AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033131

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033131.t1 MTR_4g108370 94.318 440 1 2 1 419 1 437 0.0 832
MS.gene033131.t1 MTR_5g039600 48.317 416 133 19 18 386 7 387 2.40e-96 295
MS.gene033131.t1 MTR_2g006150 69.531 128 29 3 55 178 90 211 6.45e-49 172
MS.gene033131.t1 MTR_2g006150 69.531 128 29 3 55 178 90 211 9.77e-49 173
MS.gene033131.t1 MTR_7g028160 70.000 110 31 2 73 181 27 135 2.98e-43 153
MS.gene033131.t1 MTR_1g114380 76.190 84 15 1 86 169 27 105 4.09e-38 139
MS.gene033131.t1 MTR_8g033070 76.829 82 19 0 93 174 76 157 2.36e-37 139
MS.gene033131.t1 MTR_1g101810 52.448 143 57 3 36 178 14 145 3.67e-36 135
MS.gene033131.t1 MTR_1g038650 70.930 86 21 1 80 165 19 100 8.05e-36 132
MS.gene033131.t1 MTR_1g101810 52.448 143 57 3 36 178 44 175 9.60e-36 135
MS.gene033131.t1 MTR_1g063870 80.882 68 13 0 92 159 44 111 7.89e-34 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033131.t1 AT3G47620 49.855 345 75 15 86 369 106 413 1.76e-64 214
MS.gene033131.t1 AT1G69690 90.217 92 7 1 77 166 30 121 9.04e-50 171
MS.gene033131.t1 AT1G58100 85.882 85 12 0 94 178 57 141 5.77e-46 163
MS.gene033131.t1 AT1G72010 82.022 89 10 1 86 174 58 140 8.10e-43 154
MS.gene033131.t1 AT1G35560 85.366 82 12 0 97 178 55 136 9.35e-43 153
MS.gene033131.t1 AT2G45680 63.551 107 39 0 63 169 41 147 2.91e-40 147
MS.gene033131.t1 AT5G51910 73.333 90 24 0 85 174 45 134 7.35e-39 142
MS.gene033131.t1 AT5G51910 73.333 90 24 0 85 174 45 134 7.35e-39 142
MS.gene033131.t1 AT5G23280 68.889 90 23 1 88 177 35 119 4.08e-37 135
MS.gene033131.t1 AT3G27010 89.552 67 7 0 92 158 73 139 6.45e-37 137
MS.gene033131.t1 AT3G27010 89.552 67 7 0 92 158 73 139 6.45e-37 137
MS.gene033131.t1 AT5G08330 73.171 82 17 1 86 167 25 101 2.90e-35 130
MS.gene033131.t1 AT2G37000 80.000 60 12 0 97 156 43 102 7.62e-28 109
MS.gene033131.t1 AT5G41030 68.182 66 21 0 93 158 64 129 7.70e-27 108
MS.gene033131.t1 AT1G58100 60.000 85 10 1 94 178 57 117 2.83e-23 100
MS.gene033131.t1 AT3G45150 60.317 63 25 0 94 156 14 76 1.40e-20 88.6

Find 104 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTCACCATCAGATTTA+TGG 0.154484 8.2:-17422415 None:intergenic
GATCACCACCACTCATTATT+TGG 0.166553 8.2:-17422991 None:intergenic
GTCTTTGGTGGAGGTTCTTT+TGG 0.183028 8.2:-17422303 None:intergenic
TACTTTGGTATGACGGTCTT+TGG 0.279521 8.2:-17422318 None:intergenic
TTGTTACCAGGTCAACAATT+AGG 0.283857 8.2:+17423118 MS.gene033131:CDS
GGTGTTGGTGGTGGTGTTGA+TGG 0.302716 8.2:-17422073 None:intergenic
CTCAGATTCCAGCAAATATA+TGG 0.305043 8.2:+17422948 MS.gene033131:CDS
CGGTTTGAATTTGATGTACT+TGG 0.310628 8.2:-17422215 None:intergenic
