Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033219.t1 | XP_003608956.1 | 95.6 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 5.40E-102 | 380.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033219.t1 | Q94JX5 | 69.1 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 2.3e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033219.t1 | G7JNV0 | 95.6 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 3.9e-102 | 380.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033219.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033219.t1 | MTR_4g106800 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 2.98e-130 | 362 |
| MS.gene033219.t1 | MTR_1g017950 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 4.07e-89 | 259 |
| MS.gene033219.t1 | MTR_3g070050 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 5.56e-69 | 208 |
| MS.gene033219.t1 | MTR_8g097300 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 6.65e-62 | 191 |
| MS.gene033219.t1 | MTR_8g097300 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 7.60e-20 | 83.2 |
| MS.gene033219.t1 | MTR_8g031490 | 50.838 | 179 | 75 | 2 | 3 | 177 | 2 | 171 | 1.25e-60 | 187 |
| MS.gene033219.t1 | MTR_7g076720 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 5.18e-58 | 181 |
| MS.gene033219.t1 | MTR_7g076720 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 2.46e-15 | 71.2 |
| MS.gene033219.t1 | MTR_7g076720 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 3.68e-15 | 70.9 |
| MS.gene033219.t1 | MTR_3g070050 | 49.286 | 140 | 66 | 3 | 45 | 181 | 2 | 139 | 1.10e-44 | 145 |
| MS.gene033219.t1 | MTR_3g070050 | 44.944 | 89 | 48 | 1 | 4 | 92 | 61 | 148 | 6.35e-20 | 81.6 |
| MS.gene033219.t1 | MTR_1g106100 | 47.748 | 111 | 51 | 2 | 60 | 168 | 20 | 125 | 4.14e-32 | 113 |
| MS.gene033219.t1 | MTR_3g070033 | 50.847 | 59 | 29 | 0 | 123 | 181 | 6 | 64 | 1.73e-18 | 75.9 |
| MS.gene033219.t1 | MTR_3g070033 | 43.478 | 69 | 38 | 1 | 24 | 92 | 6 | 73 | 1.49e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033219.t1 | AT1G10200 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.64e-90 | 263 |
| MS.gene033219.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene033219.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene033219.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene033219.t1 | AT3G55770 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.06e-71 | 214 |
| MS.gene033219.t1 | AT2G39900 | 53.631 | 179 | 83 | 0 | 3 | 181 | 2 | 180 | 7.68e-70 | 211 |
| MS.gene033219.t1 | AT3G61230 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 5.89e-67 | 204 |
| MS.gene033219.t1 | AT3G61230 | 40.659 | 91 | 54 | 0 | 4 | 94 | 100 | 190 | 1.22e-17 | 77.4 |
| MS.gene033219.t1 | AT3G61230 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 5.35e-16 | 73.2 |
| MS.gene033219.t1 | AT3G55770 | 47.664 | 214 | 75 | 3 | 3 | 181 | 2 | 213 | 1.68e-63 | 196 |
| MS.gene033219.t1 | AT2G45800 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 5.66e-63 | 194 |
| MS.gene033219.t1 | AT2G45800 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 9.08e-18 | 78.2 |
| MS.gene033219.t1 | AT2G45800 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.10e-16 | 75.1 |
| MS.gene033219.t1 | AT1G01780 | 52.047 | 171 | 77 | 2 | 3 | 173 | 2 | 167 | 6.37e-63 | 193 |
| MS.gene033219.t1 | AT1G01780 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.88e-17 | 76.3 |
| MS.gene033219.t1 | AT1G10200 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.44e-62 | 190 |
| MS.gene033219.t1 | AT1G10200 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.76e-16 | 72.4 |
| MS.gene033219.t1 | AT3G55770 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.17e-43 | 142 |
| MS.gene033219.t1 | AT3G55770 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.84e-18 | 77.4 |
