AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033038.t1 MTR_4g109980 97.516 322 6 1 1 322 1 320 0.0 644
MS.gene033038.t1 MTR_2g059540 63.000 100 37 0 40 139 31 130 4.22e-34 124
MS.gene033038.t1 MTR_2g096740 63.043 92 25 1 40 131 62 144 6.77e-34 126
MS.gene033038.t1 MTR_4g088580 58.879 107 42 2 18 123 32 137 8.36e-34 128
MS.gene033038.t1 MTR_2g096740 63.043 92 25 1 40 131 77 159 8.83e-34 126
MS.gene033038.t1 MTR_8g479350 82.759 58 10 0 36 93 64 121 1.35e-31 121
MS.gene033038.t1 MTR_8g015840 80.000 65 12 1 37 100 17 81 1.76e-31 117
MS.gene033038.t1 MTR_4g063780 67.606 71 23 0 37 107 72 142 3.15e-31 120
MS.gene033038.t1 MTR_4g022370 40.361 166 78 3 19 170 54 212 1.22e-30 119
MS.gene033038.t1 MTR_7g059400 47.581 124 47 2 27 150 63 168 1.69e-30 118
MS.gene033038.t1 MTR_8g068210 70.833 72 18 1 39 107 31 102 7.47e-30 116
MS.gene033038.t1 MTR_8g079060 60.759 79 31 0 37 115 26 104 7.51e-30 114
MS.gene033038.t1 MTR_4g461080 70.270 74 16 1 18 91 13 80 9.12e-30 114
MS.gene033038.t1 MTR_7g024670 82.456 57 10 0 41 97 78 134 1.34e-29 116
MS.gene033038.t1 MTR_5g031440 83.333 54 9 0 37 90 40 93 1.71e-29 115
MS.gene033038.t1 MTR_3g091820 64.865 74 20 1 23 96 32 99 2.31e-29 114
MS.gene033038.t1 MTR_3g077750 56.000 100 38 1 23 122 50 143 6.46e-29 114
MS.gene033038.t1 MTR_2g093220 66.667 81 24 1 37 114 37 117 7.50e-29 112
MS.gene033038.t1 MTR_2g014060 86.275 51 7 0 41 91 26 76 2.37e-28 112
MS.gene033038.t1 MTR_8g027295 53.191 94 36 1 21 114 13 98 3.78e-28 110
MS.gene033038.t1 MTR_3g090430 74.194 62 16 0 42 103 53 114 6.66e-28 111
MS.gene033038.t1 MTR_1g056810 77.966 59 13 0 36 94 8 66 4.26e-27 108
MS.gene033038.t1 MTR_1g077600 72.414 58 16 0 37 94 40 97 6.06e-27 107
MS.gene033038.t1 MTR_1g077600 72.414 58 16 0 37 94 40 97 7.09e-27 107
MS.gene033038.t1 MTR_7g010950 71.186 59 17 0 38 96 133 191 1.74e-26 109
MS.gene033038.t1 MTR_2g013370 70.769 65 18 1 30 94 36 99 2.74e-26 105
MS.gene033038.t1 MTR_8g044220 68.966 58 18 0 38 95 116 173 3.23e-26 108
MS.gene033038.t1 MTR_2g014170 84.000 50 8 0 39 88 44 93 5.30e-26 105
MS.gene033038.t1 MTR_2g016030 68.421 57 18 0 37 93 44 100 9.75e-26 100
MS.gene033038.t1 MTR_7g086780 46.316 95 51 0 38 132 97 191 1.67e-25 105
MS.gene033038.t1 MTR_6g012450 67.797 59 19 0 38 96 134 192 2.24e-25 106
MS.gene033038.t1 MTR_4g082060 67.857 56 18 0 38 93 120 175 1.50e-24 103
MS.gene033038.t1 MTR_3g435480 58.904 73 23 1 31 96 120 192 3.15e-24 102
MS.gene033038.t1 MTR_5g041420 67.797 59 19 0 38 96 136 194 5.41e-24 100
MS.gene033038.t1 MTR_6g027460 46.000 100 50 1 38 137 94 189 6.07e-24 100
MS.gene033038.t1 MTR_6g027450 63.158 57 21 0 38 94 87 143 3.20e-23 98.2
MS.gene033038.t1 MTR_5g041530 63.077 65 23 1 30 93 129 193 3.72e-23 99.0
MS.gene033038.t1 MTR_5g041380 66.102 59 20 0 38 96 125 183 6.99e-23 97.8
MS.gene033038.t1 MTR_5g041400 66.102 59 20 0 38 96 117 175 1.35e-22 97.1
