AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03322

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03322.t1 MTR_6g035315 95.550 427 19 0 25 451 22 448 0.0 744
MS.gene03322.t1 MTR_1g098920 71.329 429 110 6 24 445 23 445 0.0 590
MS.gene03322.t1 MTR_2g098080 42.169 415 208 6 37 444 22 411 2.16e-91 284
MS.gene03322.t1 MTR_7g103390 50.000 244 101 6 11 248 1 229 3.22e-66 219
MS.gene03322.t1 MTR_1g061640 62.420 157 56 3 93 248 95 249 5.27e-58 199
MS.gene03322.t1 MTR_1g061640 44.156 77 36 1 371 440 406 482 7.38e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03322.t1 AT1G21200 61.488 457 148 10 1 446 1 440 1.80e-177 504
MS.gene03322.t1 AT1G21200 61.488 457 148 10 1 446 1 440 1.80e-177 504
MS.gene03322.t1 AT1G76870 52.740 438 143 15 17 447 3 383 8.53e-127 373
MS.gene03322.t1 AT1G76870 52.740 438 143 15 17 447 3 383 8.53e-127 373
MS.gene03322.t1 AT1G76870 52.740 438 143 15 17 447 3 383 8.53e-127 373
MS.gene03322.t1 AT3G10040 44.622 251 109 8 21 252 7 246 4.78e-46 165

Find 111 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCAGTGTTGCAGAAAA+AGG 0.201562 6.2:-31069918 MS.gene03322:CDS
CATGAAGATGCTACTACTTT+TGG 0.214221 6.2:-31069383 MS.gene03322:CDS
AGAAGGAAGTAGAGGGAAAA+AGG 0.214962 6.2:-31070056 MS.gene03322:CDS
AATGCAATCTATTACAATTA+TGG 0.268261 6.2:+31069639 None:intergenic
AATTCAACGATCTTAATAAA+AGG 0.306147 6.2:-31069823 MS.gene03322:CDS
ATAACGGCGGTGTCTTATAT+TGG 0.308369 6.2:-31069983 MS.gene03322:CDS
TATCATGATCATCTCTATTT+CGG 0.312915 6.2:+31069573 None:intergenic
GGTGATAGTCGTAGAATCTT+TGG 0.314129 6.2:-31069449 MS.gene03322:CDS
ATCTTAATAAAAGGTATAAA+AGG 0.318059 6.2:-31069814 MS.gene03322:CDS
TGGGAATTCTTTAAATTGTC+AGG 0.360558 6.2:-31069363 MS.gene03322:CDS
GTGATAGTCGTAGAATCTTT+GGG 0.367392 6.2:-31069448 MS.gene03322:CDS
TGACGAGGATGATCATGATA+TGG 0.392416 6.2:-31069516 MS.gene03322:CDS
CAAAAGTAGTAGCATCTTCA+TGG 0.393797 6.2:+31069384 None:intergenic
CTGTCAAGTTGTTGAAAATC+CGG 0.402795 6.2:-31069762 MS.gene03322:CDS
CGGCGGCACCAGCTTTAACT+AGG 0.419109 6.2:-31069042 None:intergenic
GTCGATGAACGAGTTTAGTC+AGG 0.421399 6.2:-31070146 MS.gene03322:CDS
TTCAACGTCCCTATTGTAAG+AGG 0.429215 6.2:+31070187 None:intergenic
TAAGTGGAAATCTATATCTA+AGG 0.434785 6.2:-31069894 MS.gene03322:CDS
CAAGGTGATGGTGGTGGTGG+TGG 0.436461 6.2:-31070343 MS.gene03322:CDS
GAAATCTATATCTAAGGTTA+TGG 0.439671 6.2:-31069888 MS.gene03322:CDS
TGTAAGGACCGTTGCAATGC+AGG 0.440711 6.2:+31069605 None:intergenic
AGATGGAAATCAAGCTTTAC+CGG 0.441260 6.2:-31069297 MS.gene03322:CDS
GTTCAAGGTGATGGTGGTGG+TGG 0.446247 6.2:-31070346 MS.gene03322:CDS