| MS.gene033219.t1 | AT2G45800 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.40e-42 | 141 |
| MS.gene033219.t1 | AT2G45800 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.30e-18 | 78.6 |
| MS.gene033219.t1 | AT3G55770 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.39e-40 | 134 |
| MS.gene033219.t1 | AT3G55770 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 1.79e-18 | 77.8 |
Find 31 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | 8.3:+16840130 | MS.gene033219:CDS |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | 8.3:-16840123 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8.3:+16838771 | MS.gene033219:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8.3:+16836933 | None:intergenic |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | 8.3:+16836976 | MS.gene033219:CDS |
| TTGAAACCTTGTTATATGCT+TGG | 0.394784 | 8.3:-16839057 | None:intergenic |
| CATGGTGATGTCTACAATAA+AGG | 0.396225 | 8.3:-16840069 | None:intergenic |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8.3:-16840040 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | 8.3:+16840114 | MS.gene033219:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8.3:+16839990 | MS.gene033219:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | 8.3:+16838946 | MS.gene033219:CDS |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8.3:+16838763 | MS.gene033219:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | 8.3:+16839123 | MS.gene033219:CDS |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8.3:-16838754 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8.3:-16839994 | None:intergenic |
| TGCTCAGATCTTCAAACAGA+AGG | 0.527238 | 8.3:+16840090 | MS.gene033219:CDS |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8.3:+16837043 | MS.gene033219:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | 8.3:-16837052 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8.3:+16840001 | MS.gene033219:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8.3:+16837044 | MS.gene033219:CDS |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | 8.3:+16840131 | MS.gene033219:CDS |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | 8.3:-16837055 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | 8.3:+16836977 | MS.gene033219:CDS |
| TCTGTTTGAAGATCTGAGCA+TGG | 0.621276 | 8.3:-16840087 | None:intergenic |
| GCTCAGATCTTCAAACAGAA+GGG | 0.622874 | 8.3:+16840091 | MS.gene033219:CDS |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8.3:+16840033 | MS.gene033219:CDS |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | 8.3:+16837055 | MS.gene033219:CDS |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8.3:+16840004 | MS.gene033219:CDS |
| ACAGGTCCAAGCATATAACA+AGG | 0.699921 | 8.3:+16839051 | MS.gene033219:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | 8.3:+16836980 | MS.gene033219:CDS |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | 8.3:-16837031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAATAATGTATTT+AGG | - | chr8.3:16838172-16838191 | None:intergenic | 10.0% |
| !! | AGTTAGTATTTAATTAATTA+AGG | + | chr8.3:16839593-16839612 | MS.gene033219:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | + | chr8.3:16838504-16838523 | MS.gene033219:intron | 10.0% |
| !! | GTTAGTATTTAATTAATTAA+GGG | + | chr8.3:16839594-16839613 | MS.gene033219:intron | 10.0% |
| !!! | TAATTCTTTACTTTTTATTT+TGG | + | chr8.3:16837212-16837231 | MS.gene033219:intron | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | + | chr8.3:16838375-16838394 | MS.gene033219:intron | 10.0% |
