Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033195.t1 | XP_013457844.1 | 94.2 | 293 | 7 | 4 | 1 | 289 | 1 | 287 | 4.60E-143 | 517.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033195.t1 | Q2V9B0 | 47.3 | 298 | 137 | 8 | 2 | 289 | 10 | 297 | 2.9e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033195.t1 | A0A072V1C4 | 94.2 | 293 | 7 | 4 | 1 | 289 | 1 | 287 | 3.3e-143 | 517.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033195.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033195.t1 | MTR_4g107230 | 93.174 | 293 | 10 | 4 | 1 | 289 | 1 | 287 | 4.56e-178 | 492 |
| MS.gene033195.t1 | MTR_5g037080 | 56.757 | 185 | 47 | 5 | 6 | 175 | 19 | 185 | 1.29e-49 | 167 |
| MS.gene033195.t1 | MTR_4g100630 | 57.746 | 142 | 52 | 4 | 18 | 155 | 25 | 162 | 2.66e-47 | 161 |
| MS.gene033195.t1 | MTR_2g100930 | 43.684 | 190 | 67 | 5 | 3 | 167 | 15 | 189 | 1.20e-42 | 149 |
| MS.gene033195.t1 | MTR_0036s0260 | 91.176 | 68 | 6 | 0 | 88 | 155 | 28 | 95 | 3.23e-38 | 134 |
| MS.gene033195.t1 | MTR_6g092540 | 36.749 | 283 | 140 | 10 | 13 | 277 | 24 | 285 | 8.57e-38 | 135 |
| MS.gene033195.t1 | MTR_2g090305 | 88.235 | 68 | 8 | 0 | 88 | 155 | 28 | 95 | 6.58e-36 | 127 |
| MS.gene033195.t1 | MTR_3g462790 | 61.702 | 94 | 32 | 1 | 76 | 165 | 135 | 228 | 2.07e-34 | 127 |
| MS.gene033195.t1 | MTR_8g101650 | 73.239 | 71 | 18 | 1 | 82 | 152 | 99 | 168 | 4.73e-34 | 125 |
| MS.gene033195.t1 | MTR_4g111975 | 71.622 | 74 | 21 | 0 | 81 | 154 | 131 | 204 | 6.16e-34 | 125 |
| MS.gene033195.t1 | MTR_1g111830 | 65.169 | 89 | 29 | 2 | 81 | 167 | 117 | 205 | 3.76e-33 | 122 |
| MS.gene033195.t1 | MTR_5g069710 | 66.667 | 81 | 27 | 0 | 78 | 158 | 122 | 202 | 1.45e-32 | 122 |
| MS.gene033195.t1 | MTR_7g067080 | 66.667 | 78 | 26 | 0 | 76 | 153 | 128 | 205 | 2.80e-31 | 119 |
| MS.gene033195.t1 | MTR_5g081860 | 61.176 | 85 | 31 | 1 | 76 | 158 | 113 | 197 | 7.66e-30 | 114 |
| MS.gene033195.t1 | MTR_3g104370 | 53.933 | 89 | 38 | 1 | 70 | 155 | 73 | 161 | 3.90e-27 | 105 |
| MS.gene033195.t1 | MTR_8g063600 | 60.811 | 74 | 27 | 1 | 82 | 153 | 100 | 173 | 5.90e-25 | 101 |
| MS.gene033195.t1 | MTR_5g027570 | 32.500 | 160 | 78 | 4 | 48 | 177 | 27 | 186 | 8.33e-24 | 97.1 |
| MS.gene033195.t1 | MTR_5g027550 | 45.631 | 103 | 49 | 3 | 70 | 166 | 60 | 161 | 1.10e-21 | 91.3 |
| MS.gene033195.t1 | MTR_5g088010 | 44.944 | 89 | 43 | 2 | 82 | 164 | 54 | 142 | 2.61e-20 | 88.2 |
| MS.gene033195.t1 | MTR_1g033620 | 46.875 | 96 | 46 | 1 | 104 | 194 | 21 | 116 | 1.03e-19 | 86.3 |
| MS.gene033195.t1 | MTR_8g063870 | 59.091 | 66 | 25 | 1 | 90 | 153 | 94 | 159 | 1.35e-19 | 86.7 |
| MS.gene033195.t1 | MTR_1g048660 | 56.250 | 64 | 28 | 0 | 89 | 152 | 13 | 76 | 1.97e-19 | 81.3 |
