Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032907.t1 | RHN55381.1 | 97.6 | 459 | 9 | 1 | 1 | 459 | 1 | 457 | 1.00E-266 | 928.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032907.t1 | Q9FMS5 | 49.6 | 474 | 211 | 11 | 1 | 459 | 212 | 672 | 3.0e-121 | 436.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032907.t1 | G7KF85 | 97.6 | 459 | 9 | 1 | 1 | 459 | 210 | 666 | 7.5e-267 | 928.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032907.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032907.t1 | MTR_5g040700 | 97.603 | 459 | 9 | 1 | 1 | 459 | 210 | 666 | 0.0 | 924 |
| MS.gene032907.t1 | MTR_5g077750 | 32.877 | 511 | 254 | 14 | 1 | 448 | 193 | 677 | 8.55e-72 | 240 |
| MS.gene032907.t1 | MTR_4g035550 | 30.508 | 472 | 269 | 14 | 1 | 452 | 237 | 669 | 5.76e-54 | 192 |
| MS.gene032907.t1 | MTR_1g076990 | 29.032 | 465 | 278 | 15 | 1 | 449 | 70 | 498 | 1.96e-49 | 177 |
| MS.gene032907.t1 | MTR_1g076990 | 28.970 | 466 | 279 | 15 | 1 | 450 | 98 | 527 | 2.79e-49 | 177 |
| MS.gene032907.t1 | MTR_1g076990 | 28.970 | 466 | 279 | 15 | 1 | 450 | 240 | 669 | 1.74e-48 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032907.t1 | AT5G22260 | 49.790 | 476 | 207 | 12 | 1 | 459 | 212 | 672 | 8.72e-148 | 437 |
| MS.gene032907.t1 | AT1G66170 | 30.909 | 495 | 271 | 13 | 1 | 453 | 193 | 658 | 3.82e-58 | 203 |
| MS.gene032907.t1 | AT1G33420 | 29.079 | 478 | 264 | 15 | 1 | 459 | 132 | 553 | 6.70e-49 | 176 |
| MS.gene032907.t1 | AT1G33420 | 29.122 | 467 | 259 | 14 | 1 | 448 | 237 | 650 | 4.19e-48 | 176 |
| MS.gene032907.t1 | AT2G01810 | 26.901 | 513 | 281 | 18 | 1 | 448 | 199 | 682 | 1.63e-40 | 154 |
| MS.gene032907.t1 | AT2G07714 | 41.414 | 99 | 51 | 2 | 1 | 94 | 27 | 123 | 1.11e-15 | 75.9 |
Find 95 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTCTTATTGCTTCTA+TGG | 0.182195 | 5.3:+28580909 | None:intergenic |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5.3:+28579833 | None:intergenic |
| AGAAATTCTGACCCTATAAT+TGG | 0.198934 | 5.3:+28580298 | None:intergenic |
| TCAAATAATACTCATGATTA+TGG | 0.227620 | 5.3:+28580125 | None:intergenic |
| ATTGACACAAAACCAATTAT+AGG | 0.232727 | 5.3:-28580310 | MS.gene032907:CDS |
| TGGTACCTTTGGAAGATTAA+TGG | 0.241935 | 5.3:+28580838 | None:intergenic |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.290085 | 5.3:-28580986 | MS.gene032907:CDS |
| ATCACTCTCTTGTCACCCTT+GGG | 0.305190 | 5.3:-28580804 | MS.gene032907:CDS |
| CAGAAAGTGTTTGGTACCTT+TGG | 0.317798 | 5.3:+28580827 | None:intergenic |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5.3:+28579722 | None:intergenic |
| GATTAATGGGATTTCATGAT+TGG | 0.324820 | 5.3:+28580852 | None:intergenic |
| GGTACCTTTGGAAGATTAAT+GGG | 0.334887 | 5.3:+28580839 | None:intergenic |
| AAATTTGGTCGAGGATGTTT+TGG | 0.336081 | 5.3:-28580958 | MS.gene032907:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5.3:+28580428 | None:intergenic |
| TTGACACAAAACCAATTATA+GGG | 0.352156 | 5.3:-28580309 | MS.gene032907:CDS |
| GTTCCTTTGCAAGTTGAGTT+AGG | 0.365195 | 5.3:-28580208 | MS.gene032907:CDS |