GCGGCCGCGGCCTTCTACTT+TGG 0.320141 8.2:-17422333 None:intergenic
TTGAACATGATGCTGCTTCT+TGG 0.321672 8.2:-17422151 None:intergenic
CGTTGTTGAAGTGAGAAATT+CGG 0.325108 8.2:-17422590 None:intergenic
ATCATCATTACAACATCAAA+TGG 0.335818 8.2:+17422877 MS.gene033131:CDS
GCCACCATCCATATATTTGC+TGG 0.339031 8.2:-17422956 None:intergenic
TAGCCTGCAACATATTTGTT+AGG 0.346692 8.2:-17422703 None:intergenic
CATGTCGATCATCGTGTTCA+TGG 0.347036 8.2:-17423333 None:intergenic
TATTTGTTAGGTTATTTGAT+TGG 0.348643 8.2:-17422691 None:intergenic
GTTATAGCTGCCACCGGAAC+TGG 0.348983 8.2:+17422470 MS.gene033131:CDS
GCTGGTGGTGGTGATGGTGG+TGG 0.350272 8.2:-17422049 None:intergenic
TGCTGCTGGTACTAGTTGAT+TGG 0.354245 8.2:-17422240 None:intergenic
GTTGTTGAAGTGAGAAATTC+GGG 0.371211 8.2:-17422589 None:intergenic
CTTCTTTCTTCTCAAGAAGT+TGG 0.372790 8.2:-17422124 None:intergenic
TAACCTAACAAATATGTTGC+AGG 0.377215 8.2:+17422700 MS.gene033131:CDS
GCATTCGGATGCGGCGGCCG+CGG 0.380835 8.2:-17422346 None:intergenic
GATGGTGCTGGTGGTGGTGA+TGG 0.387296 8.2:-17422055 None:intergenic
GGTGCTGGTGGTGGTGATGG+TGG 0.390203 8.2:-17422052 None:intergenic
GGAATCTGAGTATGACTTGC+TGG 0.390776 8.2:-17422935 None:intergenic
GGTGTTGATGGTGCTGGTGG+TGG 0.398352 8.2:-17422061 None:intergenic
CGGCCGCCGCATCCGAATGC+CGG 0.398608 8.2:+17422349 MS.gene033131:CDS
ATTGTGATCCACTTGGTTGA+TGG 0.401491 8.2:-17423288 None:intergenic
CAACCTATGGCTTTGTTACC+AGG 0.405222 8.2:+17423106 MS.gene033131:CDS
GTCGTTGTTGTTGTTGGTGT+TGG 0.413241 8.2:-17422088 None:intergenic
TGAGTGGTGGTGATCCTATA+TGG 0.413258 8.2:+17422999 MS.gene033131:CDS
GGTGGTGGTGTTGATGGTGC+TGG 0.414098 8.2:-17422067 None:intergenic
GTTCTGTTGGTGAGATTGCT+AGG 0.414341 8.2:-17422193 None:intergenic
AGCAGGTATAGTTCCAGTTC+CGG 0.418557 8.2:-17422483 None:intergenic
GACCGTCATACCAAAGTAGA+AGG 0.430564 8.2:+17422323 MS.gene033131:CDS
GAGGTTGTTGGTGTTGCTGC+TGG 0.432242 8.2:-17422254 None:intergenic
TCTTCTCAAGAAGTTGGAAT+GGG 0.441785 8.2:-17422118 None:intergenic
CAGCACAAAGTGCCGGCATT+CGG 0.445504 8.2:-17422361 None:intergenic
GAAGGAGATAAACCAATTCC+AGG 0.446291 8.2:-17422626 None:intergenic
TGATCGGAAACCGGACGATA+AGG 0.451545 8.2:-17423244 None:intergenic
TTGAGAGATGTGAAGTTAGC+AGG 0.457458 8.2:-17422500 None:intergenic
TTTCAGCTTACACGCGAACT+TGG 0.460579 8.2:+17422392 MS.gene033131:CDS
GGACATTTGAGTATGCTTGC+TGG 0.474162 8.2:+17423214 MS.gene033131:intron
AGTGCTGCTGCTTTGTATAG+AGG 0.476785 8.2:+17423043 MS.gene033131:CDS
TTCTTCTCAAGAAGTTGGAA+TGG 0.477818 8.2:-17422119 None:intergenic
GTTGTTGTTGGTGTTGGTGG+TGG 0.478497 8.2:-17422082 None:intergenic
GGTGGTGTTGATGGTGCTGG+TGG 0.480384 8.2:-17422064 None:intergenic