| MS.gene033195.t1 | MTR_5g088060 | 48.148 | 81 | 36 | 2 | 90 | 164 | 274 | 354 | 1.42e-18 | 85.5 |
| MS.gene033195.t1 | MTR_5g488160 | 48.148 | 81 | 36 | 2 | 90 | 164 | 274 | 354 | 1.42e-18 | 85.5 |
| MS.gene033195.t1 | MTR_4g015130 | 64.286 | 56 | 20 | 0 | 98 | 153 | 3 | 58 | 4.34e-18 | 77.4 |
| MS.gene033195.t1 | MTR_1g083180 | 51.429 | 70 | 30 | 2 | 90 | 156 | 63 | 131 | 4.70e-15 | 72.4 |
| MS.gene033195.t1 | MTR_5g075760 | 34.815 | 135 | 75 | 5 | 59 | 191 | 78 | 201 | 6.36e-15 | 72.4 |
| MS.gene033195.t1 | MTR_5g075790 | 39.423 | 104 | 52 | 4 | 90 | 191 | 115 | 209 | 2.11e-13 | 68.6 |
| MS.gene033195.t1 | MTR_3g070110 | 48.611 | 72 | 30 | 1 | 90 | 154 | 97 | 168 | 3.80e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033195.t1 | AT1G74840 | 57.080 | 226 | 80 | 7 | 8 | 229 | 16 | 228 | 2.39e-60 | 193 |
| MS.gene033195.t1 | AT1G74840 | 63.918 | 194 | 56 | 7 | 8 | 194 | 16 | 202 | 6.96e-60 | 191 |
| MS.gene033195.t1 | AT1G19000 | 60.894 | 179 | 53 | 4 | 1 | 165 | 4 | 179 | 2.68e-53 | 175 |
| MS.gene033195.t1 | AT1G19000 | 60.894 | 179 | 53 | 4 | 1 | 165 | 4 | 179 | 2.68e-53 | 175 |
| MS.gene033195.t1 | AT5G47390 | 54.658 | 161 | 63 | 3 | 18 | 173 | 25 | 180 | 8.32e-52 | 174 |
| MS.gene033195.t1 | AT1G70000 | 61.988 | 171 | 43 | 6 | 5 | 168 | 23 | 178 | 2.47e-50 | 167 |
| MS.gene033195.t1 | AT1G70000 | 61.988 | 171 | 43 | 6 | 5 | 168 | 23 | 178 | 2.47e-50 | 167 |
| MS.gene033195.t1 | AT3G16350 | 44.076 | 211 | 88 | 6 | 18 | 207 | 49 | 250 | 1.92e-39 | 142 |
| MS.gene033195.t1 | AT5G58900 | 51.304 | 115 | 50 | 1 | 76 | 190 | 129 | 237 | 2.25e-34 | 126 |
| MS.gene033195.t1 | AT1G49010 | 72.973 | 74 | 20 | 0 | 81 | 154 | 127 | 200 | 4.20e-34 | 126 |
| MS.gene033195.t1 | AT2G38090 | 58.763 | 97 | 40 | 0 | 65 | 161 | 118 | 214 | 7.22e-34 | 125 |
| MS.gene033195.t1 | AT5G04760 | 65.116 | 86 | 29 | 1 | 77 | 161 | 88 | 173 | 1.52e-33 | 122 |
| MS.gene033195.t1 | AT5G61620 | 39.362 | 188 | 83 | 6 | 4 | 177 | 22 | 192 | 4.46e-33 | 124 |
| MS.gene033195.t1 | AT5G08520 | 70.270 | 74 | 22 | 0 | 81 | 154 | 111 | 184 | 9.42e-33 | 122 |
| MS.gene033195.t1 | AT5G56840 | 57.282 | 103 | 32 | 3 | 63 | 164 | 73 | 164 | 6.17e-32 | 118 |
| MS.gene033195.t1 | AT3G11280 | 42.208 | 154 | 66 | 3 | 75 | 228 | 114 | 244 | 1.54e-29 | 113 |
| MS.gene033195.t1 | AT3G11280 | 42.208 | 154 | 66 | 3 | 75 | 228 | 114 | 244 | 1.54e-29 | 113 |
| MS.gene033195.t1 | AT5G01200 | 52.000 | 100 | 48 | 0 | 81 | 180 | 139 | 238 | 2.16e-29 | 112 |
| MS.gene033195.t1 | AT5G05790 | 61.250 | 80 | 31 | 0 | 75 | 154 | 118 | 197 | 2.75e-29 | 112 |