| AAATATCTTATCAAAGACTA+TGG | 0.371766 | 5.3:-28580235 | MS.gene032907:CDS |
| ATTGTCGTTGGTCTCCTAAA+AGG | 0.374811 | 5.3:-28580690 | MS.gene032907:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5.3:-28579965 | MS.gene032907:CDS |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5.3:+28579971 | None:intergenic |
| AGGTTGGCATGGTGGTGAAA+TGG | 0.392045 | 5.3:-28579891 | MS.gene032907:CDS |
| TATCGGAGACACTGGTTTGT+TGG | 0.392257 | 5.3:-28580572 | MS.gene032907:CDS |
| GGTTGGCATGGTGGTGAAAT+GGG | 0.394662 | 5.3:-28579890 | MS.gene032907:CDS |
| TAGTAGTAGTAATAAAGTTA+AGG | 0.409211 | 5.3:-28580398 | MS.gene032907:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.414717 | 5.3:-28580805 | MS.gene032907:CDS |
| TCATATAGCTATGGCAAAGA+AGG | 0.423732 | 5.3:+28579656 | None:intergenic |
| ACGACAATTTGTTTCGACTA+AGG | 0.424799 | 5.3:+28580705 | None:intergenic |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.429683 | 5.3:-28580987 | MS.gene032907:CDS |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5.3:+28580082 | None:intergenic |
| CCACGTCGTTGGAAACTACT+TGG | 0.439905 | 5.3:-28580524 | MS.gene032907:CDS |
| TGGTGAAATGGGAATCAATA+TGG | 0.450711 | 5.3:-28579879 | MS.gene032907:CDS |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5.3:-28580273 | MS.gene032907:CDS |
| GATGCCGCACGCGCTTATAT+CGG | 0.463998 | 5.3:-28580589 | MS.gene032907:CDS |
| GGAACCAATGCATGTTTCAC+GGG | 0.465445 | 5.3:+28580741 | None:intergenic |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5.3:+28580818 | None:intergenic |
| GGAATTGTGGAGTGCATTTG+TGG | 0.466448 | 5.3:-28579824 | MS.gene032907:CDS |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5.3:-28580442 | MS.gene032907:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5.3:-28580994 | MS.gene032907:CDS |
| GGTTCGTCGAAGCTTGAATC+CGG | 0.492847 | 5.3:-28580503 | MS.gene032907:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5.3:+28580091 | None:intergenic |
| GACTAAGGCGCTTGTGCTGA+AGG | 0.502475 | 5.3:+28580720 | None:intergenic |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5.3:-28579964 | MS.gene032907:CDS |
| ATGTGAAAGGGATCCAAAGA+AGG | 0.504134 | 5.3:-28579846 | MS.gene032907:CDS |
| GTCTCCTAAAAGGATCGAAA+TGG | 0.507579 | 5.3:-28580680 | MS.gene032907:CDS |
| GATCCTAACTCAACTTGCAA+AGG | 0.523589 | 5.3:+28580205 | None:intergenic |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5.3:-28579954 | MS.gene032907:CDS |
| AGGACAAGTACAAGATTACA+AGG | 0.526429 | 5.3:-28580378 | MS.gene032907:CDS |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5.3:-28580441 | MS.gene032907:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.535716 | 5.3:-28579907 | MS.gene032907:CDS |
| GGTTGAGCAAATATGTGAAA+GGG | 0.538616 | 5.3:-28579858 | MS.gene032907:CDS |
| AGGAACCAATGCATGTTTCA+CGG | 0.539644 | 5.3:+28580740 | None:intergenic |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5.3:-28580281 | MS.gene032907:CDS |
| GACAAGTACAAGATTACAAG+GGG | 0.544839 | 5.3:-28580376 | MS.gene032907:CDS |
