AlfalfaGEDB | MS.gene03294

M. sativa cultivar XinJiangDaYe / MS.gene03294

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03294.t1	XP_027922914.1	48.4	122	63	0	42	163	39	160	3.40E-26	128.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03294.t1	A0A2K3JN18	50.9	116	56	1	48	162	32	147	4.1e-26	127.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene03294.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03294.t1	MTR_0856s0010	40.940	149	85	2	16	163	4	150	9.92e-32	111
MS.gene03294.t1	MTR_1g019850	30.137	146	90	5	20	159	41	180	2.64e-14	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 36 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGAAACTCTAAGAA+AGG	0.460549	6.2:-30446316	MS.gene03294:CDS
AAACTAGAAACTCTAAGAAA+GGG	0.523644	6.2:-30446315	MS.gene03294:CDS
AAAGGATGATCGATCAATAT+AGG	0.415391	6.2:+30446526	None:intergenic
AACTCTAAGAAAGGGTCAGA+TGG	0.545893	6.2:-30446307	MS.gene03294:CDS
AGATTGATATGCATGCATAG+TGG	0.627055	6.2:-30446069	None:intergenic
AGTAAATCACGATTGTTTGC+TGG	0.430968	6.2:-30446100	MS.gene03294:CDS
ATAACGGTTGCTTTAAAGAA+GGG	0.522275	6.2:-30446175	MS.gene03294:CDS
ATTCTAACTTGTGCAAGAGA+AGG	0.552020	6.2:-30446268	MS.gene03294:CDS
ATTTGTTGTTTCAAAGGTCC+CGG	0.485747	6.2:+30446447	None:intergenic
CACTTATGCTCGATGGCTGA+CGG	0.509764	6.2:-30446553	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGATGATCGATCAATAT+AGG	+	chr6.2:30446090-30446109	None:intergenic	30.0%
TTAATAGACATACCGATAGT+AGG	+	chr6.2:30446216-30446235	None:intergenic	30.0%
AGTAAATCACGATTGTTTGC+TGG	-	chr6.2:30446513-30446532	MS.gene03294:CDS	35.0%
CTTGTTTCATGGCATATTCA+CGG	+	chr6.2:30446266-30446285	None:intergenic	35.0%
GCAAACAATCGTGATTTACT+TGG	+	chr6.2:30446513-30446532	None:intergenic	35.0%
GTGAATATGCCATGAAACAA+GGG	-	chr6.2:30446265-30446284	MS.gene03294:CDS	35.0%
TGATTGCTCAGCTAAGATAA+CGG	-	chr6.2:30446422-30446441	MS.gene03294:CDS	35.0%
CGTGAATATGCCATGAAACA+AGG	-	chr6.2:30446264-30446283	MS.gene03294:CDS	40.0%
GAGCAATCAAGTTTCTTCGT+TGG	+	chr6.2:30446411-30446430	None:intergenic	40.0%
GATGAATTCACGCCTACTAT+CGG	-	chr6.2:30446201-30446220	MS.gene03294:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	30446072	30446563	30446072	ID=MS.gene03294
chr6.2	mRNA	30446072	30446563	30446072	ID=MS.gene03294.t1;Parent=MS.gene03294
chr6.2	exon	30446072	30446563	30446072	ID=MS.gene03294.t1.exon1;Parent=MS.gene03294.t1
chr6.2	CDS	30446072	30446563	30446072	ID=cds.MS.gene03294.t1;Parent=MS.gene03294.t1

Gene Sequence

>MS.gene03294

ATGGCTGACGGTCCTCCTATATTGATCGATCATCCTTTATTAGCCCCTGATGGAGAGCTAGATGACGGTGCTGCTCGTGTTGATGTTTCGGATTCCGGGACCTTTGAAACAACAAATGCTGTCGCAACAGATGAATTCACGCCTACTATCGGTATGTCTATTAAATCGGTTGCAGATTGTAAGTCTTTTTACCGTGAATATGCCATGAAACAAGGGTTTGCGATCAAAACTAGAAACTCTAAGAAAGGGTCAGATGGCATGTTAAGATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCACGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACTTGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCATTTAATTCATGTCATAATCATGAGATAAGTCCAAGTAAATCACGATTGTTTGCTGGCAATAAGAAGATTGATATGCATGCATAG

Protein sequence

>MS.gene03294.t1

MADGPPILIDHPLLAPDGELDDGAARVDVSDSGTFETTNAVATDEFTPTIGMSIKSVADCKSFYREYAMKQGFAIKTRNSKKGSDGMLRYFILTCAREGHHESNIPPTLKTNPTKKLDCSAKITVALKKGLWTILSFNSCHNHEISPSKSRLFAGNKKIDMHA