AlfalfaGEDB | MS.gene033205

M. sativa cultivar XinJiangDaYe / MS.gene033205

KEGG: K09391
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005667 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02319.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033205.t1	AES91128.2	98.3	358	5	1	1	357	1	358	2.10E-166	595.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033205.t1	Q8LSZ4	55.2	364	135	9	5	355	22	370	5.8e-80	299.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033205.t1	G7JNS6	98.3	358	5	1	1	357	1	358	1.5e-166	595.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene033205.t1	TF	E2F-DP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033205.t1	MTR_4g106540	98.324	358	5	1	1	357	1	358	0.0	727
MS.gene033205.t1	MTR_4g106540	98.039	357	6	1	1	356	1	357	0.0	724
MS.gene033205.t1	MTR_4g106540	96.429	364	6	2	1	357	1	364	0.0	718
MS.gene033205.t1	MTR_4g106540	97.935	339	6	1	1	338	1	339	0.0	680
MS.gene033205.t1	MTR_4g106540	95.942	345	7	2	1	338	1	345	0.0	671
MS.gene033205.t1	MTR_3g113800	46.377	69	37	0	14	82	99	167	1.08e-11	65.5
MS.gene033205.t1	MTR_3g113800	46.377	69	37	0	14	82	99	167	1.33e-11	65.5
MS.gene033205.t1	MTR_4g052000	44.776	67	37	0	17	83	138	204	1.44e-11	65.9
MS.gene033205.t1	MTR_1g105110	44.776	67	37	0	17	83	142	208	3.49e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033205.t1	AT3G48160	55.000	360	130	12	12	356	29	371	2.09e-112	332
MS.gene033205.t1	AT3G48160	54.469	358	133	11	12	355	29	370	1.98e-110	328
MS.gene033205.t1	AT3G01330	47.813	343	150	5	13	355	17	330	1.34e-95	288
MS.gene033205.t1	AT5G14960	41.761	352	169	9	13	354	9	334	7.84e-80	248
MS.gene033205.t1	AT5G14960	37.915	211	114	6	154	354	38	241	2.80e-34	127
MS.gene033205.t1	AT5G22220	44.776	67	37	0	17	83	129	195	4.63e-11	64.3
MS.gene033205.t1	AT5G22220	44.776	67	37	0	17	83	129	195	4.95e-11	64.3