| TTTGGGATGATTGAAGTGGG+TGG | 0.553049 | 5.3:-28579929 | MS.gene032907:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5.3:-28579795 | MS.gene032907:CDS |
| TGGTTGAGCAAATATGTGAA+AGG | 0.555851 | 5.3:-28579859 | MS.gene032907:CDS |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.559896 | 5.3:-28580985 | MS.gene032907:CDS |
| TCACTAGGTAACCACGTCGT+TGG | 0.562205 | 5.3:-28580535 | MS.gene032907:CDS |
| CATATAGCTATGGCAAAGAA+GGG | 0.567677 | 5.3:+28579657 | None:intergenic |
| CTTCCCCGTGAAACATGCAT+TGG | 0.568498 | 5.3:-28580745 | MS.gene032907:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.570004 | 5.3:-28579911 | MS.gene032907:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5.3:-28579837 | MS.gene032907:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5.3:-28580039 | MS.gene032907:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5.3:-28580437 | MS.gene032907:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5.3:+28580433 | None:intergenic |
| GAATCCGGTTACAAAAGTGT+TGG | 0.591697 | 5.3:-28580488 | MS.gene032907:CDS |
| CGCGCTTATATCGGAGACAC+TGG | 0.594457 | 5.3:-28580580 | MS.gene032907:CDS |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5.3:+28580085 | None:intergenic |
| AAGGATCGAAATGGCAACAC+GGG | 0.601348 | 5.3:-28580671 | MS.gene032907:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.602822 | 5.3:-28579845 | MS.gene032907:CDS |
| TAGTCGAAACAAATTGTCGT+TGG | 0.607261 | 5.3:-28580702 | MS.gene032907:CDS |
| TCACTCTCTTGTCACCCTTG+GGG | 0.608508 | 5.3:-28580803 | MS.gene032907:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5.3:-28581021 | MS.gene032907:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5.3:+28580265 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5.3:+28580434 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+TGG | 0.619314 | 5.3:-28579902 | MS.gene032907:CDS |
| AAATCCCATTAATCTTCCAA+AGG | 0.619758 | 5.3:-28580843 | MS.gene032907:CDS |
| TGGTGTGTGAGTAAGTATAG+TGG | 0.621011 | 5.3:+28580886 | None:intergenic |
| TGTAGTGAAATAAGTCCCCA+AGG | 0.621432 | 5.3:+28580788 | None:intergenic |
| GGCAACACGGGTCATTGTCG+AGG | 0.625213 | 5.3:-28580659 | MS.gene032907:CDS |
| AGCCATGGTTTGGTCGTTGG+GGG | 0.632030 | 5.3:-28580984 | MS.gene032907:CDS |
| TGTGGAACTAAAGAAGATGA+TGG | 0.634151 | 5.3:-28579806 | MS.gene032907:CDS |
| AAAGGATCGAAATGGCAACA+CGG | 0.636312 | 5.3:-28580672 | MS.gene032907:CDS |
| TCATGAGTATTATTTGAACA+AGG | 0.637154 | 5.3:-28580119 | MS.gene032907:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5.3:-28580999 | MS.gene032907:CDS |
| ACATGTTAGAGCTCAAGTCA+CGG | 0.647934 | 5.3:-28580768 | MS.gene032907:CDS |
| GTCTCCGATATAAGCGCGTG+CGG | 0.649774 | 5.3:+28580585 | None:intergenic |
| CATGATTGGAATTTGCAATG+TGG | 0.652672 | 5.3:+28580866 | None:intergenic |
| CCAAGTAGTTTCCAACGACG+TGG | 0.664980 | 5.3:+28580524 | None:intergenic |
| GGACAAGTACAAGATTACAA+GGG | 0.673997 | 5.3:-28580377 | MS.gene032907:CDS |
| GAACCAATGCATGTTTCACG+GGG | 0.696558 | 5.3:+28580742 | None:intergenic |