ATTTCGGAGAGCTATTTGTA+AGG 0.472772 6.2:+31069589 None:intergenic
GTGCTTTCTTCGATTAATGA+AGG 0.476946 6.2:-31070214 MS.gene03322:CDS
TAGTAGCATCTTCATGGCCT+TGG 0.479201 6.2:+31069390 None:intergenic
GGTAAAGCTTGATTTCCATC+TGG 0.481200 6.2:+31069299 None:intergenic
AACTCATCCGTGTCAAGGGC+CGG 0.484357 6.2:-31070239 MS.gene03322:CDS
ACAGATTCAGATTGAGATGA+TGG 0.485981 6.2:-31069201 MS.gene03322:CDS
TGTTGAAAATCCGGCTTTGT+TGG 0.486943 6.2:-31069753 MS.gene03322:CDS
TCTCAAGGAGGTATAGTTCA+AGG 0.489422 6.2:-31070361 MS.gene03322:CDS
GGGAGTTCTGAAGGTGGTAG+TGG 0.493151 6.2:-31069953 MS.gene03322:CDS
CGCCGTGGCAGCGTGTGAAG+TGG 0.498443 6.2:-31070030 MS.gene03322:CDS
AAGCTTGATTTCCATCTGGT+TGG 0.498671 6.2:+31069303 None:intergenic
CAGCTTGGTTACAGAAGCAA+TGG 0.506444 6.2:-31069262 MS.gene03322:CDS
AAAAGGCTTAACGATATGCT+TGG 0.506945 6.2:-31069797 MS.gene03322:CDS
CGATGAACTCGCATCGATCC+CGG 0.508975 6.2:+31070298 None:intergenic
GTGTCTTATATTGGCGAGGA+CGG 0.520156 6.2:-31069974 MS.gene03322:CDS
CTGAAGGTGGTAGTGGTGGA+AGG 0.527560 6.2:-31069946 MS.gene03322:CDS
CTCGTCATGATCATCATGAT+AGG 0.537593 6.2:+31069532 None:intergenic
TCGATTACATCCAACAAAGC+CGG 0.539815 6.2:+31069743 None:intergenic
GAGGAAGATGAGCCGGAGGA+AGG 0.539815 6.2:-31070097 MS.gene03322:CDS
AGCTTGGTTACAGAAGCAAT+GGG 0.542768 6.2:-31069261 MS.gene03322:CDS
GAGCCGGAGGAAGGTGGTGA+TGG 0.542968 6.2:-31070088 MS.gene03322:CDS
GGCTTAACGATATGCTTGGA+AGG 0.546544 6.2:-31069793 MS.gene03322:CDS
CATAAAAGTTCATATCCTCA+TGG 0.548000 6.2:-31069335 MS.gene03322:CDS
ATATCTTAACGAGAAAGAAA+AGG 0.550124 6.2:-31069720 MS.gene03322:CDS
GAACTGAAGCGAAAGGAGAT+CGG 0.553087 6.2:-31069062 MS.gene03322:CDS
CATCAAACTCATCCGTGTCA+AGG 0.557158 6.2:-31070244 MS.gene03322:CDS
TGTCTTATATTGGCGAGGAC+GGG 0.557593 6.2:-31069973 MS.gene03322:CDS
GGGGAGTGAGGAAGATGAGC+CGG 0.557735 6.2:-31070104 MS.gene03322:CDS
CGGAAAACATGAAAGCAGCT+TGG 0.558783 6.2:-31069277 MS.gene03322:CDS
ATCAAACTCATCCGTGTCAA+GGG 0.560403 6.2:-31070243 MS.gene03322:CDS
GACACGGATGAGTTTGATGT+TGG 0.561258 6.2:+31070248 None:intergenic
GGCGAGGACGGGAGTTCTGA+AGG 0.563055 6.2:-31069962 MS.gene03322:CDS
ATAGTTCAAGGTGATGGTGG+TGG 0.564193 6.2:-31070349 MS.gene03322:CDS
AGAGTTGGAGAAGTTCAAGC+TGG 0.565535 6.2:-31069126 MS.gene03322:CDS
TGATGTTGGTTCATCGTATG+CGG 0.567222 6.2:+31070262 None:intergenic
GGATGATCATGATATGGAAA+CGG 0.567609 6.2:-31069510 MS.gene03322:CDS
GGACAGACGGTCCAACCAGA+TGG 0.572770 6.2:-31069314 MS.gene03322:CDS
TCTAAGGTTATGGCTGAAAG+AGG 0.573389 6.2:-31069878 MS.gene03322:CDS
CGCACGATCCTGCATTGCAA+CGG 0.573999 6.2:-31069613 MS.gene03322:CDS
GCTTGAACTTCTCCAACTCT+CGG 0.574294 6.2:+31069129 None:intergenic
