Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03294.t1 | XP_027922914.1 | 48.4 | 122 | 63 | 0 | 42 | 163 | 39 | 160 | 3.40E-26 | 128.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03294.t1 | A0A2K3JN18 | 50.9 | 116 | 56 | 1 | 48 | 162 | 32 | 147 | 4.1e-26 | 127.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene03294.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03294.t1 | MTR_0856s0010 | 40.940 | 149 | 85 | 2 | 16 | 163 | 4 | 150 | 9.92e-32 | 111 |
MS.gene03294.t1 | MTR_1g019850 | 30.137 | 146 | 90 | 5 | 20 | 159 | 41 | 180 | 2.64e-14 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 36 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTGTTGATGTTTCGGATTC+CGG | 0.181586 | 6.2:-30446466 | MS.gene03294:CDS |
GATCGCAAACCCTTGTTTCA+TGG | 0.299904 | 6.2:+30446339 | None:intergenic |
GTGTTGATGTTTCGGATTCC+GGG | 0.331005 | 6.2:-30446465 | MS.gene03294:CDS |
TTGCTTTAAAGAAGGGTCTA+TGG | 0.361166 | 6.2:-30446168 | MS.gene03294:CDS |
TGCTGCTCGTGTTGATGTTT+CGG | 0.374211 | 6.2:-30446473 | MS.gene03294:CDS |
TATCGGTATGTCTATTAAAT+CGG | 0.409891 | 6.2:-30446395 | MS.gene03294:CDS |
TCTCCATCAGGGGCTAATAA+AGG | 0.410771 | 6.2:+30446508 | None:intergenic |
GCAAACAATCGTGATTTACT+TGG | 0.414132 | 6.2:+30446103 | None:intergenic |
AAAGGATGATCGATCAATAT+AGG | 0.415391 | 6.2:+30446526 | None:intergenic |
AGTAAATCACGATTGTTTGC+TGG | 0.430968 | 6.2:-30446100 | MS.gene03294:CDS |
AAAACTAGAAACTCTAAGAA+AGG | 0.460549 | 6.2:-30446316 | MS.gene03294:CDS |
TTAATAGACATACCGATAGT+AGG | 0.461742 | 6.2:+30446400 | None:intergenic |
GATAACGGTTGCTTTAAAGA+AGG | 0.473052 | 6.2:-30446176 | MS.gene03294:CDS |
GAGCAATCAAGTTTCTTCGT+TGG | 0.480101 | 6.2:+30446205 | None:intergenic |
CCGTCATCTAGCTCTCCATC+AGG | 0.480197 | 6.2:+30446496 | None:intergenic |
ATTTGTTGTTTCAAAGGTCC+CGG | 0.485747 | 6.2:+30446447 | None:intergenic |
GACAGCATTTGTTGTTTCAA+AGG | 0.491833 | 6.2:+30446441 | None:intergenic |
CTTGTTTCATGGCATATTCA+CGG | 0.492232 | 6.2:+30446350 | None:intergenic |
CGTGAATATGCCATGAAACA+AGG | 0.498225 | 6.2:-30446349 | MS.gene03294:CDS |
GTTGGATTCGTCTTCAAAGT+TGG | 0.502236 | 6.2:+30446223 | None:intergenic |
CACTTATGCTCGATGGCTGA+CGG | 0.509764 | 6.2:-30446553 | None:intergenic |
ATAACGGTTGCTTTAAAGAA+GGG | 0.522275 | 6.2:-30446175 | MS.gene03294:CDS |
AAACTAGAAACTCTAAGAAA+GGG | 0.523644 | 6.2:-30446315 | MS.gene03294:CDS |
CGTCATCTAGCTCTCCATCA+GGG | 0.529370 | 6.2:+30446497 | None:intergenic |
GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 6.2:+30446226 | None:intergenic |
CATCCTTTATTAGCCCCTGA+TGG | 0.541554 | 6.2:-30446511 | MS.gene03294:CDS |
AACTCTAAGAAAGGGTCAGA+TGG | 0.545893 | 6.2:-30446307 | MS.gene03294:CDS |
TTGGTGGTATGTTTGATTCG+TGG | 0.550924 | 6.2:+30446242 | None:intergenic |
TGATTGCTCAGCTAAGATAA+CGG | 0.550952 | 6.2:-30446191 | MS.gene03294:CDS |
ATTCTAACTTGTGCAAGAGA+AGG | 0.552020 | 6.2:-30446268 | MS.gene03294:CDS |
GATGAATTCACGCCTACTAT+CGG | 0.575926 | 6.2:-30446412 | MS.gene03294:CDS |
GTGAATATGCCATGAAACAA+GGG | 0.602322 | 6.2:-30446348 | MS.gene03294:CDS |
GTCATCTAGCTCTCCATCAG+GGG | 0.623144 | 6.2:+30446498 | None:intergenic |
AGATTGATATGCATGCATAG+TGG | 0.627055 | 6.2:-30446069 | None:intergenic |
GGATGATCGATCAATATAGG+AGG | 0.639611 | 6.2:+30446529 | None:intergenic |
CCTGATGGAGAGCTAGATGA+CGG | 0.653770 | 6.2:-30446496 | MS.gene03294:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TATCGGTATGTCTATTAAAT+CGG | - | chr6.2:30446218-30446237 | MS.gene03294:CDS | 25.0% |
