Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033337.t1 | RHN72439.1 | 74.1 | 873 | 90 | 2 | 1 | 737 | 1 | 873 | 0.00E+00 | 1193.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033337.t1 | Q9SZL8 | 24.0 | 601 | 312 | 7 | 79 | 537 | 77 | 674 | 1.3e-44 | 183.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033337.t1 | A0A396J342 | 74.1 | 873 | 90 | 2 | 1 | 737 | 1 | 873 | 0.0e+00 | 1193.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene033337.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033337.t1 | MTR_1g050570 | 87.791 | 172 | 18 | 1 | 546 | 714 | 1 | 172 | 1.51e-87 | 273 |
MS.gene033337.t1 | MTR_7g446520 | 57.895 | 228 | 74 | 2 | 58 | 281 | 71 | 280 | 1.11e-83 | 269 |
MS.gene033337.t1 | MTR_7g028855 | 52.995 | 217 | 87 | 3 | 4 | 218 | 60 | 263 | 1.10e-67 | 231 |
MS.gene033337.t1 | MTR_7g446480 | 75.410 | 122 | 30 | 0 | 152 | 273 | 140 | 261 | 1.29e-57 | 199 |
MS.gene033337.t1 | MTR_7g446510 | 74.590 | 122 | 31 | 0 | 152 | 273 | 155 | 276 | 1.46e-55 | 194 |
MS.gene033337.t1 | MTR_7g446510 | 69.231 | 52 | 16 | 0 | 280 | 331 | 1 | 52 | 7.65e-17 | 82.8 |
MS.gene033337.t1 | MTR_7g446510 | 36.885 | 122 | 63 | 2 | 401 | 522 | 48 | 155 | 8.75e-16 | 79.7 |
MS.gene033337.t1 | MTR_8g467420 | 77.165 | 127 | 29 | 0 | 2 | 128 | 5 | 131 | 2.26e-47 | 166 |
MS.gene033337.t1 | MTR_1g070355 | 32.683 | 205 | 136 | 1 | 66 | 270 | 65 | 267 | 4.43e-33 | 135 |
MS.gene033337.t1 | MTR_5g076070 | 30.392 | 204 | 140 | 1 | 67 | 270 | 45 | 246 | 1.17e-29 | 119 |
MS.gene033337.t1 | MTR_0645s0010 | 41.129 | 124 | 70 | 1 | 317 | 440 | 1 | 121 | 5.69e-27 | 106 |
MS.gene033337.t1 | MTR_6g022080 | 29.070 | 172 | 122 | 0 | 66 | 237 | 76 | 247 | 2.16e-22 | 97.4 |
MS.gene033337.t1 | MTR_0402s0040 | 32.243 | 214 | 120 | 7 | 43 | 251 | 7 | 200 | 1.90e-21 | 99.0 |
MS.gene033337.t1 | MTR_6g051425 | 28.571 | 189 | 131 | 3 | 85 | 270 | 27 | 214 | 8.67e-21 | 94.7 |
MS.gene033337.t1 | MTR_4g035820 | 28.425 | 292 | 188 | 9 | 81 | 357 | 81 | 366 | 1.30e-20 | 97.4 |
MS.gene033337.t1 | MTR_8g468460 | 41.837 | 98 | 56 | 1 | 361 | 458 | 9 | 105 | 1.71e-16 | 76.3 |
MS.gene033337.t1 | MTR_6g022070 | 30.657 | 137 | 95 | 0 | 276 | 412 | 38 | 174 | 1.63e-14 | 75.9 |
MS.gene033337.t1 | MTR_1g008290 | 30.894 | 123 | 80 | 2 | 135 | 257 | 10 | 127 | 1.78e-14 | 71.6 |
MS.gene033337.t1 | MTR_6g053140 | 28.409 | 176 | 111 | 4 | 15 | 186 | 40 | 204 | 2.25e-13 | 70.5 |
MS.gene033337.t1 | MTR_0060s0090 | 32.812 | 128 | 77 | 2 | 30 | 157 | 20 | 138 | 1.61e-12 | 66.2 |
MS.gene033337.t1 | MTR_3g080590 | 49.123 | 57 | 29 | 0 | 68 | 124 | 98 | 154 | 3.04e-11 | 62.8 |
MS.gene033337.t1 | MTR_5g015480 | 33.588 | 131 | 80 | 3 | 69 | 196 | 50 | 176 | 3.78e-11 | 64.7 |
MS.gene033337.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 46 | 170 | 4.86e-11 | 63.5 |
MS.gene033337.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 36 | 160 | 6.33e-11 | 62.8 |
MS.gene033337.t1 | MTR_7g074790 | 30.120 | 166 | 95 | 3 | 77 | 242 | 12 | 156 | 7.95e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033337.t1 | AT4G38180 | 28.409 | 264 | 186 | 2 | 276 | 537 | 412 | 674 | 1.60e-30 | 129 |
MS.gene033337.t1 | AT4G38180 | 32.472 | 271 | 163 | 7 | 12 | 275 | 16 | 273 | 5.32e-23 | 105 |
MS.gene033337.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 8.25e-24 | 107 |
MS.gene033337.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.79e-12 | 69.7 |
MS.gene033337.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 8.25e-24 | 107 |
MS.gene033337.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.79e-12 | 69.7 |
MS.gene033337.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 8.25e-24 | 107 |
MS.gene033337.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.79e-12 | 69.7 |
MS.gene033337.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 8.25e-24 | 107 |
MS.gene033337.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.79e-12 | 69.7 |
MS.gene033337.t1 | AT4G15090 | 25.000 | 264 | 185 | 5 | 276 | 535 | 388 | 642 | 8.25e-24 | 107 |
MS.gene033337.t1 | AT4G15090 | 24.206 | 252 | 177 | 7 | 32 | 274 | 2 | 248 | 6.79e-12 | 69.7 |
MS.gene033337.t1 | AT4G38170 | 26.047 | 215 | 158 | 1 | 285 | 499 | 186 | 399 | 2.16e-23 | 105 |