TTTGATGTACTTGGTTCTGT+TGG 0.480791 8.2:-17422206 None:intergenic
AATATCTCACTTCGTAGCTC+AGG 0.489424 8.2:+17422521 MS.gene033131:CDS
TTGTTGAAGAAGCCATTCAA+TGG 0.490318 8.2:-17422435 None:intergenic
TTGGCAGGGTCAGAGGTTGT+TGG 0.498054 8.2:-17422266 None:intergenic
GAGATTGCTAGGGATGGATA+TGG 0.498465 8.2:-17422182 None:intergenic
GGTATGACGGTCTTTGGTGG+AGG 0.507929 8.2:-17422312 None:intergenic
GTTGTTGTTGTTGGTGTTGG+TGG 0.510292 8.2:-17422085 None:intergenic
TCATCATTACAACATCAAAT+GGG 0.514168 8.2:+17422878 MS.gene033131:CDS
GGTAACAAAGCCATAGGTTG+TGG 0.514532 8.2:-17423103 None:intergenic
TTTGGTATGACGGTCTTTGG+TGG 0.516158 8.2:-17422315 None:intergenic
CTGGTACTAGTTGATTGGAT+CGG 0.518820 8.2:-17422235 None:intergenic
TGGTCTTAGTCCTTATCGTC+CGG 0.520077 8.2:+17423234 MS.gene033131:CDS
TAAGAAGATCTTAGCTGAGA+TGG 0.524502 8.2:-17422560 None:intergenic
ACTATCCATGCGATCATGGA+TGG 0.527493 8.2:+17422014 None:intergenic
AAAGTGCCGGCATTCGGATG+CGG 0.528787 8.2:-17422355 None:intergenic
TTGCTGTTGTTGATGATGAT+CGG 0.538011 8.2:-17423260 None:intergenic
GGCCTTCTACTTTGGTATGA+CGG 0.539347 8.2:-17422325 None:intergenic
AGAGGAGCAGTTTCAACTAG+TGG 0.546067 8.2:+17423061 MS.gene033131:CDS
TTCTGTTGGTGAGATTGCTA+GGG 0.546955 8.2:-17422192 None:intergenic
CCGGTGGCAGCTATAACAGC+TGG 0.556756 8.2:-17422464 None:intergenic
TCCAACGTGGTTGATGAAGA+AGG 0.558834 8.2:-17422776 None:intergenic
TATCTGATGCAATCAAGTGC+AGG 0.561368 8.2:+17422905 MS.gene033131:CDS
AAAAGAAGAACTAGCAGTGG+TGG 0.562125 8.2:+17422839 MS.gene033131:CDS
AACAAGTGGAGAAGAATCCA+TGG 0.562177 8.2:+17422808 MS.gene033131:CDS
ACTCTAGCAGCACAAAGTGC+CGG 0.564904 8.2:-17422368 None:intergenic
ACCGACGGGAAAGTCCATAT+AGG 0.565288 8.2:-17423013 None:intergenic
TGTTGATGATGATCGGAAAC+CGG 0.572274 8.2:-17423253 None:intergenic
CTGATGGTGAAACCATTGAA+TGG 0.573344 8.2:+17422423 MS.gene033131:CDS
TGACCTGGTAACAAAGCCAT+AGG 0.574635 8.2:-17423109 None:intergenic
TTGTTGCTGTTGTTATCAGA+AGG 0.580085 8.2:-17422644 None:intergenic
GTGCCGGCATTCGGATGCGG+CGG 0.596373 8.2:-17422352 None:intergenic
TTGGATTTATCTGAAACAAG+TGG 0.596762 8.2:+17422794 MS.gene033131:CDS
GCTAAACAAGAGGTTAGAGA+TGG 0.599591 8.2:+17422722 MS.gene033131:CDS
GTTGGTGAGATTGCTAGGGA+TGG 0.600696 8.2:-17422188 None:intergenic
GAATTACCTAATTGTTGACC+TGG 0.601536 8.2:-17423124 None:intergenic
TCCTATATGGACTTTCCCGT+CGG 0.606228 8.2:+17423012 MS.gene033131:CDS
TCTAATAACCAAATAATGAG+TGG 0.608534 8.2:+17422983 MS.gene033131:CDS
GAACTTGGCCATAAATCTGA+TGG 0.613525 8.2:+17422407 MS.gene033131:CDS
CAGCACTATTATTCACCGAC+GGG 0.616314 8.2:-17423027 None:intergenic
TCCTTCTTCATCAACCACGT+TGG 0.619503 8.2:+17422775 MS.gene033131:CDS
TATGTTGCAGGCTAAACAAG+AGG 0.623052 8.2:+17422712 MS.gene033131:CDS
