Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033377.t1 | XP_024634520.1 | 76.8 | 754 | 27 | 1 | 1 | 606 | 1 | 754 | 0.00E+00 | 1099.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033377.t1 | Q9SZL8 | 27.5 | 586 | 254 | 9 | 27 | 448 | 59 | 637 | 1.1e-62 | 242.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033377.t1 | A0A2Z6P1T9 | 59.6 | 735 | 147 | 3 | 20 | 605 | 2 | 735 | 3.1e-236 | 827.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033377.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033377.t1 | MTR_6g048540 | 64.957 | 117 | 41 | 0 | 420 | 536 | 106 | 222 | 3.39e-45 | 160 |
| MS.gene033377.t1 | MTR_6g048540 | 59.055 | 127 | 49 | 2 | 14 | 137 | 5 | 131 | 1.69e-42 | 153 |
| MS.gene033377.t1 | MTR_0853s0010 | 52.083 | 144 | 68 | 1 | 28 | 171 | 16 | 158 | 1.49e-43 | 153 |
| MS.gene033377.t1 | MTR_0734s0010 | 45.641 | 195 | 97 | 5 | 412 | 604 | 1 | 188 | 1.74e-42 | 151 |
| MS.gene033377.t1 | MTR_1g019850 | 55.634 | 142 | 55 | 1 | 32 | 173 | 65 | 198 | 1.05e-40 | 148 |
| MS.gene033377.t1 | MTR_3g020080 | 52.336 | 107 | 30 | 2 | 237 | 339 | 3 | 92 | 5.87e-25 | 101 |
| MS.gene033377.t1 | MTR_4g035820 | 23.981 | 417 | 253 | 15 | 30 | 405 | 68 | 461 | 9.92e-21 | 97.1 |
| MS.gene033377.t1 | MTR_8g466860 | 79.487 | 39 | 8 | 0 | 251 | 289 | 80 | 118 | 7.19e-14 | 68.9 |
| MS.gene033377.t1 | MTR_6g022070 | 31.298 | 131 | 89 | 1 | 222 | 351 | 37 | 167 | 3.54e-13 | 71.6 |
| MS.gene033377.t1 | MTR_3g006370 | 35.897 | 117 | 59 | 5 | 36 | 144 | 49 | 157 | 1.48e-12 | 67.8 |
| MS.gene033377.t1 | MTR_2g024230 | 55.769 | 52 | 23 | 0 | 37 | 88 | 90 | 141 | 4.17e-12 | 65.1 |
| MS.gene033377.t1 | MTR_8g465780 | 26.667 | 150 | 98 | 3 | 258 | 404 | 1 | 141 | 2.35e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033377.t1 | AT4G38180 | 39.301 | 229 | 139 | 0 | 220 | 448 | 409 | 637 | 7.27e-56 | 202 |
| MS.gene033377.t1 | AT4G38180 | 33.173 | 208 | 116 | 7 | 27 | 218 | 59 | 259 | 3.62e-23 | 105 |
| MS.gene033377.t1 | AT2G27110 | 33.231 | 325 | 203 | 5 | 177 | 498 | 171 | 484 | 4.73e-50 | 185 |
| MS.gene033377.t1 | AT2G27110 | 33.231 | 325 | 203 | 5 | 177 | 498 | 316 | 629 | 1.46e-49 | 185 |
| MS.gene033377.t1 | AT2G27110 | 33.231 | 325 | 203 | 5 | 177 | 498 | 316 | 629 | 1.46e-49 | 185 |
| MS.gene033377.t1 | AT4G38170 | 33.906 | 233 | 154 | 0 | 212 | 444 | 166 | 398 | 1.86e-44 | 166 |
| MS.gene033377.t1 | AT4G15090 | 29.532 | 342 | 221 | 5 | 222 | 560 | 387 | 711 | 4.95e-40 | 157 |
| MS.gene033377.t1 | AT4G15090 | 29.532 | 342 | 221 | 5 | 222 | 560 | 387 | 711 | 4.95e-40 | 157 |
| MS.gene033377.t1 | AT4G15090 | 29.532 | 342 | 221 | 5 | 222 | 560 | 387 | 711 | 4.95e-40 | 157 |
| MS.gene033377.t1 | AT4G15090 | 29.532 | 342 | 221 | 5 | 222 | 560 | 387 | 711 | 4.95e-40 | 157 |
| MS.gene033377.t1 | AT4G15090 | 29.532 | 342 | 221 | 5 | 222 | 560 | 387 | 711 | 4.95e-40 | 157 |
| MS.gene033377.t1 | AT3G22170 | 33.632 | 223 | 147 | 1 | 222 | 444 | 396 | 617 | 7.61e-38 | 150 |
| MS.gene033377.t1 | AT3G22170 | 33.632 | 223 | 147 | 1 | 222 | 444 | 396 | 617 | 7.61e-38 | 150 |
| MS.gene033377.t1 | AT3G06250 | 30.341 | 323 | 207 | 6 | 176 | 498 | 450 | 754 | 1.51e-36 | 146 |
| MS.gene033377.t1 | AT3G06250 | 30.341 | 323 | 207 | 6 | 176 | 498 | 450 | 754 | 1.51e-36 | 146 |