MS.gene033337.t1 | AT3G06250 | 28.214 | 280 | 185 | 6 | 276 | 548 | 485 | 755 | 2.55e-23 | 106 |
MS.gene033337.t1 | AT3G06250 | 28.214 | 280 | 185 | 6 | 276 | 548 | 485 | 755 | 2.55e-23 | 106 |
MS.gene033337.t1 | AT3G06250 | 28.214 | 280 | 185 | 6 | 276 | 548 | 485 | 755 | 2.55e-23 | 106 |
MS.gene033337.t1 | AT3G22170 | 27.170 | 265 | 179 | 5 | 276 | 536 | 397 | 651 | 6.18e-23 | 105 |
MS.gene033337.t1 | AT3G22170 | 27.170 | 265 | 179 | 5 | 276 | 536 | 397 | 651 | 6.18e-23 | 105 |
MS.gene033337.t1 | AT5G18960 | 27.465 | 284 | 182 | 7 | 276 | 548 | 509 | 779 | 3.27e-22 | 102 |
MS.gene033337.t1 | AT5G18960 | 27.465 | 284 | 182 | 7 | 276 | 548 | 509 | 779 | 3.27e-22 | 102 |
MS.gene033337.t1 | AT2G27110 | 28.216 | 241 | 150 | 7 | 273 | 501 | 352 | 581 | 4.01e-21 | 99.4 |
MS.gene033337.t1 | AT2G27110 | 28.216 | 241 | 150 | 7 | 273 | 501 | 352 | 581 | 4.01e-21 | 99.4 |
MS.gene033337.t1 | AT2G27110 | 28.216 | 241 | 150 | 7 | 273 | 501 | 207 | 436 | 4.65e-21 | 99.0 |
MS.gene033337.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 4.70e-21 | 98.6 |
MS.gene033337.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 4.70e-21 | 99.0 |
MS.gene033337.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 4.70e-21 | 99.0 |
MS.gene033337.t1 | AT1G76320 | 25.974 | 308 | 205 | 6 | 278 | 574 | 327 | 622 | 4.85e-21 | 99.0 |
MS.gene033337.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 9.81e-20 | 94.7 |
MS.gene033337.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 9.81e-20 | 94.7 |
MS.gene033337.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 277 | 502 | 1.22e-19 | 94.4 |
MS.gene033337.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 1.47e-19 | 94.4 |
MS.gene033337.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 1.47e-19 | 94.4 |
MS.gene033337.t1 | AT4G19990 | 25.974 | 231 | 163 | 4 | 274 | 500 | 348 | 574 | 1.56e-19 | 94.0 |
MS.gene033337.t1 | AT4G19990 | 26.087 | 230 | 162 | 4 | 274 | 499 | 334 | 559 | 1.57e-19 | 94.0 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 6.15e-19 | 92.4 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 6.15e-19 | 92.4 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 6.28e-19 | 92.4 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 6.28e-19 | 92.4 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 6.28e-19 | 92.4 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 246 | 550 | 7.30e-19 | 92.0 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 246 | 550 | 7.73e-19 | 92.0 |
MS.gene033337.t1 | AT2G32250 | 24.843 | 318 | 217 | 7 | 240 | 548 | 287 | 591 | 9.83e-19 | 91.7 |
MS.gene033337.t1 | AT1G52520 | 26.000 | 250 | 171 | 5 | 275 | 513 | 407 | 653 | 2.79e-17 | 86.7 |
MS.gene033337.t1 | AT1G80010 | 25.896 | 251 | 165 | 6 | 275 | 512 | 432 | 674 | 1.18e-16 | 84.7 |
MS.gene033337.t1 | AT1G10240 | 30.918 | 207 | 125 | 7 | 47 | 239 | 14 | 216 | 3.10e-15 | 80.1 |
MS.gene033337.t1 | AT1G10240 | 25.000 | 268 | 154 | 8 | 273 | 518 | 384 | 626 | 4.24e-14 | 76.6 |
MS.gene033337.t1 | AT1G10240 | 30.918 | 207 | 125 | 7 | 47 | 239 | 14 | 216 | 3.10e-15 | 80.1 |
MS.gene033337.t1 | AT1G10240 | 25.000 | 268 | 154 | 8 | 273 | 518 | 384 | 626 | 4.24e-14 | 76.6 |
MS.gene033337.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 8.54e-14 | 75.5 |
MS.gene033337.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 8.67e-14 | 75.5 |
MS.gene033337.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.01e-13 | 75.5 |
MS.gene033337.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.07e-13 | 75.1 |
MS.gene033337.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.07e-13 | 75.1 |
Find 111 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATTCTTAAACTTGAATT+TGG | 0.181995 | 8.2:+20491295 | MS.gene033337:CDS |
ACCACCATGAAGTCCATAAT+TGG | 0.210507 | 8.2:-20493737 | None:intergenic |
CAAGCAATTTACCCCAATTA+TGG | 0.222640 | 8.2:+20493724 | MS.gene033337:CDS |
GTTGCGTTCTTCTTCTTCTT+TGG | 0.224742 | 8.2:-20493215 | None:intergenic |
TATTTACGTGATAAGTTCTT+TGG | 0.228072 | 8.2:+20492435 | MS.gene033337:CDS |
GTCATGAATGTTGCTGGTTT+TGG | 0.255328 | 8.2:+20493796 | MS.gene033337:CDS |
CGGAGCAATTTGAGGAGTTT+TGG | 0.270030 | 8.2:+20492328 | MS.gene033337:CDS |
