Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032872.t1 | XP_003613728.2 | 82.1 | 319 | 31 | 2 | 1 | 319 | 54 | 346 | 1.40E-113 | 419.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032872.t1 | Q8RWD7 | 41.8 | 79 | 44 | 1 | 1 | 79 | 95 | 171 | 5.6e-10 | 66.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032872.t1 | G7KDV8 | 82.1 | 319 | 31 | 2 | 1 | 319 | 54 | 346 | 1.0e-113 | 419.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene032872.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032872.t1 | MTR_7g039520 | 82.132 | 319 | 31 | 2 | 1 | 319 | 54 | 346 | 0.0 | 521 |
MS.gene032872.t1 | MTR_5g040080 | 82.445 | 319 | 30 | 2 | 1 | 319 | 54 | 346 | 0.0 | 503 |
MS.gene032872.t1 | MTR_2g014410 | 71.273 | 275 | 38 | 3 | 43 | 317 | 42 | 275 | 2.63e-124 | 359 |
MS.gene032872.t1 | MTR_1g069015 | 29.565 | 115 | 74 | 2 | 1 | 114 | 59 | 167 | 3.31e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032872.t1 | AT1G58210 | 43.038 | 79 | 43 | 1 | 1 | 79 | 95 | 171 | 2.80e-14 | 72.4 |
Find 51 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTCTACAATCTTCTTCT+TGG | 0.222065 | 5.4:-29842712 | None:intergenic |
CTTATCCTCTACAATCTTCT+TGG | 0.224995 | 5.4:-29842745 | None:intergenic |
TTATAAATCACGCCAGTATT+TGG | 0.228010 | 5.4:-29842312 | None:intergenic |
ATCCTCTACAATCTTCTTCT+TGG | 0.277613 | 5.4:-29842775 | None:intergenic |
GTGATTTATAATGGTGAAAA+TGG | 0.304153 | 5.4:+29842324 | MS.gene032872:CDS |
GTGATTTCTAATGGTGAAAA+TGG | 0.304848 | 5.4:+29842534 | MS.gene032872:CDS |
CGGTTGGATTTCCACACAAT+TGG | 0.311637 | 5.4:+29842130 | MS.gene032872:CDS |
TTCAATTTCTTTGCGTAAAG+TGG | 0.326249 | 5.4:-29842648 | None:intergenic |
AAGTCACACGATGCTTAAAA+AGG | 0.345125 | 5.4:+29842848 | MS.gene032872:CDS |
GCCTCACGTACATCTCAAAA+TGG | 0.367820 | 5.4:+29841183 | MS.gene032872:CDS |
ACAGGTATGTCGCCGTTTCT+CGG | 0.373889 | 5.4:+29842110 | MS.gene032872:intron |
AATTATTCAGCTCATAGTTC+AGG | 0.376079 | 5.4:+29842156 | MS.gene032872:CDS |
TGAAACTTTGCAGGAAGATA+TGG | 0.388926 | 5.4:+29842398 | MS.gene032872:CDS |
AATACTGGCGTGATTTATAA+TGG | 0.399656 | 5.4:+29842315 | MS.gene032872:CDS |
GAAAACGTGGATAAAGTTAC+TGG | 0.399696 | 5.4:+29842189 | MS.gene032872:CDS |
AGTGGAGATCTAACACTATC+TGG | 0.402390 | 5.4:-29842630 | None:intergenic |
AGCAGCCGATGAAACTTTGC+AGG | 0.410172 | 5.4:+29842389 | MS.gene032872:CDS |
CTGGTAACTTGTGTAGTAGT+AGG | 0.423638 | 5.4:+29842799 | MS.gene032872:CDS |
AAGAAGATTGTAGAGGATAC+TGG | 0.442437 | 5.4:+29842780 | MS.gene032872:CDS |
GAAGGTAATGATAACATTGC+GGG | 0.444163 | 5.4:+29842426 | MS.gene032872:CDS |
CAGGTTGACGTGATTTCTAA+TGG | 0.445576 | 5.4:+29842525 | MS.gene032872:CDS |
AGCTTGTCTCAACCAAATAC+TGG | 0.447118 | 5.4:+29842300 | MS.gene032872:CDS |
ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 5.4:-29841127 | None:intergenic |
TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 5.4:-29841126 | None:intergenic |