MS.gene033038.t1 MTR_4g089095 35.714 168 79 3 38 203 48 188 3.82e-16 77.8
MS.gene033038.t1 MTR_4g089095 35.714 168 79 3 38 203 14 154 4.76e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033038.t1 AT5G60850 42.857 322 114 12 23 322 34 307 4.01e-55 182
MS.gene033038.t1 AT1G51700 76.712 73 16 1 37 108 30 102 1.75e-33 122
MS.gene033038.t1 AT5G65590 75.758 66 16 0 36 101 37 102 1.65e-32 123
MS.gene033038.t1 AT5G60200 67.949 78 19 1 39 116 54 125 2.88e-32 121
MS.gene033038.t1 AT5G66940 56.989 93 34 1 36 122 28 120 2.09e-31 117
MS.gene033038.t1 AT3G45610 66.234 77 19 1 37 113 37 106 4.37e-31 117
MS.gene033038.t1 AT2G37590 68.116 69 22 0 27 95 76 144 9.81e-31 119
MS.gene033038.t1 AT2G28510 42.778 180 79 5 35 202 43 210 2.73e-30 116
MS.gene033038.t1 AT1G07640 79.310 58 12 0 40 97 21 78 3.01e-30 116
MS.gene033038.t1 AT1G07640 79.310 58 12 0 40 97 77 134 4.09e-30 117
MS.gene033038.t1 AT1G07640 79.310 58 12 0 40 97 85 142 5.45e-30 117
MS.gene033038.t1 AT2G28810 83.019 53 9 0 39 91 76 128 1.14e-29 115
MS.gene033038.t1 AT3G61850 65.000 80 20 1 24 103 54 125 1.17e-29 114
MS.gene033038.t1 AT3G61850 65.000 80 20 1 24 103 54 125 1.17e-29 114
MS.gene033038.t1 AT4G38000 63.750 80 20 2 20 90 12 91 1.24e-29 114
MS.gene033038.t1 AT3G52440 71.053 76 17 2 27 102 14 84 1.25e-29 114
MS.gene033038.t1 AT3G61850 65.000 80 20 1 24 103 66 137 1.38e-29 115
MS.gene033038.t1 AT2G28810 83.019 53 9 0 39 91 93 145 1.64e-29 115
MS.gene033038.t1 AT3G52440 71.053 76 17 2 27 102 33 103 1.68e-29 114
MS.gene033038.t1 AT3G61850 65.000 80 20 1 24 103 54 125 1.89e-29 115
MS.gene033038.t1 AT3G61850 65.000 80 20 1 24 103 66 137 2.00e-29 115
MS.gene033038.t1 AT3G50410 61.905 84 28 1 18 97 4 87 2.65e-29 113
MS.gene033038.t1 AT3G21270 88.679 53 6 0 40 92 29 81 2.72e-29 111
MS.gene033038.t1 AT3G55370 69.118 68 21 0 35 102 71 138 3.88e-29 114
MS.gene033038.t1 AT3G55370 69.118 68 21 0 35 102 71 138 5.48e-29 114
MS.gene033038.t1 AT3G55370 69.118 68 21 0 35 102 116 183 7.63e-29 114
MS.gene033038.t1 AT1G28310 77.966 59 13 0 40 98 27 85 7.91e-29 113
MS.gene033038.t1 AT5G02460 75.000 60 15 0 35 94 90 149 8.83e-29 114
MS.gene033038.t1 AT4G21050 55.882 102 38 2 42 137 26 126 1.16e-28 110
MS.gene033038.t1 AT1G28310 77.966 59 13 0 40 98 51 109 1.37e-28 113
MS.gene033038.t1 AT4G24060 63.514 74 21 1 21 94 40 107 3.26e-28 112
MS.gene033038.t1 AT5G62940 69.565 69 15 1 22 90 61 123 7.22e-28 111
MS.gene033038.t1 AT1G21340 80.357 56 11 0 42 97 40 95 7.48e-28 109
MS.gene033038.t1 AT4G00940 64.103 78 28 0 37 114 65 142 2.88e-26 105
MS.gene033038.t1 AT4G00940 64.103 78 28 0 37 114 65 142 2.88e-26 105
MS.gene033038.t1 AT4G00940 64.103 78 28 0 37 114 65 142 2.88e-26 105
MS.gene033038.t1 AT1G29160 71.429 56 16 0 38 93 60 115 1.65e-25 100
MS.gene033038.t1 AT2G34140 71.429 56 16 0 38 93 56 111 1.92e-25 100
MS.gene033038.t1 AT3G47500 69.492 59 18 0 38 96 108 166 2.15e-25 105
