Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033166.t1 | XP_003608986.1 | 92.2 | 282 | 18 | 2 | 1 | 278 | 56 | 337 | 7.30E-114 | 420.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033166.t1 | Q940J1 | 67.8 | 90 | 26 | 1 | 15 | 101 | 31 | 120 | 2.7e-24 | 114.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033166.t1 | B7FK22 | 92.2 | 282 | 18 | 2 | 1 | 278 | 56 | 337 | 5.2e-114 | 420.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene033166.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033166.t1 | MTR_4g107650 | 93.972 | 282 | 13 | 2 | 1 | 278 | 56 | 337 | 0.0 | 516 |
MS.gene033166.t1 | MTR_5g038280 | 48.264 | 288 | 129 | 8 | 1 | 276 | 45 | 324 | 8.86e-72 | 224 |
MS.gene033166.t1 | MTR_8g469430 | 43.775 | 249 | 89 | 7 | 35 | 278 | 84 | 286 | 1.35e-49 | 165 |
MS.gene033166.t1 | MTR_6g007647 | 48.108 | 185 | 71 | 3 | 39 | 220 | 32 | 194 | 2.45e-45 | 153 |
MS.gene033166.t1 | MTR_6g007647 | 48.108 | 185 | 71 | 3 | 39 | 220 | 66 | 228 | 7.16e-45 | 153 |
MS.gene033166.t1 | MTR_5g039000 | 53.846 | 143 | 56 | 3 | 11 | 144 | 45 | 186 | 1.90e-38 | 136 |
MS.gene033166.t1 | MTR_8g468210 | 54.815 | 135 | 53 | 3 | 18 | 144 | 52 | 186 | 2.96e-38 | 136 |
MS.gene033166.t1 | MTR_3g086790 | 57.895 | 114 | 48 | 0 | 28 | 141 | 48 | 161 | 2.15e-36 | 131 |
MS.gene033166.t1 | MTR_3g080100 | 62.857 | 105 | 39 | 0 | 39 | 143 | 19 | 123 | 5.09e-36 | 128 |
MS.gene033166.t1 | MTR_3g080100 | 62.857 | 105 | 39 | 0 | 39 | 143 | 58 | 162 | 8.57e-36 | 129 |
MS.gene033166.t1 | MTR_6g011610 | 52.846 | 123 | 51 | 1 | 34 | 149 | 90 | 212 | 1.58e-35 | 129 |
MS.gene033166.t1 | MTR_6g011610 | 52.846 | 123 | 51 | 1 | 34 | 149 | 71 | 193 | 1.69e-35 | 128 |
MS.gene033166.t1 | MTR_8g089895 | 60.784 | 102 | 40 | 0 | 39 | 140 | 53 | 154 | 3.60e-35 | 129 |
MS.gene033166.t1 | MTR_7g010020 | 43.684 | 190 | 93 | 6 | 26 | 202 | 64 | 252 | 1.82e-32 | 120 |
MS.gene033166.t1 | MTR_7g103340 | 48.148 | 135 | 50 | 4 | 39 | 173 | 62 | 176 | 5.74e-30 | 113 |
MS.gene033166.t1 | MTR_1g061660 | 53.982 | 113 | 42 | 3 | 29 | 141 | 49 | 151 | 4.87e-29 | 110 |
MS.gene033166.t1 | MTR_3g092150 | 55.789 | 95 | 42 | 0 | 42 | 136 | 40 | 134 | 1.40e-28 | 109 |
MS.gene033166.t1 | MTR_8g026960 | 47.778 | 90 | 47 | 0 | 47 | 136 | 41 | 130 | 1.26e-24 | 99.4 |