| !! | AAAAGTTCTATAACAATATT+TGG | - | chr8.3:16838412-16838431 | None:intergenic | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | - | chr8.3:16839416-16839435 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAAAGATGAGA+AGG | - | chr8.3:16839325-16839344 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | + | chr8.3:16839262-16839281 | MS.gene033219:intron | 15.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | + | chr8.3:16837164-16837183 | MS.gene033219:intron | 15.0% |
| !! | TTTGAAAAAATGACATAATT+CGG | + | chr8.3:16839785-16839804 | MS.gene033219:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | + | chr8.3:16837894-16837913 | MS.gene033219:intron | 15.0% |
| !!! | AATATATATACCTTTTCAAT+TGG | - | chr8.3:16839136-16839155 | None:intergenic | 15.0% |
| !!! | ATATATATACCTTTTCAATT+GGG | - | chr8.3:16839135-16839154 | None:intergenic | 15.0% |
| !!! | ATGGTAACAATATTTTATAA+AGG | - | chr8.3:16837630-16837649 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | - | chr8.3:16838051-16838070 | None:intergenic | 15.0% |
| !!! | TGGTAACAATATTTTATAAA+GGG | - | chr8.3:16837629-16837648 | None:intergenic | 15.0% |
| !!! | TTGTTACTTAGATATAATAT+GGG | - | chr8.3:16839647-16839666 | None:intergenic | 15.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | - | chr8.3:16837193-16837212 | None:intergenic | 20.0% |
| !! | AATTAAACTGCAATGTAATT+GGG | - | chr8.3:16837438-16837457 | None:intergenic | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | - | chr8.3:16838898-16838917 | None:intergenic | 20.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | - | chr8.3:16837088-16837107 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | - | chr8.3:16837194-16837213 | None:intergenic | 20.0% |
| !!! | CTTGTTACTTAGATATAATA+TGG | - | chr8.3:16839648-16839667 | None:intergenic | 20.0% |
| !!! | GGTAACAATATTTTATAAAG+GGG | - | chr8.3:16837628-16837647 | None:intergenic | 20.0% |
| !!! | TACTTTTTATTTTGGATGAA+TGG | + | chr8.3:16837220-16837239 | MS.gene033219:intron | 20.0% |
| !!! | TCCTATGTTTTTTACATTAA+CGG | + | chr8.3:16838535-16838554 | MS.gene033219:intron | 20.0% |
| ! | AAAAATTGAACCGAATTGAA+TGG | + | chr8.3:16837365-16837384 | MS.gene033219:intron | 25.0% |
| ! | AAATAAAGATGAGAAGGATA+AGG | - | chr8.3:16839319-16839338 | None:intergenic | 25.0% |
| ! | AACACAAATTGTCCAATATA+TGG | + | chr8.3:16839691-16839710 | MS.gene033219:intron | 25.0% |
| ! | ACCGTTAATGTAAAAAACAT+AGG | - | chr8.3:16838539-16838558 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | + | chr8.3:16839931-16839950 | MS.gene033219:intron | 25.0% |
| ! | ATATATTGGACAATTTGTGT+TGG | - | chr8.3:16839692-16839711 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | + | chr8.3:16839239-16839258 | MS.gene033219:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | - | chr8.3:16839931-16839950 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | + | chr8.3:16836977-16836996 | MS.gene033219:CDS | 25.0% |
| ! | ATTGCAGTTTAATTGAACTA+AGG | + | chr8.3:16837444-16837463 | MS.gene033219:intron | 25.0% |
| ! | CAATTAAACTGCAATGTAAT+TGG | - | chr8.3:16837439-16837458 | None:intergenic | 25.0% |
| ! | CATAAGTGTTATATATGTGT+CGG | - | chr8.3:16838221-16838240 | None:intergenic | 25.0% |
| ! | CTAGTAACTAATAATGTAAC+AGG | + | chr8.3:16839033-16839052 | MS.gene033219:intron | 25.0% |
| ! | GAAATATACATAAAATGAGC+TGG | + | chr8.3:16839522-16839541 | MS.gene033219:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | + | chr8.3:16839932-16839951 | MS.gene033219:intron | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | + | chr8.3:16838905-16838924 | MS.gene033219:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | + | chr8.3:16840114-16840133 | MS.gene033219:CDS | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | - | chr8.3:16839244-16839263 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | - | chr8.3:16839581-16839600 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | - | chr8.3:16839353-16839372 | None:intergenic | 25.0% |