AATCAAAACCTGTCATATAA+TGG | 0.273083 | 8.2:+20491696 | MS.gene033337:CDS |
AGAAGTTAAAGATGAAATTA+TGG | 0.274889 | 8.2:+20492692 | MS.gene033337:CDS |
CTGTCATATAATGGGATATA+TGG | 0.287437 | 8.2:+20491705 | MS.gene033337:CDS |
AACTTCCTGTGTTGGGCTCT+TGG | 0.288676 | 8.2:+20493768 | MS.gene033337:CDS |
CTTGTGCTAGCATTGCCATT+AGG | 0.324197 | 8.2:-20493574 | None:intergenic |
GCCTTGCTTCGCAATTTGTT+CGG | 0.326898 | 8.2:-20491510 | None:intergenic |
TACCCCAATTATGGACTTCA+TGG | 0.332590 | 8.2:+20493733 | MS.gene033337:CDS |
CCTTGCTTCGCAATTTGTTC+GGG | 0.333508 | 8.2:-20491509 | None:intergenic |
ATGATTGAACTTGCTCGATT+TGG | 0.365589 | 8.2:+20493014 | MS.gene033337:CDS |
CCATTAGGAAAGGTGATGTT+AGG | 0.366141 | 8.2:+20491374 | MS.gene033337:CDS |
ATCAAAACCTGTCATATAAT+GGG | 0.369316 | 8.2:+20491697 | MS.gene033337:CDS |
TGATCACATACCAGAATGTT+TGG | 0.370163 | 8.2:+20492917 | MS.gene033337:CDS |
TACTCAGTCTAAAAGTTATC+AGG | 0.373452 | 8.2:+20493157 | MS.gene033337:CDS |
ATTTACGTGGGGTTACTTCA+TGG | 0.380615 | 8.2:-20491597 | None:intergenic |
TCAGCTGTCTCCGGAATCTC+TGG | 0.384192 | 8.2:-20493631 | None:intergenic |
GGTTGAACTACATTTGTAAC+TGG | 0.389125 | 8.2:-20493658 | None:intergenic |
ACTTCAATATAATGAAGAAT+TGG | 0.390431 | 8.2:+20493416 | MS.gene033337:CDS |
GTAAAATTTCTGAAGCAGAT+AGG | 0.391444 | 8.2:+20491644 | MS.gene033337:CDS |
GATCTCTGCTGTGTAAATTC+TGG | 0.392583 | 8.2:-20492664 | None:intergenic |
CCTAACATCACCTTTCCTAA+TGG | 0.392597 | 8.2:-20491374 | None:intergenic |
GCACAAGTCATGAATGTTGC+TGG | 0.402938 | 8.2:+20493790 | MS.gene033337:CDS |
TCATACCGCAAGGCATTGTT+TGG | 0.406615 | 8.2:+20493277 | MS.gene033337:CDS |
CCACCATGAAGTCCATAATT+GGG | 0.409599 | 8.2:-20493736 | None:intergenic |
CAGTTTGTGTGCAACAAGAA+TGG | 0.415144 | 8.2:+20491427 | MS.gene033337:CDS |
GAGACAAGAAGCACTTATCT+AGG | 0.423504 | 8.2:+20491455 | MS.gene033337:CDS |
AATCATCAACTTCCTGTGTT+GGG | 0.424191 | 8.2:+20493761 | MS.gene033337:CDS |
CGTGTCATAACCAAACATTC+TGG | 0.425974 | 8.2:-20492927 | None:intergenic |
GGAACACCACAAAGACTGTT+TGG | 0.430519 | 8.2:+20491075 | MS.gene033337:CDS |
TTCTGAACAGCGATTCCAAT+GGG | 0.432579 | 8.2:+20492976 | MS.gene033337:CDS |
TGACTTTAAATCAAAATTCA+CGG | 0.435713 | 8.2:+20492596 | MS.gene033337:CDS |
GTATTCTTCTTCACTGGAAT+CGG | 0.437019 | 8.2:-20491101 | None:intergenic |
ATCTGTGTATTCTTCTTCAC+TGG | 0.444466 | 8.2:-20491107 | None:intergenic |
TAAATTGCTTGCATTTCCAT+TGG | 0.446330 | 8.2:-20493712 | None:intergenic |
CCAGGTTGCAACACATTCAC+AGG | 0.453864 | 8.2:-20493682 | None:intergenic |
GATACCATGGTTTATACATT+GGG | 0.461449 | 8.2:+20492756 | MS.gene033337:CDS |
TGAACTTGAAGGAAATGCTT+GGG | 0.462518 | 8.2:+20492371 | MS.gene033337:CDS |
GAATCATCAACTTCCTGTGT+TGG | 0.463071 | 8.2:+20493760 | MS.gene033337:CDS |
ATTCAGAAGAATGAACTTGA+AGG | 0.466546 | 8.2:+20492360 | MS.gene033337:CDS |
ATTAGCATCTATTTCCCCAT+TGG | 0.467480 | 8.2:-20492991 | None:intergenic |
AGCACTTATCTAGGAATGAT+AGG | 0.468246 | 8.2:+20491464 | MS.gene033337:CDS |
AGTTTGTGTGCAACAAGAAT+GGG | 0.470588 | 8.2:+20491428 | MS.gene033337:CDS |
TAAAATTTCTGAAGCAGATA+GGG | 0.473779 | 8.2:+20491645 | MS.gene033337:CDS |
AAGAATTTCATCAGAGGCAA+TGG | 0.477228 | 8.2:-20491281 | None:intergenic |
ATGAACTTGAAGGAAATGCT+TGG | 0.479360 | 8.2:+20492370 | MS.gene033337:CDS |
GGGATATATGGTTGCTCAGA+AGG | 0.480775 | 8.2:+20491717 | MS.gene033337:CDS |
CATATATCCCATTATATGAC+AGG | 0.494595 | 8.2:-20491704 | None:intergenic |
CCTTTGCTCTTCACAGTGAC+CGG | 0.495645 | 8.2:-20493188 | None:intergenic |
GGATACCATGGTTTATACAT+TGG | 0.504775 | 8.2:+20492755 | MS.gene033337:CDS |
AAGTTATCAGGTAGGTGATC+CGG | 0.508654 | 8.2:+20493169 | MS.gene033337:CDS |
ACTGGCAAATCAGCTGTCTC+CGG | 0.514020 | 8.2:-20493640 | None:intergenic |
TTGGGAAAATATCGTGAGAA+AGG | 0.514905 | 8.2:+20492774 | MS.gene033337:CDS |
GATGCTGAAGATGATGTTGA+TGG | 0.520081 | 8.2:+20491166 | MS.gene033337:CDS |
CGTTGGACAAAGAACGCAAA+AGG | 0.525733 | 8.2:+20492948 | MS.gene033337:CDS |
CGGAGTCCAAACAGTCTTTG+TGG | 0.529107 | 8.2:-20491081 | None:intergenic |
ATTTCCATTGGAAATTTACC+AGG | 0.529349 | 8.2:-20493700 | None:intergenic |
TATCGTTATGGAAAATGCAA+AGG | 0.529410 | 8.2:+20491346 | MS.gene033337:CDS |
CAAGCAAAAGAAATGTAAAG+AGG | 0.532177 | 8.2:+20493597 | MS.gene033337:CDS |