MS.gene033166.t1 | MTR_5g019680 | 45.872 | 109 | 52 | 1 | 40 | 148 | 53 | 154 | 9.45e-22 | 90.9 |
MS.gene033166.t1 | MTR_5g019650 | 49.091 | 110 | 54 | 2 | 40 | 148 | 53 | 161 | 2.13e-21 | 90.1 |
MS.gene033166.t1 | MTR_4g100550 | 50.926 | 108 | 44 | 2 | 25 | 132 | 107 | 205 | 8.35e-21 | 89.7 |
MS.gene033166.t1 | MTR_5g013010 | 44.275 | 131 | 54 | 3 | 2 | 132 | 110 | 221 | 1.14e-18 | 84.3 |
MS.gene033166.t1 | MTR_1g054285 | 46.341 | 123 | 55 | 3 | 14 | 132 | 124 | 239 | 1.21e-18 | 84.0 |
MS.gene033166.t1 | MTR_2g061030 | 50.000 | 90 | 45 | 0 | 38 | 127 | 198 | 287 | 4.99e-18 | 82.8 |
MS.gene033166.t1 | MTR_7g093430 | 47.115 | 104 | 53 | 1 | 24 | 127 | 146 | 247 | 5.85e-18 | 82.0 |
MS.gene033166.t1 | MTR_8g006705 | 51.613 | 93 | 38 | 2 | 40 | 132 | 146 | 231 | 2.55e-17 | 80.5 |
MS.gene033166.t1 | MTR_4g097600 | 46.154 | 104 | 49 | 1 | 29 | 132 | 116 | 212 | 3.13e-17 | 79.7 |
MS.gene033166.t1 | MTR_1g017090 | 42.727 | 110 | 52 | 1 | 18 | 127 | 119 | 217 | 3.17e-16 | 77.0 |
MS.gene033166.t1 | MTR_5g014890 | 44.792 | 96 | 53 | 0 | 32 | 127 | 115 | 210 | 9.88e-16 | 75.5 |
MS.gene033166.t1 | MTR_3g103590 | 48.611 | 72 | 37 | 0 | 40 | 111 | 145 | 216 | 2.32e-14 | 72.0 |
MS.gene033166.t1 | MTR_4g084750 | 45.161 | 93 | 44 | 1 | 40 | 132 | 65 | 150 | 2.86e-14 | 70.1 |
MS.gene033166.t1 | MTR_4g126900 | 44.444 | 90 | 43 | 1 | 43 | 132 | 91 | 173 | 5.44e-14 | 69.7 |
MS.gene033166.t1 | MTR_5g013010 | 45.556 | 90 | 37 | 2 | 2 | 91 | 110 | 187 | 9.22e-14 | 68.9 |
MS.gene033166.t1 | MTR_2g038625 | 40.909 | 88 | 52 | 0 | 40 | 127 | 82 | 169 | 1.52e-11 | 62.8 |
MS.gene033166.t1 | MTR_2g038580 | 40.909 | 88 | 52 | 0 | 40 | 127 | 82 | 169 | 1.52e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033166.t1 | AT3G01470 | 50.282 | 177 | 63 | 4 | 39 | 212 | 67 | 221 | 2.47e-44 | 151 |
MS.gene033166.t1 | AT4G40060 | 42.308 | 234 | 115 | 7 | 15 | 245 | 31 | 247 | 1.55e-40 | 142 |
MS.gene033166.t1 | AT3G01220 | 58.621 | 116 | 44 | 1 | 38 | 153 | 85 | 196 | 9.71e-37 | 132 |
MS.gene033166.t1 | AT2G22430 | 63.636 | 99 | 36 | 0 | 38 | 136 | 60 | 158 | 1.22e-36 | 132 |
MS.gene033166.t1 | AT5G15150 | 65.263 | 95 | 33 | 0 | 38 | 132 | 113 | 207 | 1.81e-36 | 132 |
MS.gene033166.t1 | AT1G69780 | 54.918 | 122 | 50 | 1 | 28 | 144 | 73 | 194 | 5.88e-36 | 130 |
MS.gene033166.t1 | AT5G65310 | 62.626 | 99 | 37 | 0 | 38 | 136 | 52 | 150 | 8.16e-36 | 130 |