| MS.gene033195.t1 | AT5G05790 | 61.250 | 80 | 31 | 0 | 75 | 154 | 118 | 197 | 2.75e-29 | 112 |
| MS.gene033195.t1 | AT3G10580 | 60.000 | 70 | 26 | 1 | 84 | 153 | 91 | 158 | 5.39e-23 | 95.5 |
| MS.gene033195.t1 | AT3G10580 | 60.000 | 70 | 26 | 1 | 84 | 153 | 91 | 158 | 8.03e-23 | 95.9 |
| MS.gene033195.t1 | AT4G09450 | 50.000 | 94 | 46 | 1 | 69 | 161 | 71 | 164 | 1.23e-22 | 93.2 |
| MS.gene033195.t1 | AT5G23650 | 58.333 | 72 | 30 | 0 | 82 | 153 | 114 | 185 | 2.56e-22 | 95.1 |
| MS.gene033195.t1 | AT3G10590 | 46.512 | 86 | 45 | 1 | 76 | 161 | 99 | 183 | 3.47e-19 | 84.0 |
Find 70 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTCGCGGTCGCGGTTTC+TGG | 0.130907 | 8.3:+16514969 | None:intergenic |
| AACTCATATACTGACATAAA+AGG | 0.288173 | 8.3:+16513997 | None:intergenic |
| GTCAGACACAATGGAAGCTT+TGG | 0.339043 | 8.3:+16513861 | None:intergenic |
| GGAAGAGCACAAGCTGTTCT+TGG | 0.356599 | 8.3:-16514826 | MS.gene033195:CDS |
| TTGACCTGTTCTTCCTCCAT+TGG | 0.357105 | 8.3:+16514081 | None:intergenic |
| GATTGAATAGATTGTTGGTT+TGG | 0.370712 | 8.3:+16513908 | None:intergenic |
| TCTGAAACAACAAAAGGAAT+TGG | 0.370883 | 8.3:+16513886 | None:intergenic |
| TCGAACCTCGTTTACGTTCG+CGG | 0.379501 | 8.3:+16514956 | None:intergenic |
| GTCATCGGCGGAGGCGTAAC+CGG | 0.383661 | 8.3:+16515011 | None:intergenic |
| CTCGTTTACGTTCGCGGTCG+CGG | 0.408987 | 8.3:+16514962 | None:intergenic |
| TTTCTAGCTTCGGAGGCTGC+AGG | 0.428830 | 8.3:+16514033 | None:intergenic |
| TTGGTTGGATTGCAGAAAGT+TGG | 0.429183 | 8.3:-16514807 | MS.gene033195:CDS |
| AATTGGATTGAATAGATTGT+TGG | 0.429941 | 8.3:+16513903 | None:intergenic |
| TTTATGTCAGTATATGAGTT+GGG | 0.444220 | 8.3:-16513994 | MS.gene033195:CDS |
| ACCGCAGACTCCACCGTCTC+CGG | 0.449707 | 8.3:-16515180 | MS.gene033195:CDS |
| AATTCCAATGGAGGAAGAAC+AGG | 0.463202 | 8.3:-16514085 | MS.gene033195:CDS |
| TCAGACACAATGGAAGCTTT+GGG | 0.472033 | 8.3:+16513862 | None:intergenic |
| AGAAAGTTGGAAAAGGTGAT+TGG | 0.477943 | 8.3:-16514794 | MS.gene033195:CDS |
| TGGAGGGTCAATGGATGAAC+TGG | 0.479134 | 8.3:+16513825 | None:intergenic |
| GGAAAGTGTTGGAGGGTCAA+TGG | 0.479524 | 8.3:+16513816 | None:intergenic |
| GAGCACAAGCTGTTCTTGGT+TGG | 0.483963 | 8.3:-16514822 | MS.gene033195:CDS |
| CCAATGGAAGAACTCACTCT+TGG | 0.488703 | 8.3:-16513955 | MS.gene033195:CDS |
| AGGAACGGCGTCATCGGCGG+AGG | 0.501551 | 8.3:+16515002 | None:intergenic |
| TCCGGCGAATTCATGCTCTT+CGG | 0.514098 | 8.3:-16515162 | MS.gene033195:CDS |
| CCAAGAGTGAGTTCTTCCAT+TGG | 0.515535 | 8.3:+16513955 | None:intergenic |
| GAGCATGAATTCGCCGGAGA+CGG | 0.519327 | 8.3:+16515167 | None:intergenic |
| TTTCCTTCTCGTCCGATCAA+AGG | 0.521674 | 8.3:-16513786 | MS.gene033195:CDS |