CAAAACTCCTCAAATTGCTC+CGG | 0.533339 | 8.2:-20492327 | None:intergenic |
GCGATGCATTAGCAAGTGAC+AGG | 0.533703 | 8.2:+20491242 | MS.gene033337:CDS |
CTTGATGCTCTTCAATCACA+TGG | 0.535182 | 8.2:+20491673 | MS.gene033337:CDS |
TGATTGAAGAGCATCAAGTT+GGG | 0.536427 | 8.2:-20491668 | None:intergenic |
AAGGGTGGATATACTGATGT+AGG | 0.538008 | 8.2:+20491736 | MS.gene033337:CDS |
GTGATTGAAGAGCATCAAGT+TGG | 0.540889 | 8.2:-20491669 | None:intergenic |
CCTGTGAATGTGTTGCAACC+TGG | 0.546145 | 8.2:+20493682 | MS.gene033337:CDS |
AAAGATGAAATTATGGATGC+TGG | 0.553017 | 8.2:+20492699 | MS.gene033337:CDS |
CCCGAACAAATTGCGAAGCA+AGG | 0.553648 | 8.2:+20491509 | MS.gene033337:CDS |
GCAACCTGGTAAATTTCCAA+TGG | 0.569433 | 8.2:+20493696 | MS.gene033337:CDS |
GATGTTAGGCGCAATAGTAG+TGG | 0.581865 | 8.2:+20491388 | MS.gene033337:CDS |
AAGACATATTCTAGAGCCAA+AGG | 0.582373 | 8.2:+20492504 | MS.gene033337:CDS |
AGCATATAACATTGGATCGG+TGG | 0.585153 | 8.2:-20491863 | None:intergenic |
GGATATATGGTTGCTCAGAA+GGG | 0.589834 | 8.2:+20491718 | MS.gene033337:CDS |
GATAGCTTCACATTGAGATG+TGG | 0.595390 | 8.2:-20492469 | None:intergenic |
TTTCTGAACAGCGATTCCAA+TGG | 0.598192 | 8.2:+20492975 | MS.gene033337:CDS |
GCAAGTGTGTAAATTTACGT+GGG | 0.600179 | 8.2:-20491609 | None:intergenic |
TGATGAATCAGTTCAACAAG+AGG | 0.603374 | 8.2:+20491210 | MS.gene033337:CDS |
CCGGTCACTGTGAAGAGCAA+AGG | 0.613504 | 8.2:+20493188 | MS.gene033337:CDS |
TATATGGTTGCTCAGAAGGG+TGG | 0.613989 | 8.2:+20491721 | MS.gene033337:CDS |
TTCAGCATATAACATTGGAT+CGG | 0.614583 | 8.2:-20491866 | None:intergenic |
TGCTGGTGCAATACGTCTCG+AGG | 0.619998 | 8.2:+20492716 | MS.gene033337:CDS |
AAGTTTAAGAATTTCATCAG+AGG | 0.626746 | 8.2:-20491287 | None:intergenic |
CACCATGAAGTCCATAATTG+GGG | 0.627752 | 8.2:-20493735 | None:intergenic |
CCCAATTATGGACTTCATGG+TGG | 0.629190 | 8.2:+20493736 | MS.gene033337:CDS |
GTGCATTACAAAGCTAAACA+AGG | 0.632644 | 8.2:+20491538 | MS.gene033337:CDS |
TCGTATTCAGCATATAACAT+TGG | 0.632685 | 8.2:-20491871 | None:intergenic |
CAGTCTAAAAGTTATCAGGT+AGG | 0.641408 | 8.2:+20493161 | MS.gene033337:CDS |
TGCAAGTGTGTAAATTTACG+TGG | 0.643723 | 8.2:-20491610 | None:intergenic |
ATGCGCGATGTCATTAAAGA+CGG | 0.646118 | 8.2:+20491799 | MS.gene033337:CDS |
AAAGTACAAGTCATACCGCA+AGG | 0.649575 | 8.2:+20493267 | MS.gene033337:CDS |
GAACTTATCACGTAAATATG+CGG | 0.655600 | 8.2:-20492430 | None:intergenic |
TGTAGACTATTCGAGTCACG+TGG | 0.658455 | 8.2:+20492849 | MS.gene033337:CDS |
TTGTGCCAAGAGCCCAACAC+AGG | 0.660751 | 8.2:-20493773 | None:intergenic |
TGCATTACAAAGCTAAACAA+GGG | 0.661066 | 8.2:+20491539 | MS.gene033337:CDS |
AATGTTTGGTTATGACACGT+TGG | 0.662725 | 8.2:+20492931 | MS.gene033337:CDS |
ATATGCGAACAAGTCACTGT+GGG | 0.664385 | 8.2:+20492404 | MS.gene033337:CDS |
GATGAATCAGTTCAACAAGA+GGG | 0.669122 | 8.2:+20491211 | MS.gene033337:CDS |
CGCAGGTGAGTTGACAACAC+AGG | 0.673245 | 8.2:-20492621 | None:intergenic |
CATCACTCTCAATCAAACGC+AGG | 0.673784 | 8.2:-20492638 | None:intergenic |
GGTTGCAACACATTCACAGG+AGG | 0.686316 | 8.2:-20493679 | None:intergenic |
CAAGTGTGTAAATTTACGTG+GGG | 0.688606 | 8.2:-20491608 | None:intergenic |
GTAGTGGAATAATTACAATG+AGG | 0.704741 | 8.2:+20491404 | MS.gene033337:CDS |
TCTGAACAGCGATTCCAATG+GGG | 0.714485 | 8.2:+20492977 | MS.gene033337:CDS |
CATATGCGAACAAGTCACTG+TGG | 0.716941 | 8.2:+20492403 | MS.gene033337:CDS |
AATTACCAAACAATGCCTTG+CGG | 0.726793 | 8.2:-20493282 | None:intergenic |
GTAGACTATTCGAGTCACGT+GGG | 0.777031 | 8.2:+20492850 | MS.gene033337:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTATAATTCTTAATTCA+TGG | - | chr8.2:20493338-20493357 | None:intergenic | 15.0% |
!!! | CAATTTTTTTTTTTTTTTGC+AGG | + | chr8.2:20493377-20493396 | MS.gene033337:intron | 15.0% |
!!! | TATGAATTTTATTATCGTTA+TGG | + | chr8.2:20491334-20491353 | MS.gene033337:CDS | 15.0% |
!! | AAAAAGAAAAGAAAACCTAA+TGG | + | chr8.2:20493559-20493578 | MS.gene033337:CDS | 20.0% |
!! | ACTTCAATATAATGAAGAAT+TGG | + | chr8.2:20493416-20493435 | MS.gene033337:CDS | 20.0% |
!! | AGAAGTTAAAGATGAAATTA+TGG | + | chr8.2:20492692-20492711 | MS.gene033337:CDS | 20.0% |
!! | ATCTAATATTGTTGCATAAA+AGG | - | chr8.2:20493501-20493520 | None:intergenic | 20.0% |
!! | GAAATTCTTAAACTTGAATT+TGG | + | chr8.2:20491295-20491314 | MS.gene033337:CDS | 20.0% |