GGTATAGTTCAAGGTGATGG+TGG 0.576507 6.2:-31070352 MS.gene03322:CDS
AGCACCGCCGGCCCTTGACA+CGG 0.577678 6.2:+31070232 None:intergenic
GCTTAACGATATGCTTGGAA+GGG 0.580590 6.2:-31069792 MS.gene03322:CDS
GGAGGTATAGTTCAAGGTGA+TGG 0.582990 6.2:-31070355 MS.gene03322:CDS
TGCTTTAGAACTGAAGCGAA+AGG 0.583633 6.2:-31069069 MS.gene03322:CDS
AAACAAACACTCGGGGAGTG+AGG 0.585505 6.2:-31070116 MS.gene03322:CDS
TTAGCAAACCTAGTTAAAGC+TGG 0.588173 6.2:+31069034 None:intergenic
TGACCATCACCACCTTCCTC+CGG 0.589498 6.2:+31070085 None:intergenic
GTCCACTTCACACGCTGCCA+CGG 0.590221 6.2:+31070028 None:intergenic
CGTTGCAATGCAGGATCGTG+CGG 0.590521 6.2:+31069614 None:intergenic
GGAGATAGAAACAAACACTC+GGG 0.601048 6.2:-31070124 MS.gene03322:CDS
CTTAACGATATGCTTGGAAG+GGG 0.602105 6.2:-31069791 MS.gene03322:CDS
GAGTGAGGAAGATGAGCCGG+AGG 0.604600 6.2:-31070101 MS.gene03322:CDS
CATCATCAAGAAGGAAGTAG+AGG 0.606503 6.2:-31070064 MS.gene03322:CDS
AGTTCTGAAGGTGGTAGTGG+TGG 0.609983 6.2:-31069950 MS.gene03322:CDS
TTCATATCCTCATGGACAGA+CGG 0.612854 6.2:-31069327 MS.gene03322:CDS
TCGATGCGAGTTCATCGTCA+AGG 0.616549 6.2:-31070292 MS.gene03322:CDS
AATTTATCCTCACATTGCTG+AGG 0.616974 6.2:+31069842 None:intergenic
GAAGATGAGCCGGAGGAAGG+TGG 0.617091 6.2:-31070094 MS.gene03322:CDS
GGTGATGGTCATCATCAAGA+AGG 0.617927 6.2:-31070073 MS.gene03322:CDS
TGTGAAGTGGACTGATAAGA+TGG 0.627029 6.2:-31070017 MS.gene03322:CDS
ATGATAACGATGATGTGAGA+AGG 0.627318 6.2:-31069556 MS.gene03322:CDS
ATCATCAAGAAGGAAGTAGA+GGG 0.627850 6.2:-31070063 MS.gene03322:CDS
TGATAGTCGTAGAATCTTTG+GGG 0.630547 6.2:-31069447 MS.gene03322:CDS
GGGAGATAGAAACAAACACT+CGG 0.632973 6.2:-31070125 MS.gene03322:CDS
CGATGCGAGTTCATCGTCAA+GGG 0.633456 6.2:-31070291 MS.gene03322:CDS
GAAGACAACTATGCTTCCCA+TGG 0.637080 6.2:-31069470 MS.gene03322:CDS
TTAATCGAAGAAAGCACCGC+CGG 0.638253 6.2:+31070220 None:intergenic
ATGGAAGGGAATTTGTCTCA+AGG 0.640788 6.2:-31070376 MS.gene03322:CDS
TGTTGTTGAGAAGAAATGGA+AGG 0.642321 6.2:-31070391 None:intergenic
GTTGTTGAGAAGAAATGGAA+GGG 0.643736 6.2:-31070390 None:intergenic
GCAATGGGTTGAATCTCGCT+CGG 0.646017 6.2:-31069246 MS.gene03322:CDS
TCGATGAACGAGTTTAGTCA+GGG 0.648981 6.2:-31070145 MS.gene03322:CDS
TCATCCGTGTCAAGGGCCGG+CGG 0.649182 6.2:-31070236 MS.gene03322:CDS
GATTCTACGACTATCACCAT+GGG 0.654743 6.2:+31069454 None:intergenic
GGCGGTGTCTTATATTGGCG+AGG 0.657443 6.2:-31069978 MS.gene03322:CDS
CTATCATGATGATCATGACG+AGG 0.661777 6.2:-31069531 MS.gene03322:CDS
GGTTGGACCGTCTGTCCATG+AGG 0.661820 6.2:+31069320 None:intergenic
GATAGTCGTAGAATCTTTGG+GGG 0.665641 6.2:-31069446 MS.gene03322:CDS
AGATTCTACGACTATCACCA+TGG 0.671683 6.2:+31069453 None:intergenic
