AlfalfaGEDB | MS.gene033193

M. sativa cultivar XinJiangDaYe / MS.gene033193

KEGG: K04688
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00433.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033193.t1	XP_013457846.1	93	430	6	5	1	415	1	421	1.30E-204	722.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033193.t1	Q39030	64.6	336	90	5	90	408	136	459	6.4e-123	442.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033193.t1	A0A072UQE4	93.0	430	6	5	1	415	1	421	9.6e-205	722.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033193.t1	MTR_4g107280	92.791	430	7	5	1	415	1	421	0.0	762
MS.gene033193.t1	MTR_4g107280	89.904	416	7	5	1	415	1	382	0.0	748
MS.gene033193.t1	MTR_7g073520	54.545	429	150	6	14	408	48	465	1.37e-162	466
MS.gene033193.t1	MTR_4g035835	36.774	310	136	6	93	354	758	1055	1.02e-62	219
MS.gene033193.t1	MTR_5g069000	36.774	310	136	6	93	354	762	1059	4.69e-62	217
MS.gene033193.t1	MTR_6g470940	35.294	323	146	6	93	366	876	1184	1.12e-60	213
MS.gene033193.t1	MTR_1g019340	32.338	402	181	13	75	405	89	470	2.82e-57	196
MS.gene033193.t1	MTR_1g019340	33.060	366	168	11	75	379	89	438	2.71e-56	192
MS.gene033193.t1	MTR_1g069735	31.675	382	177	11	57	379	92	448	6.68e-55	189
MS.gene033193.t1	MTR_1g069735	31.675	382	177	11	57	379	92	448	1.12e-54	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033193.t1	AT3G08720	57.767	412	124	9	31	408	64	459	1.05e-160	461
MS.gene033193.t1	AT3G08720	57.767	412	124	9	31	408	64	459	1.05e-160	461
MS.gene033193.t1	AT3G08720	57.767	412	124	9	31	408	64	459	1.05e-160	461
MS.gene033193.t1	AT3G08720	57.767	412	124	9	31	408	64	459	1.05e-160	461
MS.gene033193.t1	AT3G08730	53.664	423	150	8	22	410	45	455	7.53e-150	433
MS.gene033193.t1	AT3G08730	53.664	423	150	8	22	410	45	455	7.53e-150	433
MS.gene033193.t1	AT5G62310	35.671	328	148	6	93	369	753	1068	6.05e-63	219
MS.gene033193.t1	AT3G17850	36.223	323	143	7	93	366	881	1189	3.55e-62	217
MS.gene033193.t1	AT1G48490	35.783	313	146	5	85	354	819	1119	1.31e-61	216
MS.gene033193.t1	AT1G48490	35.783	313	146	5	85	354	819	1119	1.31e-61	216