!! | TGACTTTAAATCAAAATTCA+CGG | + | chr8.2:20492596-20492615 | MS.gene033337:CDS | 20.0% |
!!! | AAAAAAGAATGGTGTTTTTA+GGG | + | chr8.2:20493079-20493098 | MS.gene033337:CDS | 20.0% |
!!! | AAATTCAAAAATTTTGCCTT+TGG | - | chr8.2:20492523-20492542 | None:intergenic | 20.0% |
!!! | ACAAATATACTTTCTCTTTT+TGG | - | chr8.2:20493470-20493489 | None:intergenic | 20.0% |
!!! | ATTTATGCATAATTTTGAAC+AGG | + | chr8.2:20492539-20492558 | MS.gene033337:CDS | 20.0% |
!!! | TTTCCATACATTCTAAAAAA+CGG | - | chr8.2:20492125-20492144 | None:intergenic | 20.0% |
! | AAGTTTAAGAATTTCATCAG+AGG | - | chr8.2:20491290-20491309 | None:intergenic | 25.0% |
! | AATCAAAACCTGTCATATAA+TGG | + | chr8.2:20491696-20491715 | MS.gene033337:CDS | 25.0% |
! | ATCAAAACCTGTCATATAAT+GGG | + | chr8.2:20491697-20491716 | MS.gene033337:CDS | 25.0% |
! | TATAAAGAAAACACCATTTC+TGG | + | chr8.2:20492269-20492288 | MS.gene033337:intron | 25.0% |
! | TATTTACGTGATAAGTTCTT+TGG | + | chr8.2:20492435-20492454 | MS.gene033337:CDS | 25.0% |
!! | AAGAATGAAAAGACTGTTTT+GGG | + | chr8.2:20491909-20491928 | MS.gene033337:intron | 25.0% |
!! | AATGTACTCAAATTTTACAC+CGG | + | chr8.2:20492308-20492327 | MS.gene033337:CDS | 25.0% |
!! | CAAAAAAGAATGGTGTTTTT+AGG | + | chr8.2:20493078-20493097 | MS.gene033337:CDS | 25.0% |
!! | CATAATTTTGAACAGGTTTT+GGG | + | chr8.2:20492546-20492565 | MS.gene033337:CDS | 25.0% |
!!! | AAAAACACCATTCTTTTTTG+AGG | - | chr8.2:20493078-20493097 | None:intergenic | 25.0% |
!!! | AGGTCTGATTATTTTTGTTT+TGG | + | chr8.2:20491946-20491965 | MS.gene033337:intron | 25.0% |
!!! | TAAAATTTCTGAAGCAGATA+GGG | + | chr8.2:20491645-20491664 | MS.gene033337:CDS | 25.0% |
AAACAATCGAGTCATATAAG+TGG | + | chr8.2:20492091-20492110 | MS.gene033337:intron | 30.0% | |
AAAGAAGCCTCAAAAAAGAA+TGG | + | chr8.2:20493068-20493087 | MS.gene033337:CDS | 30.0% | |
AAAGATGAAATTATGGATGC+TGG | + | chr8.2:20492699-20492718 | MS.gene033337:CDS | 30.0% | |
AACAAAAATTCCAGAGATTC+CGG | + | chr8.2:20493621-20493640 | MS.gene033337:CDS | 30.0% | |
AACAATCGAGTCATATAAGT+GGG | + | chr8.2:20492092-20492111 | MS.gene033337:intron | 30.0% | |
ACAAAAAAGACATGACAACA+TGG | - | chr8.2:20492879-20492898 | None:intergenic | 30.0% | |
ATTCAGAAGAATGAACTTGA+AGG | + | chr8.2:20492360-20492379 | MS.gene033337:CDS | 30.0% | |
ATTTCCATTGGAAATTTACC+AGG | - | chr8.2:20493703-20493722 | None:intergenic | 30.0% | |
CAAATATAATGGTCTGTGAA+TGG | - | chr8.2:20492050-20492069 | None:intergenic | 30.0% | |
CAAGCAAAAGAAATGTAAAG+AGG | + | chr8.2:20493597-20493616 | MS.gene033337:CDS | 30.0% | |
CATATATCCCATTATATGAC+AGG | - | chr8.2:20491707-20491726 | None:intergenic | 30.0% | |
CATTCACAGACCATTATATT+TGG | + | chr8.2:20492048-20492067 | MS.gene033337:intron | 30.0% | |
GAACTTATCACGTAAATATG+CGG | - | chr8.2:20492433-20492452 | None:intergenic | 30.0% | |
GATACCATGGTTTATACATT+GGG | + | chr8.2:20492756-20492775 | MS.gene033337:CDS | 30.0% | |
TAAATTGCTTGCATTTCCAT+TGG | - | chr8.2:20493715-20493734 | None:intergenic | 30.0% | |
TACTCAGTCTAAAAGTTATC+AGG | + | chr8.2:20493157-20493176 | MS.gene033337:CDS | 30.0% | |
TATCGTTATGGAAAATGCAA+AGG | + | chr8.2:20491346-20491365 | MS.gene033337:CDS | 30.0% | |
TCGTATTCAGCATATAACAT+TGG | - | chr8.2:20491874-20491893 | None:intergenic | 30.0% | |
TGCATTACAAAGCTAAACAA+GGG | + | chr8.2:20491539-20491558 | MS.gene033337:CDS | 30.0% | |
TTCAGCATATAACATTGGAT+CGG | - | chr8.2:20491869-20491888 | None:intergenic | 30.0% | |
! | AAAGGTTTTTCCATTAGGAA+AGG | + | chr8.2:20491364-20491383 | MS.gene033337:CDS | 30.0% |
! | AATGCAAAGGTTTTTCCATT+AGG | + | chr8.2:20491359-20491378 | MS.gene033337:CDS | 30.0% |
! | ATCCGTTGTGTATATTTTCT+GGG | + | chr8.2:20492016-20492035 | MS.gene033337:intron | 30.0% |
! | CAGAAATTTTACGATACAGT+GGG | - | chr8.2:20491636-20491655 | None:intergenic | 30.0% |
! | CTGTCATATAATGGGATATA+TGG | + | chr8.2:20491705-20491724 | MS.gene033337:CDS | 30.0% |
! | GAAGAATGAAAAGACTGTTT+TGG | + | chr8.2:20491908-20491927 | MS.gene033337:intron | 30.0% |
! | GCATAATTTTGAACAGGTTT+TGG | + | chr8.2:20492545-20492564 | MS.gene033337:CDS | 30.0% |
! | GTAGTGGAATAATTACAATG+AGG | + | chr8.2:20491404-20491423 | MS.gene033337:CDS | 30.0% |