AAAAGACTAAGACAAGGCCA+AGG 0.689910 6.2:-31069407 MS.gene03322:CDS
CTGAAGCGAAAGGAGATCGG+CGG 0.699525 6.2:-31069059 MS.gene03322:CDS
TGTTTCGCCTCAGCAATGTG+AGG 0.699798 6.2:-31069849 MS.gene03322:CDS
GAAGGGAATTTGTCTCAAGG+AGG 0.706788 6.2:-31070373 MS.gene03322:CDS
GAGATAGAAACAAACACTCG+GGG 0.708162 6.2:-31070123 MS.gene03322:CDS
GAGGACGGGAGTTCTGAAGG+TGG 0.721621 6.2:-31069959 MS.gene03322:CDS
AGTGGACTGATAAGATGGTG+AGG 0.726752 6.2:-31070012 MS.gene03322:CDS
ACTACGAAAAGACTAAGACA+AGG 0.735602 6.2:-31069413 MS.gene03322:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTAATAAAAGGTATAAA+AGG - chr6.2:31069605-31069624 MS.gene03322:CDS 15.0%
!! AATGCAATCTATTACAATTA+TGG + chr6.2:31069783-31069802 None:intergenic 20.0%
!! AATTCAACGATCTTAATAAA+AGG - chr6.2:31069596-31069615 MS.gene03322:CDS 20.0%
!! AGAGAAACAAAAATTCAAAT+GGG - chr6.2:31070245-31070264 MS.gene03322:CDS 20.0%
!! TAGAGAAACAAAAATTCAAA+TGG - chr6.2:31070244-31070263 MS.gene03322:CDS 20.0%
! ATATCTTAACGAGAAAGAAA+AGG - chr6.2:31069699-31069718 MS.gene03322:CDS 25.0%
! TAAGTGGAAATCTATATCTA+AGG - chr6.2:31069525-31069544 MS.gene03322:CDS 25.0%
! TATCATGATCATCTCTATTT+CGG + chr6.2:31069849-31069868 None:intergenic 25.0%
!! GAAATCTATATCTAAGGTTA+TGG - chr6.2:31069531-31069550 MS.gene03322:CDS 25.0%
AACAAAAATTCAAATGGGAG+AGG - chr6.2:31070250-31070269 MS.gene03322:CDS 30.0%
CATAAAAGTTCATATCCTCA+TGG - chr6.2:31070084-31070103 MS.gene03322:CDS 30.0%
TGGGAATTCTTTAAATTGTC+AGG - chr6.2:31070056-31070075 MS.gene03322:CDS 30.0%
! AAGGTTTTCCTCTTACAATA+GGG - chr6.2:31069224-31069243 MS.gene03322:CDS 30.0%
! CATGAGGATATGAACTTTTA+TGG + chr6.2:31070086-31070105 None:intergenic 30.0%
!! ATGAAGATGCTACTACTTTT+GGG - chr6.2:31070037-31070056 MS.gene03322:CDS 30.0%
AAAAGGCTTAACGATATGCT+TGG - chr6.2:31069622-31069641 MS.gene03322:CDS 35.0%
AATTTATCCTCACATTGCTG+AGG + chr6.2:31069580-31069599 None:intergenic 35.0%
ACAGATTCAGATTGAGATGA+TGG - chr6.2:31070218-31070237 MS.gene03322:CDS 35.0%
ACTACGAAAAGACTAAGACA+AGG - chr6.2:31070006-31070025 MS.gene03322:CDS 35.0%
AGATGGAAATCAAGCTTTAC+CGG - chr6.2:31070122-31070141 MS.gene03322:CDS 35.0%
ATCATCAAGAAGGAAGTAGA+GGG - chr6.2:31069356-31069375 MS.gene03322:CDS 35.0%
ATTTCGGAGAGCTATTTGTA+AGG + chr6.2:31069833-31069852 None:intergenic 35.0%
ATTTGCAGTGTTGCAGAAAA+AGG - chr6.2:31069501-31069520 MS.gene03322:CDS 35.0%
CAAAAGTAGTAGCATCTTCA+TGG + chr6.2:31070038-31070057 None:intergenic 35.0%
GGATGATCATGATATGGAAA+CGG - chr6.2:31069909-31069928 MS.gene03322:CDS 35.0%
GTGATAGTCGTAGAATCTTT+GGG - chr6.2:31069971-31069990 MS.gene03322:CDS 35.0%