MS.gene033166.t1 | AT5G65310 | 62.626 | 99 | 37 | 0 | 38 | 136 | 70 | 168 | 1.00e-35 | 130 |
MS.gene033166.t1 | AT1G26960 | 48.872 | 133 | 67 | 1 | 4 | 135 | 34 | 166 | 1.09e-31 | 118 |
MS.gene033166.t1 | AT1G27045 | 47.445 | 137 | 65 | 1 | 16 | 145 | 37 | 173 | 4.02e-31 | 115 |
MS.gene033166.t1 | AT1G27045 | 53.846 | 117 | 53 | 1 | 28 | 143 | 4 | 120 | 1.80e-30 | 112 |
MS.gene033166.t1 | AT1G27045 | 53.846 | 117 | 53 | 1 | 28 | 143 | 12 | 128 | 1.89e-30 | 113 |
MS.gene033166.t1 | AT1G27045 | 53.846 | 117 | 53 | 1 | 28 | 143 | 12 | 128 | 1.89e-30 | 113 |
MS.gene033166.t1 | AT1G27045 | 49.194 | 124 | 56 | 1 | 16 | 132 | 37 | 160 | 2.62e-29 | 112 |
MS.gene033166.t1 | AT2G46680 | 46.903 | 113 | 60 | 0 | 31 | 143 | 23 | 135 | 3.54e-28 | 108 |
MS.gene033166.t1 | AT2G18550 | 48.120 | 133 | 54 | 3 | 10 | 142 | 39 | 156 | 3.97e-28 | 108 |
MS.gene033166.t1 | AT3G61890 | 51.485 | 101 | 48 | 1 | 43 | 143 | 33 | 132 | 2.25e-27 | 106 |
MS.gene033166.t1 | AT2G46680 | 51.020 | 98 | 48 | 0 | 31 | 128 | 23 | 120 | 9.67e-27 | 105 |
MS.gene033166.t1 | AT4G36740 | 50.485 | 103 | 44 | 1 | 40 | 142 | 55 | 150 | 1.15e-25 | 101 |
MS.gene033166.t1 | AT2G36610 | 40.909 | 154 | 65 | 5 | 12 | 148 | 34 | 178 | 1.29e-25 | 100 |
MS.gene033166.t1 | AT4G36740 | 50.485 | 103 | 44 | 1 | 40 | 142 | 56 | 151 | 1.30e-25 | 101 |
MS.gene033166.t1 | AT5G03790 | 45.528 | 123 | 54 | 3 | 40 | 156 | 77 | 192 | 1.63e-25 | 101 |
MS.gene033166.t1 | AT5G03790 | 53.763 | 93 | 36 | 1 | 40 | 132 | 77 | 162 | 2.46e-25 | 99.8 |
MS.gene033166.t1 | AT5G66700 | 48.454 | 97 | 43 | 1 | 40 | 136 | 71 | 160 | 9.17e-23 | 94.0 |
MS.gene033166.t1 | AT3G60390 | 46.281 | 121 | 54 | 3 | 12 | 132 | 138 | 247 | 1.12e-18 | 84.3 |
MS.gene033166.t1 | AT5G06710 | 48.624 | 109 | 40 | 2 | 24 | 132 | 183 | 275 | 1.18e-18 | 84.7 |
MS.gene033166.t1 | AT5G53980 | 46.667 | 90 | 48 | 0 | 40 | 129 | 11 | 100 | 4.29e-18 | 79.7 |
MS.gene033166.t1 | AT5G47370 | 48.077 | 104 | 47 | 1 | 29 | 132 | 119 | 215 | 9.16e-18 | 81.6 |
MS.gene033166.t1 | AT2G44910 | 51.613 | 93 | 38 | 1 | 40 | 132 | 163 | 248 | 1.56e-17 | 81.3 |
MS.gene033166.t1 | AT4G16780 | 45.133 | 113 | 47 | 2 | 20 | 132 | 117 | 214 | 1.60e-17 | 80.9 |
MS.gene033166.t1 | AT4G17460 | 47.619 | 105 | 47 | 2 | 29 | 132 | 123 | 220 | 5.70e-17 | 79.3 |