| GACCCTCCAACACTTTCCCT+CGG | 0.522607 | 8.3:-16513811 | MS.gene033195:CDS |
| TTGGGATCTGAAACAACAAA+AGG | 0.525424 | 8.3:+16513880 | None:intergenic |
| TGGATCAGGGATTCCGTGGA+CGG | 0.525462 | 8.3:-16514850 | MS.gene033195:intron |
| TGATGATGTCTTCCTTTGAT+CGG | 0.527840 | 8.3:+16513774 | None:intergenic |
| ATGATGTTGTTGTTGTCTTG+AGG | 0.532951 | 8.3:+16515069 | None:intergenic |
| TTCTAGCTTCGGAGGCTGCA+GGG | 0.538337 | 8.3:+16514034 | None:intergenic |
| GGTGGTGATATCAAAGAGAC+TGG | 0.540239 | 8.3:+16514662 | None:intergenic |
| TTGTGCTCTTCCTCCGTCCA+CGG | 0.546086 | 8.3:+16514837 | None:intergenic |
| GGATTGCAGAAAGTTGGAAA+AGG | 0.553347 | 8.3:-16514801 | MS.gene033195:CDS |
| AGTCCGAGGGAAAGTGTTGG+AGG | 0.562456 | 8.3:+16513808 | None:intergenic |
| TTCGCGGTCGCGGTTTCTGG+CGG | 0.563265 | 8.3:+16514972 | None:intergenic |
| CATGAATTCGCCGGAGACGG+TGG | 0.565729 | 8.3:+16515170 | None:intergenic |
| TCAGGTATCTGCAATTCCAA+TGG | 0.575185 | 8.3:-16514097 | MS.gene033195:intron |
| CTTCCTTTGATCGGACGAGA+AGG | 0.575650 | 8.3:+16513783 | None:intergenic |
| GCCGGAGACGGTGGAGTCTG+CGG | 0.589898 | 8.3:+16515179 | None:intergenic |
| TTGAGGAACGGCGTCATCGG+CGG | 0.592610 | 8.3:+16514999 | None:intergenic |
| TATCAAAGAGACTGGATCTA+CGG | 0.592657 | 8.3:+16514670 | None:intergenic |
| CGTTAATGAGAGTACTCCAA+TGG | 0.593695 | 8.3:-16513971 | MS.gene033195:CDS |
| TCCGAAGAGCATGAATTCGC+CGG | 0.594213 | 8.3:+16515161 | None:intergenic |
| AGACAACAACAACATCATCA+AGG | 0.604820 | 8.3:-16515064 | MS.gene033195:CDS |
| AACAAAGACGTTATCACCGC+CGG | 0.612643 | 8.3:-16515030 | MS.gene033195:CDS |
| GTGATTGGAGAGGTATCTCA+AGG | 0.614661 | 8.3:-16514779 | MS.gene033195:CDS |
| AGAGGTGATGTCAGACACAA+TGG | 0.621851 | 8.3:+16513852 | None:intergenic |
| AATGGATGAACTGGAACTAG+AGG | 0.623042 | 8.3:+16513834 | None:intergenic |
| GAAGAACTCACTCTTGGACA+AGG | 0.624406 | 8.3:-16513949 | MS.gene033195:CDS |
| ATCGGCGGAGGCGTAACCGG+CGG | 0.626944 | 8.3:+16515014 | None:intergenic |
| CAGAAAAGTTACCGTGTCGG+TGG | 0.629241 | 8.3:+16514644 | None:intergenic |
| GGCGATTGAGATTACTTCGG+CGG | 0.629813 | 8.3:+16514697 | None:intergenic |
| CGCGACCGCGAACGTAAACG+AGG | 0.635630 | 8.3:-16514961 | MS.gene033195:intron |
| CTTTGATATCACCACCGACA+CGG | 0.638033 | 8.3:-16514655 | MS.gene033195:intron |
| GTCCGAGGGAAAGTGTTGGA+GGG | 0.638496 | 8.3:+16513809 | None:intergenic |
| GAAAGTCCGAGGGAAAGTGT+TGG | 0.638503 | 8.3:+16513805 | None:intergenic |
| TGCCAGAAAAGTTACCGTGT+CGG | 0.638678 | 8.3:+16514641 | None:intergenic |
| CGGACGAGAAGGAAAGTCCG+AGG | 0.639721 | 8.3:+16513794 | None:intergenic |
| GACGGCGATTGAGATTACTT+CGG | 0.641222 | 8.3:+16514694 | None:intergenic |