| MS.gene033377.t1 | AT3G06250 | 30.341 | 323 | 207 | 6 | 176 | 498 | 450 | 754 | 1.51e-36 | 146 |
| MS.gene033377.t1 | AT5G18960 | 32.130 | 277 | 182 | 3 | 222 | 498 | 508 | 778 | 7.89e-36 | 144 |
| MS.gene033377.t1 | AT5G18960 | 32.130 | 277 | 182 | 3 | 222 | 498 | 508 | 778 | 7.89e-36 | 144 |
| MS.gene033377.t1 | AT1G76320 | 27.368 | 380 | 252 | 8 | 192 | 562 | 299 | 663 | 1.49e-35 | 142 |
| MS.gene033377.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 5.29e-11 | 66.2 |
| MS.gene033377.t1 | AT1G76320 | 27.368 | 380 | 252 | 8 | 192 | 562 | 299 | 663 | 1.56e-35 | 142 |
| MS.gene033377.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 5.25e-11 | 66.2 |
| MS.gene033377.t1 | AT1G76320 | 27.368 | 380 | 252 | 8 | 192 | 562 | 299 | 663 | 1.56e-35 | 142 |
| MS.gene033377.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 5.25e-11 | 66.2 |
| MS.gene033377.t1 | AT1G76320 | 27.632 | 380 | 251 | 8 | 192 | 562 | 299 | 663 | 1.62e-35 | 142 |
| MS.gene033377.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 6.08e-11 | 65.9 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 278 | 509 | 4.98e-35 | 141 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 335 | 566 | 5.06e-35 | 141 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 335 | 566 | 5.06e-35 | 141 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 335 | 566 | 5.57e-35 | 141 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 335 | 566 | 5.57e-35 | 141 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 335 | 566 | 6.31e-35 | 141 |
| MS.gene033377.t1 | AT4G19990 | 34.335 | 233 | 151 | 2 | 222 | 453 | 349 | 580 | 6.87e-35 | 141 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 335 | 553 | 1.92e-34 | 140 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 335 | 553 | 1.92e-34 | 140 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 335 | 553 | 1.99e-34 | 139 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 294 | 512 | 2.02e-34 | 139 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 294 | 512 | 2.03e-34 | 139 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 335 | 553 | 2.08e-34 | 139 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 335 | 553 | 2.08e-34 | 139 |
| MS.gene033377.t1 | AT2G32250 | 30.455 | 220 | 152 | 1 | 226 | 445 | 335 | 553 | 2.08e-34 | 139 |
| MS.gene033377.t1 | AT1G52520 | 31.356 | 236 | 152 | 4 | 220 | 446 | 405 | 639 | 1.42e-31 | 130 |
| MS.gene033377.t1 | AT1G10240 | 26.885 | 305 | 181 | 7 | 222 | 508 | 390 | 670 | 3.81e-26 | 114 |
| MS.gene033377.t1 | AT1G10240 | 27.801 | 241 | 133 | 8 | 34 | 258 | 45 | 260 | 4.95e-15 | 79.0 |
| MS.gene033377.t1 | AT1G10240 | 26.885 | 305 | 181 | 7 | 222 | 508 | 390 | 670 | 3.81e-26 | 114 |
| MS.gene033377.t1 | AT1G10240 | 27.801 | 241 | 133 | 8 | 34 | 258 | 45 | 260 | 4.95e-15 | 79.0 |
| MS.gene033377.t1 | AT1G80010 | 28.755 | 233 | 154 | 5 | 223 | 446 | 433 | 662 | 1.74e-24 | 108 |
| MS.gene033377.t1 | AT5G28530 | 28.019 | 207 | 139 | 3 | 233 | 439 | 352 | 548 | 1.46e-17 | 87.0 |
| MS.gene033377.t1 | AT5G28530 | 28.019 | 207 | 139 | 3 | 233 | 439 | 415 | 611 | 4.30e-17 | 85.5 |
| MS.gene033377.t1 | AT5G28530 | 28.019 | 207 | 139 | 3 | 233 | 439 | 415 | 611 | 4.30e-17 | 85.5 |