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Find 111 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCCTTGTCGACATAAA+TGG	0.241208	8.3:+16491056	None:intergenic
AACATACTCATGGATTCTCA+TGG	0.607244	8.3:-16490845	MS.gene033193:CDS
AAGAAGATGGAGGAATGGTG+AGG	0.613224	8.3:+16491694	None:intergenic
AAGAATGAGCGTCACTGGTA+AGG	0.514114	8.3:+16490033	None:intergenic
AAGGATCCATCAACAAGGTT+AGG	0.543420	8.3:-16489458	MS.gene033193:CDS
AAGGGACGAGAAGAAGAAGA+TGG	0.480067	8.3:+16491681	None:intergenic
AAGGTGGAGGAGGGAAGCGA+GGG	0.484966	8.3:+16491583	None:intergenic
AATCAATTGGACCAAATTGG+AGG	0.579530	8.3:-16489384	MS.gene033193:CDS
AATGGTGAGGTTGGTGAGAT+TGG	0.329814	8.3:+16491707	None:intergenic
AATGGTTTAAGTCAATCAAT+TGG	0.408780	8.3:-16489397	MS.gene033193:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATTGTGAGACTGTTT+GGG	+	chr8.3:16491251-16491270	None:intergenic	30.0%
AATTCTTCAAACGGTAACAA+CGG	-	chr8.3:16489562-16489581	MS.gene033193:intron	30.0%
ACGTAATTGCTTATGCAATA+GGG	-	chr8.3:16490553-16490572	MS.gene033193:intron	30.0%
ATTGACTGACATATATTAGC+AGG	+	chr8.3:16490495-16490514	None:intergenic	30.0%
CAAATGACACTTAACAATCA+GGG	+	chr8.3:16490788-16490807	None:intergenic	30.0%
CTACCTTGACATATATTTGT+TGG	-	chr8.3:16490991-16491010	MS.gene033193:intron	30.0%
CTCTTGTATGAAATGATAAC+GGG	-	chr8.3:16490353-16490372	MS.gene033193:intron	30.0%
GACATAAATGGAAGAAAAGA+TGG	+	chr8.3:16489854-16489873	None:intergenic	30.0%
GCTCTTGTATGAAATGATAA+CGG	-	chr8.3:16490352-16490371	MS.gene033193:intron	30.0%
GTTTATTTGAGCTTACCTAT+TGG	+	chr8.3:16491277-16491296	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	16489202	16491739	16489202	ID=MS.gene033193
chr8.3	mRNA	16489202	16491739	16489202	ID=MS.gene033193.t1;Parent=MS.gene033193
chr8.3	exon	16491266	16491739	16491266	ID=MS.gene033193.t1.exon1;Parent=MS.gene033193.t1
chr8.3	CDS	16491266	16491739	16491266	ID=cds.MS.gene033193.t1;Parent=MS.gene033193.t1
chr8.3	exon	16491052	16491134	16491052	ID=MS.gene033193.t1.exon2;Parent=MS.gene033193.t1
chr8.3	CDS	16491052	16491134	16491052	ID=cds.MS.gene033193.t1;Parent=MS.gene033193.t1
chr8.3	exon	16490841	16490961	16490841	ID=MS.gene033193.t1.exon3;Parent=MS.gene033193.t1
chr8.3	CDS	16490841	16490961	16490841	ID=cds.MS.gene033193.t1;Parent=MS.gene033193.t1
chr8.3	exon	16490562	16490735	16490562	ID=MS.gene033193.t1.exon4;Parent=MS.gene033193.t1
chr8.3	CDS	16490562	16490735	16490562	ID=cds.MS.gene033193.t1;Parent=MS.gene033193.t1
chr8.3	exon	16490022	16490129	16490022	ID=MS.gene033193.t1.exon5;Parent=MS.gene033193.t1
chr8.3	CDS	16490022	16490129	16490022	ID=cds.MS.gene033193.t1;Parent=MS.gene033193.t1
chr8.3	exon	16489202	16489489	16489202	ID=MS.gene033193.t1.exon6;Parent=MS.gene033193.t1
chr8.3	CDS	16489202	16489489	16489202	ID=cds.MS.gene033193.t1;Parent=MS.gene033193.t1