| GGTATCTGCAATTCCAATGG+AGG | 0.648622 | 8.3:-16514094 | MS.gene033195:CDS |
| GGACGAGAAGGAAAGTCCGA+GGG | 0.654533 | 8.3:+16513795 | None:intergenic |
| GTTGGAAAAGGTGATTGGAG+AGG | 0.659248 | 8.3:-16514789 | MS.gene033195:CDS |
| GGAGACGGTGGAGTCTGCGG+TGG | 0.660956 | 8.3:+16515182 | None:intergenic |
| ATCAGGGATTCCGTGGACGG+AGG | 0.665588 | 8.3:-16514847 | MS.gene033195:intron |
| GAAAACAAGAACACCTACGC+AGG | 0.669459 | 8.3:-16514748 | MS.gene033195:CDS |
| AGAGACTGGATCTACGGCGA+CGG | 0.684123 | 8.3:+16514676 | None:intergenic |
| GCATGACTTGCAACCTGCGT+AGG | 0.689624 | 8.3:+16514735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTGTG+TGG | - | chr8.3:16514470-16514489 | MS.gene033195:intron | 10.0% |
| !!! | TAATTTTCTCTCTTATTTAT+TGG | - | chr8.3:16514379-16514398 | MS.gene033195:intron | 15.0% |
| !! | AAGGAAACAAAAAAATAGAA+TGG | - | chr8.3:16514438-16514457 | MS.gene033195:intron | 20.0% |
| !! | AATGCTATTAAAGATTGTAA+AGG | - | chr8.3:16514419-16514438 | MS.gene033195:intron | 20.0% |
| !! | ATAAGATATATATCAACTCT+TGG | + | chr8.3:16514602-16514621 | None:intergenic | 20.0% |
| ! | AACTCATATACTGACATAAA+AGG | + | chr8.3:16514918-16514937 | None:intergenic | 25.0% |
| ! | AATTGGATTGAATAGATTGT+TGG | + | chr8.3:16515012-16515031 | None:intergenic | 25.0% |
| ! | AGATTTCTTTACAACTACAA+AGG | + | chr8.3:16514500-16514519 | None:intergenic | 25.0% |
| ! | GAAATCTAACAAAACTAGAA+TGG | - | chr8.3:16514513-16514532 | MS.gene033195:intron | 25.0% |
| ! | GAGAGTGATATAAGATTAAT+AGG | - | chr8.3:16514535-16514554 | MS.gene033195:intron | 25.0% |
| ! | TAATCAATAGAGTAGGATTA+TGG | - | chr8.3:16514338-16514357 | MS.gene033195:intron | 25.0% |
| ! | TAGTTACTAATCAATAGAGT+AGG | - | chr8.3:16514331-16514350 | MS.gene033195:intron | 25.0% |
| ! | TTTATGTCAGTATATGAGTT+GGG | - | chr8.3:16514918-16514937 | MS.gene033195:intron | 25.0% |
| !! | CTTATAATAGTTGATGTATC+TGG | - | chr8.3:16514617-16514636 | MS.gene033195:intron | 25.0% |
| !! | TTTTATGTCAGTATATGAGT+TGG | - | chr8.3:16514917-16514936 | MS.gene033195:intron | 25.0% |
| !!! | GTACTAAAAGTTGATGTATT+TGG | - | chr8.3:16514683-16514702 | MS.gene033195:CDS | 25.0% |
| !!! | GTGATTATCGTTATTGATTT+TGG | - | chr8.3:16514042-16514061 | MS.gene033195:CDS | 25.0% |
| !!! | TTATCTCCATTTTTGAAACA+TGG | + | chr8.3:16515182-16515201 | None:intergenic | 25.0% |
| AACAACTTTGTGTTTATGTC+AGG | - | chr8.3:16514797-16514816 | MS.gene033195:CDS | 30.0% | |
| ATGCATTTCAAAGAGTTTAC+TGG | - | chr8.3:16514576-16514595 | MS.gene033195:intron | 30.0% | |
| TTGTTTATACTTCGTAACAG+AGG | + | chr8.3:16514658-16514677 | None:intergenic | 30.0% | |
| ! | GATTGAATAGATTGTTGGTT+TGG | + | chr8.3:16515007-16515026 | None:intergenic | 30.0% |
