AlfalfaGEDB | MS.gene032945

M. sativa cultivar XinJiangDaYe / MS.gene032945

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032945.t1	XP_024639182.1	93.1	202	14	0	1	202	106	307	5.30E-82	313.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032945.t1	Q84X53	45.8	203	109	1	1	202	82	284	1.1e-38	161.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032945.t1	A0A396HQ05	93.1	202	14	0	1	202	106	307	3.8e-82	313.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene032945.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032945.t1	MTR_5g041630	93.500	200	12	1	1	200	106	304	2.24e-129	366
MS.gene032945.t1	MTR_2g049780	49.189	185	94	0	3	187	120	304	9.81e-57	182
MS.gene032945.t1	MTR_2g067230	40.838	191	104	3	3	191	120	303	8.18e-43	146
MS.gene032945.t1	MTR_7g081270	37.113	194	111	4	8	191	91	283	2.69e-30	112
MS.gene032945.t1	MTR_2g034600	33.862	189	119	5	1	188	300	483	1.20e-23	97.8
MS.gene032945.t1	MTR_2g034600	33.862	189	119	5	1	188	361	544	1.74e-23	97.4
MS.gene032945.t1	MTR_2g034600	33.862	189	119	5	1	188	365	548	1.95e-23	97.4
MS.gene032945.t1	MTR_5g094610	30.636	173	117	1	1	170	279	451	1.89e-20	88.6
MS.gene032945.t1	MTR_6g003960	28.125	192	134	3	3	192	403	592	1.20e-17	80.9
MS.gene032945.t1	MTR_4g084630	27.513	189	135	1	1	187	130	318	4.58e-16	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032945.t1	AT2G03050	62.562	203	75	1	1	202	82	284	6.52e-84	250
MS.gene032945.t1	AT2G03050	62.562	203	75	1	1	202	81	283	8.03e-84	250
MS.gene032945.t1	AT2G34620	45.078	193	106	0	1	193	104	296	1.96e-54	176
MS.gene032945.t1	AT2G36000	40.526	190	108	2	3	191	126	311	7.73e-41	141
MS.gene032945.t1	AT2G36000	40.860	186	105	2	3	187	126	307	1.24e-40	141
MS.gene032945.t1	AT3G18870	36.458	192	116	3	3	191	84	272	4.25e-31	114
MS.gene032945.t1	AT1G78930	34.343	198	122	3	1	194	388	581	2.36e-27	108
MS.gene032945.t1	AT4G14605	31.217	189	124	5	1	188	285	468	2.09e-21	91.7
MS.gene032945.t1	AT4G14605	31.217	189	124	5	1	188	285	468	2.09e-21	91.7
MS.gene032945.t1	AT5G55580	30.857	175	114	3	1	170	166	338	7.18e-20	86.7

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Find 40 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAACTTTAGGCAAA+AGG	0.404268	5.4:+28350113	None:intergenic
AAACCAAAAGCAATGTCGTC+TGG	0.503937	5.4:+28350152	None:intergenic
AAACTCAACTTTAGGCAAAA+GGG	0.506451	5.4:+28350114	None:intergenic
AAGCTAAAAGAGAAATACTG+AGG	0.664066	5.4:+28349938	None:intergenic
AAGGAACTTGAGGGAAGATA+AGG	0.475839	5.4:-28349794	None:intergenic
AATATGGTTGTGAGGTCACC+TGG	0.384205	5.4:-28350055	MS.gene032945:CDS
ACACTAAAAGTCAATAACCC+AGG	0.692067	5.4:+28350037	None:intergenic
ACACTACTAACCAACAATCT+AGG	0.454380	5.4:+28350247	None:intergenic
ACCTGCAACATCTCTTGCAA+AGG	0.590277	5.4:+28349860	None:intergenic
ACGTGTGGAGGTTTCGAATA+TGG	0.257392	5.4:-28350071	MS.gene032945:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCAACTTTAGGCAAA+AGG	+	chr5.4:28350068-28350087	None:intergenic	30.0%
AAACTCAACTTTAGGCAAAA+GGG	+	chr5.4:28350067-28350086	None:intergenic	30.0%
AAGCTAAAAGAGAAATACTG+AGG	+	chr5.4:28350243-28350262	None:intergenic	30.0%
CATTGAGAAGAAAATCAAGA+AGG	+	chr5.4:28349864-28349883	None:intergenic	30.0%
TTGAGAAGAAAATCAAGAAG+GGG	+	chr5.4:28349862-28349881	None:intergenic	30.0%
ACACTAAAAGTCAATAACCC+AGG	+	chr5.4:28350144-28350163	None:intergenic	35.0%
ACACTACTAACCAACAATCT+AGG	+	chr5.4:28349934-28349953	None:intergenic	35.0%
CCCATCAAAAACTCAACTTT+AGG	+	chr5.4:28350075-28350094	None:intergenic	35.0%
TGAGAAGAAAATCAAGAAGG+GGG	+	chr5.4:28349861-28349880	None:intergenic	35.0%
AAACCAAAAGCAATGTCGTC+TGG	+	chr5.4:28350029-28350048	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	28349796	28350404	28349796	ID=MS.gene032945
chr5.4	mRNA	28349796	28350404	28349796	ID=MS.gene032945.t1;Parent=MS.gene032945
chr5.4	exon	28349796	28350404	28349796	ID=MS.gene032945.t1.exon1;Parent=MS.gene032945.t1
chr5.4	CDS	28349796	28350404	28349796	ID=cds.MS.gene032945.t1;Parent=MS.gene032945.t1

Gene Sequence

>MS.gene032945

ATGGGTCGAATTCTTGATATGCTTCCAGAACTTCTCACGTGTGAACCACACAGTGATATTTACCCCCTTCTTGATTTTCTTCTCAATGAGGTTGAAATTCCTTACCATGATGTTCAAAAATCAATCTTGCGGTGTCCTAGATTGTTGGTTAGTAGTGTAGAGAATCGATTGAGACCTGCTCTGTGTTTTTTGAGGGAATTAGGGTTTGTTGGGCCCCATTCTCTCACGTGCCAGACGACATTGCTTTTGGTTTCGAGTGTTGAGGATACCCTTTTGCCTAAAGTTGAGTTTTTGATGGGTTTGGGGTTCACACGTGTGGAGGTTTCGAATATGGTTGTGAGGTCACCTGGGTTATTGACTTTTAGTGTGGATAAGAATTTGGCTCCTAAATTTGAGTTTTTCGTGAAGGAGATGAATGGTGATGTTGCTGAGTTGAAGAGGTATCCTCAGTATTTCTCTTTTAGCTTGGAAGGGAGGATTAAGCGGAGGCACGCGATGTTGGTTCGGCTTGGATTGTCGCTTCCTTTGCAAGAGATGTTGCAGGTTAGTGATGGTGGTTTTGATTCTAGGTTGCTTGATTTGCGGTTAAAGGAACTTGAGGGAAGATAA

Protein sequence

>MS.gene032945.t1

MGRILDMLPELLTCEPHSDIYPLLDFLLNEVEIPYHDVQKSILRCPRLLVSSVENRLRPALCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMVVRSPGLLTFSVDKNLAPKFEFFVKEMNGDVAELKRYPQYFSFSLEGRIKRRHAMLVRLGLSLPLQEMLQVSDGGFDSRLLDLRLKELEGR