AGCCTGGTAGATCTTCTAAC+AGG | 0.463228 | 5.4:-29842903 | None:intergenic |
GTATGTCGCCGTTTCTCGGT+TGG | 0.465222 | 5.4:+29842114 | MS.gene032872:CDS |
GTTGTCTCAACATGAAGATA+TGG | 0.473214 | 5.4:+29842455 | MS.gene032872:CDS |
TTTCTTATAATTTAGTAGCC+TGG | 0.480534 | 5.4:-29842919 | None:intergenic |
TCAACATGAAGATATGGATC+TGG | 0.495560 | 5.4:+29842461 | MS.gene032872:CDS |
ATCTAACACTATCTGGCTCA+TGG | 0.508763 | 5.4:-29842623 | None:intergenic |
GTGGAAATCCAACCGAGAAA+CGG | 0.509162 | 5.4:-29842122 | None:intergenic |
ATCTTCCTGCAAAGTTTCAT+CGG | 0.511056 | 5.4:-29842394 | None:intergenic |
TGGTAACTTGTGTAGTAGTA+GGG | 0.548652 | 5.4:+29842800 | MS.gene032872:CDS |
TGGTATGTTTCTTATCCTTG+CGG | 0.554331 | 5.4:-29842692 | None:intergenic |
TCTAACACTATCTGGCTCAT+GGG | 0.568783 | 5.4:-29842622 | None:intergenic |
GGCATCACTGTAATGTTCCA+CGG | 0.577101 | 5.4:+29841150 | MS.gene032872:CDS |
AACAGTTGACGAGACTTCAC+AGG | 0.579898 | 5.4:+29842245 | MS.gene032872:CDS |
CTCCTGTTAGAAGATCTACC+AGG | 0.582686 | 5.4:+29842901 | MS.gene032872:CDS |
CGAATTATCAAGTGACCGCA+AGG | 0.593011 | 5.4:+29842677 | MS.gene032872:CDS |
ACACTATCTGGCTCATGGGT+AGG | 0.595465 | 5.4:-29842618 | None:intergenic |
CAGGAAGATATGGAAGCTGA+AGG | 0.608477 | 5.4:+29842408 | MS.gene032872:CDS |
CATGAAGATATGGATCTGGA+AGG | 0.628269 | 5.4:+29842465 | MS.gene032872:CDS |
AGGAAATGAATGTGAAAACG+TGG | 0.652661 | 5.4:+29842176 | MS.gene032872:CDS |
GAGACTTCACAGGAAGCTGA+AGG | 0.656001 | 5.4:+29842255 | MS.gene032872:CDS |
AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 5.4:+29841129 | MS.gene032872:CDS |
TGAAGGTAATGATAACATTG+CGG | 0.664274 | 5.4:+29842425 | MS.gene032872:CDS |
ACGTACCAAGAAGATTGTAG+AGG | 0.670592 | 5.4:+29842740 | MS.gene032872:CDS |
TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5.4:+29842710 | MS.gene032872:CDS |
TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5.4:+29842773 | MS.gene032872:CDS |
TTAGAAATCACGTCAACCTG+TGG | 0.688603 | 5.4:-29842522 | None:intergenic |
GTGAGGCGTTAATCAAACCG+TGG | 0.738580 | 5.4:-29841167 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATTTTTAGAATTAGTTT+TGG | + | chr5.4:29841590-29841609 | MS.gene032872:intron | 10.0% |
!! | AAAAAAGTTAGCAAAAATAT+AGG | - | chr5.4:29841882-29841901 | None:intergenic | 15.0% |
!!! | TTAAAATCAAATTTTGTCAA+AGG | - | chr5.4:29841340-29841359 | None:intergenic | 15.0% |
!! | TTGAGAGTAAAAATCAAATT+TGG | + | chr5.4:29841436-29841455 | MS.gene032872:intron | 20.0% |
!!! | AAGAATATTTTAAACATGTC+TGG | + | chr5.4:29841524-29841543 | MS.gene032872:intron | 20.0% |
!!! | ATCAATCAATCACTTTTATT+TGG | + | chr5.4:29841843-29841862 | MS.gene032872:intron | 20.0% |
!!! | TAACTTTTTTATGTGAAACT+AGG | + | chr5.4:29841892-29841911 | MS.gene032872:intron | 20.0% |
!!! | TGTCAAAAAGTATAGATTTT+GGG | - | chr5.4:29841968-29841987 | None:intergenic | 20.0% |
!!! | TTGTCAAAAAGTATAGATTT+TGG | - | chr5.4:29841969-29841988 | None:intergenic | 20.0% |