CCAGCTGTTATAGCTGCCAC+CGG 0.623678 8.2:+17422464 MS.gene033131:CDS
CATACCAAAGTAGAAGGCCG+CGG 0.625233 8.2:+17422329 MS.gene033131:CDS
GATTCCAGCAAATATATGGA+TGG 0.625794 8.2:+17422952 MS.gene033131:CDS
TAGCTGAGATGGAACAGACA+TGG 0.633215 8.2:-17422549 None:intergenic
AATAACCAAATAATGAGTGG+TGG 0.633743 8.2:+17422986 MS.gene033131:CDS
GCAGCACTATTATTCACCGA+CGG 0.636084 8.2:-17423028 None:intergenic
CAACAACACCATCAACCAAG+TGG 0.638624 8.2:+17423280 MS.gene033131:CDS
TCCAGCAAATATATGGATGG+TGG 0.643480 8.2:+17422955 MS.gene033131:CDS
AGGTATAGTTCCAGTTCCGG+TGG 0.651482 8.2:-17422480 None:intergenic
TGATGTGATTGTGATCCACT+TGG 0.661439 8.2:-17423295 None:intergenic
ATCCATGCGATCATGGATGG+AGG 0.662486 8.2:+17422017 None:intergenic
ACAAGTGGAGAAGAATCCAT+GGG 0.671280 8.2:+17422809 MS.gene033131:CDS
CAATCACATCATCATCGCAG+TGG 0.700966 8.2:+17423307 MS.gene033131:CDS
AGTGGAGAAGAATCCATGGG+AGG 0.724803 8.2:+17422812 MS.gene033131:CDS
TGTTTCAGATAAATCCAACG+TGG 0.753094 8.2:-17422789 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATATGAATATGAATGA+AGG + chr8.2:17423193-17423212 MS.gene033131:intron 20.0%
!!! TATTTGTTAGGTTATTTGAT+TGG - chr8.2:17422694-17422713 None:intergenic 20.0%
! ATCATCATTACAACATCAAA+TGG + chr8.2:17422877-17422896 MS.gene033131:CDS 25.0%
! TCATCATTACAACATCAAAT+GGG + chr8.2:17422878-17422897 MS.gene033131:CDS 25.0%
! TCTAATAACCAAATAATGAG+TGG + chr8.2:17422983-17423002 MS.gene033131:CDS 25.0%
AATAACCAAATAATGAGTGG+TGG + chr8.2:17422986-17423005 MS.gene033131:CDS 30.0%
CAACAATTAGGTAATTCTTC+TGG + chr8.2:17423130-17423149 MS.gene033131:intron 30.0%
TAACCTAACAAATATGTTGC+AGG + chr8.2:17422700-17422719 MS.gene033131:CDS 30.0%
! TATGAATTTTCCACAACCTA+TGG + chr8.2:17423093-17423112 MS.gene033131:CDS 30.0%
! TTGGATTTATCTGAAACAAG+TGG + chr8.2:17422794-17422813 MS.gene033131:CDS 30.0%
!! AATTTTGTCGTTGTTGTTGT+TGG - chr8.2:17422097-17422116 None:intergenic 30.0%
AGAAAAAGAAGAACTAGCAG+TGG + chr8.2:17422836-17422855 MS.gene033131:CDS 35.0%
CAATTAGGTAATTCTTCTGG+TGG + chr8.2:17423133-17423152 MS.gene033131:intron 35.0%
CGGTTTGAATTTGATGTACT+TGG - chr8.2:17422218-17422237 None:intergenic 35.0%
CGTTGTTGAAGTGAGAAATT+CGG - chr8.2:17422593-17422612 None:intergenic 35.0%
CTCAGATTCCAGCAAATATA+TGG + chr8.2:17422948-17422967 MS.gene033131:CDS 35.0%
CTTCTTTCTTCTCAAGAAGT+TGG - chr8.2:17422127-17422146 None:intergenic 35.0%
GAATTACCTAATTGTTGACC+TGG - chr8.2:17423127-17423146 None:intergenic 35.0%
GATTCCAGCAAATATATGGA+TGG + chr8.2:17422952-17422971 MS.gene033131:CDS 35.0%
GTTGTTGAAGTGAGAAATTC+GGG - chr8.2:17422592-17422611 None:intergenic 35.0%
TAAGAAGATCTTAGCTGAGA+TGG - chr8.2:17422563-17422582 None:intergenic 35.0%