MS.gene033166.t1 | AT2G22800 | 43.750 | 96 | 54 | 0 | 32 | 127 | 105 | 200 | 1.69e-15 | 75.1 |
MS.gene033166.t1 | AT2G01430 | 42.478 | 113 | 51 | 3 | 25 | 132 | 121 | 224 | 1.07e-14 | 72.8 |
MS.gene033166.t1 | AT4G37790 | 43.810 | 105 | 52 | 2 | 28 | 132 | 114 | 211 | 1.98e-14 | 72.0 |
MS.gene033166.t1 | AT5G06710 | 41.837 | 98 | 46 | 2 | 24 | 119 | 183 | 271 | 8.53e-14 | 70.1 |
MS.gene033166.t1 | AT2G01430 | 46.575 | 73 | 32 | 2 | 25 | 92 | 121 | 191 | 7.27e-12 | 63.9 |
MS.gene033166.t1 | AT1G70920 | 43.011 | 93 | 46 | 1 | 40 | 132 | 69 | 154 | 2.13e-11 | 62.4 |
MS.gene033166.t1 | AT1G70920 | 43.011 | 93 | 46 | 1 | 40 | 132 | 39 | 124 | 2.20e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCTCAACAATTGACAATT+TGG | 0.241624 | 8.3:-16107291 | None:intergenic |
TGAGAGACGCCGTTTCTTCT+CGG | 0.306253 | 8.3:-16106506 | None:intergenic |
TCAACCAAAGGTTTATTCAT+TGG | 0.340677 | 8.3:-16107245 | None:intergenic |
AGCCACGGCAAGTTGCTATT+TGG | 0.343826 | 8.3:+16106623 | MS.gene033166:CDS |
TTCAGCAAGGAGTGACATAT+TGG | 0.347228 | 8.3:+16107346 | MS.gene033166:CDS |
AAGATAATCATCAAGCTCTT+TGG | 0.354671 | 8.3:+16107564 | MS.gene033166:CDS |
TGTCTTCTTCATCTTGTGAT+AGG | 0.364063 | 8.3:-16107451 | None:intergenic |
CCACATAATTCATCAAGTTA+TGG | 0.374938 | 8.3:+16107530 | MS.gene033166:CDS |
ACCAAGGTCTTTAGCTAGCT+TGG | 0.382164 | 8.3:-16106596 | None:intergenic |
ATCATCAAGCTCTTTGGCCT+TGG | 0.382441 | 8.3:+16107570 | MS.gene033166:CDS |
GGATTTGATCTTGACGAAAA+CGG | 0.405214 | 8.3:+16106451 | MS.gene033166:CDS |
ATAATCCTTCTCAAGCTGTT+TGG | 0.413395 | 8.3:-16106674 | None:intergenic |
TGAAACAAAGGAATTCTTGC+AGG | 0.414573 | 8.3:+16107217 | MS.gene033166:CDS |
AAGGAAGGAAAAGGTGCAAC+AGG | 0.438515 | 8.3:+16106416 | MS.gene033166:CDS |
ACCACCAATGAATAAACCTT+TGG | 0.443957 | 8.3:+16107241 | MS.gene033166:CDS |
ACCTTCTCAAAGAGAAAGAT+AGG | 0.463134 | 8.3:+16106743 | MS.gene033166:CDS |
CGAAAACGGCGAGGATGAGA+TGG | 0.475286 | 8.3:+16106465 | MS.gene033166:CDS |
AGGTGCAACAGGTCTTTCTT+CGG | 0.489691 | 8.3:+16106427 | MS.gene033166:CDS |
ACCAAAGGTTTATTCATTGG+TGG | 0.490303 | 8.3:-16107242 | None:intergenic |
TTTGGTTGATTCAGTTTCTG+AGG | 0.492605 | 8.3:+16107259 | MS.gene033166:CDS |
GGTAGCAAGCCTAACTGAAA+AGG | 0.493946 | 8.3:+16107148 | MS.gene033166:intron |
ACCTATCTTTCTCTTTGAGA+AGG | 0.495244 | 8.3:-16106744 | None:intergenic |