! | AAAATACGCATAATCTTCAA+TGG | + | chr5.4:29842010-29842029 | MS.gene032872:intron | 25.0% |
! | AAATTAAATGCGTCAATAAC+AGG | - | chr5.4:29842066-29842085 | None:intergenic | 25.0% |
! | AATATTCAATGTCTTTCAAC+AGG | + | chr5.4:29842092-29842111 | MS.gene032872:intron | 25.0% |
! | GTGATTTATAATGGTGAAAA+TGG | + | chr5.4:29842324-29842343 | MS.gene032872:CDS | 25.0% |
! | TGATTGATAAACCTCAATTA+TGG | - | chr5.4:29841831-29841850 | None:intergenic | 25.0% |
! | TTGAATATAACTAGTGTGTT+TGG | + | chr5.4:29841301-29841320 | MS.gene032872:intron | 25.0% |
! | TTGTGATAAAACAGTAAATC+TGG | - | chr5.4:29841712-29841731 | None:intergenic | 25.0% |
! | TTTCTTATAATTTAGTAGCC+TGG | - | chr5.4:29842922-29842941 | None:intergenic | 25.0% |
!! | GAATAATTTTTCCAATTGTG+TGG | - | chr5.4:29842144-29842163 | None:intergenic | 25.0% |
!!! | TATTGACGCATTTAATTTTC+TGG | + | chr5.4:29842068-29842087 | MS.gene032872:intron | 25.0% |
!!! | TTTAGATTCACTTTTAAGAG+AGG | - | chr5.4:29841562-29841581 | None:intergenic | 25.0% |
AATACTGGCGTGATTTATAA+TGG | + | chr5.4:29842315-29842334 | MS.gene032872:CDS | 30.0% | |
AATTATTCAGCTCATAGTTC+AGG | + | chr5.4:29842156-29842175 | MS.gene032872:CDS | 30.0% | |
GTGATTTCTAATGGTGAAAA+TGG | + | chr5.4:29842534-29842553 | MS.gene032872:CDS | 30.0% | |
TGAAGGTAATGATAACATTG+CGG | + | chr5.4:29842425-29842444 | MS.gene032872:CDS | 30.0% | |
TTATAAATCACGCCAGTATT+TGG | - | chr5.4:29842315-29842334 | None:intergenic | 30.0% | |
TTCAATTTCTTTGCGTAAAG+TGG | - | chr5.4:29842651-29842670 | None:intergenic | 30.0% | |
! | GTATGTTTGAAGCTATTACT+TGG | - | chr5.4:29841794-29841813 | None:intergenic | 30.0% |
! | TCAAAATGGTTTTTCTTCTG+AGG | + | chr5.4:29841197-29841216 | MS.gene032872:CDS | 30.0% |
!! | CTTCGAGTTAGAATTCATTT+TGG | + | chr5.4:29841481-29841500 | MS.gene032872:intron | 30.0% |
AAGAAGATTGTAGAGGATAC+TGG | + | chr5.4:29842780-29842799 | MS.gene032872:CDS | 35.0% | |
AAGAGGAGTGAGAAAGAAAA+AGG | - | chr5.4:29841231-29841250 | None:intergenic | 35.0% | |
AAGTCACACGATGCTTAAAA+AGG | + | chr5.4:29842848-29842867 | MS.gene032872:CDS | 35.0% | |
AATGTTGTAGAGACTCAAGA+TGG | + | chr5.4:29841129-29841148 | MS.gene032872:CDS | 35.0% | |
ACACGATGCTTAAAAAGGAT+GGG | + | chr5.4:29842853-29842872 | MS.gene032872:CDS | 35.0% | |
AGAGGAGTGAGAAAGAAAAA+GGG | - | chr5.4:29841230-29841249 | None:intergenic | 35.0% | |
AGGAAATGAATGTGAAAACG+TGG | + | chr5.4:29842176-29842195 | MS.gene032872:CDS | 35.0% | |
ATCCTCTACAATCTTCTTCT+TGG | - | chr5.4:29842715-29842734 | None:intergenic | 35.0% | |
ATCTTCCTGCAAAGTTTCAT+CGG | - | chr5.4:29842397-29842416 | None:intergenic | 35.0% | |
ATCTTGAGTCTCTACAACAT+TGG | - | chr5.4:29841130-29841149 | None:intergenic | 35.0% | |
CTTATCCTCTACAATCTTCT+TGG | - | chr5.4:29842718-29842737 | None:intergenic | 35.0% | |
GAAAACGTGGATAAAGTTAC+TGG | + | chr5.4:29842189-29842208 | MS.gene032872:CDS | 35.0% | |