| ! | TCTGAAACAACAAAAGGAAT+TGG | + | chr8.3:16515029-16515048 | None:intergenic | 30.0% |
| !!! | ATCGTTATTGATTTTGGATC+AGG | - | chr8.3:16514048-16514067 | MS.gene033195:CDS | 30.0% |
| !!! | TCCATTGATTTTTCTAGCTT+CGG | + | chr8.3:16514892-16514911 | None:intergenic | 30.0% |
| !!! | TCGTTATTGATTTTGGATCA+GGG | - | chr8.3:16514049-16514068 | MS.gene033195:CDS | 30.0% |
| AGAAAGTTGGAAAAGGTGAT+TGG | - | chr8.3:16514118-16514137 | MS.gene033195:intron | 35.0% | |
| AGACAACAACAACATCATCA+AGG | - | chr8.3:16513848-16513867 | MS.gene033195:CDS | 35.0% | |
| GCAATGCCATGTTTCAAAAA+TGG | - | chr8.3:16515173-16515192 | MS.gene033195:CDS | 35.0% | |
| TATCAAAGAGACTGGATCTA+CGG | + | chr8.3:16514245-16514264 | None:intergenic | 35.0% | |
| TCCGAAGCTAGAAAAATCAA+TGG | - | chr8.3:16514888-16514907 | MS.gene033195:intron | 35.0% | |
| TTCGATCAATCTCTTCAATC+TGG | - | chr8.3:16513980-16513999 | MS.gene033195:CDS | 35.0% | |
| ! | ATGATGTTGTTGTTGTCTTG+AGG | + | chr8.3:16513846-16513865 | None:intergenic | 35.0% |
| ! | TGATGATGTCTTCCTTTGAT+CGG | + | chr8.3:16515141-16515160 | None:intergenic | 35.0% |
| ! | TTGGGATCTGAAACAACAAA+AGG | + | chr8.3:16515035-16515054 | None:intergenic | 35.0% |
| !!! | ATTGATTTTTCTAGCTTCGG+AGG | + | chr8.3:16514889-16514908 | None:intergenic | 35.0% |
| AATGGATGAACTGGAACTAG+AGG | + | chr8.3:16515081-16515100 | None:intergenic | 40.0% | |
| AATTCCAATGGAGGAAGAAC+AGG | - | chr8.3:16514827-16514846 | MS.gene033195:CDS | 40.0% | |
| GGATTGCAGAAAGTTGGAAA+AGG | - | chr8.3:16514111-16514130 | MS.gene033195:intron | 40.0% | |
| TCAGACACAATGGAAGCTTT+GGG | + | chr8.3:16515053-16515072 | None:intergenic | 40.0% | |
| TCAGGTATCTGCAATTCCAA+TGG | - | chr8.3:16514815-16514834 | MS.gene033195:CDS | 40.0% | |
| TTGGTTGGATTGCAGAAAGT+TGG | - | chr8.3:16514105-16514124 | MS.gene033195:intron | 40.0% | |
| !! | CGTTAATGAGAGTACTCCAA+TGG | - | chr8.3:16514941-16514960 | MS.gene033195:intron | 40.0% |
| AACAAAGACGTTATCACCGC+CGG | - | chr8.3:16513882-16513901 | MS.gene033195:CDS | 45.0% | |
| AGAGGTGATGTCAGACACAA+TGG | + | chr8.3:16515063-16515082 | None:intergenic | 45.0% | |
| CCAAGAGTGAGTTCTTCCAT+TGG | + | chr8.3:16514960-16514979 | None:intergenic | 45.0% | |
| CCAATGGAAGAACTCACTCT+TGG | - | chr8.3:16514957-16514976 | MS.gene033195:intron | 45.0% | |
| CTTTGATATCACCACCGACA+CGG | - | chr8.3:16514257-16514276 | MS.gene033195:intron | 45.0% | |
| GAAAACAAGAACACCTACGC+AGG | - | chr8.3:16514164-16514183 | MS.gene033195:intron | 45.0% | |
| GAAGAACTCACTCTTGGACA+AGG | - | chr8.3:16514963-16514982 | MS.gene033195:CDS | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | + | chr8.3:16514221-16514240 | None:intergenic | 45.0% | |