| MS.gene033377.t1 | AT5G28530 | 28.436 | 211 | 137 | 4 | 233 | 439 | 352 | 552 | 5.48e-17 | 85.1 |
| MS.gene033377.t1 | AT5G28530 | 28.436 | 211 | 137 | 4 | 233 | 439 | 415 | 615 | 1.66e-16 | 83.6 |
| MS.gene033377.t1 | AT2G43280 | 31.159 | 138 | 79 | 5 | 19 | 148 | 4 | 133 | 8.13e-12 | 65.5 |
| MS.gene033377.t1 | AT3G07500 | 31.544 | 149 | 80 | 7 | 1 | 141 | 1 | 135 | 2.25e-11 | 64.3 |
Find 77 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTCGTTGATGTAAATT+TGG | 0.172325 | 8.4:+22162015 | MS.gene033377:CDS |
| CTTCCTCCGACAAGCAATTT+TGG | 0.188112 | 8.4:-22162429 | None:intergenic |
| TTTACAATTCATTTGCAAAA+AGG | 0.228560 | 8.4:+22160557 | MS.gene033377:CDS |
| TGCATCCTTCTTAATATCTT+TGG | 0.239826 | 8.4:-22162235 | None:intergenic |
| GGGACTTGGCTTTCTCTAAT+AGG | 0.243998 | 8.4:+22160950 | MS.gene033377:CDS |
| AGCAAAGGTATTAGTTGATT+TGG | 0.254141 | 8.4:+22162270 | MS.gene033377:CDS |
| GAGGTACATTAGAAGGAAAT+TGG | 0.278387 | 8.4:+22160761 | MS.gene033377:CDS |
| GGAGTTTCTCCTTTGGAATC+TGG | 0.287253 | 8.4:+22162394 | MS.gene033377:CDS |
| GGATTTCTAATAGTCAATTC+TGG | 0.312090 | 8.4:-22162460 | None:intergenic |
| ATCTTGAGCATTGTAGTTGC+TGG | 0.330448 | 8.4:-22161990 | None:intergenic |
| GGTAAATTTCAAGATGAGAT+TGG | 0.337382 | 8.4:+22161902 | MS.gene033377:CDS |
| CATACAAAGACAGCTCTCTT+TGG | 0.340587 | 8.4:-22160613 | None:intergenic |
| GGACTTGGCTTTCTCTAATA+GGG | 0.341505 | 8.4:+22160951 | MS.gene033377:CDS |
| TATATAAAATTAGAGAATCT+TGG | 0.344745 | 8.4:+22161618 | MS.gene033377:CDS |
| TTTAATTCCTCACCAACATT+AGG | 0.347135 | 8.4:-22160481 | None:intergenic |
| ATTAAATAGTGAACCTTGTA+AGG | 0.348615 | 8.4:+22160498 | MS.gene033377:CDS |
| CAGTGATGGAGTTTCTCCTT+TGG | 0.356600 | 8.4:+22162387 | MS.gene033377:CDS |
| GTTAAAAGAGGTACATTAGA+AGG | 0.366674 | 8.4:+22160754 | MS.gene033377:CDS |
| TCTTCAAAACTTTCTATACT+TGG | 0.373106 | 8.4:-22161536 | None:intergenic |
| TAGTTTGATTTGTGTCATCT+TGG | 0.378031 | 8.4:-22160684 | None:intergenic |
| CTTTCTCTAATAGGGATTGT+TGG | 0.385066 | 8.4:+22160959 | MS.gene033377:CDS |
| TGCAACGCTGCAAAATAAAA+TGG | 0.387426 | 8.4:-22162144 | None:intergenic |
| AAACAGCTTCTATTATAAAC+TGG | 0.392497 | 8.4:-22161644 | None:intergenic |
| CAATTATTGCAAACAGAAAC+AGG | 0.397066 | 8.4:+22161041 | MS.gene033377:CDS |
| GAAACTTGATAGACATAGTT+AGG | 0.397106 | 8.4:-22161968 | None:intergenic |
| AATGTTCAGTGAAGGGGACT+TGG | 0.418030 | 8.4:+22160936 | MS.gene033377:CDS |
| GTAAATTTCAAGATGAGATT+GGG | 0.418089 | 8.4:+22161903 | MS.gene033377:CDS |
| GTCCGTACTCAATCATTAAT+CGG | 0.426232 | 8.4:-22161568 | None:intergenic |
| AAGTGTTCTACTTCTCGAAC+TGG | 0.426697 | 8.4:+22160712 | MS.gene033377:CDS |
| CCACGCAATGCACAAACAAA+AGG | 0.435072 | 8.4:+22162481 | MS.gene033377:CDS |
| GCCACACTTGTTGTTAAAAG+AGG | 0.437725 | 8.4:+22160742 | MS.gene033377:CDS |
| GACAACAATGAATGGCTTCA+AGG | 0.439948 | 8.4:+22161593 | MS.gene033377:CDS |
| AATTCATTATATCTGATTTG+AGG | 0.445916 | 8.4:+22162317 | MS.gene033377:CDS |
| CGCTGCAAAATAAAATGGTC+AGG | 0.446582 | 8.4:-22162139 | None:intergenic |
| GGAATTCAAATCTGTGGAAA+AGG | 0.451124 | 8.4:+22160525 | MS.gene033377:CDS |
| TGTCATGAGTGTGGTGAATC+TGG | 0.451337 | 8.4:+22162601 | MS.gene033377:CDS |