GAAGGTAATGATAACATTGC+GGG | + | chr5.4:29842426-29842445 | MS.gene032872:CDS | 35.0% | |
GTTGTCTCAACATGAAGATA+TGG | + | chr5.4:29842455-29842474 | MS.gene032872:CDS | 35.0% | |
TACCAAGAAGAAGATTGTAG+AGG | + | chr5.4:29842710-29842729 | MS.gene032872:CDS | 35.0% | |
TCAACATGAAGATATGGATC+TGG | + | chr5.4:29842461-29842480 | MS.gene032872:CDS | 35.0% | |
TCTTGAGTCTCTACAACATT+GGG | - | chr5.4:29841129-29841148 | None:intergenic | 35.0% | |
TGAAACTTTGCAGGAAGATA+TGG | + | chr5.4:29842398-29842417 | MS.gene032872:CDS | 35.0% | |
TGGTATGTTTCTTATCCTTG+CGG | - | chr5.4:29842695-29842714 | None:intergenic | 35.0% | |
! | AACATGTCTGGAATCACTTT+AGG | + | chr5.4:29841536-29841555 | MS.gene032872:intron | 35.0% |
! | CGAGTTAGAATTCATTTTGG+AGG | + | chr5.4:29841484-29841503 | MS.gene032872:intron | 35.0% |
! | TGGTAACTTGTGTAGTAGTA+GGG | + | chr5.4:29842800-29842819 | MS.gene032872:CDS | 35.0% |
!! | AAATGGTTTTTCTTCTGAGG+TGG | + | chr5.4:29841200-29841219 | MS.gene032872:intron | 35.0% |
!!! | AATGGTTTTTCTTCTGAGGT+GGG | + | chr5.4:29841201-29841220 | MS.gene032872:intron | 35.0% |
!!! | TCTCGTCAACTGTTTTTTTG+TGG | - | chr5.4:29842239-29842258 | None:intergenic | 35.0% |
!!! | TTTTGATTTGTCTCAACCAC+AGG | + | chr5.4:29842506-29842525 | MS.gene032872:CDS | 35.0% |
AACCTCAATTATGGTGTCTG+TGG | - | chr5.4:29841822-29841841 | None:intergenic | 40.0% | |
AAGCTATTACTTGGAGCAAC+AGG | - | chr5.4:29841785-29841804 | None:intergenic | 40.0% | |
AATCAAACGAGCCTAGAGAA+GGG | - | chr5.4:29841256-29841275 | None:intergenic | 40.0% | |
ACGTACCAAGAAGATTGTAG+AGG | + | chr5.4:29842740-29842759 | MS.gene032872:CDS | 40.0% | |
AGCTTGTCTCAACCAAATAC+TGG | + | chr5.4:29842300-29842319 | MS.gene032872:CDS | 40.0% | |
AGTGGAGATCTAACACTATC+TGG | - | chr5.4:29842633-29842652 | None:intergenic | 40.0% | |
CACACGATGCTTAAAAAGGA+TGG | + | chr5.4:29842852-29842871 | MS.gene032872:CDS | 40.0% | |
CATGAAGATATGGATCTGGA+AGG | + | chr5.4:29842465-29842484 | MS.gene032872:CDS | 40.0% | |
CGTGTTTGCTTCATGTTCAA+GGG | + | chr5.4:29841734-29841753 | MS.gene032872:intron | 40.0% | |
TTAGAAATCACGTCAACCTG+TGG | - | chr5.4:29842525-29842544 | None:intergenic | 40.0% | |
TTCCACAGACACCATAATTG+AGG | + | chr5.4:29841817-29841836 | MS.gene032872:intron | 40.0% | |
! | ATCTAACACTATCTGGCTCA+TGG | - | chr5.4:29842626-29842645 | None:intergenic | 40.0% |
! | CAGGTTGACGTGATTTCTAA+TGG | + | chr5.4:29842525-29842544 | MS.gene032872:CDS | 40.0% |
! | CATGCATGAGATTTAGAGTC+TGG | + | chr5.4:29841923-29841942 | MS.gene032872:intron | 40.0% |
! | CTGGTAACTTGTGTAGTAGT+AGG | + | chr5.4:29842799-29842818 | MS.gene032872:CDS | 40.0% |
! | TCTAACACTATCTGGCTCAT+GGG | - | chr5.4:29842625-29842644 | None:intergenic | 40.0% |
!! | AAGCATCGTGTGACTTTTCT+TGG | - | chr5.4:29842844-29842863 | None:intergenic | 40.0% |
!!! | ACCATTTTGAGATGTACGTG+AGG | - | chr5.4:29841187-29841206 | None:intergenic | 40.0% |