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Find 84 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAGACATTGAATG+AGG	0.592429	8.3:+16682140	MS.gene033205:CDS
AAACCAGCATTCAGGTGGCT+AGG	0.559723	8.3:+16682114	MS.gene033205:CDS
AAAGACGATGTTCGTTTAAT+TGG	0.211016	8.3:+16679812	MS.gene033205:CDS
AAATGATAGTGGGCTATGTC+TGG	0.446224	8.3:+16682296	MS.gene033205:CDS
AACAAAACGATTCTAGGAAA+AGG	0.426966	8.3:+16682181	MS.gene033205:CDS
AAGAATCAGTATACCTGGAA+AGG	0.546799	8.3:+16680135	MS.gene033205:CDS
AAGACAATGGAAAATGATAG+TGG	0.463413	8.3:+16682285	MS.gene033205:CDS
AAGCCAAGAATCAGTATACC+TGG	0.526713	8.3:+16680130	MS.gene033205:CDS
AAGCCTAGCCACCTGAATGC+TGG	0.489317	8.3:-16682117	None:intergenic
AAGTGAAGCAGGTGCATGAC+TGG	0.407996	8.3:+16682415	MS.gene033205:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACGATGTTCGTTTAAT+TGG	+	chr8.3:16679812-16679831	MS.gene033205:CDS	30.0%
AACAGTTGTTAATGATGTTC+AGG	+	chr8.3:16679932-16679951	MS.gene033205:intron	30.0%
AACCCCAAGTTAACTAAATA+AGG	+	chr8.3:16681021-16681040	MS.gene033205:intron	30.0%
AAGACAATGGAAAATGATAG+TGG	+	chr8.3:16682285-16682304	MS.gene033205:CDS	30.0%
AATCTCAATTCTTCACAAGA+AGG	+	chr8.3:16680319-16680338	MS.gene033205:CDS	30.0%
ACATGAGGGAACAAAAATTA+AGG	-	chr8.3:16680034-16680053	None:intergenic	30.0%
ACCCCAAGTTAACTAAATAA+GGG	+	chr8.3:16681022-16681041	MS.gene033205:intron	30.0%
ACTTCAGCTAACTATCAATT+TGG	+	chr8.3:16682345-16682364	MS.gene033205:CDS	30.0%
AGACAATGGAAAATGATAGT+GGG	+	chr8.3:16682286-16682305	MS.gene033205:CDS	30.0%
AGTATATTACCTTCTCGATA+AGG	-	chr8.3:16681944-16681963	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	16679620	16682488	16679620	ID=MS.gene033205
chr8.3	mRNA	16679620	16682488	16679620	ID=MS.gene033205.t1;Parent=MS.gene033205
chr8.3	exon	16679620	16679702	16679620	ID=MS.gene033205.t1.exon1;Parent=MS.gene033205.t1
chr8.3	CDS	16679620	16679702	16679620	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16679793	16679860	16679793	ID=MS.gene033205.t1.exon2;Parent=MS.gene033205.t1
chr8.3	CDS	16679793	16679860	16679793	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16679954	16680006	16679954	ID=MS.gene033205.t1.exon3;Parent=MS.gene033205.t1
chr8.3	CDS	16679954	16680006	16679954	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16680117	16680194	16680117	ID=MS.gene033205.t1.exon4;Parent=MS.gene033205.t1
chr8.3	CDS	16680117	16680194	16680117	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16680301	16680360	16680301	ID=MS.gene033205.t1.exon5;Parent=MS.gene033205.t1
chr8.3	CDS	16680301	16680360	16680301	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16680449	16680584	16680449	ID=MS.gene033205.t1.exon6;Parent=MS.gene033205.t1
chr8.3	CDS	16680449	16680584	16680449	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16681545	16681609	16681545	ID=MS.gene033205.t1.exon7;Parent=MS.gene033205.t1
chr8.3	CDS	16681545	16681609	16681545	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16681723	16681795	16681723	ID=MS.gene033205.t1.exon8;Parent=MS.gene033205.t1
chr8.3	CDS	16681723	16681795	16681723	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16681892	16681953	16681892	ID=MS.gene033205.t1.exon9;Parent=MS.gene033205.t1
chr8.3	CDS	16681892	16681953	16681892	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1
chr8.3	exon	16682093	16682488	16682093	ID=MS.gene033205.t1.exon10;Parent=MS.gene033205.t1
chr8.3	CDS	16682093	16682488	16682093	ID=cds.MS.gene033205.t1;Parent=MS.gene033205.t1