MS.gene033038.t1 AT2G46590 54.321 81 29 1 7 87 43 115 3.17e-25 104
MS.gene033038.t1 AT2G46590 54.321 81 29 1 7 87 55 127 3.50e-25 104
MS.gene033038.t1 AT1G64620 61.194 67 20 1 23 89 38 98 3.69e-25 103
MS.gene033038.t1 AT5G39660 69.643 56 17 0 38 93 136 191 9.60e-25 104
MS.gene033038.t1 AT5G39660 69.643 56 17 0 38 93 136 191 9.60e-25 104
MS.gene033038.t1 AT5G39660 69.643 56 17 0 38 93 136 191 9.60e-25 104
MS.gene033038.t1 AT5G62430 64.407 59 21 0 38 96 52 110 3.18e-24 100
MS.gene033038.t1 AT1G69570 69.643 56 17 0 38 93 130 185 5.00e-24 101
MS.gene033038.t1 AT1G47655 74.510 51 13 0 38 88 27 77 5.10e-24 97.8
MS.gene033038.t1 AT1G26790 66.071 56 19 0 38 93 109 164 3.46e-23 99.0
MS.gene033038.t1 AT4G21040 42.069 145 67 3 42 169 27 171 4.60e-23 95.9
MS.gene033038.t1 AT4G21080 68.966 58 17 1 42 98 27 84 1.34e-21 92.4
MS.gene033038.t1 AT4G21030 55.882 68 27 1 42 109 23 87 4.93e-16 75.9

Find 94 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAGAGCGTTTGGATTTC+CGG 0.179446 8.2:-16081009 None:intergenic
TTCTGGTTCTGGATCGTTGC+TGG 0.241672 8.2:+16081498 MS.gene033038:CDS
GTTATTGTAGTAGCAGAATT+TGG 0.264718 8.2:-16080891 None:intergenic
TCCCCGTCGGTGGCGGTTGC+CGG 0.275837 8.2:+16080990 MS.gene033038:CDS
GAGGACATTTCATGACTTCT+TGG 0.303639 8.2:-16080850 None:intergenic
AAAACAAGCAACGGTGGATT+TGG 0.307667 8.2:+16081553 MS.gene033038:CDS
GGTTCAGGTTGTTGTTGTTT+TGG 0.310471 8.2:-16080829 None:intergenic
GAGACATTGCCGTTTGGTTT+TGG 0.311028 8.2:+16081298 MS.gene033038:CDS
CGGTAACGCTCATCAGCTTT+TGG 0.328939 8.2:-16081396 None:intergenic
ACGGTAATGTTAACGTTAAC+GGG 0.351619 8.2:+16081341 MS.gene033038:CDS
CAAAAGCTGATGAGCGTTAC+CGG 0.354847 8.2:+16081397 MS.gene033038:CDS
ACACCGTTGATCATGGTTAC+TGG 0.364180 8.2:+16081635 MS.gene033038:CDS
GACTTATTCTCCGGCGCCTC+CGG 0.380062 8.2:-16081082 None:intergenic
TTCTTCTCCGGCGGTGGTGT+TGG 0.390782 8.2:-16081172 None:intergenic
ATTTCATGACTTCTTGGTTC+AGG 0.391447 8.2:-16080844 None:intergenic
TAACCATGATCAACGGTGTT+AGG 0.392627 8.2:-16081631 None:intergenic
AACGGTAATGTTAACGTTAA+CGG 0.394532 8.2:+16081340 MS.gene033038:CDS
ATAGGTGCTGGTGCTGGTGG+GGG 0.397991 8.2:+16081469 MS.gene033038:CDS
GTAGCAGAATTTGGTGTTGA+TGG 0.409600 8.2:-16080882 None:intergenic
AATATAGGTGCTGGTGCTGG+TGG 0.411942 8.2:+16081466 MS.gene033038:CDS
GGCGCCTCCGGTGGAGTTGT+CGG 0.413936 8.2:-16081070 None:intergenic
TATAGGTGCTGGTGCTGGTG+GGG 0.419125 8.2:+16081468 MS.gene033038:CDS
CAACGGTGGATTTGGATCGT+TGG 0.423030 8.2:+16081561 MS.gene033038:CDS
ATATAGGTGCTGGTGCTGGT+GGG 0.429106 8.2:+16081467 MS.gene033038:CDS
CACCGCAGCGGCGGTGAGGC+TGG 0.433116 8.2:-16081131 None:intergenic
CGCCACCGACGGGGACGTTA+CGG 0.435705 8.2:-16080982 None:intergenic
AAACGGCAATGTCTCGTTAG+AGG 0.437377 8.2:-16081290 None:intergenic
GGTTCCTCCGGCGCCTCCGA+TGG 0.440934 8.2:-16080762 None:intergenic
AGACGCATTGAAGTTGTTAC+CGG 0.443650 8.2:+16081441 MS.gene033038:CDS
GTGGATTTGGATCGTTGGAT+TGG 0.444872 8.2:+16081566 MS.gene033038:CDS