GTGCTTTCTTCGATTAATGA+AGG - chr6.2:31069205-31069224 MS.gene03322:CDS 35.0%
TGATAGTCGTAGAATCTTTG+GGG - chr6.2:31069972-31069991 MS.gene03322:CDS 35.0%
TTTGCAGTGTTGCAGAAAAA+GGG - chr6.2:31069502-31069521 MS.gene03322:CDS 35.0%
! ATGATAACGATGATGTGAGA+AGG - chr6.2:31069863-31069882 MS.gene03322:CDS 35.0%
! ATTTTCAACAACTTGACAGG+AGG + chr6.2:31069656-31069675 None:intergenic 35.0%
! CATGAAGATGCTACTACTTT+TGG - chr6.2:31070036-31070055 MS.gene03322:CDS 35.0%
! CTGTCAAGTTGTTGAAAATC+CGG - chr6.2:31069657-31069676 MS.gene03322:CDS 35.0%
! GAAGGTTTTCCTCTTACAAT+AGG - chr6.2:31069223-31069242 MS.gene03322:CDS 35.0%
!!! TTTTGGTGGTTTTGATTTGC+CGG - chr6.2:31069102-31069121 MS.gene03322:CDS 35.0%
AAAAGACTAAGACAAGGCCA+AGG - chr6.2:31070012-31070031 MS.gene03322:CDS 40.0%
AAGCTTGATTTCCATCTGGT+TGG + chr6.2:31070119-31070138 None:intergenic 40.0%
AAGGAAGTAGAGGGAAAAAG+GGG - chr6.2:31069365-31069384 MS.gene03322:CDS 40.0%
AGAAGGAAGTAGAGGGAAAA+AGG - chr6.2:31069363-31069382 MS.gene03322:CDS 40.0%
AGATTCTACGACTATCACCA+TGG + chr6.2:31069969-31069988 None:intergenic 40.0%
AGCTTGGTTACAGAAGCAAT+GGG - chr6.2:31070158-31070177 MS.gene03322:CDS 40.0%
ATAACGGCGGTGTCTTATAT+TGG - chr6.2:31069436-31069455 MS.gene03322:CDS 40.0%
ATCAAACTCATCCGTGTCAA+GGG - chr6.2:31069176-31069195 MS.gene03322:CDS 40.0%
ATGGAAGGGAATTTGTCTCA+AGG - chr6.2:31069043-31069062 MS.gene03322:CDS 40.0%
CAAGAAAAAAGACCGAGAGT+TGG - chr6.2:31070278-31070297 MS.gene03322:CDS 40.0%
CATCATCAAGAAGGAAGTAG+AGG - chr6.2:31069355-31069374 MS.gene03322:CDS 40.0%
CTATCATGATGATCATGACG+AGG - chr6.2:31069888-31069907 MS.gene03322:CDS 40.0%
CTCGTCATGATCATCATGAT+AGG + chr6.2:31069890-31069909 None:intergenic 40.0%
CTTAACGATATGCTTGGAAG+GGG - chr6.2:31069628-31069647 MS.gene03322:CDS 40.0%
GAAGGAAGTAGAGGGAAAAA+GGG - chr6.2:31069364-31069383 MS.gene03322:CDS 40.0%
GAGATAGAAACAAACACTCG+GGG - chr6.2:31069296-31069315 MS.gene03322:CDS 40.0%
GATAGTCGTAGAATCTTTGG+GGG - chr6.2:31069973-31069992 MS.gene03322:CDS 40.0%
GATTCTACGACTATCACCAT+GGG + chr6.2:31069968-31069987 None:intergenic 40.0%
GCTTAACGATATGCTTGGAA+GGG - chr6.2:31069627-31069646 MS.gene03322:CDS 40.0%
GGAGATAGAAACAAACACTC+GGG - chr6.2:31069295-31069314 MS.gene03322:CDS 40.0%
GGGAGATAGAAACAAACACT+CGG - chr6.2:31069294-31069313 MS.gene03322:CDS 40.0%
GGTAAAGCTTGATTTCCATC+TGG + chr6.2:31070123-31070142 None:intergenic 40.0%
GGTGATAGTCGTAGAATCTT+TGG - chr6.2:31069970-31069989 MS.gene03322:CDS 40.0%
TCGATGAACGAGTTTAGTCA+GGG - chr6.2:31069274-31069293 MS.gene03322:CDS 40.0%
TCGATTACATCCAACAAAGC+CGG + chr6.2:31069679-31069698 None:intergenic 40.0%