Gene Sequence

>MS.gene033205

ATGGCTGCTTCTTCCTCCGATCCTCCTTCACGACACCACACTTACGATCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAAGTAAGTGTTACTCTTACTCTTCTTCTCTTCTCTCTCTCACTTAATTCTTTTATTCACTAATTATTTATTGATTCGGTTTATGAATTGCAGTTTCTTGAGCTTGTATAACAAAGACGATGTTCGTTTAATTGGTCTCGACGATGCTGCCGCCAAATTAGGTATTCATTATTACGATTCACTTTTTAGTTTTTTAATTTAAAAATAAAATAAAACAAATTGGATCTAATACAACAGTTGTTAATGATGTTCAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTCGAAAGCATCGGGGTTCGTTTATTTTTTATTTTTTAACCTTAATTTTTGTTCCCTCATGTTCCCACCTCTTTTTTTTATTAATTTTTGTTCATCGGTTTTTTATTTTGTTTGGTTTTTTTTAGGTTCTTGCAAGAAAAGCCAAGAATCAGTATACCTGGAAAGGTTTTGCGGCAATTCCTGTTGCTTTACAGGAGCTTAAGGTAATTTCAAATTTTAGGATTCAGTTCCTTCTTAATTTAAATTCTGTGATTCAATAATTGTAATTTATTTTTTATGTAATTGTTTTGATTTTGAATGGGTTTTTAGGAAGAGGGTTTATGGCAGAATCTCAATTCTTCACAAGAAGGTGGCAATGAAGATGTGAAGGTGAGTTCTATTTTCACATACATAATTTATTTTTATGAGAAGTATAATTGGTTTAGTAGGGTTGTTTTTAAGTACTTTCGTGATTTAGGTATCGGATGAAGAGGATGAGGACGAATTGTTATCCCAAACCACTGGAAGTCAGGGTGAATCACTATCCCAACCCACTGGAAGTCAGAATGACAATCTAAACCCTAATTCAACTTTTCCCAGATCTTTGAAAAATGGTAACTTTTTTATTTTGGGTACAAACATGTTTAAGATTTATGAACCTGTGTTTTTGCTGGTGTTGTTGTTGTGGTATATGATGTTTGTTCTGTCTTGTAATGTTTTACTAAAAAACCATATTTACAGTTTATTCTTCTAAATGCATTATAGGTCAGTAGATTATTTTGTTTTTCTTCAAATTTTGGGTCACTGAATTAGCCTTTTAATGATTTAAAAATATCATCATAATTTTGATTTTTTAAGAAAAACTAGAGTAGAGTGGCGATAATTTGAATTTTTGAGGAACTACTTTAGTAGCAGAATTTTTGAAACATGGGTTTGGAACAAACTTTTATAACTTAAGTTTTAGCCAACTTTAATTTGCAAATTGCAAAAACAATTCTCTCTGCATACTATTAATAATTATGTTTGATGACAAAAAATGTGTTTTTAAATAACCCCAAGTTAACTAAATAAGGGTTCAATCCAATTTTGCTGGGTAAGCATAGGTCGAGGGGTCTTTAACCTCAGTCTACACACACATTAATACGTTGTGGGTTATAGTTTTAAGGTGCTATTGTACTCTACCTTAATCTAAACAAACACTTGGTTGTTAGAGTTTTCTTCTACATATTGTATGCCATACCTGTATTATGTCTTTTGTGCACGATTGCGAGAGATTTATTTTTACTTTTGTATCCTCAGAACAATCCCAATTCTCATCAGATTGTTCAAGTTTTTAGGATGTTTTCTTTTCTTAGGGTTAGGAATACCATTTACATTCGAACAAAACAACTTTTAATATCGTATGATACTGTTAGTGATTATGACTGTTATTAGCACCAGAGAATGATAATTTAGTTAAAGATGTGCACGGATACCATTGTTTATTGAATTTTATAATACTGGAGTCGTATGTGGACTTAGACTTGGCACTGATTGCATTTTGAGGCTCACTTTTCTACTTTAATGTTTTGCAGACAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGTTCTAACGTGAGAATTGCCTAGTTTCTTGTTCATTCCAAGCTGATTTATGTCTTTAATATCCATGCCATACATCTGATATGTTAAACTTGTTGACTAACGATAACCACTCTACTCTGCAGCTGGAAATGATATCCCTTGATGATGCAGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAAGTAAGTAATATAAAATGAATTACCAATTTGTTTGTTTTCGTTAACAAAAGAGTCAGCAACGAATCTTTTCACTTACAGTCCCATCTGGCCTTGCAGCAAAAGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATCGAGAAGGTAATATACTCCTTACACTTTTCATTTTATATTTTTTATTTGTTCAAATTTACTAGTAAATAGTAGTGAGAATGAGTTTCACATTTCCTCTTTGCATTGATTTCTTTATTGATTATTGTCACTCTACAAAATGATGCAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATTGAATGAGGCATCACTTTACAATTCAAAACAAAACGATTCTAGGAAAAGGGCGTTTGGAAATGATGTCACAAACATAAGCTTTGCCAGGAATAGAACAGACTTGTTCATGGGTGGTGACTTTAAGAAGCAAAAGACAATGGAAAATGATAGTGGGCTATGTCTGGAAGATGTGAAACAAGGCATAAAACAGACTTCAGCTAACTATCAATTTGGTCCTTTCGCTCCTGCCTTTGTATCCAAAGCTGGAAGCTCTGAGAATAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTACTGAACATTGCCCTCAGTATCAAAACCAAGGCAATTAA

Protein sequence

>MS.gene033205.t1

MAASSSDPPSRHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGGNEDVKVSDEEDEDELLSQTTGSQGESLSQPTGSQNDNLNPNSTFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNEASLYNSKQNDSRKRAFGNDVTNISFARNRTDLFMGGDFKKQKTMENDSGLCLEDVKQGIKQTSANYQFGPFAPAFVSKAGSSENKVKQVHDWESLATEHCPQYQNQGN