CTTCCTAACACCGTTGATCA+TGG 0.449712 8.2:+16081628 MS.gene033038:CDS
TTCCGGCAACCGCCACCGAC+GGG 0.461760 8.2:-16080992 None:intergenic
CAGCCTCACCGCCGCTGCGG+TGG 0.464633 8.2:+16081132 MS.gene033038:CDS
GCCTCCACCACTGAAGAATC+TGG 0.466306 8.2:-16080783 None:intergenic
TCACACTCAATGGTCTGATC+AGG 0.473669 8.2:+16081660 MS.gene033038:CDS
AAGTTGTTACCGGAGAATAT+AGG 0.476958 8.2:+16081451 MS.gene033038:CDS
TAACGTTAACATTACCGTTA+CGG 0.477277 8.2:-16081336 None:intergenic
GATTCACTTGAACAAGGAAC+AGG 0.481996 8.2:+16081217 MS.gene033038:CDS
CGTAACGTCCCCGTCGGTGG+CGG 0.482120 8.2:+16080983 MS.gene033038:CDS
TCAGTGGTGGAGGCGGTGAT+CGG 0.482140 8.2:+16080792 MS.gene033038:CDS
GGAACTCTCACTGCTGGAAT+GGG 0.482309 8.2:-16081110 None:intergenic
TGGAACTCTCACTGCTGGAA+TGG 0.493236 8.2:-16081111 None:intergenic
TCTAACGAGACATTGCCGTT+TGG 0.499608 8.2:+16081292 MS.gene033038:CDS
GACAACTCCACCGGAGGCGC+CGG 0.504458 8.2:+16081072 MS.gene033038:CDS
CAACATTCCATCGGAGGCGC+CGG 0.516567 8.2:+16080755 MS.gene033038:CDS
GAGGCTGGAACTCTCACTGC+TGG 0.519133 8.2:-16081116 None:intergenic
TTTCCGGCAACCGCCACCGA+CGG 0.522246 8.2:-16080993 None:intergenic
TGCCGACGTTACTGGACTAA+AGG 0.527907 8.2:+16080950 MS.gene033038:CDS
CTCCGTAACGTCCCCGTCGG+TGG 0.530524 8.2:+16080980 MS.gene033038:CDS
TTATTCTCCGGCGCCTCCGG+TGG 0.532938 8.2:-16081079 None:intergenic
CAGCCACCGCAGCGGCGGTG+AGG 0.533594 8.2:-16081135 None:intergenic
ACCAGATTCTTCAGTGGTGG+AGG 0.541259 8.2:+16080782 MS.gene033038:CDS
ATGATGCGTCGTCGTTTCAG+TGG 0.549551 8.2:+16081368 MS.gene033038:CDS
CATTCCATCGGAGGCGCCGG+AGG 0.561089 8.2:+16080758 MS.gene033038:CDS
TTTGGATCGTTGGATTGGAA+TGG 0.568406 8.2:+16081571 MS.gene033038:CDS
TGGGAGTTAGACTTATTCTC+CGG 0.569296 8.2:-16081091 None:intergenic
ACTGAAGAATCTGGTTCCTC+CGG 0.571115 8.2:-16080774 None:intergenic
AGATTCTTCAGTGGTGGAGG+CGG 0.571847 8.2:+16080785 MS.gene033038:CDS
TTCAGAACCAACACCACCGC+CGG 0.573448 8.2:+16081165 MS.gene033038:CDS
GTTACTGGAATCACACTCAA+TGG 0.574806 8.2:+16081650 MS.gene033038:CDS
TTACCGGAGAATATAGGTGC+TGG 0.577924 8.2:+16081457 MS.gene033038:CDS
CGGTAAAACAGTGGAATCTG+AGG 0.581795 8.2:-16081050 None:intergenic
GTCCTCCGTAACGTCCCCGT+CGG 0.588295 8.2:+16080977 MS.gene033038:CDS
TGTTTCAGCCACCGCAGCGG+CGG 0.589914 8.2:-16081140 None:intergenic
GAGAATATAGGTGCTGGTGC+TGG 0.591108 8.2:+16081463 MS.gene033038:CDS
TTCCAGCCTCACCGCCGCTG+CGG 0.594936 8.2:+16081129 MS.gene033038:CDS
GCACCAGCACCTATATTCTC+CGG 0.599864 8.2:-16081460 None:intergenic
AGAAGTGACGAGGCTGAGAG+AGG 0.604907 8.2:-16080919 None:intergenic
GAACAAGGAACAGGTGATTG+TGG 0.605175 8.2:+16081226 MS.gene033038:CDS
TCCGGCAACCGCCACCGACG+GGG 0.606442 8.2:-16080991 None:intergenic
GGAACCAGATTCTTCAGTGG+TGG 0.610190 8.2:+16080779 MS.gene033038:CDS
TTACCGATACCAAAACCAAA+CGG 0.611130 8.2:-16081307 None:intergenic
CTGCAGAGTAAAACAAGCAA+CGG 0.614794 8.2:+16081544 MS.gene033038:CDS
TCGTTGGATTGGAATGGTGA+CGG 0.617509 8.2:+16081577 MS.gene033038:CDS