TGACGAGGATGATCATGATA+TGG - chr6.2:31069903-31069922 MS.gene03322:CDS 40.0%
TGTTGCAGAAAAAGGGTAAG+TGG - chr6.2:31069509-31069528 MS.gene03322:CDS 40.0%
TTCAACGTCCCTATTGTAAG+AGG + chr6.2:31069235-31069254 None:intergenic 40.0%
TTCATATCCTCATGGACAGA+CGG - chr6.2:31070092-31070111 MS.gene03322:CDS 40.0%
! CGGATTTTCAACAACTTGAC+AGG + chr6.2:31069659-31069678 None:intergenic 40.0%
! GATGGTGAGGCTTTTGATAA+CGG - chr6.2:31069420-31069439 MS.gene03322:CDS 40.0%
! TCTAAGGTTATGGCTGAAAG+AGG - chr6.2:31069541-31069560 MS.gene03322:CDS 40.0%
! TCTCAAGGAGGTATAGTTCA+AGG - chr6.2:31069058-31069077 MS.gene03322:CDS 40.0%
! TGTTGAAAATCCGGCTTTGT+TGG - chr6.2:31069666-31069685 MS.gene03322:CDS 40.0%
!! CAAGCTGCTTTCATGTTTTC+CGG + chr6.2:31070144-31070163 None:intergenic 40.0%
!! TGATGTTGGTTCATCGTATG+CGG + chr6.2:31069160-31069179 None:intergenic 40.0%
!! TGCTTTAGAACTGAAGCGAA+AGG - chr6.2:31070350-31070369 MS.gene03322:CDS 40.0%
!! TGTGAAGTGGACTGATAAGA+TGG - chr6.2:31069402-31069421 MS.gene03322:CDS 40.0%
!!! TTTGGTGGTTTTGATTTGCC+GGG - chr6.2:31069103-31069122 MS.gene03322:CDS 40.0%
AGAGTTGGAGAAGTTCAAGC+TGG - chr6.2:31070293-31070312 MS.gene03322:CDS 45.0%
CAGCTTGGTTACAGAAGCAA+TGG - chr6.2:31070157-31070176 MS.gene03322:CDS 45.0%
CATCAAACTCATCCGTGTCA+AGG - chr6.2:31069175-31069194 MS.gene03322:CDS 45.0%
CGGAAAACATGAAAGCAGCT+TGG - chr6.2:31070142-31070161 MS.gene03322:CDS 45.0%
GAACTGAAGCGAAAGGAGAT+CGG - chr6.2:31070357-31070376 MS.gene03322:CDS 45.0%
GAAGACAACTATGCTTCCCA+TGG - chr6.2:31069949-31069968 MS.gene03322:CDS 45.0%
GAAGGGAATTTGTCTCAAGG+AGG - chr6.2:31069046-31069065 MS.gene03322:CDS 45.0%
GACACGGATGAGTTTGATGT+TGG + chr6.2:31069174-31069193 None:intergenic 45.0%
GCTTGAACTTCTCCAACTCT+CGG + chr6.2:31070293-31070312 None:intergenic 45.0%
GGCTTAACGATATGCTTGGA+AGG - chr6.2:31069626-31069645 MS.gene03322:CDS 45.0%
GTCGATGAACGAGTTTAGTC+AGG - chr6.2:31069273-31069292 MS.gene03322:CDS 45.0%
GTGTCTTATATTGGCGAGGA+CGG - chr6.2:31069445-31069464 MS.gene03322:CDS 45.0%
TAGTAGCATCTTCATGGCCT+TGG + chr6.2:31070032-31070051 None:intergenic 45.0%
TGTCTTATATTGGCGAGGAC+GGG - chr6.2:31069446-31069465 MS.gene03322:CDS 45.0%
! GGAGGTATAGTTCAAGGTGA+TGG - chr6.2:31069064-31069083 MS.gene03322:CDS 45.0%
! GGTATAGTTCAAGGTGATGG+TGG - chr6.2:31069067-31069086 MS.gene03322:CDS 45.0%
! GGTGATGGTCATCATCAAGA+AGG - chr6.2:31069346-31069365 MS.gene03322:CDS 45.0%
! TAGAATCTTTGGGGGATTGG+CGG - chr6.2:31069981-31070000 MS.gene03322:CDS 45.0%
! TCGTAGAATCTTTGGGGGAT+TGG - chr6.2:31069978-31069997 MS.gene03322:CDS 45.0%
!! AGTGGACTGATAAGATGGTG+AGG - chr6.2:31069407-31069426 MS.gene03322:CDS 45.0%