TAGCCTGCAACATATTTGTT+AGG - chr8.2:17422706-17422725 None:intergenic 35.0%
TCTTCTCAAGAAGTTGGAAT+GGG - chr8.2:17422121-17422140 None:intergenic 35.0%
TGGTTTCACCATCAGATTTA+TGG - chr8.2:17422418-17422437 None:intergenic 35.0%
TGTTTCAGATAAATCCAACG+TGG - chr8.2:17422792-17422811 None:intergenic 35.0%
TTCTTCTCAAGAAGTTGGAA+TGG - chr8.2:17422122-17422141 None:intergenic 35.0%
TTGTTACCAGGTCAACAATT+AGG + chr8.2:17423118-17423137 MS.gene033131:CDS 35.0%
TTGTTGAAGAAGCCATTCAA+TGG - chr8.2:17422438-17422457 None:intergenic 35.0%
! AGAACTCTTTTTCCTGGAAT+TGG + chr8.2:17422614-17422633 MS.gene033131:CDS 35.0%
! TTGTTGCTGTTGTTATCAGA+AGG - chr8.2:17422647-17422666 None:intergenic 35.0%
!! TTGCTGTTGTTGATGATGAT+CGG - chr8.2:17423263-17423282 None:intergenic 35.0%
!! TTTGATGTACTTGGTTCTGT+TGG - chr8.2:17422209-17422228 None:intergenic 35.0%
AAAAGAAGAACTAGCAGTGG+TGG + chr8.2:17422839-17422858 MS.gene033131:CDS 40.0%
AACAAGTGGAGAAGAATCCA+TGG + chr8.2:17422808-17422827 MS.gene033131:CDS 40.0%
AATATCTCACTTCGTAGCTC+AGG + chr8.2:17422521-17422540 MS.gene033131:CDS 40.0%
ACAAGTGGAGAAGAATCCAT+GGG + chr8.2:17422809-17422828 MS.gene033131:CDS 40.0%
ATTGTGATCCACTTGGTTGA+TGG - chr8.2:17423291-17423310 None:intergenic 40.0%
CTGGTACTAGTTGATTGGAT+CGG - chr8.2:17422238-17422257 None:intergenic 40.0%
GAACTTGGCCATAAATCTGA+TGG + chr8.2:17422407-17422426 MS.gene033131:CDS 40.0%
GAAGGAGATAAACCAATTCC+AGG - chr8.2:17422629-17422648 None:intergenic 40.0%
GATCACCACCACTCATTATT+TGG - chr8.2:17422994-17423013 None:intergenic 40.0%
GCTAAACAAGAGGTTAGAGA+TGG + chr8.2:17422722-17422741 MS.gene033131:CDS 40.0%
TACTTTGGTATGACGGTCTT+TGG - chr8.2:17422321-17422340 None:intergenic 40.0%
TATCTGATGCAATCAAGTGC+AGG + chr8.2:17422905-17422924 MS.gene033131:CDS 40.0%
TATGTTGCAGGCTAAACAAG+AGG + chr8.2:17422712-17422731 MS.gene033131:CDS 40.0%
TCCAGCAAATATATGGATGG+TGG + chr8.2:17422955-17422974 MS.gene033131:CDS 40.0%
TGATGTGATTGTGATCCACT+TGG - chr8.2:17423298-17423317 None:intergenic 40.0%
TTAGGTAATTCTTCTGGTGG+AGG + chr8.2:17423136-17423155 MS.gene033131:intron 40.0%
TTGAGAGATGTGAAGTTAGC+AGG - chr8.2:17422503-17422522 None:intergenic 40.0%
! CAACGAAGAACTCTTTTTCC+TGG + chr8.2:17422608-17422627 MS.gene033131:CDS 40.0%
! CTGATGGTGAAACCATTGAA+TGG + chr8.2:17422423-17422442 MS.gene033131:CDS 40.0%
! TCTTCTTTTTCTTCCTCCCA+TGG - chr8.2:17422828-17422847 None:intergenic 40.0%
! TCTTTGGTGGAGGTTCTTTT+GGG - chr8.2:17422305-17422324 None:intergenic 40.0%
! TTCTGTTGGTGAGATTGCTA+GGG - chr8.2:17422195-17422214 None:intergenic 40.0%
! TTGAACATGATGCTGCTTCT+TGG - chr8.2:17422154-17422173 None:intergenic 40.0%