GAGAATGATTCACTTGAACA+AGG 0.621864 8.2:+16081211 MS.gene033038:CDS
GACGGTGGTGCAGATCATCA+AGG 0.629904 8.2:+16081595 MS.gene033038:CDS
TCTGGATCGTTGCTGGACCA+TGG 0.630293 8.2:+16081505 MS.gene033038:CDS
CAGAGTAAAACAAGCAACGG+TGG 0.633363 8.2:+16081547 MS.gene033038:CDS
GAGATACAACATTCCATCGG+AGG 0.634291 8.2:+16080749 MS.gene033038:CDS
GCAAAGAGAAATCAATACCA+TGG 0.638840 8.2:-16081522 None:intergenic
AACTGTTTCAGCCACCGCAG+CGG 0.652527 8.2:-16081143 None:intergenic
ATCGGTAACGATAACCGTAA+CGG 0.654058 8.2:+16081322 MS.gene033038:CDS
TAAAACAGTGGAATCTGAGG+AGG 0.660488 8.2:-16081047 None:intergenic
TTTACCGACAACTCCACCGG+AGG 0.660654 8.2:+16081066 MS.gene033038:CDS
CGCCTTTAGTCCAGTAACGT+CGG 0.661444 8.2:-16080952 None:intergenic
CACCGACGGGGACGTTACGG+AGG 0.667570 8.2:-16080979 None:intergenic
CAGGAGATACAACATTCCAT+CGG 0.667929 8.2:+16080746 MS.gene033038:CDS
TGGAGTTGTCGGTAAAACAG+TGG 0.668985 8.2:-16081059 None:intergenic
ATTCCAGTAACCATGATCAA+CGG 0.674918 8.2:-16081638 None:intergenic
CCGGAGAAGAAAATCAACAA+AGG 0.680379 8.2:+16081184 MS.gene033038:CDS
CGACGTTACTGGACTAAAGG+CGG 0.694270 8.2:+16080953 MS.gene033038:CDS
GGAGGAACCAGATTCTTCAG+TGG 0.695984 8.2:+16080776 MS.gene033038:CDS
GTGTTGATGGAGTCACAGCG+AGG 0.726737 8.2:-16080869 None:intergenic
TTGGATTGGAATGGTGACGG+TGG 0.733534 8.2:+16081580 MS.gene033038:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AACGGTAATGTTAACGTTAA+CGG + chr8.2:16081340-16081359 MS.gene033038:CDS 30.0%
GTTATTGTAGTAGCAGAATT+TGG - chr8.2:16080894-16080913 None:intergenic 30.0%
TAACGTTAACATTACCGTTA+CGG - chr8.2:16081339-16081358 None:intergenic 30.0%
AAGTTGTTACCGGAGAATAT+AGG + chr8.2:16081451-16081470 MS.gene033038:CDS 35.0%
ACGGTAATGTTAACGTTAAC+GGG + chr8.2:16081341-16081360 MS.gene033038:CDS 35.0%
ATTCCAGTAACCATGATCAA+CGG - chr8.2:16081641-16081660 None:intergenic 35.0%
ATTTCATGACTTCTTGGTTC+AGG - chr8.2:16080847-16080866 None:intergenic 35.0%
GAGAATGATTCACTTGAACA+AGG + chr8.2:16081211-16081230 MS.gene033038:CDS 35.0%
GCAAAGAGAAATCAATACCA+TGG - chr8.2:16081525-16081544 None:intergenic 35.0%
TTACCGATACCAAAACCAAA+CGG - chr8.2:16081310-16081329 None:intergenic 35.0%
!! TTCATGATGTTTTTGATCGC+CGG - chr8.2:16081419-16081438 None:intergenic 35.0%
!!! AGGTTGTTGTTGTTTTGGTT+GGG - chr8.2:16080827-16080846 None:intergenic 35.0%
!!! CCTTTGTTGATTTTCTTCTC+CGG - chr8.2:16081187-16081206 None:intergenic 35.0%
!!! TCTGAGGAGGAAGATTTTTT+TGG - chr8.2:16081037-16081056 None:intergenic 35.0%
AGACGCATTGAAGTTGTTAC+CGG + chr8.2:16081441-16081460 MS.gene033038:CDS 40.0%
ATCGGTAACGATAACCGTAA+CGG + chr8.2:16081322-16081341 MS.gene033038:CDS 40.0%
CAGGAGATACAACATTCCAT+CGG + chr8.2:16080746-16080765 MS.gene033038:CDS 40.0%
CCGGAGAAGAAAATCAACAA+AGG + chr8.2:16081184-16081203 MS.gene033038:CDS 40.0%
CTGCAGAGTAAAACAAGCAA+CGG + chr8.2:16081544-16081563 MS.gene033038:CDS 40.0%