| ! | TTGATTCAACTATAATTGAC+CGG | + | chr8.3:16837561-16837580 | MS.gene033219:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+TGG | - | chr8.3:16839772-16839791 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | + | chr8.3:16838715-16838734 | MS.gene033219:CDS | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | - | chr8.3:16838757-16838776 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | - | chr8.3:16839198-16839217 | None:intergenic | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | - | chr8.3:16839197-16839216 | None:intergenic | 25.0% |
| AAATCAATCGACAAACTAAC+AGG | - | chr8.3:16837412-16837431 | None:intergenic | 30.0% | |
| ACATGTCATACGAATGTTAT+AGG | - | chr8.3:16838136-16838155 | None:intergenic | 30.0% | |
| ACCGAATTGAATGGTTTAAT+CGG | + | chr8.3:16837374-16837393 | MS.gene033219:intron | 30.0% | |
| ACCGATTAAACCATTCAATT+CGG | - | chr8.3:16837378-16837397 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | - | chr8.3:16839013-16839032 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | - | chr8.3:16839015-16839034 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | + | chr8.3:16839553-16839572 | MS.gene033219:intron | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | + | chr8.3:16836976-16836995 | MS.gene033219:CDS | 30.0% | |
| CCAAAATAGTGGTTATAAGT+GGG | - | chr8.3:16837853-16837872 | None:intergenic | 30.0% | |
| CTTGTTCAACCTTATCAAAT+TGG | - | chr8.3:16840126-16840145 | None:intergenic | 30.0% | |
| GAACAATCCCAATGAATATA+TGG | - | chr8.3:16839942-16839961 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | - | chr8.3:16839014-16839033 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | - | chr8.3:16839444-16839463 | None:intergenic | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | + | chr8.3:16838322-16838341 | MS.gene033219:intron | 30.0% | |
| TTAAGCAATAACCATGTAGT+AGG | - | chr8.3:16838825-16838844 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | + | chr8.3:16838321-16838340 | MS.gene033219:intron | 30.0% | |
| TTTATAAAGGGGATAAGAGA+TGG | - | chr8.3:16837617-16837636 | None:intergenic | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | + | chr8.3:16837112-16837131 | MS.gene033219:intron | 30.0% | |
| TTTGCACATCTTTACTCTTT+AGG | + | chr8.3:16837746-16837765 | MS.gene033219:intron | 30.0% | |
| ! | CTTCATATCTGGAATATGAT+AGG | + | chr8.3:16839883-16839902 | MS.gene033219:intron | 30.0% |
| ! | GAGTAACTATTGTTCTTTTG+AGG | + | chr8.3:16838714-16838733 | MS.gene033219:CDS | 30.0% |
| ! | TCAGTATATTTTCAGAACTG+AGG | + | chr8.3:16838018-16838037 | MS.gene033219:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | - | chr8.3:16839216-16839235 | None:intergenic | 30.0% |
| ! | TTGAAACCTTGTTATATGCT+TGG | - | chr8.3:16839060-16839079 | None:intergenic | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | + | chr8.3:16838787-16838806 | MS.gene033219:CDS | 30.0% |
| !! | TCAGTTCTGAAAATATACTG+AGG | - | chr8.3:16838019-16838038 | None:intergenic | 30.0% |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | + | chr8.3:16839070-16839089 | MS.gene033219:CDS | 30.0% |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | + | chr8.3:16839949-16839968 | MS.gene033219:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | + | chr8.3:16839208-16839227 | MS.gene033219:intron | 30.0% |
| AAAAATTTGCAGGTGCCTAA+TGG | - | chr8.3:16839571-16839590 | None:intergenic | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | + | chr8.3:16839123-16839142 | MS.gene033219:CDS | 35.0% | |
| AATCAGTCCATCAAACTATG+TGG | + | chr8.3:16840033-16840052 | MS.gene033219:CDS | 35.0% | |
| ACATCTTTACTCTTTAGGCA+TGG | + | chr8.3:16837751-16837770 | MS.gene033219:intron | 35.0% | |