| ATTTGTGTTGAAATTTGAAA+AGG | 0.454017 | 8.4:+22161754 | MS.gene033377:CDS |
| TTGAATTCCATCCCCTTACA+AGG | 0.484462 | 8.4:-22160511 | None:intergenic |
| TTAGCTGCTGCTCCTAATGT+TGG | 0.490364 | 8.4:+22160469 | MS.gene033377:CDS |
| AAAGAGAGGATTATGAAAGT+AGG | 0.500092 | 8.4:+22161804 | MS.gene033377:CDS |
| ATTTGATTTCTTCATTGCAA+TGG | 0.501662 | 8.4:-22162356 | None:intergenic |
| CAAAATTGTAGATTCAAAAG+TGG | 0.511466 | 8.4:+22162532 | MS.gene033377:CDS |
| GTCTTTGTATGTTGTAATGA+AGG | 0.517879 | 8.4:+22160625 | MS.gene033377:CDS |
| TGATTTGAGGCGCACTCGTA+TGG | 0.520232 | 8.4:+22162330 | MS.gene033377:CDS |
| TAGTGAACCTTGTAAGGGGA+TGG | 0.531310 | 8.4:+22160504 | MS.gene033377:CDS |
| CACGCAATGCACAAACAAAA+GGG | 0.538817 | 8.4:+22162482 | MS.gene033377:CDS |
| AAGGAAGAAGGTATACCGAC+AGG | 0.538923 | 8.4:+22160901 | MS.gene033377:CDS |
| TGTCAACCAAAATTGCTTGT+CGG | 0.544243 | 8.4:+22162423 | MS.gene033377:CDS |
| CGGTGTCATAAAAGCATGAA+TGG | 0.550442 | 8.4:+22160850 | MS.gene033377:CDS |
| ACAAAAGGGAGAAAGAAGAA+TGG | 0.552574 | 8.4:+22162496 | MS.gene033377:CDS |
| TCAAATTTAGCTATCAGTGA+TGG | 0.553213 | 8.4:+22162373 | MS.gene033377:CDS |
| CGAAGAAAGAATTTAGACGT+TGG | 0.559738 | 8.4:+22161000 | MS.gene033377:CDS |
| TTAAATAGTGAACCTTGTAA+GGG | 0.571595 | 8.4:+22160499 | MS.gene033377:CDS |
| GCACGCCAAAGATATTAAGA+AGG | 0.572798 | 8.4:+22162230 | MS.gene033377:CDS |
| ACAACAATGAATGGCTTCAA+GGG | 0.573168 | 8.4:+22161594 | MS.gene033377:CDS |
| ACGGACTGGACAACAATGAA+TGG | 0.575271 | 8.4:+22161585 | MS.gene033377:CDS |
| TGCTACAATGTTCAGTGAAG+GGG | 0.575975 | 8.4:+22160930 | MS.gene033377:CDS |
| TTGCTACAATGTTCAGTGAA+GGG | 0.579493 | 8.4:+22160929 | MS.gene033377:CDS |
| GTCTACAGGGTCAAAACTTG+AGG | 0.581238 | 8.4:+22161844 | MS.gene033377:CDS |
| GGGGATGGAATTCAAATCTG+TGG | 0.582477 | 8.4:+22160519 | MS.gene033377:CDS |
| TGTGTTGAAATTTGAAAAGG+CGG | 0.586171 | 8.4:+22161757 | MS.gene033377:CDS |
| AGCCGATTAATGATTGAGTA+CGG | 0.595364 | 8.4:+22161566 | MS.gene033377:CDS |
| GAAACACAGATTGCAAAATG+TGG | 0.599828 | 8.4:+22162037 | MS.gene033377:CDS |
| ATTGTAGCAACCTTTCCTGT+CGG | 0.600908 | 8.4:-22160916 | None:intergenic |
| TGCTGCTCCTAATGTTGGTG+AGG | 0.601546 | 8.4:+22160474 | MS.gene033377:CDS |
| GTTGCTACAATGTTCAGTGA+AGG | 0.603702 | 8.4:+22160928 | MS.gene033377:CDS |
| GCATGCTCAACAAGAAGCAA+AGG | 0.605686 | 8.4:+22162255 | MS.gene033377:CDS |
| TTCCACATTTGTTGACTGTG+TGG | 0.606600 | 8.4:-22160428 | None:intergenic |
| ATTAATGATTGAGTACGGAC+TGG | 0.607432 | 8.4:+22161571 | MS.gene033377:CDS |
| GTGCATTGGTCAATTATGGA+TGG | 0.620199 | 8.4:+22160388 | None:intergenic |
| AGAAGGTATACCGACAGGAA+AGG | 0.621900 | 8.4:+22160906 | MS.gene033377:CDS |
| AGCCACACAGTCAACAAATG+TGG | 0.622019 | 8.4:+22160426 | MS.gene033377:CDS |
| TAAATAGTGAACCTTGTAAG+GGG | 0.625905 | 8.4:+22160500 | MS.gene033377:CDS |
| CAACCAAAATTGCTTGTCGG+AGG | 0.633822 | 8.4:+22162426 | MS.gene033377:CDS |
| GAATGATCATAACCATCCCA+TGG | 0.640152 | 8.4:+22160801 | MS.gene033377:CDS |
| CTAAAAGTGTGTCTTATATG+CGG | 0.670716 | 8.4:+22160830 | MS.gene033377:CDS |
| AGAAAAGCATGTCATGAGTG+TGG | 0.709074 | 8.4:+22162592 | MS.gene033377:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAATTAGAGAATCT+TGG | + | chr8.4:22161618-22161637 | MS.gene033377:CDS | 15.0% |