!! | AAAACTAGAAACTCTAAGAA+AGG | - | chr6.2:30446297-30446316 | MS.gene03294:CDS | 25.0% |
!! | AAACTAGAAACTCTAAGAAA+GGG | - | chr6.2:30446298-30446317 | MS.gene03294:CDS | 25.0% |
AAAGGATGATCGATCAATAT+AGG | + | chr6.2:30446090-30446109 | None:intergenic | 30.0% | |
TTAATAGACATACCGATAGT+AGG | + | chr6.2:30446216-30446235 | None:intergenic | 30.0% | |
!! | ATAACGGTTGCTTTAAAGAA+GGG | - | chr6.2:30446438-30446457 | MS.gene03294:CDS | 30.0% |
AGTAAATCACGATTGTTTGC+TGG | - | chr6.2:30446513-30446532 | MS.gene03294:CDS | 35.0% | |
CTTGTTTCATGGCATATTCA+CGG | + | chr6.2:30446266-30446285 | None:intergenic | 35.0% | |
GCAAACAATCGTGATTTACT+TGG | + | chr6.2:30446513-30446532 | None:intergenic | 35.0% | |
GTGAATATGCCATGAAACAA+GGG | - | chr6.2:30446265-30446284 | MS.gene03294:CDS | 35.0% | |
TGATTGCTCAGCTAAGATAA+CGG | - | chr6.2:30446422-30446441 | MS.gene03294:CDS | 35.0% | |
! | ATTCTAACTTGTGCAAGAGA+AGG | - | chr6.2:30446345-30446364 | MS.gene03294:CDS | 35.0% |
!! | ATTTGTTGTTTCAAAGGTCC+CGG | + | chr6.2:30446169-30446188 | None:intergenic | 35.0% |
!! | GACAGCATTTGTTGTTTCAA+AGG | + | chr6.2:30446175-30446194 | None:intergenic | 35.0% |
!! | GATAACGGTTGCTTTAAAGA+AGG | - | chr6.2:30446437-30446456 | MS.gene03294:CDS | 35.0% |
!! | TTGCTTTAAAGAAGGGTCTA+TGG | - | chr6.2:30446445-30446464 | MS.gene03294:CDS | 35.0% |
CGTGAATATGCCATGAAACA+AGG | - | chr6.2:30446264-30446283 | MS.gene03294:CDS | 40.0% | |
GAGCAATCAAGTTTCTTCGT+TGG | + | chr6.2:30446411-30446430 | None:intergenic | 40.0% | |
GATGAATTCACGCCTACTAT+CGG | - | chr6.2:30446201-30446220 | MS.gene03294:CDS | 40.0% | |
GGATGATCGATCAATATAGG+AGG | + | chr6.2:30446087-30446106 | None:intergenic | 40.0% | |
GTTGGATTCGTCTTCAAAGT+TGG | + | chr6.2:30446393-30446412 | None:intergenic | 40.0% | |
! | AACTCTAAGAAAGGGTCAGA+TGG | - | chr6.2:30446306-30446325 | MS.gene03294:CDS | 40.0% |
! | TTGGTGGTATGTTTGATTCG+TGG | + | chr6.2:30446374-30446393 | None:intergenic | 40.0% |
CATCCTTTATTAGCCCCTGA+TGG | - | chr6.2:30446102-30446121 | MS.gene03294:CDS | 45.0% | |
GGATTCGTCTTCAAAGTTGG+TGG | + | chr6.2:30446390-30446409 | None:intergenic | 45.0% | |
TCTCCATCAGGGGCTAATAA+AGG | + | chr6.2:30446108-30446127 | None:intergenic | 45.0% | |
! | CGTGTTGATGTTTCGGATTC+CGG | - | chr6.2:30446147-30446166 | MS.gene03294:CDS | 45.0% |
! | GATCGCAAACCCTTGTTTCA+TGG | + | chr6.2:30446277-30446296 | None:intergenic | 45.0% |
! | GTGTTGATGTTTCGGATTCC+GGG | - | chr6.2:30446148-30446167 | MS.gene03294:CDS | 45.0% |
! | TGCTGCTCGTGTTGATGTTT+CGG | - | chr6.2:30446140-30446159 | MS.gene03294:CDS | 45.0% |
CCTGATGGAGAGCTAGATGA+CGG | - | chr6.2:30446117-30446136 | MS.gene03294:CDS | 50.0% | |
!! | CGTCATCTAGCTCTCCATCA+GGG | + | chr6.2:30446119-30446138 | None:intergenic | 50.0% |
!! | GTCATCTAGCTCTCCATCAG+GGG | + | chr6.2:30446118-30446137 | None:intergenic | 50.0% |
!! | CCGTCATCTAGCTCTCCATC+AGG | + | chr6.2:30446120-30446139 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 30446072 | 30446563 | 30446072 | ID=MS.gene03294 |
chr6.2 | mRNA | 30446072 | 30446563 | 30446072 | ID=MS.gene03294.t1;Parent=MS.gene03294 |
chr6.2 | exon | 30446072 | 30446563 | 30446072 | ID=MS.gene03294.t1.exon1;Parent=MS.gene03294.t1 |
chr6.2 | CDS | 30446072 | 30446563 | 30446072 | ID=cds.MS.gene03294.t1;Parent=MS.gene03294.t1 |
Gene Sequence |
Protein sequence |