! | TATCCGTTGTGTATATTTTC+TGG | + | chr8.2:20492015-20492034 | MS.gene033337:intron | 30.0% |
! | TCAGAAATTTTACGATACAG+TGG | - | chr8.2:20491637-20491656 | None:intergenic | 30.0% |
! | TTTTCCCAATGTATAAACCA+TGG | - | chr8.2:20492763-20492782 | None:intergenic | 30.0% |
!! | GTAAAATTTCTGAAGCAGAT+AGG | + | chr8.2:20491644-20491663 | MS.gene033337:CDS | 30.0% |
!!! | GAACCGTTTTTTAGAATGTA+TGG | + | chr8.2:20492119-20492138 | MS.gene033337:intron | 30.0% |
!!! | TCATGTCTTTTTTGTGATGA+AGG | + | chr8.2:20492884-20492903 | MS.gene033337:CDS | 30.0% |
AAGAATTTCATCAGAGGCAA+TGG | - | chr8.2:20491284-20491303 | None:intergenic | 35.0% | |
AATCATCAACTTCCTGTGTT+GGG | + | chr8.2:20493761-20493780 | MS.gene033337:CDS | 35.0% | |
AATGAGGGAAGCTATTAAAC+AGG | + | chr8.2:20492185-20492204 | MS.gene033337:intron | 35.0% | |
AATGTTTGGTTATGACACGT+TGG | + | chr8.2:20492931-20492950 | MS.gene033337:CDS | 35.0% | |
AATTACCAAACAATGCCTTG+CGG | - | chr8.2:20493285-20493304 | None:intergenic | 35.0% | |
AGCACTTATCTAGGAATGAT+AGG | + | chr8.2:20491464-20491483 | MS.gene033337:CDS | 35.0% | |
AGTTTGTGTGCAACAAGAAT+GGG | + | chr8.2:20491428-20491447 | MS.gene033337:CDS | 35.0% | |
ATATAATGGTCTGTGAATGG+TGG | - | chr8.2:20492047-20492066 | None:intergenic | 35.0% | |
ATCTGTGTATTCTTCTTCAC+TGG | - | chr8.2:20491110-20491129 | None:intergenic | 35.0% | |
ATGAACTTGAAGGAAATGCT+TGG | + | chr8.2:20492370-20492389 | MS.gene033337:CDS | 35.0% | |
ATTAGCATCTATTTCCCCAT+TGG | - | chr8.2:20492994-20493013 | None:intergenic | 35.0% | |
CAACGCAACACCAAATATAA+TGG | - | chr8.2:20492061-20492080 | None:intergenic | 35.0% | |
CAAGCAATTTACCCCAATTA+TGG | + | chr8.2:20493724-20493743 | MS.gene033337:CDS | 35.0% | |
CAAGTGTGTAAATTTACGTG+GGG | - | chr8.2:20491611-20491630 | None:intergenic | 35.0% | |
CACCCAGAAAATATACACAA+CGG | - | chr8.2:20492021-20492040 | None:intergenic | 35.0% | |
CAGTCTAAAAGTTATCAGGT+AGG | + | chr8.2:20493161-20493180 | MS.gene033337:CDS | 35.0% | |
GAATACGATGTCAACAATGA+TGG | + | chr8.2:20491886-20491905 | MS.gene033337:intron | 35.0% | |
GATGAATCAGTTCAACAAGA+GGG | + | chr8.2:20491211-20491230 | MS.gene033337:CDS | 35.0% | |
GCAAGTGTGTAAATTTACGT+GGG | - | chr8.2:20491612-20491631 | None:intergenic | 35.0% | |
GGATACCATGGTTTATACAT+TGG | + | chr8.2:20492755-20492774 | MS.gene033337:CDS | 35.0% | |
GGTTGAACTACATTTGTAAC+TGG | - | chr8.2:20493661-20493680 | None:intergenic | 35.0% | |
GTATTCTTCTTCACTGGAAT+CGG | - | chr8.2:20491104-20491123 | None:intergenic | 35.0% | |
GTGCATTACAAAGCTAAACA+AGG | + | chr8.2:20491538-20491557 | MS.gene033337:CDS | 35.0% | |
TGAACTTGAAGGAAATGCTT+GGG | + | chr8.2:20492371-20492390 | MS.gene033337:CDS | 35.0% | |
TGATCACATACCAGAATGTT+TGG | + | chr8.2:20492917-20492936 | MS.gene033337:CDS | 35.0% | |
TGATGAATCAGTTCAACAAG+AGG | + | chr8.2:20491210-20491229 | MS.gene033337:CDS | 35.0% | |
TGCAAGTGTGTAAATTTACG+TGG | - | chr8.2:20491613-20491632 | None:intergenic | 35.0% | |
TTGGGAAAATATCGTGAGAA+AGG | + | chr8.2:20492774-20492793 | MS.gene033337:CDS | 35.0% | |
! | AAAGAAAACACCATTTCTGG+AGG | + | chr8.2:20492272-20492291 | MS.gene033337:intron | 35.0% |
! | AAGAAAACACCATTTCTGGA+GGG | + | chr8.2:20492273-20492292 | MS.gene033337:intron | 35.0% |
! | ATGATTGAACTTGCTCGATT+TGG | + | chr8.2:20493014-20493033 | MS.gene033337:CDS | 35.0% |
!! | AAGACATATTCTAGAGCCAA+AGG | + | chr8.2:20492504-20492523 | MS.gene033337:CDS | 35.0% |
!! | TATATTTGGTGTTGCGTTGT+TGG | + | chr8.2:20492062-20492081 | MS.gene033337:intron | 35.0% |
!! | TGATTGAAGAGCATCAAGTT+GGG | - | chr8.2:20491671-20491690 | None:intergenic | 35.0% |
!!! | AATTTTGAACAGGTTTTGGG+AGG | + | chr8.2:20492549-20492568 | MS.gene033337:CDS | 35.0% |
!!! | CTTTTTTGTGATGAAGGAAG+AGG | + | chr8.2:20492890-20492909 | MS.gene033337:CDS | 35.0% |
!!! | GTAGTGTCTAGTTTTGTAGA+GGG | + | chr8.2:20491568-20491587 | MS.gene033337:CDS | 35.0% |
!!! | TAGTGTCTAGTTTTGTAGAG+GGG | + | chr8.2:20491569-20491588 | MS.gene033337:CDS | 35.0% |
!!! | TGGTGTTTTTAGGGACATAA+TGG | + | chr8.2:20493088-20493107 | MS.gene033337:CDS | 35.0% |
!!! | TGTAGTGTCTAGTTTTGTAG+AGG | + | chr8.2:20491567-20491586 | MS.gene033337:CDS | 35.0% |
!!! | TTTTTGTTTTGGCGACGTTT+TGG | + | chr8.2:20491957-20491976 | MS.gene033337:intron | 35.0% |