!! ATAGTTCAAGGTGATGGTGG+TGG - chr6.2:31069070-31069089 MS.gene03322:CDS 45.0%
!! TTAATCGAAGAAAGCACCGC+CGG + chr6.2:31069202-31069221 None:intergenic 45.0%
AAACAAACACTCGGGGAGTG+AGG - chr6.2:31069303-31069322 MS.gene03322:CDS 50.0%
CGATGCGAGTTCATCGTCAA+GGG - chr6.2:31069128-31069147 MS.gene03322:CDS 50.0%
TCGATGCGAGTTCATCGTCA+AGG - chr6.2:31069127-31069146 MS.gene03322:CDS 50.0%
TGTAAGGACCGTTGCAATGC+AGG + chr6.2:31069817-31069836 None:intergenic 50.0%
TGTTTCGCCTCAGCAATGTG+AGG - chr6.2:31069570-31069589 MS.gene03322:CDS 50.0%
! AGAATCTTTGGGGGATTGGC+GGG - chr6.2:31069982-31070001 MS.gene03322:CDS 50.0%
!! AGTTCTGAAGGTGGTAGTGG+TGG - chr6.2:31069469-31069488 MS.gene03322:CDS 50.0%
!! GCAATGGGTTGAATCTCGCT+CGG - chr6.2:31070173-31070192 MS.gene03322:CDS 50.0%
!!! GGTGAGGCTTTTGATAACGG+CGG - chr6.2:31069423-31069442 MS.gene03322:CDS 50.0%
AACTCATCCGTGTCAAGGGC+CGG - chr6.2:31069180-31069199 MS.gene03322:CDS 55.0%
CGCACGATCCTGCATTGCAA+CGG - chr6.2:31069806-31069825 MS.gene03322:CDS 55.0%
CGTTGCAATGCAGGATCGTG+CGG + chr6.2:31069808-31069827 None:intergenic 55.0%
CTGAAGCGAAAGGAGATCGG+CGG - chr6.2:31070360-31070379 MS.gene03322:CDS 55.0%
GGCGGTGTCTTATATTGGCG+AGG - chr6.2:31069441-31069460 MS.gene03322:CDS 55.0%
TGACCATCACCACCTTCCTC+CGG + chr6.2:31069337-31069356 None:intergenic 55.0%
! CGATGAACTCGCATCGATCC+CGG + chr6.2:31069124-31069143 None:intergenic 55.0%
!! CTGAAGGTGGTAGTGGTGGA+AGG - chr6.2:31069473-31069492 MS.gene03322:CDS 55.0%
!! GGGAGTTCTGAAGGTGGTAG+TGG - chr6.2:31069466-31069485 MS.gene03322:CDS 55.0%
!! GTTCAAGGTGATGGTGGTGG+TGG - chr6.2:31069073-31069092 MS.gene03322:CDS 55.0%
!!! GGTGGTGGTGGTGGTTCTTT+TGG - chr6.2:31069085-31069104 MS.gene03322:CDS 55.0%
!!! GGTGGTGGTGGTTCTTTTGG+TGG - chr6.2:31069088-31069107 MS.gene03322:CDS 55.0%
GAAGATGAGCCGGAGGAAGG+TGG - chr6.2:31069325-31069344 MS.gene03322:CDS 60.0%
GAGGAAGATGAGCCGGAGGA+AGG - chr6.2:31069322-31069341 MS.gene03322:CDS 60.0%
GAGTGAGGAAGATGAGCCGG+AGG - chr6.2:31069318-31069337 MS.gene03322:CDS 60.0%
GGACAGACGGTCCAACCAGA+TGG - chr6.2:31070105-31070124 MS.gene03322:CDS 60.0%
GGGGAGTGAGGAAGATGAGC+CGG - chr6.2:31069315-31069334 MS.gene03322:CDS 60.0%
GGTTGGACCGTCTGTCCATG+AGG + chr6.2:31070102-31070121 None:intergenic 60.0%
GTCCACTTCACACGCTGCCA+CGG + chr6.2:31069394-31069413 None:intergenic 60.0%
!! CAAGGTGATGGTGGTGGTGG+TGG - chr6.2:31069076-31069095 MS.gene03322:CDS 60.0%
!! GAGGACGGGAGTTCTGAAGG+TGG - chr6.2:31069460-31069479 MS.gene03322:CDS 60.0%
GAGCCGGAGGAAGGTGGTGA+TGG - chr6.2:31069331-31069350 MS.gene03322:CDS 65.0%
GAGGGAAAAAGGGGTCGCCG+TGG - chr6.2:31069374-31069393 MS.gene03322:CDS 65.0%