AAGACCTTGGTTTGCAGCCA+CGG | 0.500948 | 8.3:+16106608 | MS.gene033166:CDS |
ATCCAAATTGTCAATTGTTG+AGG | 0.508800 | 8.3:+16107289 | MS.gene033166:CDS |
TTCATCAATCCGAGAAGAAA+CGG | 0.510950 | 8.3:+16106497 | MS.gene033166:CDS |
TTGGTTGATTCAGTTTCTGA+GGG | 0.528561 | 8.3:+16107260 | MS.gene033166:CDS |
TCTTGAGAAAAGCTTTGAAG+AGG | 0.530902 | 8.3:+16106546 | MS.gene033166:CDS |
CCATAACTTGATGAATTATG+TGG | 0.532883 | 8.3:-16107530 | None:intergenic |
GAAAGATAGGTTACAATCTG+AGG | 0.533848 | 8.3:+16106756 | MS.gene033166:CDS |
AAGATGTTCAAGGAAGGAAA+AGG | 0.536023 | 8.3:+16106407 | MS.gene033166:CDS |
TTCAAAACCGTCGTGCAAGA+TGG | 0.537462 | 8.3:+16106647 | MS.gene033166:CDS |
ATTTGAACATGAATATCAAT+CGG | 0.545738 | 8.3:+16107427 | MS.gene033166:CDS |
ACCAAGCTAGCTAAAGACCT+TGG | 0.547629 | 8.3:+16106595 | MS.gene033166:CDS |
GATTCAGTTTCTGAGGGTGA+AGG | 0.550989 | 8.3:+16107266 | MS.gene033166:CDS |
ATATTCATGTTCAAATACAT+AGG | 0.565080 | 8.3:-16107420 | None:intergenic |
TGCAACAGGTCTTTCTTCGG+AGG | 0.566461 | 8.3:+16106430 | MS.gene033166:CDS |
ACTGATGGAGTGTTAGAGAC+AGG | 0.581498 | 8.3:+16107389 | MS.gene033166:CDS |
AACTTGATGAATTATGTGGC+GGG | 0.586622 | 8.3:-16107526 | None:intergenic |
CTTGCCGTGGCTGCAAACCA+AGG | 0.588928 | 8.3:-16106612 | None:intergenic |
GAAGAAACGGCGTCTCTCAG+TGG | 0.590083 | 8.3:+16106510 | MS.gene033166:CDS |
ATCAAGTTATGGATTTCAAG+AGG | 0.600284 | 8.3:+16107541 | MS.gene033166:CDS |
GATAGCCCACGTTACACTGA+TGG | 0.601134 | 8.3:+16107374 | MS.gene033166:CDS |
ACAAGGTGAAAGTGAAACAA+AGG | 0.601903 | 8.3:+16107205 | MS.gene033166:CDS |
TGATGAATTATGTGGCGGGT+CGG | 0.611170 | 8.3:-16107522 | None:intergenic |
TGGTCTTCCATCTTGCACGA+CGG | 0.616539 | 8.3:-16106654 | None:intergenic |
GAAGACCAAACAGCTTGAGA+AGG | 0.620125 | 8.3:+16106669 | MS.gene033166:CDS |
TAACTTGATGAATTATGTGG+CGG | 0.625613 | 8.3:-16107527 | None:intergenic |
CAAGAGGGAAAATTCAAACA+AGG | 0.630062 | 8.3:+16107188 | MS.gene033166:CDS |
AACACTCCATCAGTGTAACG+TGG | 0.635850 | 8.3:-16107380 | None:intergenic |
ATGAAGATATTAGTTCAGCA+AGG | 0.640831 | 8.3:+16107333 | MS.gene033166:CDS |
AACCAAATAGCAACTTGCCG+TGG | 0.641928 | 8.3:-16106625 | None:intergenic |
CATATCATTTAATAAGACCA+AGG | 0.657999 | 8.3:-16107587 | None:intergenic |
ACTTGCAAGAGAGAAACAAG+AGG | 0.662555 | 8.3:+16107172 | MS.gene033166:CDS |