GAGGACATTTCATGACTTCT+TGG - chr8.2:16080853-16080872 None:intergenic 40.0%
GATTCACTTGAACAAGGAAC+AGG + chr8.2:16081217-16081236 MS.gene033038:CDS 40.0%
GTTACTGGAATCACACTCAA+TGG + chr8.2:16081650-16081669 MS.gene033038:CDS 40.0%
TAAAACAGTGGAATCTGAGG+AGG - chr8.2:16081050-16081069 None:intergenic 40.0%
TAACCATGATCAACGGTGTT+AGG - chr8.2:16081634-16081653 None:intergenic 40.0%
TGGGAGTTAGACTTATTCTC+CGG - chr8.2:16081094-16081113 None:intergenic 40.0%
! AAAACAAGCAACGGTGGATT+TGG + chr8.2:16081553-16081572 MS.gene033038:CDS 40.0%
! TTTGGATCGTTGGATTGGAA+TGG + chr8.2:16081571-16081590 MS.gene033038:CDS 40.0%
!! GTAGCAGAATTTGGTGTTGA+TGG - chr8.2:16080885-16080904 None:intergenic 40.0%
!!! CAGGTTGTTGTTGTTTTGGT+TGG - chr8.2:16080828-16080847 None:intergenic 40.0%
!!! GGTTCAGGTTGTTGTTGTTT+TGG - chr8.2:16080832-16080851 None:intergenic 40.0%
!!! TTGCCGTTTGGTTTTGGTAT+CGG + chr8.2:16081304-16081323 MS.gene033038:CDS 40.0%
!!! TTGTTGATTTTCTTCTCCGG+CGG - chr8.2:16081184-16081203 None:intergenic 40.0%
!!! TTTTGGTTTGCTAGAGCGTT+TGG - chr8.2:16081020-16081039 None:intergenic 40.0%
AAACGGCAATGTCTCGTTAG+AGG - chr8.2:16081293-16081312 None:intergenic 45.0%
ACACCGTTGATCATGGTTAC+TGG + chr8.2:16081635-16081654 MS.gene033038:CDS 45.0%
CAAAAGCTGATGAGCGTTAC+CGG + chr8.2:16081397-16081416 MS.gene033038:CDS 45.0%
CAGAGTAAAACAAGCAACGG+TGG + chr8.2:16081547-16081566 MS.gene033038:CDS 45.0%
CGGTAAAACAGTGGAATCTG+AGG - chr8.2:16081053-16081072 None:intergenic 45.0%
CTTCCTAACACCGTTGATCA+TGG + chr8.2:16081628-16081647 MS.gene033038:CDS 45.0%
GAACAAGGAACAGGTGATTG+TGG + chr8.2:16081226-16081245 MS.gene033038:CDS 45.0%
GAGATACAACATTCCATCGG+AGG + chr8.2:16080749-16080768 MS.gene033038:CDS 45.0%
GTGGATTTGGATCGTTGGAT+TGG + chr8.2:16081566-16081585 MS.gene033038:CDS 45.0%
TCACACTCAATGGTCTGATC+AGG + chr8.2:16081660-16081679 MS.gene033038:CDS 45.0%
TCTAACGAGACATTGCCGTT+TGG + chr8.2:16081292-16081311 MS.gene033038:CDS 45.0%
TGGAGTTGTCGGTAAAACAG+TGG - chr8.2:16081062-16081081 None:intergenic 45.0%
TTACCGGAGAATATAGGTGC+TGG + chr8.2:16081457-16081476 MS.gene033038:CDS 45.0%
! ACTGAAGAATCTGGTTCCTC+CGG - chr8.2:16080777-16080796 None:intergenic 45.0%
! CAGTTTTTGCAGAAGTGACG+AGG - chr8.2:16080932-16080951 None:intergenic 45.0%
! TCGTTGGATTGGAATGGTGA+CGG + chr8.2:16081577-16081596 MS.gene033038:CDS 45.0%
! TGCTAGAGCGTTTGGATTTC+CGG - chr8.2:16081012-16081031 None:intergenic 45.0%
! TGTTTTACCGACAACTCCAC+CGG + chr8.2:16081063-16081082 MS.gene033038:CDS 45.0%
!! GAGACATTGCCGTTTGGTTT+TGG + chr8.2:16081298-16081317 MS.gene033038:CDS 45.0%
ACCAGATTCTTCAGTGGTGG+AGG + chr8.2:16080782-16080801 MS.gene033038:CDS 50.0%
ATGATGCGTCGTCGTTTCAG+TGG + chr8.2:16081368-16081387 MS.gene033038:CDS 50.0%
CGACGTTACTGGACTAAAGG+CGG + chr8.2:16080953-16080972 MS.gene033038:CDS 50.0%
CGCCTTTAGTCCAGTAACGT+CGG - chr8.2:16080955-16080974 None:intergenic 50.0%
GCAAAAACTGCCGACGTTAC+TGG + chr8.2:16080942-16080961 MS.gene033038:CDS 50.0%