| !!! | CATTATCAATCAATTTTATT+TGG | + | chr8.4:22161248-22161267 | MS.gene033377:intron | 15.0% |
| !! | ATTTGTGTTGAAATTTGAAA+AGG | + | chr8.4:22161754-22161773 | MS.gene033377:CDS | 20.0% |
| !! | TTTACAATTCATTTGCAAAA+AGG | + | chr8.4:22160557-22160576 | MS.gene033377:CDS | 20.0% |
| !!! | AATTCATTATATCTGATTTG+AGG | + | chr8.4:22162317-22162336 | MS.gene033377:CDS | 20.0% |
| !!! | ATGTCAATTATATGAGTTTT+TGG | + | chr8.4:22162060-22162079 | MS.gene033377:CDS | 20.0% |
| !!! | ATTTATTCGAGAAACATTTT+TGG | + | chr8.4:22161881-22161900 | MS.gene033377:CDS | 20.0% |
| !!! | TGTCAATTATATGAGTTTTT+GGG | + | chr8.4:22162061-22162080 | MS.gene033377:CDS | 20.0% |
| ! | AAAAAGAAGATTAGCAAAGA+TGG | + | chr8.4:22161944-22161963 | MS.gene033377:CDS | 25.0% |
| ! | AAACAGCTTCTATTATAAAC+TGG | - | chr8.4:22161647-22161666 | None:intergenic | 25.0% |
| ! | AATTCATTTGCAAAAAGGAT+GGG | + | chr8.4:22160562-22160581 | MS.gene033377:CDS | 25.0% |
| ! | ATATTACATCTCCAAATTGT+TGG | - | chr8.4:22161161-22161180 | None:intergenic | 25.0% |
| ! | ATTAAATAGTGAACCTTGTA+AGG | + | chr8.4:22160498-22160517 | MS.gene033377:CDS | 25.0% |
| ! | CAAAATTGTAGATTCAAAAG+TGG | + | chr8.4:22162532-22162551 | MS.gene033377:CDS | 25.0% |
| ! | GTAAATTTCAAGATGAGATT+GGG | + | chr8.4:22161903-22161922 | MS.gene033377:CDS | 25.0% |
| ! | TCTTCAAAACTTTCTATACT+TGG | - | chr8.4:22161539-22161558 | None:intergenic | 25.0% |
| ! | TGATTATTCAATCCAACAAA+CGG | - | chr8.4:22161230-22161249 | None:intergenic | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+GGG | + | chr8.4:22160499-22160518 | MS.gene033377:CDS | 25.0% |
| !! | ATTTGATTTCTTCATTGCAA+TGG | - | chr8.4:22162359-22162378 | None:intergenic | 25.0% |
| !! | GTCAATTATATGAGTTTTTG+GGG | + | chr8.4:22162062-22162081 | MS.gene033377:CDS | 25.0% |
| !!! | AAGTCTTGTTGAACATTTTA+AGG | + | chr8.4:22160882-22160901 | MS.gene033377:CDS | 25.0% |
| !!! | ATACTTGTTAGTCTTATATG+TGG | - | chr8.4:22161193-22161212 | None:intergenic | 25.0% |
| !!! | GTTGTTTGAAACTTTTCTTA+AGG | + | chr8.4:22161313-22161332 | MS.gene033377:intron | 25.0% |
| !!! | TCGGATGATAAACTTTTTTT+GGG | + | chr8.4:22161110-22161129 | MS.gene033377:intron | 25.0% |
| AAAAAACGCATATTGTCTAC+AGG | + | chr8.4:22161830-22161849 | MS.gene033377:CDS | 30.0% | |
| AAAAACGCATATTGTCTACA+GGG | + | chr8.4:22161831-22161850 | MS.gene033377:CDS | 30.0% | |
| AAAGAGAGGATTATGAAAGT+AGG | + | chr8.4:22161804-22161823 | MS.gene033377:CDS | 30.0% | |
| ATTATTCAATCCAACAAACG+GGG | - | chr8.4:22161228-22161247 | None:intergenic | 30.0% | |
| CAATTATTGCAAACAGAAAC+AGG | + | chr8.4:22161041-22161060 | MS.gene033377:CDS | 30.0% | |
| CAATTCATTTGCAAAAAGGA+TGG | + | chr8.4:22160561-22160580 | MS.gene033377:CDS | 30.0% | |
| CTTAGAAGTAGAAAAAAGAG+AGG | + | chr8.4:22161790-22161809 | MS.gene033377:CDS | 30.0% | |
| GAAACTTGATAGACATAGTT+AGG | - | chr8.4:22161971-22161990 | None:intergenic | 30.0% | |
| GATTATTCAATCCAACAAAC+GGG | - | chr8.4:22161229-22161248 | None:intergenic | 30.0% | |
| GGATTTCTAATAGTCAATTC+TGG | - | chr8.4:22162463-22162482 | None:intergenic | 30.0% | |
| GGTAAATTTCAAGATGAGAT+TGG | + | chr8.4:22161902-22161921 | MS.gene033377:CDS | 30.0% | |