| GTAGTGAAATAAGTCCCCAA+GGG | 0.700987 | 5.3:+28580789 | None:intergenic |
| TCTTATCAAAGACTATGGAG+AGG | 0.706196 | 5.3:-28580230 | MS.gene032907:CDS |
| GTACTTGAAGGTTGGCATGG+TGG | 0.707747 | 5.3:-28579899 | MS.gene032907:CDS |
| ACAAGTACAAGATTACAAGG+GGG | 0.810721 | 5.3:-28580375 | MS.gene032907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTACAATTTTGTTA+AGG | - | chr5.3:28580520-28580539 | MS.gene032907:CDS | 15.0% |
| !! | AAATATCTTATCAAAGACTA+TGG | - | chr5.3:28580450-28580469 | MS.gene032907:CDS | 20.0% |
| !! | TAGTAGTAGTAATAAAGTTA+AGG | - | chr5.3:28580287-28580306 | MS.gene032907:CDS | 20.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5.3:28580563-28580582 | None:intergenic | 20.0% |
| !!! | TTAAGGAATTTTAACAATGT+AGG | - | chr5.3:28580537-28580556 | MS.gene032907:CDS | 20.0% |
| ! | ATTGACACAAAACCAATTAT+AGG | - | chr5.3:28580375-28580394 | MS.gene032907:CDS | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5.3:28580052-28580071 | MS.gene032907:CDS | 25.0% |
| ! | TCATGAGTATTATTTGAACA+AGG | - | chr5.3:28580566-28580585 | MS.gene032907:CDS | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5.3:28580606-28580625 | None:intergenic | 25.0% |
| ! | TTGACACAAAACCAATTATA+GGG | - | chr5.3:28580376-28580395 | MS.gene032907:CDS | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5.3:28580656-28580675 | MS.gene032907:CDS | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5.3:28580982-28581001 | MS.gene032907:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5.3:28580984-28581003 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5.3:28580655-28580674 | MS.gene032907:CDS | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5.3:28580052-28580071 | None:intergenic | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5.3:28580669-28580688 | MS.gene032907:CDS | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5.3:28580668-28580687 | MS.gene032907:CDS | 25.0% |
| AAATCCCATTAATCTTCCAA+AGG | - | chr5.3:28579842-28579861 | MS.gene032907:CDS | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5.3:28580603-28580622 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5.3:28580646-28580665 | MS.gene032907:CDS | 30.0% | |
| AGAAATTCTGACCCTATAAT+TGG | + | chr5.3:28580390-28580409 | None:intergenic | 30.0% | |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5.3:28580404-28580423 | MS.gene032907:CDS | 30.0% | |
| GATTAATGGGATTTCATGAT+TGG | + | chr5.3:28579836-28579855 | None:intergenic | 30.0% | |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5.3:28580721-28580740 | MS.gene032907:CDS | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+TGG | - | chr5.3:28580738-28580757 | MS.gene032907:CDS | 30.0% |
| ! | AAGGGAATGAAATGGTTTTT+GGG | - | chr5.3:28580739-28580758 | MS.gene032907:CDS | 30.0% |
| ! | TTATTGCTTCTATGGCTTTT+TGG | + | chr5.3:28579771-28579790 | None:intergenic | 30.0% |
| !! | ATTTTAGGGAAATCTATTGG+GGG | - | chr5.3:28580670-28580689 | MS.gene032907:CDS | 30.0% |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5.3:28580667-28580686 | MS.gene032907:CDS | 30.0% |