AAAGTACAAGTCATACCGCA+AGG | + | chr8.2:20493267-20493286 | MS.gene033337:CDS | 40.0% | |
AAGGGTGGATATACTGATGT+AGG | + | chr8.2:20491736-20491755 | MS.gene033337:CDS | 40.0% | |
AAGTAAGTTCCCAAAAGCAG+TGG | + | chr8.2:20492143-20492162 | MS.gene033337:intron | 40.0% | |
AAGTTATCAGGTAGGTGATC+CGG | + | chr8.2:20493169-20493188 | MS.gene033337:CDS | 40.0% | |
ACCACCATGAAGTCCATAAT+TGG | - | chr8.2:20493740-20493759 | None:intergenic | 40.0% | |
AGATGGAGATGGATCAATGA+GGG | + | chr8.2:20492170-20492189 | MS.gene033337:intron | 40.0% | |
AGCATATAACATTGGATCGG+TGG | - | chr8.2:20491866-20491885 | None:intergenic | 40.0% | |
ATAAGCGATGAGATGCATCA+GGG | - | chr8.2:20492215-20492234 | None:intergenic | 40.0% | |
ATATGCGAACAAGTCACTGT+GGG | + | chr8.2:20492404-20492423 | MS.gene033337:CDS | 40.0% | |
ATGCGCGATGTCATTAAAGA+CGG | + | chr8.2:20491799-20491818 | MS.gene033337:CDS | 40.0% | |
ATTTACGTGGGGTTACTTCA+TGG | - | chr8.2:20491600-20491619 | None:intergenic | 40.0% | |
CAAAACTCCTCAAATTGCTC+CGG | - | chr8.2:20492330-20492349 | None:intergenic | 40.0% | |
CACCATGAAGTCCATAATTG+GGG | - | chr8.2:20493738-20493757 | None:intergenic | 40.0% | |
CAGTTTGTGTGCAACAAGAA+TGG | + | chr8.2:20491427-20491446 | MS.gene033337:CDS | 40.0% | |
CCACCATGAAGTCCATAATT+GGG | - | chr8.2:20493739-20493758 | None:intergenic | 40.0% | |
CCATTAGGAAAGGTGATGTT+AGG | + | chr8.2:20491374-20491393 | MS.gene033337:CDS | 40.0% | |
CCTAACATCACCTTTCCTAA+TGG | - | chr8.2:20491377-20491396 | None:intergenic | 40.0% | |
CGTGTCATAACCAAACATTC+TGG | - | chr8.2:20492930-20492949 | None:intergenic | 40.0% | |
CTCGAGGACAAAAAATGTGT+GGG | + | chr8.2:20492732-20492751 | MS.gene033337:CDS | 40.0% | |
CTTGATGCTCTTCAATCACA+TGG | + | chr8.2:20491673-20491692 | MS.gene033337:CDS | 40.0% | |
GAATCATCAACTTCCTGTGT+TGG | + | chr8.2:20493760-20493779 | MS.gene033337:CDS | 40.0% | |
GATAGCTTCACATTGAGATG+TGG | - | chr8.2:20492472-20492491 | None:intergenic | 40.0% | |
GATCTCTGCTGTGTAAATTC+TGG | - | chr8.2:20492667-20492686 | None:intergenic | 40.0% | |
GATGCTGAAGATGATGTTGA+TGG | + | chr8.2:20491166-20491185 | MS.gene033337:CDS | 40.0% | |
GCAACCTGGTAAATTTCCAA+TGG | + | chr8.2:20493696-20493715 | MS.gene033337:CDS | 40.0% | |
GGATATATGGTTGCTCAGAA+GGG | + | chr8.2:20491718-20491737 | MS.gene033337:CDS | 40.0% | |
GTTGCGTTCTTCTTCTTCTT+TGG | - | chr8.2:20493218-20493237 | None:intergenic | 40.0% | |
TACCCCAATTATGGACTTCA+TGG | + | chr8.2:20493733-20493752 | MS.gene033337:CDS | 40.0% | |
TCGAGGACAAAAAATGTGTG+GGG | + | chr8.2:20492733-20492752 | MS.gene033337:CDS | 40.0% | |
TCTCGAGGACAAAAAATGTG+TGG | + | chr8.2:20492731-20492750 | MS.gene033337:CDS | 40.0% | |
TTCTGAACAGCGATTCCAAT+GGG | + | chr8.2:20492976-20492995 | MS.gene033337:CDS | 40.0% | |
TTTCTAAACCCCTCCAGAAA+TGG | - | chr8.2:20492285-20492304 | None:intergenic | 40.0% | |
TTTCTGAACAGCGATTCCAA+TGG | + | chr8.2:20492975-20492994 | MS.gene033337:CDS | 40.0% | |
! | AGAAAACACCATTTCTGGAG+GGG | + | chr8.2:20492274-20492293 | MS.gene033337:intron | 40.0% |
! | TTTTACACCGGAGCAATTTG+AGG | + | chr8.2:20492320-20492339 | MS.gene033337:CDS | 40.0% |
!! | AAAAGACTGTTTTGGGCTGA+TGG | + | chr8.2:20491916-20491935 | MS.gene033337:intron | 40.0% |
!! | AAAGACTGTTTTGGGCTGAT+GGG | + | chr8.2:20491917-20491936 | MS.gene033337:intron | 40.0% |
!! | CATCTGTTACCACTGCTTTT+GGG | - | chr8.2:20492155-20492174 | None:intergenic | 40.0% |
!! | GAGACAAGAAGCACTTATCT+AGG | + | chr8.2:20491455-20491474 | MS.gene033337:CDS | 40.0% |
!! | GTGATTGAAGAGCATCAAGT+TGG | - | chr8.2:20491672-20491691 | None:intergenic | 40.0% |
!!! | GTCATGAATGTTGCTGGTTT+TGG | + | chr8.2:20493796-20493815 | MS.gene033337:CDS | 40.0% |
AAAATGTGTGGGGGATACCA+TGG | + | chr8.2:20492743-20492762 | MS.gene033337:CDS | 45.0% | |
CAGATGGAGATGGATCAATG+AGG | + | chr8.2:20492169-20492188 | MS.gene033337:intron | 45.0% | |
CATAAGCGATGAGATGCATC+AGG | - | chr8.2:20492216-20492235 | None:intergenic | 45.0% | |
CATATGCGAACAAGTCACTG+TGG | + | chr8.2:20492403-20492422 | MS.gene033337:CDS | 45.0% | |
CATCACTCTCAATCAAACGC+AGG | - | chr8.2:20492641-20492660 | None:intergenic | 45.0% | |
CCAAAAGCAGTGGTAACAGA+TGG | + | chr8.2:20492153-20492172 | MS.gene033337:intron | 45.0% | |