TCAGAAACTGAATCAACCAA+AGG | 0.671154 | 8.3:-16107257 | None:intergenic |
TGATCTTGACGAAAACGGCG+AGG | 0.684795 | 8.3:+16106456 | MS.gene033166:CDS |
CTTGCAAGAGAGAAACAAGA+GGG | 0.688671 | 8.3:+16107173 | MS.gene033166:CDS |
ACAACAAGCTTGAACCAGAG+AGG | 0.699556 | 8.3:+16106569 | MS.gene033166:CDS |
ACACTCCATCAGTGTAACGT+GGG | 0.703705 | 8.3:-16107379 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATAAAATTCATGAAATTG+TGG | + | chr8.3:16107059-16107078 | MS.gene033166:intron | 20.0% |
!! | ATATTCATGTTCAAATACAT+AGG | - | chr8.3:16107423-16107442 | None:intergenic | 20.0% |
!! | ATTTGAACATGAATATCAAT+CGG | + | chr8.3:16107427-16107446 | MS.gene033166:CDS | 20.0% |
!!! | CTTAATTGTAAATTTGAGAT+CGG | + | chr8.3:16106864-16106883 | MS.gene033166:intron | 20.0% |
!!! | TCAAGTTTTGTAAAGATGTA+AGG | - | chr8.3:16107488-16107507 | None:intergenic | 25.0% |
AAGATAATCATCAAGCTCTT+TGG | + | chr8.3:16107564-16107583 | MS.gene033166:CDS | 30.0% | |
ATCAAGTTATGGATTTCAAG+AGG | + | chr8.3:16107541-16107560 | MS.gene033166:CDS | 30.0% | |
ATCCAAATTGTCAATTGTTG+AGG | + | chr8.3:16107289-16107308 | MS.gene033166:CDS | 30.0% | |
ATGAAGATATTAGTTCAGCA+AGG | + | chr8.3:16107333-16107352 | MS.gene033166:CDS | 30.0% | |
CCACATAATTCATCAAGTTA+TGG | + | chr8.3:16107530-16107549 | MS.gene033166:CDS | 30.0% | |
CCATAACTTGATGAATTATG+TGG | - | chr8.3:16107533-16107552 | None:intergenic | 30.0% | |
TAACTTGATGAATTATGTGG+CGG | - | chr8.3:16107530-16107549 | None:intergenic | 30.0% | |
TCAACCAAAGGTTTATTCAT+TGG | - | chr8.3:16107248-16107267 | None:intergenic | 30.0% | |
TCTTTGTGATGTTTCAATAC+AGG | + | chr8.3:16107127-16107146 | MS.gene033166:intron | 30.0% | |
TGTGGTTCACATAAAACTAT+TGG | + | chr8.3:16107077-16107096 | MS.gene033166:intron | 30.0% | |
!! | AGTTTTGTAAAGATGTAAGG+AGG | - | chr8.3:16107485-16107504 | None:intergenic | 30.0% |
AACTTGATGAATTATGTGGC+GGG | - | chr8.3:16107529-16107548 | None:intergenic | 35.0% | |
AAGATGTTCAAGGAAGGAAA+AGG | + | chr8.3:16106407-16106426 | MS.gene033166:CDS | 35.0% | |
ACAAGGTGAAAGTGAAACAA+AGG | + | chr8.3:16107205-16107224 | MS.gene033166:CDS | 35.0% | |
ACCAAAGGTTTATTCATTGG+TGG | - | chr8.3:16107245-16107264 | None:intergenic | 35.0% | |
ACCACCAATGAATAAACCTT+TGG | + | chr8.3:16107241-16107260 | MS.gene033166:CDS | 35.0% | |
ACCTTCTCAAAGAGAAAGAT+AGG | + | chr8.3:16106743-16106762 | MS.gene033166:CDS | 35.0% | |