| GTCTTTGTATGTTGTAATGA+AGG | + | chr8.4:22160625-22160644 | MS.gene033377:CDS | 30.0% | |
| GTTTCTCGTTGATGTAAATT+TGG | + | chr8.4:22162015-22162034 | MS.gene033377:CDS | 30.0% | |
| TAAATAGTGAACCTTGTAAG+GGG | + | chr8.4:22160500-22160519 | MS.gene033377:CDS | 30.0% | |
| TCAAATTTAGCTATCAGTGA+TGG | + | chr8.4:22162373-22162392 | MS.gene033377:CDS | 30.0% | |
| TGCATCCTTCTTAATATCTT+TGG | - | chr8.4:22162238-22162257 | None:intergenic | 30.0% | |
| TGTGTTGAAATTTGAAAAGG+CGG | + | chr8.4:22161757-22161776 | MS.gene033377:CDS | 30.0% | |
| TTTAATTCCTCACCAACATT+AGG | - | chr8.4:22160484-22160503 | None:intergenic | 30.0% | |
| ! | CTAAAAGTGTGTCTTATATG+CGG | + | chr8.4:22160830-22160849 | MS.gene033377:CDS | 30.0% |
| ! | GCATATAAGACACACTTTTA+GGG | - | chr8.4:22160831-22160850 | None:intergenic | 30.0% |
| ! | GTTAAAAGAGGTACATTAGA+AGG | + | chr8.4:22160754-22160773 | MS.gene033377:CDS | 30.0% |
| ! | TGAAACTTTTCTTAAGGCAA+TGG | + | chr8.4:22161319-22161338 | MS.gene033377:intron | 30.0% |
| !! | AGATTAGCTTACCAACAATT+TGG | + | chr8.4:22161147-22161166 | MS.gene033377:intron | 30.0% |
| !! | AGCAAAGGTATTAGTTGATT+TGG | + | chr8.4:22162270-22162289 | MS.gene033377:CDS | 30.0% |
| !! | GTTGAACATTTTAAGGAAGA+AGG | + | chr8.4:22160889-22160908 | MS.gene033377:CDS | 30.0% |
| !! | TAGTTTGATTTGTGTCATCT+TGG | - | chr8.4:22160687-22160706 | None:intergenic | 30.0% |
| !!! | AATAGAAGCTGTTTTTTTGC+TGG | + | chr8.4:22161653-22161672 | MS.gene033377:CDS | 30.0% |
| !!! | AGCAATTTTGGTTGACATTT+TGG | - | chr8.4:22162420-22162439 | None:intergenic | 30.0% |
| !!! | ATAGAAGCTGTTTTTTTGCT+GGG | + | chr8.4:22161654-22161673 | MS.gene033377:CDS | 30.0% |
| !!! | CTCGGATGATAAACTTTTTT+TGG | + | chr8.4:22161109-22161128 | MS.gene033377:intron | 30.0% |
| !!! | CTCGTAATTTTTCAAGCAAA+AGG | + | chr8.4:22162103-22162122 | MS.gene033377:CDS | 30.0% |
| !!! | CTCTTTTTTCTACTTCTAAG+CGG | - | chr8.4:22161790-22161809 | None:intergenic | 30.0% |
| !!! | TAGAAAGTTTTGAAGAAGAC+TGG | + | chr8.4:22161543-22161562 | MS.gene033377:CDS | 30.0% |
| ACAAAAGGGAGAAAGAAGAA+TGG | + | chr8.4:22162496-22162515 | MS.gene033377:CDS | 35.0% | |
| ACAACAATGAATGGCTTCAA+GGG | + | chr8.4:22161594-22161613 | MS.gene033377:CDS | 35.0% | |
| AGCCGATTAATGATTGAGTA+CGG | + | chr8.4:22161566-22161585 | MS.gene033377:CDS | 35.0% | |
| AGTCAGAACGCTCATTTATA+TGG | + | chr8.4:22161291-22161310 | MS.gene033377:intron | 35.0% | |
| ATTAATGATTGAGTACGGAC+TGG | + | chr8.4:22161571-22161590 | MS.gene033377:CDS | 35.0% | |
| CGAAGAAAGAATTTAGACGT+TGG | + | chr8.4:22161000-22161019 | MS.gene033377:CDS | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | + | chr8.4:22160959-22160978 | MS.gene033377:CDS | 35.0% | |
| GAAACACAGATTGCAAAATG+TGG | + | chr8.4:22162037-22162056 | MS.gene033377:CDS | 35.0% | |
| GAGGTACATTAGAAGGAAAT+TGG | + | chr8.4:22160761-22160780 | MS.gene033377:CDS | 35.0% | |
| GGAATTCAAATCTGTGGAAA+AGG | + | chr8.4:22160525-22160544 | MS.gene033377:CDS | 35.0% | |
| GTCCGTACTCAATCATTAAT+CGG | - | chr8.4:22161571-22161590 | None:intergenic | 35.0% | |
| TCCAATGTGATGAAGATTCT+CGG | + | chr8.4:22161091-22161110 | MS.gene033377:intron | 35.0% | |
| TGCAACGCTGCAAAATAAAA+TGG | - | chr8.4:22162147-22162166 | None:intergenic | 35.0% | |
