGAGAATAGTTGA+TGG	-	chr6.2:30102062-30102081	MS.gene03284:intron	35.0%
ATTCAAATTCTTCACGCCTA+AGG	+	chr6.2:30101664-30101683	None:intergenic	35.0%
ATTCTCGTATTCCAATCTAG+TGG	+	chr6.2:30102050-30102069	None:intergenic	35.0%
ATTTGCATGATCTTTCTCCT+GGG	-	chr6.2:30102018-30102037	MS.gene03284:intron	35.0%
CGTTAAGAAGACCGAAAATA+AGG	-	chr6.2:30101572-30101591	MS.gene03284:CDS	35.0%
GATTATGAGTACATGCCTTT+GGG	-	chr6.2:30101981-30102000	MS.gene03284:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	30101150	30102154	30101150	ID=MS.gene03284
chr6.2	mRNA	30101150	30102154	30101150	ID=MS.gene03284.t1;Parent=MS.gene03284
chr6.2	exon	30102149	30102154	30102149	ID=MS.gene03284.t1.exon1;Parent=MS.gene03284.t1
chr6.2	CDS	30102149	30102154	30102149	ID=cds.MS.gene03284.t1;Parent=MS.gene03284.t1
chr6.2	exon	30101150	30101722	30101150	ID=MS.gene03284.t1.exon2;Parent=MS.gene03284.t1
chr6.2	CDS	30101150	30101722	30101150	ID=cds.MS.gene03284.t1;Parent=MS.gene03284.t1

Gene Sequence

>MS.gene03284

ATGGATGTATAAATGAAAACAATATTAAGTATCTACTTTTGAAATCAATAGAAGTGTCTCCCTGTTTTAAATCTAAATCCCTTTTATCAATCACCAAATGAATGTAAAAGAAAACAATATCGTGTATCTACTTTTGAAATCATTGTACCCAGATTGGCGTACCCAAATGAACTAAACAACAATCACCAAAAGTTTCTCGCTGTTTTAAATCTAAATTACTTTTTGTCAATCGTTGTACTAATTTTGCATGTTTATAAATTCAATTCTTCCATAGCTAAATAAAAAATTGATAATGTTTTTAACAAATGTAAATATTATTAATCGTATCCTGACTAAAATGAAATTCTTGATGTGCATGTGTCATATATCGATCAAAGATGATGAAAGTGAAGATGATTCTAAACATGATCAACTTTTCATGGCGTTAAGAAGACCGAAAATAAGGTTAAAGTTGATTTGAATTTGAATGTGAGTGAGAAAAGAGAAGATGGTTCTGAACACTATCAATATTCCTTAGGCGTGAAGAATTTGAATTTAATAGATCGGGTTTCCACGGATGTAAAAGTTGCAAAGACATTTACTTTTGATGAGCTTGCAGCCGCAACAGAGAATTTTAAGGCAGATTGCTTTGTTGGTGAAGGAAGGTTTGGCAAGGTTTATAAGGCTAACATCGAGAAAATTAAGCAGGTTGTTGCGATAAAGCAACTTGACCCTGATGGACTTCAAGGAACCAAAGAATTTGTTGTTGAAGTGTTAACACTTGGTTTGGCAGAACGCCCAAATCTTGTCAATTTATTAGGATTTTGTGCTGAGGGAGAGCAGAGACATTTGGATTATGAGTACATGCCTTTGGGATCTTTGGCGAATCATTTGCATGATCTTTCTCCTGGGGAAAAACCACTAGATTGGAATACGAGAATGAGAATAGTTGATGGTGCAGCTAAAGGTTTGGAGTATTTGCATGATAAAATGAAGCCTCTTGTCATATACCGTGACCTCAAGTAG

Protein sequence

>MS.gene03284.t1

MDTENKVKVDLNLNVSEKREDGSEHYQYSLGVKNLNLIDRVSTDVKVAKTFTFDELAAATENFKADCFVGEGRFGKVYKANIEKIKQVVAIKQLDPDGLQGTKEFVVEVLTLGLAERPNLVNLLGFCAEGEQRHLDYEYMPLGSLANHLHDLSPGEKPLDWNTRMRIVDGAAKGLEYLHDKMKPLVIYRDLK