| GGTATCTGCAATTCCAATGG+AGG | - | chr8.3:16514818-16514837 | MS.gene033195:CDS | 45.0% | |
| GGTGGTGATATCAAAGAGAC+TGG | + | chr8.3:16514253-16514272 | None:intergenic | 45.0% | |
| GTCAGACACAATGGAAGCTT+TGG | + | chr8.3:16515054-16515073 | None:intergenic | 45.0% | |
| GTTGGAAAAGGTGATTGGAG+AGG | - | chr8.3:16514123-16514142 | MS.gene033195:intron | 45.0% | |
| TGCCAGAAAAGTTACCGTGT+CGG | + | chr8.3:16514274-16514293 | None:intergenic | 45.0% | |
| TTGACCTGTTCTTCCTCCAT+TGG | + | chr8.3:16514834-16514853 | None:intergenic | 45.0% | |
| TTTCCTTCTCGTCCGATCAA+AGG | - | chr8.3:16515126-16515145 | MS.gene033195:CDS | 45.0% | |
| ! | ATTTTGGATCAGGGATTCCG+TGG | - | chr8.3:16514058-16514077 | MS.gene033195:CDS | 45.0% |
| !! | GTGATTGGAGAGGTATCTCA+AGG | - | chr8.3:16514133-16514152 | MS.gene033195:intron | 45.0% |
| CAGAAAAGTTACCGTGTCGG+TGG | + | chr8.3:16514271-16514290 | None:intergenic | 50.0% | |
| CTTCCTTTGATCGGACGAGA+AGG | + | chr8.3:16515132-16515151 | None:intergenic | 50.0% | |
| GAGCACAAGCTGTTCTTGGT+TGG | - | chr8.3:16514090-16514109 | MS.gene033195:CDS | 50.0% | |
| GGCGATTGAGATTACTTCGG+CGG | + | chr8.3:16514218-16514237 | None:intergenic | 50.0% | |
| TCCGGCGAATTCATGCTCTT+CGG | - | chr8.3:16513750-16513769 | MS.gene033195:CDS | 50.0% | |
| TCGAACCTCGTTTACGTTCG+CGG | + | chr8.3:16513959-16513978 | None:intergenic | 50.0% | |
| TGGAGGGTCAATGGATGAAC+TGG | + | chr8.3:16515090-16515109 | None:intergenic | 50.0% | |
| ! | CACCGACACGGTAACTTTTC+TGG | - | chr8.3:16514269-16514288 | MS.gene033195:intron | 50.0% |
| ! | GAAAGTCCGAGGGAAAGTGT+TGG | + | chr8.3:16515110-16515129 | None:intergenic | 50.0% |
| ! | GGAAGAGCACAAGCTGTTCT+TGG | - | chr8.3:16514086-16514105 | MS.gene033195:CDS | 50.0% |
| ! | TCCGAAGAGCATGAATTCGC+CGG | + | chr8.3:16513754-16513773 | None:intergenic | 50.0% |
| !! | GGAAAGTGTTGGAGGGTCAA+TGG | + | chr8.3:16515099-16515118 | None:intergenic | 50.0% |
| !!! | GTTTTGAGGAACGGCGTCAT+CGG | + | chr8.3:16513919-16513938 | None:intergenic | 50.0% |
| !!! | TCTGGCGGAGTTTTGAGGAA+CGG | + | chr8.3:16513928-16513947 | None:intergenic | 50.0% |
| AGAGACTGGATCTACGGCGA+CGG | + | chr8.3:16514239-16514258 | None:intergenic | 55.0% | |
| GACCCTCCAACACTTTCCCT+CGG | - | chr8.3:16515101-16515120 | MS.gene033195:CDS | 55.0% | |
| GAGCATGAATTCGCCGGAGA+CGG | + | chr8.3:16513748-16513767 | None:intergenic | 55.0% | |
| GGACGAGAAGGAAAGTCCGA+GGG | + | chr8.3:16515120-16515139 | None:intergenic | 55.0% | |
| TGGATCAGGGATTCCGTGGA+CGG | - | chr8.3:16514062-16514081 | MS.gene033195:CDS | 55.0% | |
| TTGTGCTCTTCCTCCGTCCA+CGG | + | chr8.3:16514078-16514097 | None:intergenic | 55.0% | |