| TGGTCAGTTATGACAGATTT+GGG | - | chr8.4:22161356-22161375 | None:intergenic | 35.0% | |
| TGTCAACCAAAATTGCTTGT+CGG | + | chr8.4:22162423-22162442 | MS.gene033377:CDS | 35.0% | |
| TTGCTACAATGTTCAGTGAA+GGG | + | chr8.4:22160929-22160948 | MS.gene033377:CDS | 35.0% | |
| TTTCAATTCTCGCTTGAAAG+TGG | - | chr8.4:22161498-22161517 | None:intergenic | 35.0% | |
| ! | ACCTCTTTTAACAACAAGTG+TGG | - | chr8.4:22160746-22160765 | None:intergenic | 35.0% |
| ! | ACTTTTCTTAAGGCAATGGA+TGG | + | chr8.4:22161323-22161342 | MS.gene033377:intron | 35.0% |
| ! | CGCATATAAGACACACTTTT+AGG | - | chr8.4:22160832-22160851 | None:intergenic | 35.0% |
| ! | GATACGACGAGTAATTTTGA+AGG | + | chr8.4:22162199-22162218 | MS.gene033377:CDS | 35.0% |
| !! | TTTGCAAAAAGGATGGGTTT+TGG | + | chr8.4:22160568-22160587 | MS.gene033377:CDS | 35.0% |
| AAGTGTTCTACTTCTCGAAC+TGG | + | chr8.4:22160712-22160731 | MS.gene033377:CDS | 40.0% | |
| ATTGTAGCAACCTTTCCTGT+CGG | - | chr8.4:22160919-22160938 | None:intergenic | 40.0% | |
| CAAATCTGTCATAACTGACC+AGG | + | chr8.4:22161355-22161374 | MS.gene033377:intron | 40.0% | |
| CACGCAATGCACAAACAAAA+GGG | + | chr8.4:22162482-22162501 | MS.gene033377:CDS | 40.0% | |
| CATACAAAGACAGCTCTCTT+TGG | - | chr8.4:22160616-22160635 | None:intergenic | 40.0% | |
| CGCTGCAAAATAAAATGGTC+AGG | - | chr8.4:22162142-22162161 | None:intergenic | 40.0% | |
| CTGGTCAGTTATGACAGATT+TGG | - | chr8.4:22161357-22161376 | None:intergenic | 40.0% | |
| GAATGATCATAACCATCCCA+TGG | + | chr8.4:22160801-22160820 | MS.gene033377:CDS | 40.0% | |
| GACAACAATGAATGGCTTCA+AGG | + | chr8.4:22161593-22161612 | MS.gene033377:CDS | 40.0% | |
| GCACGCCAAAGATATTAAGA+AGG | + | chr8.4:22162230-22162249 | MS.gene033377:CDS | 40.0% | |
| GTTGCTACAATGTTCAGTGA+AGG | + | chr8.4:22160928-22160947 | MS.gene033377:CDS | 40.0% | |
| TCCGAGAATCTTCATCACAT+TGG | - | chr8.4:22161095-22161114 | None:intergenic | 40.0% | |
| TCCTAATATGCCATAAGCAG+AGG | - | chr8.4:22161433-22161452 | None:intergenic | 40.0% | |
| TGCTACAATGTTCAGTGAAG+GGG | + | chr8.4:22160930-22160949 | MS.gene033377:CDS | 40.0% | |
| TGTCATAACTGACCAGGATT+TGG | + | chr8.4:22161361-22161380 | MS.gene033377:intron | 40.0% | |
| TTGAATTCCATCCCCTTACA+AGG | - | chr8.4:22160514-22160533 | None:intergenic | 40.0% | |
| ! | AGAAAAGCATGTCATGAGTG+TGG | + | chr8.4:22162592-22162611 | MS.gene033377:CDS | 40.0% |
| ! | ATCTTGAGCATTGTAGTTGC+TGG | - | chr8.4:22161993-22162012 | None:intergenic | 40.0% |
| ! | GGACTTGGCTTTCTCTAATA+GGG | + | chr8.4:22160951-22160970 | MS.gene033377:CDS | 40.0% |
| ! | TTCCACATTTGTTGACTGTG+TGG | - | chr8.4:22160431-22160450 | None:intergenic | 40.0% |
| ! | TTGGCTATGAAAGCTGCTTT+AGG | + | chr8.4:22161380-22161399 | MS.gene033377:intron | 40.0% |
| !! | ACATTTTGGCCAGATTCCAA+AGG | - | chr8.4:22162406-22162425 | None:intergenic | 40.0% |
| !! | AGTTTTTGGGGATATTGTGC+AGG | + | chr8.4:22162074-22162093 | MS.gene033377:CDS | 40.0% |
| !! | CGGTGTCATAAAAGCATGAA+TGG | + | chr8.4:22160850-22160869 | MS.gene033377:CDS | 40.0% |
| !! | GCCACACTTGTTGTTAAAAG+AGG | + | chr8.4:22160742-22160761 | MS.gene033377:CDS | 40.0% |
| !!! | ACACTTTTAGGGCTAACCAT+GGG | - | chr8.4:22160820-22160839 | None:intergenic | 40.0% |