!! TGTTGATGATGATCGGAAAC+CGG - chr8.2:17423256-17423275 None:intergenic 40.0%
!!! TTTGGGAGGAGGTTTTTTGT+TGG - chr8.2:17422288-17422307 None:intergenic 40.0%
AGAGGAGCAGTTTCAACTAG+TGG + chr8.2:17423061-17423080 MS.gene033131:CDS 45.0%
AGCAGGTATAGTTCCAGTTC+CGG - chr8.2:17422486-17422505 None:intergenic 45.0%
CAACAACACCATCAACCAAG+TGG + chr8.2:17423280-17423299 MS.gene033131:CDS 45.0%
CAATCACATCATCATCGCAG+TGG + chr8.2:17423307-17423326 MS.gene033131:CDS 45.0%
CAGCACTATTATTCACCGAC+GGG - chr8.2:17423030-17423049 None:intergenic 45.0%
CATGTCGATCATCGTGTTCA+TGG - chr8.2:17423336-17423355 None:intergenic 45.0%
GACCGTCATACCAAAGTAGA+AGG + chr8.2:17422323-17422342 MS.gene033131:CDS 45.0%
GAGATTGCTAGGGATGGATA+TGG - chr8.2:17422185-17422204 None:intergenic 45.0%
GCAGCACTATTATTCACCGA+CGG - chr8.2:17423031-17423050 None:intergenic 45.0%
GCCACCATCCATATATTTGC+TGG - chr8.2:17422959-17422978 None:intergenic 45.0%
GGACATTTGAGTATGCTTGC+TGG + chr8.2:17423214-17423233 MS.gene033131:intron 45.0%
GGCCTTCTACTTTGGTATGA+CGG - chr8.2:17422328-17422347 None:intergenic 45.0%
GGTAACAAAGCCATAGGTTG+TGG - chr8.2:17423106-17423125 None:intergenic 45.0%
TAGCTGAGATGGAACAGACA+TGG - chr8.2:17422552-17422571 None:intergenic 45.0%
TCCTATATGGACTTTCCCGT+CGG + chr8.2:17423012-17423031 MS.gene033131:CDS 45.0%
TCCTTCTTCATCAACCACGT+TGG + chr8.2:17422775-17422794 MS.gene033131:CDS 45.0%
TGACCTGGTAACAAAGCCAT+AGG - chr8.2:17423112-17423131 None:intergenic 45.0%
TGCTGCTGGTACTAGTTGAT+TGG - chr8.2:17422243-17422262 None:intergenic 45.0%
TTTCAGCTTACACGCGAACT+TGG + chr8.2:17422392-17422411 MS.gene033131:CDS 45.0%
TTTGGTATGACGGTCTTTGG+TGG - chr8.2:17422318-17422337 None:intergenic 45.0%
! GGAATCTGAGTATGACTTGC+TGG - chr8.2:17422938-17422957 None:intergenic 45.0%
! GTCGTTGTTGTTGTTGGTGT+TGG - chr8.2:17422091-17422110 None:intergenic 45.0%
! GTCTTTGGTGGAGGTTCTTT+TGG - chr8.2:17422306-17422325 None:intergenic 45.0%
! GTTCTGTTGGTGAGATTGCT+AGG - chr8.2:17422196-17422215 None:intergenic 45.0%
! TGAGTGGTGGTGATCCTATA+TGG + chr8.2:17422999-17423018 MS.gene033131:CDS 45.0%
! TGGTCTTAGTCCTTATCGTC+CGG + chr8.2:17423234-17423253 MS.gene033131:CDS 45.0%
!! AGTGCTGCTGCTTTGTATAG+AGG + chr8.2:17423043-17423062 MS.gene033131:CDS 45.0%
!! CAACCTATGGCTTTGTTACC+AGG + chr8.2:17423106-17423125 MS.gene033131:CDS 45.0%
!! GTTGTTGTTGTTGGTGTTGG+TGG - chr8.2:17422088-17422107 None:intergenic 45.0%
!! TCCAACGTGGTTGATGAAGA+AGG - chr8.2:17422779-17422798 None:intergenic 45.0%
!!! GAGGAGGTTTTTTGTTGGCA+GGG - chr8.2:17422283-17422302 None:intergenic 45.0%
!!! TTTTTTGTTGGCAGGGTCAG+AGG - chr8.2:17422276-17422295 None:intergenic 45.0%
AATTCTTCTGGTGGAGGTGG+TGG + chr8.2:17423142-17423161 MS.gene033131:intron 50.0%