| ! | GCATGACTTGCAACCTGCGT+AGG | + | chr8.3:16514180-16514199 | None:intergenic | 55.0% |
| !! | AGTCCGAGGGAAAGTGTTGG+AGG | + | chr8.3:16515107-16515126 | None:intergenic | 55.0% |
| !! | GTCCGAGGGAAAGTGTTGGA+GGG | + | chr8.3:16515106-16515125 | None:intergenic | 55.0% |
| !! | TTCTAGCTTCGGAGGCTGCA+GGG | + | chr8.3:16514881-16514900 | None:intergenic | 55.0% |
| !! | TTTCTAGCTTCGGAGGCTGC+AGG | + | chr8.3:16514882-16514901 | None:intergenic | 55.0% |
| !!! | CGGTTTCTGGCGGAGTTTTG+AGG | + | chr8.3:16513933-16513952 | None:intergenic | 55.0% |
| ATCAGGGATTCCGTGGACGG+AGG | - | chr8.3:16514065-16514084 | MS.gene033195:CDS | 60.0% | |
| CATGAATTCGCCGGAGACGG+TGG | + | chr8.3:16513745-16513764 | None:intergenic | 60.0% | |
| CGGACGAGAAGGAAAGTCCG+AGG | + | chr8.3:16515121-16515140 | None:intergenic | 60.0% | |
| CTCGTTTACGTTCGCGGTCG+CGG | + | chr8.3:16513953-16513972 | None:intergenic | 60.0% | |
| TTGAGGAACGGCGTCATCGG+CGG | + | chr8.3:16513916-16513935 | None:intergenic | 60.0% | |
| ACCGCAGACTCCACCGTCTC+CGG | - | chr8.3:16513732-16513751 | MS.gene033195:CDS | 65.0% | |
| ACGTTCGCGGTCGCGGTTTC+TGG | + | chr8.3:16513946-16513965 | None:intergenic | 65.0% | |
| CGCGACCGCGAACGTAAACG+AGG | - | chr8.3:16513951-16513970 | MS.gene033195:CDS | 65.0% | |
| ! | GTCATCGGCGGAGGCGTAAC+CGG | + | chr8.3:16513904-16513923 | None:intergenic | 65.0% |
| ! | TTCGCGGTCGCGGTTTCTGG+CGG | + | chr8.3:16513943-16513962 | None:intergenic | 65.0% |
| AGGAACGGCGTCATCGGCGG+AGG | + | chr8.3:16513913-16513932 | None:intergenic | 70.0% | |
| GCCGGAGACGGTGGAGTCTG+CGG | + | chr8.3:16513736-16513755 | None:intergenic | 70.0% | |
| GGAGACGGTGGAGTCTGCGG+TGG | + | chr8.3:16513733-16513752 | None:intergenic | 70.0% | |
| ! | ATCGGCGGAGGCGTAACCGG+CGG | + | chr8.3:16513901-16513920 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16513714 | 16515220 | 16513714 | ID=MS.gene033195 |
| chr8.3 | mRNA | 16513714 | 16515220 | 16513714 | ID=MS.gene033195.t1;Parent=MS.gene033195 |
| chr8.3 | exon | 16514962 | 16515220 | 16514962 | ID=MS.gene033195.t1.exon1;Parent=MS.gene033195.t1 |
| chr8.3 | CDS | 16514962 | 16515220 | 16514962 | ID=cds.MS.gene033195.t1;Parent=MS.gene033195.t1 |
| chr8.3 | exon | 16514656 | 16514864 | 16514656 | ID=MS.gene033195.t1.exon2;Parent=MS.gene033195.t1 |
| chr8.3 | CDS | 16514656 | 16514864 | 16514656 | ID=cds.MS.gene033195.t1;Parent=MS.gene033195.t1 |
| chr8.3 | exon | 16513714 | 16514115 | 16513714 | ID=MS.gene033195.t1.exon3;Parent=MS.gene033195.t1 |
| chr8.3 | CDS | 16513714 | 16514115 | 16513714 | ID=cds.MS.gene033195.t1;Parent=MS.gene033195.t1 |
| Gene Sequence |
| Protein sequence |