| AATCCAACAAACGGGGCAAA+TGG | - | chr8.4:22161221-22161240 | None:intergenic | 45.0% | |
| AATGTTCAGTGAAGGGGACT+TGG | + | chr8.4:22160936-22160955 | MS.gene033377:CDS | 45.0% | |
| AGCCACACAGTCAACAAATG+TGG | + | chr8.4:22160426-22160445 | MS.gene033377:CDS | 45.0% | |
| CAACCAAAATTGCTTGTCGG+AGG | + | chr8.4:22162426-22162445 | MS.gene033377:CDS | 45.0% | |
| CAGCTTTCATAGCCAAATCC+TGG | - | chr8.4:22161376-22161395 | None:intergenic | 45.0% | |
| CCACGCAATGCACAAACAAA+AGG | + | chr8.4:22162481-22162500 | MS.gene033377:CDS | 45.0% | |
| GCATGCTCAACAAGAAGCAA+AGG | + | chr8.4:22162255-22162274 | MS.gene033377:CDS | 45.0% | |
| GCCTCTGCTTATGGCATATT+AGG | + | chr8.4:22161429-22161448 | MS.gene033377:intron | 45.0% | |
| GGGGATGGAATTCAAATCTG+TGG | + | chr8.4:22160519-22160538 | MS.gene033377:CDS | 45.0% | |
| GTCTACAGGGTCAAAACTTG+AGG | + | chr8.4:22161844-22161863 | MS.gene033377:CDS | 45.0% | |
| TAGTGAACCTTGTAAGGGGA+TGG | + | chr8.4:22160504-22160523 | MS.gene033377:CDS | 45.0% | |
| TGTCATGAGTGTGGTGAATC+TGG | + | chr8.4:22162601-22162620 | MS.gene033377:CDS | 45.0% | |
| TTAGCTGCTGCTCCTAATGT+TGG | + | chr8.4:22160469-22160488 | MS.gene033377:CDS | 45.0% | |
| ! | AAGGAAGAAGGTATACCGAC+AGG | + | chr8.4:22160901-22160920 | MS.gene033377:CDS | 45.0% |
| ! | AGAAGGTATACCGACAGGAA+AGG | + | chr8.4:22160906-22160925 | MS.gene033377:CDS | 45.0% |
| ! | CAGTGATGGAGTTTCTCCTT+TGG | + | chr8.4:22162387-22162406 | MS.gene033377:CDS | 45.0% |
| ! | CTTCCTCCGACAAGCAATTT+TGG | - | chr8.4:22162432-22162451 | None:intergenic | 45.0% |
| ! | GGGACTTGGCTTTCTCTAAT+AGG | + | chr8.4:22160950-22160969 | MS.gene033377:CDS | 45.0% |
| !! | ACGGACTGGACAACAATGAA+TGG | + | chr8.4:22161585-22161604 | MS.gene033377:CDS | 45.0% |
| !! | CCTTTTGTTTGTGCATTGCG+TGG | - | chr8.4:22162484-22162503 | None:intergenic | 45.0% |
| !! | GGAGTTTCTCCTTTGGAATC+TGG | + | chr8.4:22162394-22162413 | MS.gene033377:CDS | 45.0% |
| !!! | CACACTTTTAGGGCTAACCA+TGG | - | chr8.4:22160821-22160840 | None:intergenic | 45.0% |
| !!! | TTTTAGGGCTAACCATGGGA+TGG | - | chr8.4:22160816-22160835 | None:intergenic | 45.0% |
| CTAGACATCGCCTCTGCTTA+TGG | + | chr8.4:22161420-22161439 | MS.gene033377:intron | 50.0% | |
| TGCTGCTCCTAATGTTGGTG+AGG | + | chr8.4:22160474-22160493 | MS.gene033377:CDS | 50.0% | |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | + | chr8.4:22161215-22161234 | MS.gene033377:intron | 50.0% |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | - | chr8.4:22161416-22161435 | None:intergenic | 50.0% |
| ! | TGATTTGAGGCGCACTCGTA+TGG | + | chr8.4:22162330-22162349 | MS.gene033377:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22160403 | 22162666 | 22160403 | ID=MS.gene033377 |
| chr8.4 | mRNA | 22160403 | 22162666 | 22160403 | ID=MS.gene033377.t1;Parent=MS.gene033377 |
| chr8.4 | exon | 22160403 | 22161062 | 22160403 | ID=MS.gene033377.t1.exon1;Parent=MS.gene033377.t1 |
| chr8.4 | CDS | 22160403 | 22161062 | 22160403 | ID=cds.MS.gene033377.t1;Parent=MS.gene033377.t1 |
| chr8.4 | exon | 22161506 | 22162666 | 22161506 | ID=MS.gene033377.t1.exon2;Parent=MS.gene033377.t1 |
| chr8.4 | CDS | 22161506 | 22162666 | 22161506 | ID=cds.MS.gene033377.t1;Parent=MS.gene033377.t1 |
| Gene Sequence |
| Protein sequence |