ACCGACGGGAAAGTCCATAT+AGG - chr8.2:17423016-17423035 None:intergenic 50.0%
ACTCTAGCAGCACAAAGTGC+CGG - chr8.2:17422371-17422390 None:intergenic 50.0%
AGGTATAGTTCCAGTTCCGG+TGG - chr8.2:17422483-17422502 None:intergenic 50.0%
AGTGGAGAAGAATCCATGGG+AGG + chr8.2:17422812-17422831 MS.gene033131:CDS 50.0%
CATACCAAAGTAGAAGGCCG+CGG + chr8.2:17422329-17422348 MS.gene033131:CDS 50.0%
GGTAATTCTTCTGGTGGAGG+TGG + chr8.2:17423139-17423158 MS.gene033131:intron 50.0%
TGATCGGAAACCGGACGATA+AGG - chr8.2:17423247-17423266 None:intergenic 50.0%
! GTTGGTGAGATTGCTAGGGA+TGG - chr8.2:17422191-17422210 None:intergenic 50.0%
! TTGGTGGAGGTTCTTTTGGG+AGG - chr8.2:17422302-17422321 None:intergenic 50.0%
!! GTTGTTGTTGGTGTTGGTGG+TGG - chr8.2:17422085-17422104 None:intergenic 50.0%
!!! GGAGGAGGTTTTTTGTTGGC+AGG - chr8.2:17422284-17422303 None:intergenic 50.0%
CCAGCTGTTATAGCTGCCAC+CGG + chr8.2:17422464-17422483 MS.gene033131:CDS 55.0%
GGTATGACGGTCTTTGGTGG+AGG - chr8.2:17422315-17422334 None:intergenic 55.0%
GTTATAGCTGCCACCGGAAC+TGG + chr8.2:17422470-17422489 MS.gene033131:CDS 55.0%
TTGGCAGGGTCAGAGGTTGT+TGG - chr8.2:17422269-17422288 None:intergenic 55.0%
!! AAAGTGCCGGCATTCGGATG+CGG - chr8.2:17422358-17422377 None:intergenic 55.0%
!! CAGCACAAAGTGCCGGCATT+CGG - chr8.2:17422364-17422383 None:intergenic 55.0%
!! GAGGTTGTTGGTGTTGCTGC+TGG - chr8.2:17422257-17422276 None:intergenic 55.0%
!! GGTGTTGGTGGTGGTGTTGA+TGG - chr8.2:17422076-17422095 None:intergenic 55.0%
!! GTGGAGGTTCTTTTGGGAGG+AGG - chr8.2:17422299-17422318 None:intergenic 55.0%
CCGGTGGCAGCTATAACAGC+TGG - chr8.2:17422467-17422486 None:intergenic 60.0%
! TCTTCTGGTGGAGGTGGTGG+TGG + chr8.2:17423145-17423164 MS.gene033131:intron 60.0%
!! GATGGTGCTGGTGGTGGTGA+TGG - chr8.2:17422058-17422077 None:intergenic 60.0%
!! GGTGGTGGTGTTGATGGTGC+TGG - chr8.2:17422070-17422089 None:intergenic 60.0%
!! GGTGGTGTTGATGGTGCTGG+TGG - chr8.2:17422067-17422086 None:intergenic 60.0%
!! GGTGTTGATGGTGCTGGTGG+TGG - chr8.2:17422064-17422083 None:intergenic 60.0%
!! GCTGGTGGTGGTGATGGTGG+TGG - chr8.2:17422052-17422071 None:intergenic 65.0%
!! GGTGCTGGTGGTGGTGATGG+TGG - chr8.2:17422055-17422074 None:intergenic 65.0%
!! GTGGTGGTGGTGGAGGAGGT+GGG + chr8.2:17423161-17423180 MS.gene033131:intron 65.0%
!! TCTGGTGGAGGTGGTGGTGG+TGG + chr8.2:17423148-17423167 MS.gene033131:intron 65.0%
GCGGCCGCGGCCTTCTACTT+TGG - chr8.2:17422336-17422355 None:intergenic 70.0%
! GTGCCGGCATTCGGATGCGG+CGG - chr8.2:17422355-17422374 None:intergenic 70.0%
!! GGAGGTGGTGGTGGTGGTGG+AGG + chr8.2:17423154-17423173 MS.gene033131:intron 70.0%
!! GGTGGAGGTGGTGGTGGTGG+TGG + chr8.2:17423151-17423170 MS.gene033131:intron 70.0%