GCACCAGCACCTATATTCTC+CGG - chr8.2:16081463-16081482 None:intergenic 50.0%
GGAACCAGATTCTTCAGTGG+TGG + chr8.2:16080779-16080798 MS.gene033038:CDS 50.0%
GGAACTCTCACTGCTGGAAT+GGG - chr8.2:16081113-16081132 None:intergenic 50.0%
GGAGGAACCAGATTCTTCAG+TGG + chr8.2:16080776-16080795 MS.gene033038:CDS 50.0%
TGCCGACGTTACTGGACTAA+AGG + chr8.2:16080950-16080969 MS.gene033038:CDS 50.0%
TGGAACTCTCACTGCTGGAA+TGG - chr8.2:16081114-16081133 None:intergenic 50.0%
! AGATTCTTCAGTGGTGGAGG+CGG + chr8.2:16080785-16080804 MS.gene033038:CDS 50.0%
! CAACGGTGGATTTGGATCGT+TGG + chr8.2:16081561-16081580 MS.gene033038:CDS 50.0%
! CGGTAACGCTCATCAGCTTT+TGG - chr8.2:16081399-16081418 None:intergenic 50.0%
! TTGATTTTCTTCTCCGGCGG+TGG - chr8.2:16081181-16081200 None:intergenic 50.0%
!! AATATAGGTGCTGGTGCTGG+TGG + chr8.2:16081466-16081485 MS.gene033038:CDS 50.0%
!! ATATAGGTGCTGGTGCTGGT+GGG + chr8.2:16081467-16081486 MS.gene033038:CDS 50.0%
!! GAGAATATAGGTGCTGGTGC+TGG + chr8.2:16081463-16081482 MS.gene033038:CDS 50.0%
!! TTCTGGTTCTGGATCGTTGC+TGG + chr8.2:16081498-16081517 MS.gene033038:CDS 50.0%
!! TTGGATTGGAATGGTGACGG+TGG + chr8.2:16081580-16081599 MS.gene033038:CDS 50.0%
AACTGTTTCAGCCACCGCAG+CGG - chr8.2:16081146-16081165 None:intergenic 55.0%
AGAAGTGACGAGGCTGAGAG+AGG - chr8.2:16080922-16080941 None:intergenic 55.0%
GACGGTGGTGCAGATCATCA+AGG + chr8.2:16081595-16081614 MS.gene033038:CDS 55.0%
GCCTCCACCACTGAAGAATC+TGG - chr8.2:16080786-16080805 None:intergenic 55.0%
TCTGGATCGTTGCTGGACCA+TGG + chr8.2:16081505-16081524 MS.gene033038:CDS 55.0%
TTCAGAACCAACACCACCGC+CGG + chr8.2:16081165-16081184 MS.gene033038:CDS 55.0%
TTTACCGACAACTCCACCGG+AGG + chr8.2:16081066-16081085 MS.gene033038:CDS 55.0%
! GTGTTGATGGAGTCACAGCG+AGG - chr8.2:16080872-16080891 None:intergenic 55.0%
!! TATAGGTGCTGGTGCTGGTG+GGG + chr8.2:16081468-16081487 MS.gene033038:CDS 55.0%
GACTTATTCTCCGGCGCCTC+CGG - chr8.2:16081085-16081104 None:intergenic 60.0%
GAGGCTGGAACTCTCACTGC+TGG - chr8.2:16081119-16081138 None:intergenic 60.0%
TTCTTCTCCGGCGGTGGTGT+TGG - chr8.2:16081175-16081194 None:intergenic 60.0%
! CAACATTCCATCGGAGGCGC+CGG + chr8.2:16080755-16080774 MS.gene033038:CDS 60.0%
! TCAGTGGTGGAGGCGGTGAT+CGG + chr8.2:16080792-16080811 MS.gene033038:CDS 60.0%
!! ATAGGTGCTGGTGCTGGTGG+GGG + chr8.2:16081469-16081488 MS.gene033038:CDS 60.0%
!! GGGGGTGGTTCTTCTGGTTC+TGG + chr8.2:16081487-16081506 MS.gene033038:CDS 60.0%
GCTGGTGGGGGTGGTTCTTC+TGG + chr8.2:16081481-16081500 MS.gene033038:CDS 65.0%
GTCCTCCGTAACGTCCCCGT+CGG + chr8.2:16080977-16080996 MS.gene033038:CDS 65.0%
TGTTTCAGCCACCGCAGCGG+CGG - chr8.2:16081143-16081162 None:intergenic 65.0%
TTATTCTCCGGCGCCTCCGG+TGG - chr8.2:16081082-16081101 None:intergenic 65.0%
TTTCCGGCAACCGCCACCGA+CGG - chr8.2:16080996-16081015 None:intergenic 65.0%
CACCGACGGGGACGTTACGG+AGG - chr8.2:16080982-16081001 None:intergenic 70.0%