CCCAATTATGGACTTCATGG+TGG | + | chr8.2:20493736-20493755 | MS.gene033337:CDS | 45.0% | |
CGAGGACAAAAAATGTGTGG+GGG | + | chr8.2:20492734-20492753 | MS.gene033337:CDS | 45.0% | |
CGCATTCTTGTGTAAATGCC+AGG | - | chr8.2:20492241-20492260 | None:intergenic | 45.0% | |
CGTTGGACAAAGAACGCAAA+AGG | + | chr8.2:20492948-20492967 | MS.gene033337:CDS | 45.0% | |
CTTGTGCTAGCATTGCCATT+AGG | - | chr8.2:20493577-20493596 | None:intergenic | 45.0% | |
GATGTTAGGCGCAATAGTAG+TGG | + | chr8.2:20491388-20491407 | MS.gene033337:CDS | 45.0% | |
GCACAAGTCATGAATGTTGC+TGG | + | chr8.2:20493790-20493809 | MS.gene033337:CDS | 45.0% | |
GGAACACCACAAAGACTGTT+TGG | + | chr8.2:20491075-20491094 | MS.gene033337:CDS | 45.0% | |
GGGATATATGGTTGCTCAGA+AGG | + | chr8.2:20491717-20491736 | MS.gene033337:CDS | 45.0% | |
GTAGACTATTCGAGTCACGT+GGG | + | chr8.2:20492850-20492869 | MS.gene033337:CDS | 45.0% | |
TATATGGTTGCTCAGAAGGG+TGG | + | chr8.2:20491721-20491740 | MS.gene033337:CDS | 45.0% | |
TCTGAACAGCGATTCCAATG+GGG | + | chr8.2:20492977-20492996 | MS.gene033337:CDS | 45.0% | |
TGTAGACTATTCGAGTCACG+TGG | + | chr8.2:20492849-20492868 | MS.gene033337:CDS | 45.0% | |
! | CCATCTGTTACCACTGCTTT+TGG | - | chr8.2:20492156-20492175 | None:intergenic | 45.0% |
! | CCTTGCTTCGCAATTTGTTC+GGG | - | chr8.2:20491512-20491531 | None:intergenic | 45.0% |
! | CGGAGCAATTTGAGGAGTTT+TGG | + | chr8.2:20492328-20492347 | MS.gene033337:CDS | 45.0% |
! | GCCTTGCTTCGCAATTTGTT+CGG | - | chr8.2:20491513-20491532 | None:intergenic | 45.0% |
!! | ATTTGGTGTTGCGTTGTTGG+AGG | + | chr8.2:20492065-20492084 | MS.gene033337:intron | 45.0% |
!! | TCATACCGCAAGGCATTGTT+TGG | + | chr8.2:20493277-20493296 | MS.gene033337:CDS | 45.0% |
AACTTCCTGTGTTGGGCTCT+TGG | + | chr8.2:20493768-20493787 | MS.gene033337:CDS | 50.0% | |
ACTGGCAAATCAGCTGTCTC+CGG | - | chr8.2:20493643-20493662 | None:intergenic | 50.0% | |
CATCTCATCGCTTATGTGCC+TGG | + | chr8.2:20492220-20492239 | MS.gene033337:intron | 50.0% | |
CCAGGTTGCAACACATTCAC+AGG | - | chr8.2:20493685-20493704 | None:intergenic | 50.0% | |
CCCGAACAAATTGCGAAGCA+AGG | + | chr8.2:20491509-20491528 | MS.gene033337:CDS | 50.0% | |
CCTGTGAATGTGTTGCAACC+TGG | + | chr8.2:20493682-20493701 | MS.gene033337:CDS | 50.0% | |
CCTTTGCTCTTCACAGTGAC+CGG | - | chr8.2:20493191-20493210 | None:intergenic | 50.0% | |
CGGAGTCCAAACAGTCTTTG+TGG | - | chr8.2:20491084-20491103 | None:intergenic | 50.0% | |
GCAGTGGTAACAGATGGAGA+TGG | + | chr8.2:20492159-20492178 | MS.gene033337:intron | 50.0% | |
GCGATGCATTAGCAAGTGAC+AGG | + | chr8.2:20491242-20491261 | MS.gene033337:CDS | 50.0% | |
GGTTGCAACACATTCACAGG+AGG | - | chr8.2:20493682-20493701 | None:intergenic | 50.0% | |
TTTGGGCTGATGGGAGTAGT+AGG | + | chr8.2:20491926-20491945 | MS.gene033337:intron | 50.0% | |
CCGGTCACTGTGAAGAGCAA+AGG | + | chr8.2:20493188-20493207 | MS.gene033337:CDS | 55.0% | |
TCAGCTGTCTCCGGAATCTC+TGG | - | chr8.2:20493634-20493653 | None:intergenic | 55.0% | |
TGCTGGTGCAATACGTCTCG+AGG | + | chr8.2:20492716-20492735 | MS.gene033337:CDS | 55.0% | |
TTGTGCCAAGAGCCCAACAC+AGG | - | chr8.2:20493776-20493795 | None:intergenic | 55.0% | |
! | CGCAGGTGAGTTGACAACAC+AGG | - | chr8.2:20492624-20492643 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 20491073 | 20493867 | 20491073 | ID=MS.gene033337 |
chr8.2 | mRNA | 20491073 | 20493867 | 20491073 | ID=MS.gene033337.t1;Parent=MS.gene033337 |
chr8.2 | exon | 20491073 | 20491894 | 20491073 | ID=MS.gene033337.t1.exon1;Parent=MS.gene033337.t1 |
chr8.2 | CDS | 20491073 | 20491894 | 20491073 | ID=cds.MS.gene033337.t1;Parent=MS.gene033337.t1 |
chr8.2 | exon | 20492294 | 20493298 | 20492294 | ID=MS.gene033337.t1.exon2;Parent=MS.gene033337.t1 |
chr8.2 | CDS | 20492294 | 20493298 | 20492294 | ID=cds.MS.gene033337.t1;Parent=MS.gene033337.t1 |
chr8.2 | exon | 20493399 | 20493479 | 20493399 | ID=MS.gene033337.t1.exon3;Parent=MS.gene033337.t1 |
chr8.2 | CDS | 20493399 | 20493479 | 20493399 | ID=cds.MS.gene033337.t1;Parent=MS.gene033337.t1 |
chr8.2 | exon | 20493559 | 20493867 | 20493559 | ID=MS.gene033337.t1.exon4;Parent=MS.gene033337.t1 |
chr8.2 | CDS | 20493559 | 20493867 | 20493559 | ID=cds.MS.gene033337.t1;Parent=MS.gene033337.t1 |
Gene Sequence |
Protein sequence |