Gene Sequence

>MS.gene033193

ATGGCTTCCTCCAATCTCACCAACCTCACCATTCCTCCATCTTCTTCTTCTCGTCCCTTCAACGATTCCAACCCATCTCCTTCCACCAGCCCACAAGTCATTCACAGTAGGTCCCACTCCTTCGTCGGTCCCTCCCCTCGCTTCCCTCCTCCACCTTCCGACACCAACAACAACAACAATTCTCTCTTCTTCCTCGACGAACTCACTTCCAACAGCGACGAAGAAGAACAAAACGAAGAAATTCAACAACCTCTCCAACACAAATTCGGTCCCGCAGATTTCCAAATTCTCAGAGTTGTAGGACAAGGTGCCTTTGGCAAAGTCTTCATGGTCAGAAAAAAAGTTGCTCATTCTGATTCAAATTCTTCAAACGGTAACAACGGAATCTTCGCTATGAAGGTTATGAGAAAAGACAACATCATTAAGAAAAATCATGTTGATTATATGAAAGCTGAAAGAGATATTCTTACTAAAGTTCTTCATCCTTTCATTGTTCCTCTTCGCTACTCTTTCCAAGTCTCTTTCTCTTTCTCTCTTTAATTAGTACTCAATTACTCTCAATTTTATATAAAAGTAACTTACTTAATGTTTATGTTTACTTGCAGACTAAATCTAAATTATATTTGATTTTGGACTTTATAAATGGTGGCCATCTTTTCTTCCATTTATGTCGACAAGGCATTTTTAGGTATGTTTTGTTACTAATCATATTCATAATGTTTTGTTTAATACTCTTTGAATTCACATTAAAGTTTTTAAATTTGGTTTTGTTGGGTAGTGAGGATGAGGCAAGGATTTACACTGCTGAGATTGTATCTGCTGTTTCACATCTTCACAGTAAAGGCATCGTGCATCGAGATCTTAAACCCGAAAACATACTCATGGATTCTCATGGCCATGTAAACAATATCAATTATTTCCTTTGATTTATTATTATGTTTAGTGTTATTGGCAATCGGGTGAAAAATCTGATCTTATTTATGTTTCTTTGTTAAATGTTGTAGGTGATGTTAACTGATTTTGGAATGTCGAAAGAGATTAAGGAATCTGAGAGATCTAACTCCATGTGTGGGACTACTGAATATATGGCTCCGGAAATCCTTCTGGGTAAAGGACATAACAAGGATGCGGATTGGTGGAGTGTTGGAGCGCTCTTGTATGAAATGATAACGGGGAAGGTAATGAATGAACATGACTCGTGAATATCATCTCTTGAATTGTTTAGTACTACTCAGTTTGTCAATTGTGTATGTGTGTCTGTGTATGTGAAGGAGTAACCCTCCGTATTATCCTGCTAATATATGTCAGTCAATCTAATCTTGAATAGAGAACTATAGGTGTCTTGTCCTGGACGTAATTGCTTATGCAATAGGGGAAAGGTAGTTAATTTTATGGGAATGGAAAGTTTGGATAAGGAGCTTATTGAGAATCAATCTTTTTATTAATTATTGTTTTGGAAATTGATGTCTTGATGAAACTGCTTATTTTGCTATTGGGAAGTTTTTTTTTTGTGTGTGTGTAAGTGCACCAGGTAGAATTGTCTGTAATAGAAAGGATTTTTGCTATGTTACGTTCATTCTTTTCCCTGATTGTTAAGTGTCATTTGGCAGGCACCATTTACACATACTAACAGAAAGAAGCTACAGGAGAAAATTATTAAAGAGAAAGTTAAATTTCCACCGTACCTTACCAGTGACGCTCATTCTTTGCTCAAAGGAGTAAGTAGACAACACACAGTACTTTACAAGCTTTAGGTGTAAAGGTTTCAGATTGTATATTTCTGAATTCACTACCTTGACATATATTTGTTGGTATATTTCTGAATTACTTTTTTTAGGCCTATTTGTATAAACAATTTAAGTGATCATAGCATAAGCACTTATCATATAAGTGGTCATGTATAAACTATTTCTATAAAAAAGATAAAATAAAGTCGAACTGTTTTCATATAAGCTACAAGCTGTTTTGATAAGCTATCCTAGAGAACTTACGAAAATTAGTTAAAAATAGCTAATGGATACATCATAATTTGTTTTCATAAGCTCTCCCAAACAGTCTCACAATTGTTTATGCCAATAGGTAAGCTCAAATAAACCAATCCAAACCGGCCCTTGGTGAGCGTGACTTTTTTGGGAGATATTGTATACCAGTGCTCTTCTTTACTCCAAAAGTGACCTTATCTATATTCTATTAGGATAGTTCTATTCATTAAAAGAAGACTGCACATTGATTCCTGTTTACTTGTTACAGTTGCTGCAAAAGGATCCATCAACAAGGTTAGGCAGTGGGCCAAATGGAGATGAGCAGATAAAAAATCATAAATGGTTTAAGTCAATCAATTGGACCAAATTGGAGGCAAGAGAAGTGCAGCCCAAGTTTAAACCAGCTGATGTGGCTGGAAAAGAGTGCACGGCTAATTTTGATCGATGCTGGACAACAATGCCTCTCGAGGACTCACCAGCATCAACTCCTACAGCAGGTGACCATTTTCAGGGCTATACTTATGTGGCACCAAATCCTTGGCTTTCTTCTAGATAA

Protein sequence

>MS.gene033193.t1

MASSNLTNLTIPPSSSSRPFNDSNPSPSTSPQVIHSRSHSFVGPSPRFPPPPSDTNNNNNSLFFLDELTSNSDEEEQNEEIQQPLQHKFGPADFQILRVVGQGAFGKVFMVRKKVAHSDSNSSNGNNGIFAMKVMRKDNIIKKNHVDYMKAERDILTKTKSKLYLILDFINGGHLFFHLCRQGIFSEDEARIYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIKESERSNSMCGTTEYMAPEILLGKGHNKDADWWSVGALLYEMITGKAPFTHTNRKKLQEKIIKEKVKFPPYLTSDAHSLLKGLLQKDPSTRLGSGPNGDEQIKNHKWFKSINWTKLEAREVQPKFKPADVAGKECTANFDRCWTTMPLEDSPASTPTAGDHFQGYTYVAPNPWLSSR