AGCCTCAACAATTGACAATT+TGG | - | chr8.3:16107294-16107313 | None:intergenic | 35.0% | |
ATAATCCTTCTCAAGCTGTT+TGG | - | chr8.3:16106677-16106696 | None:intergenic | 35.0% | |
CAAGAGGGAAAATTCAAACA+AGG | + | chr8.3:16107188-16107207 | MS.gene033166:CDS | 35.0% | |
GAAAGATAGGTTACAATCTG+AGG | + | chr8.3:16106756-16106775 | MS.gene033166:CDS | 35.0% | |
GGATTTGATCTTGACGAAAA+CGG | + | chr8.3:16106451-16106470 | MS.gene033166:CDS | 35.0% | |
TCAGAAACTGAATCAACCAA+AGG | - | chr8.3:16107260-16107279 | None:intergenic | 35.0% | |
TGAAACAAAGGAATTCTTGC+AGG | + | chr8.3:16107217-16107236 | MS.gene033166:CDS | 35.0% | |
TGTCTTCTTCATCTTGTGAT+AGG | - | chr8.3:16107454-16107473 | None:intergenic | 35.0% | |
TTCATCAATCCGAGAAGAAA+CGG | + | chr8.3:16106497-16106516 | MS.gene033166:CDS | 35.0% | |
! | ACCTATCTTTCTCTTTGAGA+AGG | - | chr8.3:16106747-16106766 | None:intergenic | 35.0% |
! | TTGCAAGTACCTTTTCAGTT+AGG | - | chr8.3:16107160-16107179 | None:intergenic | 35.0% |
! | TTGGTTGATTCAGTTTCTGA+GGG | + | chr8.3:16107260-16107279 | MS.gene033166:CDS | 35.0% |
! | TTTGGTTGATTCAGTTTCTG+AGG | + | chr8.3:16107259-16107278 | MS.gene033166:CDS | 35.0% |
!! | TCTTGAGAAAAGCTTTGAAG+AGG | + | chr8.3:16106546-16106565 | MS.gene033166:CDS | 35.0% |
!!! | GTGAGTTTTGAAGATGTTCA+AGG | + | chr8.3:16106397-16106416 | MS.gene033166:CDS | 35.0% |
!!! | GTTTTGAAGATGTTCAAGGA+AGG | + | chr8.3:16106401-16106420 | MS.gene033166:CDS | 35.0% |
ACTTGCAAGAGAGAAACAAG+AGG | + | chr8.3:16107172-16107191 | MS.gene033166:CDS | 40.0% | |
CTTGCAAGAGAGAAACAAGA+GGG | + | chr8.3:16107173-16107192 | MS.gene033166:CDS | 40.0% | |
TTCAGCAAGGAGTGACATAT+TGG | + | chr8.3:16107346-16107365 | MS.gene033166:CDS | 40.0% | |
AACACTCCATCAGTGTAACG+TGG | - | chr8.3:16107383-16107402 | None:intergenic | 45.0% | |
AACCAAATAGCAACTTGCCG+TGG | - | chr8.3:16106628-16106647 | None:intergenic | 45.0% | |
ACAACAAGCTTGAACCAGAG+AGG | + | chr8.3:16106569-16106588 | MS.gene033166:CDS | 45.0% | |
ACACTCCATCAGTGTAACGT+GGG | - | chr8.3:16107382-16107401 | None:intergenic | 45.0% | |
ACCAAGCTAGCTAAAGACCT+TGG | + | chr8.3:16106595-16106614 | MS.gene033166:CDS | 45.0% | |
ACCAAGGTCTTTAGCTAGCT+TGG | - | chr8.3:16106599-16106618 | None:intergenic | 45.0% | |
AGGTGCAACAGGTCTTTCTT+CGG | + | chr8.3:16106427-16106446 | MS.gene033166:CDS | 45.0% | |