| !!! | GATTTTGTTTTGAAGTCACT+AGG | - | chr5.3:28580135-28580154 | MS.gene032907:CDS | 30.0% |
| ACAAGTACAAGATTACAAGG+GGG | - | chr5.3:28580310-28580329 | MS.gene032907:CDS | 35.0% | |
| AGGACAAGTACAAGATTACA+AGG | - | chr5.3:28580307-28580326 | MS.gene032907:CDS | 35.0% | |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5.3:28580597-28580616 | None:intergenic | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5.3:28579664-28579683 | MS.gene032907:CDS | 35.0% | |
| CATGATTGGAATTTGCAATG+TGG | + | chr5.3:28579822-28579841 | None:intergenic | 35.0% | |
| CATGCTTCTTATTGCTTCTA+TGG | + | chr5.3:28579779-28579798 | None:intergenic | 35.0% | |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5.3:28580778-28580797 | MS.gene032907:CDS | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5.3:28580731-28580750 | MS.gene032907:CDS | 35.0% | |
| GACAAGTACAAGATTACAAG+GGG | - | chr5.3:28580309-28580328 | MS.gene032907:CDS | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5.3:28580717-28580736 | None:intergenic | 35.0% | |
| GGACAAGTACAAGATTACAA+GGG | - | chr5.3:28580308-28580327 | MS.gene032907:CDS | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5.3:28580720-28580739 | MS.gene032907:CDS | 35.0% | |
| GGTTGAGCAAATATGTGAAA+GGG | - | chr5.3:28580827-28580846 | MS.gene032907:CDS | 35.0% | |
| TAGTCGAAACAAATTGTCGT+TGG | - | chr5.3:28579983-28580002 | MS.gene032907:CDS | 35.0% | |
| TCTTATCAAAGACTATGGAG+AGG | - | chr5.3:28580455-28580474 | MS.gene032907:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5.3:28580966-28580985 | None:intergenic | 35.0% | |
| TGGTGAAATGGGAATCAATA+TGG | - | chr5.3:28580806-28580825 | MS.gene032907:CDS | 35.0% | |
| TGGTTGAGCAAATATGTGAA+AGG | - | chr5.3:28580826-28580845 | MS.gene032907:CDS | 35.0% | |
| TGTGGAACTAAAGAAGATGA+TGG | - | chr5.3:28580879-28580898 | MS.gene032907:CDS | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5.3:28579727-28579746 | MS.gene032907:CDS | 35.0% |
| ! | ACGACAATTTGTTTCGACTA+AGG | + | chr5.3:28579983-28580002 | None:intergenic | 35.0% |
| ! | GGTACCTTTGGAAGATTAAT+GGG | + | chr5.3:28579849-28579868 | None:intergenic | 35.0% |
| ! | TACTCCAACACTTTTGTAAC+CGG | + | chr5.3:28580204-28580223 | None:intergenic | 35.0% |
| ! | TGGTACCTTTGGAAGATTAA+TGG | + | chr5.3:28579850-28579869 | None:intergenic | 35.0% |
| !!! | GTTTTTGGGATGATTGAAGT+GGG | - | chr5.3:28580753-28580772 | MS.gene032907:CDS | 35.0% |
| AAAGGATCGAAATGGCAACA+CGG | - | chr5.3:28580013-28580032 | MS.gene032907:CDS | 40.0% | |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5.3:28580243-28580262 | MS.gene032907:CDS | 40.0% | |
| ACATGTTAGAGCTCAAGTCA+CGG | - | chr5.3:28579917-28579936 | MS.gene032907:CDS | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5.3:28580423-28580442 | None:intergenic | 40.0% | |
| AGGAACCAATGCATGTTTCA+CGG | + | chr5.3:28579948-28579967 | None:intergenic | 40.0% | |