CGCCACCGACGGGGACGTTA+CGG - chr8.2:16080985-16081004 None:intergenic 70.0%
CGTAACGTCCCCGTCGGTGG+CGG + chr8.2:16080983-16081002 MS.gene033038:CDS 70.0%
CTCCGTAACGTCCCCGTCGG+TGG + chr8.2:16080980-16080999 MS.gene033038:CDS 70.0%
GGCGCCTCCGGTGGAGTTGT+CGG - chr8.2:16081073-16081092 None:intergenic 70.0%
TTCCAGCCTCACCGCCGCTG+CGG + chr8.2:16081129-16081148 MS.gene033038:CDS 70.0%
TTCCGGCAACCGCCACCGAC+GGG - chr8.2:16080995-16081014 None:intergenic 70.0%
! GACAACTCCACCGGAGGCGC+CGG + chr8.2:16081072-16081091 MS.gene033038:CDS 70.0%
!! CATTCCATCGGAGGCGCCGG+AGG + chr8.2:16080758-16080777 MS.gene033038:CDS 70.0%
GGTTCCTCCGGCGCCTCCGA+TGG - chr8.2:16080765-16080784 None:intergenic 75.0%
TCCGGCAACCGCCACCGACG+GGG - chr8.2:16080994-16081013 None:intergenic 75.0%
! TCCCCGTCGGTGGCGGTTGC+CGG + chr8.2:16080990-16081009 MS.gene033038:CDS 75.0%
!! GGTGCTGGTGCTGGTGGGGG+TGG + chr8.2:16081472-16081491 MS.gene033038:CDS 75.0%
! CACCGCAGCGGCGGTGAGGC+TGG - chr8.2:16081134-16081153 None:intergenic 80.0%
! CAGCCACCGCAGCGGCGGTG+AGG - chr8.2:16081138-16081157 None:intergenic 80.0%
! CAGCCTCACCGCCGCTGCGG+TGG + chr8.2:16081132-16081151 MS.gene033038:CDS 80.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 16080743 16081711 16080743 ID=MS.gene033038
chr8.2 mRNA 16080743 16081711 16080743 ID=MS.gene033038.t1;Parent=MS.gene033038
chr8.2 exon 16080743 16081711 16080743 ID=MS.gene033038.t1.exon1;Parent=MS.gene033038.t1
chr8.2 CDS 16080743 16081711 16080743 ID=cds.MS.gene033038.t1;Parent=MS.gene033038.t1
Gene Sequence

>MS.gene033038

ATGCAGGAGATACAACATTCCATCGGAGGCGCCGGAGGAACCAGATTCTTCAGTGGTGGAGGCGGTGATCGGCGACTCAGACCCAACCAAAACAACAACAACCTGAACCAAGAAGTCATGAAATGTCCTCGCTGTGACTCCATCAACACCAAATTCTGCTACTACAATAACTACAACCTCTCTCAGCCTCGTCACTTCTGCAAAAACTGCCGACGTTACTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCCGTCGGTGGCGGTTGCCGGAAATCCAAACGCTCTAGCAAACCAAAAAAATCTTCCTCCTCAGATTCCACTGTTTTACCGACAACTCCACCGGAGGCGCCGGAGAATAAGTCTAACTCCCATTCCAGCAGTGAGAGTTCCAGCCTCACCGCCGCTGCGGTGGCTGAAACAGTTTCAGAACCAACACCACCGCCGGAGAAGAAAATCAACAAAGGTTTTGAGAATGATTCACTTGAACAAGGAACAGGTGATTGTGGTATATTCTCAGAGATCGCAACTTTCACAAGCTTGATCACTTCCTCTAACGAGACATTGCCGTTTGGTTTTGGTATCGGTAACGATAACCGTAACGGTAATGTTAACGTTAACGGGTTTAATGATGCGTCGTCGTTTCAGTGGCAAAACCAAAAGCTGATGAGCGTTACCGGCGATCAAAAACATCATGAAGAAGACGCATTGAAGTTGTTACCGGAGAATATAGGTGCTGGTGCTGGTGGGGGTGGTTCTTCTGGTTCTGGATCGTTGCTGGACCATGGTATTGATTTCTCTTTGCTGCAGAGTAAAACAAGCAACGGTGGATTTGGATCGTTGGATTGGAATGGTGACGGTGGTGCAGATCATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCATGGTTACTGGAATCACACTCAATGGTCTGATCAGGATCATTCTTCTCTCTTTCATCTTCCATGA
Protein sequence

>MS.gene033038.t1

MQEIQHSIGGAGGTRFFSGGGGDRRLRPNQNNNNLNQEVMKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKKSSSSDSTVLPTTPPEAPENKSNSHSSSESSSLTAAAVAETVSEPTPPPEKKINKGFENDSLEQGTGDCGIFSEIATFTSLITSSNETLPFGFGIGNDNRNGNVNVNGFNDASSFQWQNQKLMSVTGDQKHHEEDALKLLPENIGAGAGGGGSSGSGSLLDHGIDFSLLQSKTSNGGFGSLDWNGDGGADHQGLFDLPNTVDHGYWNHTQWSDQDHSSLFHLP