!!! | TTCATCGGCTGCTTTTTTGA+GGG | - | chr5.4:29842382-29842401 | None:intergenic | 40.0% |
!!! | TTTCATCGGCTGCTTTTTTG+AGG | - | chr5.4:29842383-29842402 | None:intergenic | 40.0% |
AACAGTTGACGAGACTTCAC+AGG | + | chr5.4:29842245-29842264 | MS.gene032872:CDS | 45.0% | |
AGCCTGGTAGATCTTCTAAC+AGG | - | chr5.4:29842906-29842925 | None:intergenic | 45.0% | |
CAATCAAACGAGCCTAGAGA+AGG | - | chr5.4:29841257-29841276 | None:intergenic | 45.0% | |
CAGGAAGATATGGAAGCTGA+AGG | + | chr5.4:29842408-29842427 | MS.gene032872:CDS | 45.0% | |
CGAATTATCAAGTGACCGCA+AGG | + | chr5.4:29842677-29842696 | MS.gene032872:CDS | 45.0% | |
CGGTTGGATTTCCACACAAT+TGG | + | chr5.4:29842130-29842149 | MS.gene032872:CDS | 45.0% | |
CTCCTGTTAGAAGATCTACC+AGG | + | chr5.4:29842901-29842920 | MS.gene032872:CDS | 45.0% | |
GCCTCACGTACATCTCAAAA+TGG | + | chr5.4:29841183-29841202 | MS.gene032872:CDS | 45.0% | |
GCGTGTTTGCTTCATGTTCA+AGG | + | chr5.4:29841733-29841752 | MS.gene032872:intron | 45.0% | |
GGCATCACTGTAATGTTCCA+CGG | + | chr5.4:29841150-29841169 | MS.gene032872:CDS | 45.0% | |
GTGGAAATCCAACCGAGAAA+CGG | - | chr5.4:29842125-29842144 | None:intergenic | 45.0% | |
! | GGTTCAAGTTCAATCCACTG+TGG | - | chr5.4:29841764-29841783 | None:intergenic | 45.0% |
! | GTCTGGCAATTTTGTCTGAC+AGG | + | chr5.4:29841940-29841959 | MS.gene032872:intron | 45.0% |
AACAGGCGCAATCACACACA+AGG | - | chr5.4:29842049-29842068 | None:intergenic | 50.0% | |
ACAGGCGCAATCACACACAA+GGG | - | chr5.4:29842048-29842067 | None:intergenic | 50.0% | |
ACAGGTATGTCGCCGTTTCT+CGG | + | chr5.4:29842110-29842129 | MS.gene032872:intron | 50.0% | |
ACTCCTCTTGACCCTTCTCT+AGG | + | chr5.4:29841242-29841261 | MS.gene032872:intron | 50.0% | |
AGCAGCCGATGAAACTTTGC+AGG | + | chr5.4:29842389-29842408 | MS.gene032872:CDS | 50.0% | |
GAGACTTCACAGGAAGCTGA+AGG | + | chr5.4:29842255-29842274 | MS.gene032872:CDS | 50.0% | |
TGTTCAAGGGTCATCCACAG+TGG | + | chr5.4:29841747-29841766 | MS.gene032872:intron | 50.0% | |
! | ACACTATCTGGCTCATGGGT+AGG | - | chr5.4:29842621-29842640 | None:intergenic | 50.0% |
! | GTGAGGCGTTAATCAAACCG+TGG | - | chr5.4:29841170-29841189 | None:intergenic | 50.0% |
GAGCCTAGAGAAGGGTCAAG+AGG | - | chr5.4:29841248-29841267 | None:intergenic | 55.0% | |
GTATGTCGCCGTTTCTCGGT+TGG | + | chr5.4:29842114-29842133 | MS.gene032872:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 29841090 | 29842944 | 29841090 | ID=MS.gene032872 |
chr5.4 | mRNA | 29841090 | 29842944 | 29841090 | ID=MS.gene032872.t1;Parent=MS.gene032872 |
chr5.4 | exon | 29841090 | 29841218 | 29841090 | ID=MS.gene032872.t1.exon1;Parent=MS.gene032872.t1 |
chr5.4 | CDS | 29841090 | 29841218 | 29841090 | ID=cds.MS.gene032872.t1;Parent=MS.gene032872.t1 |
chr5.4 | exon | 29842114 | 29842944 | 29842114 | ID=MS.gene032872.t1.exon2;Parent=MS.gene032872.t1 |
chr5.4 | CDS | 29842114 | 29842944 | 29842114 | ID=cds.MS.gene032872.t1;Parent=MS.gene032872.t1 |
Gene Sequence |
Protein sequence |