!! GGTGGTGGTGGTGGAGGAGG+TGG + chr8.2:17423160-17423179 MS.gene033131:intron 70.0%
!! GGTGGTGGTGGTGGTGGAGG+AGG + chr8.2:17423157-17423176 MS.gene033131:intron 70.0%
CGGCCGCCGCATCCGAATGC+CGG + chr8.2:17422349-17422368 MS.gene033131:CDS 75.0%
GCATTCGGATGCGGCGGCCG+CGG - chr8.2:17422349-17422368 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 17422029 17423363 17422029 ID=MS.gene033131
chr8.2 mRNA 17422029 17423363 17422029 ID=MS.gene033131.t1;Parent=MS.gene033131
chr8.2 exon 17422029 17423139 17422029 ID=MS.gene033131.t1.exon1;Parent=MS.gene033131.t1
chr8.2 CDS 17422029 17423139 17422029 ID=cds.MS.gene033131.t1;Parent=MS.gene033131.t1
chr8.2 exon 17423215 17423363 17423215 ID=MS.gene033131.t1.exon2;Parent=MS.gene033131.t1
chr8.2 CDS 17423215 17423363 17423215 ID=cds.MS.gene033131.t1;Parent=MS.gene033131.t1
Gene Sequence

>MS.gene033131

ATGGATGGAGGAGATGATCTCCACCACCATCACCACCACCAGCACCATCAACACCACCACCAACACCAACAACAACAACGACAAAATTTCCCATTCCAACTTCTTGAGAAGAAAGAAGATAACCAAGAAGCAGCATCATGTTCAACTTCTTCACCATATCCATCCCTAGCAATCTCACCAACAGAACCAAGTACATCAAATTCAAACCGATCCAATCAACTAGTACCAGCAGCAACACCAACAACCTCTGACCCTGCCAACAAAAAACCTCCTCCCAAAAGAACCTCCACCAAAGACCGTCATACCAAAGTAGAAGGCCGCGGCCGCCGCATCCGAATGCCGGCACTTTGTGCTGCTAGAGTTTTTCAGCTTACACGCGAACTTGGCCATAAATCTGATGGTGAAACCATTGAATGGCTTCTTCAACAAGCTGAACCAGCTGTTATAGCTGCCACCGGAACTGGAACTATACCTGCTAACTTCACATCTCTCAATATCTCACTTCGTAGCTCAGGTTCATCCATGTCTGTTCCATCTCAGCTAAGATCTTCTTACTTCAACCCGAATTTCTCACTTCAACAACGAAGAACTCTTTTTCCTGGAATTGGTTTATCTCCTTCTGATAACAACAGCAACAACAACACTTCAATGCTTTTGAATTTCCAATCAAATAACCTAACAAATATGTTGCAGGCTAAACAAGAGGTTAGAGATGGAAACACAAACTCAAACGCAAACGCAAACGCTCCTTCTTCATCAACCACGTTGGATTTATCTGAAACAAGTGGAGAAGAATCCATGGGAGGAAGAAAAAGAAGAACTAGCAGTGGTGGTAGTGAGCAAGATTTATCATCATTACAACATCAAATGGGAAGTTATCTGATGCAATCAAGTGCAGGTTCAATTCCAGCAAGTCATACTCAGATTCCAGCAAATATATGGATGGTGGCAAATTCTAATAACCAAATAATGAGTGGTGGTGATCCTATATGGACTTTCCCGTCGGTGAATAATAGTGCTGCTGCTTTGTATAGAGGAGCAGTTTCAACTAGTGGTTTACATTTTATGAATTTTCCACAACCTATGGCTTTGTTACCAGGTCAACAATTAGGTAATTCTTCTGGTGGAGGTGGTGGTGGTGGTGGAGGAGGTGGGAATATCAATATGAATATGAATATGAATGAAGGACATTTGAGTATGCTTGCTGGTCTTAGTCCTTATCGTCCGGTTTCCGATCATCATCAACAACAGCAACAACACCATCAACCAAGTGGATCACAATCACATCATCATCGCAGTGGTAGCCATGAACACGATGATCGACATGATAATTAA
Protein sequence

>MS.gene033131.t1

MDGGDDLHHHHHHQHHQHHHQHQQQQRQNFPFQLLEKKEDNQEAASCSTSSPYPSLAISPTEPSTSNSNRSNQLVPAATPTTSDPANKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIGLSPSDNNSNNNTSMLLNFQSNNLTNMLQAKQEVRDGNTNSNANANAPSSSTTLDLSETSGEESMGGRKRRTSSGGSEQDLSSLQHQMGSYLMQSSAGSIPASHTQIPANIWMVANSNNQIMSGGDPIWTFPSVNNSAAALYRGAVSTSGLHFMNFPQPMALLPGQQLGHLSMLAGLSPYRPVSDHHQQQQQHHQPSGSQSHHHRSGSHEHDDRHDN