| ATGTGAAAGGGATCCAAAGA+AGG | - | chr5.3:28580839-28580858 | MS.gene032907:CDS | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5.3:28580244-28580263 | MS.gene032907:CDS | 40.0% | |
| GATCCTAACTCAACTTGCAA+AGG | + | chr5.3:28580483-28580502 | None:intergenic | 40.0% | |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5.3:28580774-28580793 | MS.gene032907:CDS | 40.0% | |
| GTAGTGAAATAAGTCCCCAA+GGG | + | chr5.3:28579899-28579918 | None:intergenic | 40.0% | |
| GTCTCCTAAAAGGATCGAAA+TGG | - | chr5.3:28580005-28580024 | MS.gene032907:CDS | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5.3:28580260-28580279 | None:intergenic | 40.0% | |
| TGGTGTGTGAGTAAGTATAG+TGG | + | chr5.3:28579802-28579821 | None:intergenic | 40.0% | |
| TGTAGTGAAATAAGTCCCCA+AGG | + | chr5.3:28579900-28579919 | None:intergenic | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5.3:28580840-28580859 | MS.gene032907:CDS | 40.0% | |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5.3:28580890-28580909 | MS.gene032907:CDS | 40.0% |
| ! | ATTGTCGTTGGTCTCCTAAA+AGG | - | chr5.3:28579995-28580014 | MS.gene032907:CDS | 40.0% |
| ! | GAATCCGGTTACAAAAGTGT+TGG | - | chr5.3:28580197-28580216 | MS.gene032907:CDS | 40.0% |
| ! | GTTCCTTTGCAAGTTGAGTT+AGG | - | chr5.3:28580477-28580496 | MS.gene032907:CDS | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5.3:28580700-28580719 | MS.gene032907:CDS | 40.0% |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5.3:28580699-28580718 | MS.gene032907:CDS | 40.0% |
| !! | CAGAAAGTGTTTGGTACCTT+TGG | + | chr5.3:28579861-28579880 | None:intergenic | 40.0% |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5.3:28579870-28579889 | None:intergenic | 40.0% |
| !! | GTTGCCATTTCGATCCTTTT+AGG | + | chr5.3:28580012-28580031 | None:intergenic | 40.0% |
| !!! | GGTTTTTGGGATGATTGAAG+TGG | - | chr5.3:28580752-28580771 | MS.gene032907:CDS | 40.0% |
| AAGGATCGAAATGGCAACAC+GGG | - | chr5.3:28580014-28580033 | MS.gene032907:CDS | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5.3:28580255-28580274 | None:intergenic | 45.0% | |
| ATCACTCTCTTGTCACCCTT+GGG | - | chr5.3:28579881-28579900 | MS.gene032907:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5.3:28580855-28580874 | None:intergenic | 45.0% | |
| CTTGTACTTGAAGGTTGGCA+TGG | - | chr5.3:28580783-28580802 | MS.gene032907:CDS | 45.0% | |
| GAACCAATGCATGTTTCACG+GGG | + | chr5.3:28579946-28579965 | None:intergenic | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5.3:28579686-28579705 | MS.gene032907:CDS | 45.0% | |
| GGAACCAATGCATGTTTCAC+GGG | + | chr5.3:28579947-28579966 | None:intergenic | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5.3:28580861-28580880 | MS.gene032907:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5.3:28580848-28580867 | MS.gene032907:CDS | 45.0% | |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5.3:28580254-28580273 | None:intergenic | 45.0% | |
| TACAAGGGGGCAACTTATGA+AGG | - | chr5.3:28580323-28580342 | MS.gene032907:CDS | 45.0% | |
| ! | TTGGGGGCTAAAGAGTTTTG+TGG | - | chr5.3:28580686-28580705 | MS.gene032907:CDS | 45.0% |