| AGAAAGTTGTCTCTTACGAA+CGG | - | chr8.3:16838608-16838627 | None:intergenic | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | + | chr8.3:16838946-16838965 | MS.gene033219:CDS | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | - | chr8.3:16839393-16839412 | None:intergenic | 35.0% | |
| ATACTTTAGACTTCAGTGCA+TGG | + | chr8.3:16837251-16837270 | MS.gene033219:intron | 35.0% | |
| ATTGAACTAAGGTTGAACTG+CGG | + | chr8.3:16837455-16837474 | MS.gene033219:intron | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | + | chr8.3:16838072-16838091 | MS.gene033219:intron | 35.0% | |
| GAATAATAGCTCCTACTACA+TGG | + | chr8.3:16838811-16838830 | MS.gene033219:intron | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | - | chr8.3:16837864-16837883 | None:intergenic | 35.0% | |
| GCATAAGGAAAAGAGGATTA+AGG | - | chr8.3:16838683-16838702 | None:intergenic | 35.0% | |
| GCCAAAATAGTGGTTATAAG+TGG | - | chr8.3:16837854-16837873 | None:intergenic | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | + | chr8.3:16839091-16839110 | MS.gene033219:CDS | 35.0% | |
| GTAGAGAACAAGAAAATGCA+TGG | - | chr8.3:16837722-16837741 | None:intergenic | 35.0% | |
| GTTAAGCATTCTTTGCATGA+TGG | - | chr8.3:16837649-16837668 | None:intergenic | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | + | chr8.3:16838192-16838211 | MS.gene033219:intron | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | + | chr8.3:16836980-16836999 | MS.gene033219:CDS | 35.0% | |
| TTGTTGAAAACGACATCTAG+AGG | - | chr8.3:16837678-16837697 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | + | chr8.3:16838684-16838703 | MS.gene033219:intron | 35.0% |
| ! | ACTTTTGAATCTACTGTGTG+TGG | - | chr8.3:16838291-16838310 | None:intergenic | 35.0% |
| ! | CATGGTGATGTCTACAATAA+AGG | - | chr8.3:16840072-16840091 | None:intergenic | 35.0% |
| ! | CCCACTTATAACCACTATTT+TGG | + | chr8.3:16837850-16837869 | MS.gene033219:intron | 35.0% |
| ! | GACGGATTTGAACCATATAT+TGG | - | chr8.3:16839706-16839725 | None:intergenic | 35.0% |
| ! | TACGAATGTTATAGGAGTGT+CGG | - | chr8.3:16838128-16838147 | None:intergenic | 35.0% |
| ! | TCGACAAACTAACAGGTTTT+TGG | - | chr8.3:16837405-16837424 | None:intergenic | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | + | chr8.3:16838763-16838782 | MS.gene033219:CDS | 35.0% |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | + | chr8.3:16839962-16839981 | MS.gene033219:intron | 35.0% |
| ACAGGTCCAAGCATATAACA+AGG | + | chr8.3:16839051-16839070 | MS.gene033219:intron | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | + | chr8.3:16839872-16839891 | MS.gene033219:intron | 40.0% | |
| GCTCAGATCTTCAAACAGAA+GGG | + | chr8.3:16840091-16840110 | MS.gene033219:CDS | 40.0% | |
| GTTATATATGTGTCGGACAC+CGG | - | chr8.3:16838214-16838233 | None:intergenic | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | - | chr8.3:16839870-16839889 | None:intergenic | 40.0% | |
| TCAAATCCGTCTGAAAAGCA+CGG | + | chr8.3:16839715-16839734 | MS.gene033219:intron | 40.0% | |
| TCATGTGCCACATAGTTTGA+TGG | - | chr8.3:16840043-16840062 | None:intergenic | 40.0% | |
| TCTGTTTGAAGATCTGAGCA+TGG | - | chr8.3:16840090-16840109 | None:intergenic | 40.0% | |
| TGCTCAGATCTTCAAACAGA+AGG | + | chr8.3:16840090-16840109 | MS.gene033219:CDS | 40.0% | |
| TGGGAGTAACATTCACTCAT+GGG | - | chr8.3:16837834-16837853 | None:intergenic | 40.0% | |
| TGTTGATCAACGAAGGGTTA+TGG | + | chr8.3:16838328-16838347 | MS.gene033219:intron | 40.0% | |
| ! | ATCTAGAATTAGGTGTGTCG+CGG | + | chr8.3:16838099-16838118 | MS.gene033219:intron | 40.0% |
| ! | ATTTGTGTTGGTATGAGCTG+TGG | - | chr8.3:16839680-16839699 | None:intergenic | 40.0% |
| ! | CTTACCATAAGACTTGCTTC+AGG | + | chr8.3:16839990-16840009 | MS.gene033219:CDS | 40.0% |
| !! | CTTTAAGATGACTGGCAGTT+TGG | + | chr8.3:16838771-16838790 | MS.gene033219:CDS | 40.0% |
| GCACCAAGCATAAGGAAAAG+AGG | - | chr8.3:16838690-16838709 | None:intergenic | 45.0% | |