TCATCCGTGTCAAGGGCCGG+CGG - chr6.2:31069183-31069202 MS.gene03322:CDS 65.0%
! GGCGAGGACGGGAGTTCTGA+AGG - chr6.2:31069457-31069476 MS.gene03322:CDS 65.0%
AGCACCGCCGGCCCTTGACA+CGG + chr6.2:31069190-31069209 None:intergenic 70.0%
CGCCGTGGCAGCGTGTGAAG+TGG - chr6.2:31069389-31069408 MS.gene03322:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 31069043 31070398 31069043 ID=MS.gene03322
chr6.2 mRNA 31069043 31070398 31069043 ID=MS.gene03322.t1;Parent=MS.gene03322
chr6.2 exon 31069043 31070398 31069043 ID=MS.gene03322.t1.exon1;Parent=MS.gene03322.t1
chr6.2 CDS 31069043 31070398 31069043 ID=cds.MS.gene03322.t1;Parent=MS.gene03322.t1
Gene Sequence

>MS.gene03322

ATGGAAGGGAATTTGTCTCAAGGAGGTATAGTTCAAGGTGATGGTGGTGGTGGTGGTTCTTTTGGTGGTTTTGATTTGCCGGGATCGATGCGAGTTCATCGTCAAGGGCAGAATCCGCATACGATGAACCAACATCAAACTCATCCGTGTCAAGGGCCGGCGGTGCTTTCTTCGATTAATGAAGGTTTTCCTCTTACAATAGGGACGTTGAAGAACTGTGATCAGACGATGTCGATGAACGAGTTTAGTCAGGGAGATAGAAACAAACACTCGGGGAGTGAGGAAGATGAGCCGGAGGAAGGTGGTGATGGTCATCATCAAGAAGGAAGTAGAGGGAAAAAGGGGTCGCCGTGGCAGCGTGTGAAGTGGACTGATAAGATGGTGAGGCTTTTGATAACGGCGGTGTCTTATATTGGCGAGGACGGGAGTTCTGAAGGTGGTAGTGGTGGAAGGAAAAAATTTGCAGTGTTGCAGAAAAAGGGTAAGTGGAAATCTATATCTAAGGTTATGGCTGAAAGAGGTTATCGTGTTTCGCCTCAGCAATGTGAGGATAAATTCAACGATCTTAATAAAAGGTATAAAAGGCTTAACGATATGCTTGGAAGGGGAACCTCCTGTCAAGTTGTTGAAAATCCGGCTTTGTTGGATGTAATCGAATATCTTAACGAGAAAGAAAAGGATGATGTTAGAAAAATATTGAACTCGAAACATCTCTTCTATGAAGAGATGTGTTCTTACCATAATTGTAATAGATTGCATTTGCCGCACGATCCTGCATTGCAACGGTCCTTACAAATAGCTCTCCGAAATAGAGATGATCATGATAACGATGATGTGAGAAGGTCCTATCATGATGATCATGACGAGGATGATCATGATATGGAAACGGACGATCATGATGAGTTCGAAGACAACTATGCTTCCCATGGTGATAGTCGTAGAATCTTTGGGGGATTGGCGGGAACTACGAAAAGACTAAGACAAGGCCAAGGCCATGAAGATGCTACTACTTTTGGGAATTCTTTAAATTGTCAGGAGTACCATAAAAGTTCATATCCTCATGGACAGACGGTCCAACCAGATGGAAATCAAGCTTTACCGGAAAACATGAAAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTCGGTTCAGTTAGAAGAACAGAAGCTACAGATTCAGATTGAGATGATGGAACTAGAGAAACAAAAATTCAAATGGGAGAGGTTTAGCAAGAAAAAAGACCGAGAGTTGGAGAAGTTCAAGCTGGAGAATGACAGAATGAAGATTGAGAATGAACGTATTGCTTTAGAACTGAAGCGAAAGGAGATCGGCGGCACCAGCTTTAACTAG
Protein sequence

>MS.gene03322.t1

MEGNLSQGGIVQGDGGGGGSFGGFDLPGSMRVHRQGQNPHTMNQHQTHPCQGPAVLSSINEGFPLTIGTLKNCDQTMSMNEFSQGDRNKHSGSEEDEPEEGGDGHHQEGSRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDGSSEGGSGGRKKFAVLQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCQVVENPALLDVIEYLNEKEKDDVRKILNSKHLFYEEMCSYHNCNRLHLPHDPALQRSLQIALRNRDDHDNDDVRRSYHDDHDEDDHDMETDDHDEFEDNYASHGDSRRIFGGLAGTTKRLRQGQGHEDATTFGNSLNCQEYHKSSYPHGQTVQPDGNQALPENMKAAWLQKQWVESRSVQLEEQKLQIQIEMMELEKQKFKWERFSKKKDRELEKFKLENDRMKIENERIALELKRKEIGGTSFN