| ! | TTTGGGATGATTGAAGTGGG+TGG | - | chr5.3:28580756-28580775 | MS.gene032907:CDS | 45.0% |
| !! | TATCGGAGACACTGGTTTGT+TGG | - | chr5.3:28580113-28580132 | MS.gene032907:CDS | 45.0% |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5.3:28580412-28580431 | MS.gene032907:CDS | 50.0% | |
| CCAAGTAGTTTCCAACGACG+TGG | + | chr5.3:28580164-28580183 | None:intergenic | 50.0% | |
| CCACGTCGTTGGAAACTACT+TGG | - | chr5.3:28580161-28580180 | MS.gene032907:CDS | 50.0% | |
| CTTCCCCGTGAAACATGCAT+TGG | - | chr5.3:28579940-28579959 | MS.gene032907:CDS | 50.0% | |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5.3:28579880-28579899 | MS.gene032907:CDS | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5.3:28579691-28579710 | MS.gene032907:CDS | 50.0% | |
| GGTTCGTCGAAGCTTGAATC+CGG | - | chr5.3:28580182-28580201 | MS.gene032907:CDS | 50.0% | |
| GTACTTGAAGGTTGGCATGG+TGG | - | chr5.3:28580786-28580805 | MS.gene032907:CDS | 50.0% | |
| TCACTAGGTAACCACGTCGT+TGG | - | chr5.3:28580150-28580169 | MS.gene032907:CDS | 50.0% | |
| TCACTCTCTTGTCACCCTTG+GGG | - | chr5.3:28579882-28579901 | MS.gene032907:CDS | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5.3:28580248-28580267 | MS.gene032907:CDS | 50.0% | |
| ! | AGGTTGGCATGGTGGTGAAA+TGG | - | chr5.3:28580794-28580813 | MS.gene032907:CDS | 50.0% |
| ! | GGTCGTTGGGGGTACAAATT+TGG | - | chr5.3:28579712-28579731 | MS.gene032907:CDS | 50.0% |
| ! | GGTTGGCATGGTGGTGAAAT+GGG | - | chr5.3:28580795-28580814 | MS.gene032907:CDS | 50.0% |
| ! | TGGGGGTACAAATTTGGTCG+AGG | - | chr5.3:28579718-28579737 | MS.gene032907:CDS | 50.0% |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5.3:28579699-28579718 | MS.gene032907:CDS | 50.0% |
| CGCGCTTATATCGGAGACAC+TGG | - | chr5.3:28580105-28580124 | MS.gene032907:CDS | 55.0% | |
| GATGCCGCACGCGCTTATAT+CGG | - | chr5.3:28580096-28580115 | MS.gene032907:CDS | 55.0% | |
| GTCTCCGATATAAGCGCGTG+CGG | + | chr5.3:28580103-28580122 | None:intergenic | 55.0% | |
| TACCCCCAACGACCAAACCA+TGG | + | chr5.3:28579706-28579725 | None:intergenic | 55.0% | |
| ! | GACTAAGGCGCTTGTGCTGA+AGG | + | chr5.3:28579968-28579987 | None:intergenic | 55.0% |
| !! | AGCCATGGTTTGGTCGTTGG+GGG | - | chr5.3:28579701-28579720 | MS.gene032907:CDS | 55.0% |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5.3:28579700-28579719 | MS.gene032907:CDS | 55.0% |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5.3:28579698-28579717 | MS.gene032907:CDS | 55.0% |
| GGCAACACGGGTCATTGTCG+AGG | - | chr5.3:28580026-28580045 | MS.gene032907:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 28579664 | 28581043 | 28579664 | ID=MS.gene032907 |
| chr5.3 | mRNA | 28579664 | 28581043 | 28579664 | ID=MS.gene032907.t1;Parent=MS.gene032907 |
| chr5.3 | exon | 28579664 | 28581043 | 28579664 | ID=MS.gene032907.t1.exon1;Parent=MS.gene032907.t1 |
| chr5.3 | CDS | 28579664 | 28581043 | 28579664 | ID=cds.MS.gene032907.t1;Parent=MS.gene032907.t1 |
| Gene Sequence |
| Protein sequence |