| GTGGGAGTAACATTCACTCA+TGG | - | chr8.3:16837835-16837854 | None:intergenic | 45.0% | |
| GTTGAACTGCGGTATGTAGT+TGG | + | chr8.3:16837466-16837485 | MS.gene033219:intron | 45.0% | |
| TCTCCGACTCATGATTCAAC+CGG | - | chr8.3:16837583-16837602 | None:intergenic | 45.0% | |
| TGACCGGTTGAATCATGAGT+CGG | + | chr8.3:16837577-16837596 | MS.gene033219:intron | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | - | chr8.3:16839997-16840016 | None:intergenic | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | + | chr8.3:16837044-16837063 | MS.gene033219:CDS | 45.0% | |
| ! | GCACGGACACATCTAGAATT+AGG | + | chr8.3:16838089-16838108 | MS.gene033219:intron | 45.0% |
| ! | TATTATCCGTGTTGGCGTGT+CGG | - | chr8.3:16839764-16839783 | None:intergenic | 45.0% |
| ACTCAGCTGCACCAAGCATA+AGG | - | chr8.3:16838698-16838717 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | + | chr8.3:16840001-16840020 | MS.gene033219:CDS | 50.0% | |
| ATTCGTGTCAGTGTCGTGTC+AGG | + | chr8.3:16838567-16838586 | MS.gene033219:intron | 50.0% | |
| CTTCAGATGCCACCATTGCA+AGG | + | chr8.3:16837043-16837062 | MS.gene033219:CDS | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | - | chr8.3:16839864-16839883 | None:intergenic | 50.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | - | chr8.3:16837034-16837053 | None:intergenic | 50.0% |
| CCTTGAGTGTGCCCTTGCAA+TGG | - | chr8.3:16837058-16837077 | None:intergenic | 55.0% | |
| CGGTGTCTATGTCGTGTGTC+CGG | - | chr8.3:16839744-16839763 | None:intergenic | 55.0% | |
| TAGACACCGACACGCCAACA+CGG | + | chr8.3:16839755-16839774 | MS.gene033219:intron | 55.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | - | chr8.3:16837055-16837074 | None:intergenic | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | + | chr8.3:16840004-16840023 | MS.gene033219:CDS | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | + | chr8.3:16837055-16837074 | MS.gene033219:CDS | 55.0% |
| ! | CGGTGTCCGTGCTTTTCAGA+CGG | - | chr8.3:16839724-16839743 | None:intergenic | 55.0% |
| ! | CGTCTGAAAAGCACGGACAC+CGG | + | chr8.3:16839722-16839741 | MS.gene033219:intron | 55.0% |
| ACAGCGACGTGTGTCCGACA+CGG | + | chr8.3:16839831-16839850 | MS.gene033219:intron | 60.0% | |
| GATTAGGCGTGTCCCCGTGT+CGG | - | chr8.3:16839848-16839867 | None:intergenic | 60.0% | |
| ACGGGGACACGCCTAATCCG+AGG | + | chr8.3:16839850-16839869 | MS.gene033219:intron | 65.0% | |
| AGCGACGTGTGTCCGACACG+GGG | + | chr8.3:16839833-16839852 | MS.gene033219:intron | 65.0% | |
| CAGCGACGTGTGTCCGACAC+GGG | + | chr8.3:16839832-16839851 | MS.gene033219:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16836939 | 16840150 | 16836939 | ID=MS.gene033219 |
| chr8.3 | mRNA | 16836939 | 16840150 | 16836939 | ID=MS.gene033219.t1;Parent=MS.gene033219 |
| chr8.3 | exon | 16836939 | 16837076 | 16836939 | ID=MS.gene033219.t1.exon1;Parent=MS.gene033219.t1 |
| chr8.3 | CDS | 16836939 | 16837076 | 16836939 | ID=cds.MS.gene033219.t1;Parent=MS.gene033219.t1 |
| chr8.3 | exon | 16838712 | 16838808 | 16838712 | ID=MS.gene033219.t1.exon2;Parent=MS.gene033219.t1 |
| chr8.3 | CDS | 16838712 | 16838808 | 16838712 | ID=cds.MS.gene033219.t1;Parent=MS.gene033219.t1 |
| chr8.3 | exon | 16838927 | 16838967 | 16838927 | ID=MS.gene033219.t1.exon3;Parent=MS.gene033219.t1 |
| chr8.3 | CDS | 16838927 | 16838967 | 16838927 | ID=cds.MS.gene033219.t1;Parent=MS.gene033219.t1 |
| chr8.3 | exon | 16839055 | 16839144 | 16839055 | ID=MS.gene033219.t1.exon4;Parent=MS.gene033219.t1 |
| chr8.3 | CDS | 16839055 | 16839144 | 16839055 | ID=cds.MS.gene033219.t1;Parent=MS.gene033219.t1 |
| chr8.3 | exon | 16839971 | 16840150 | 16839971 | ID=MS.gene033219.t1.exon5;Parent=MS.gene033219.t1 |
| chr8.3 | CDS | 16839971 | 16840150 | 16839971 | ID=cds.MS.gene033219.t1;Parent=MS.gene033219.t1 |
| Gene Sequence |
| Protein sequence |