ATCATCAAGCTCTTTGGCCT+TGG | + | chr8.3:16107570-16107589 | MS.gene033166:CDS | 45.0% | |
GAAGACCAAACAGCTTGAGA+AGG | + | chr8.3:16106669-16106688 | MS.gene033166:CDS | 45.0% | |
GGTAGCAAGCCTAACTGAAA+AGG | + | chr8.3:16107148-16107167 | MS.gene033166:intron | 45.0% | |
TTCAAAACCGTCGTGCAAGA+TGG | + | chr8.3:16106647-16106666 | MS.gene033166:CDS | 45.0% | |
! | AAGGAAGGAAAAGGTGCAAC+AGG | + | chr8.3:16106416-16106435 | MS.gene033166:CDS | 45.0% |
! | ACTGATGGAGTGTTAGAGAC+AGG | + | chr8.3:16107389-16107408 | MS.gene033166:CDS | 45.0% |
! | GATTCAGTTTCTGAGGGTGA+AGG | + | chr8.3:16107266-16107285 | MS.gene033166:CDS | 45.0% |
!! | TGATGAATTATGTGGCGGGT+CGG | - | chr8.3:16107525-16107544 | None:intergenic | 45.0% |
GATAGCCCACGTTACACTGA+TGG | + | chr8.3:16107374-16107393 | MS.gene033166:CDS | 50.0% | |
TGAGAGACGCCGTTTCTTCT+CGG | - | chr8.3:16106509-16106528 | None:intergenic | 50.0% | |
TGATCTTGACGAAAACGGCG+AGG | + | chr8.3:16106456-16106475 | MS.gene033166:CDS | 50.0% | |
TGCAACAGGTCTTTCTTCGG+AGG | + | chr8.3:16106430-16106449 | MS.gene033166:CDS | 50.0% | |
TGGTCTTCCATCTTGCACGA+CGG | - | chr8.3:16106657-16106676 | None:intergenic | 50.0% | |
! | AGCCACGGCAAGTTGCTATT+TGG | + | chr8.3:16106623-16106642 | MS.gene033166:CDS | 50.0% |
!! | AAGACCTTGGTTTGCAGCCA+CGG | + | chr8.3:16106608-16106627 | MS.gene033166:CDS | 50.0% |
!! | GCTAGCTTGGTTTTCCTCTC+TGG | - | chr8.3:16106586-16106605 | None:intergenic | 50.0% |
CGAAAACGGCGAGGATGAGA+TGG | + | chr8.3:16106465-16106484 | MS.gene033166:CDS | 55.0% | |
GAAGAAACGGCGTCTCTCAG+TGG | + | chr8.3:16106510-16106529 | MS.gene033166:CDS | 55.0% | |
CTTGCCGTGGCTGCAAACCA+AGG | - | chr8.3:16106615-16106634 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 16106394 | 16107601 | 16106394 | ID=MS.gene033166 |
chr8.3 | mRNA | 16106394 | 16107601 | 16106394 | ID=MS.gene033166.t1;Parent=MS.gene033166 |
chr8.3 | exon | 16106394 | 16106777 | 16106394 | ID=MS.gene033166.t1.exon1;Parent=MS.gene033166.t1 |
chr8.3 | CDS | 16106394 | 16106777 | 16106394 | ID=cds.MS.gene033166.t1;Parent=MS.gene033166.t1 |
chr8.3 | exon | 16107149 | 16107601 | 16107149 | ID=MS.gene033166.t1.exon2;Parent=MS.gene033166.t1 |
chr8.3 | CDS | 16107149 | 16107601 | 16107149 | ID=cds.MS.gene033166.t1;Parent=MS.gene033166.t1 |
Gene Sequence |
Protein sequence |