AlfalfaGEDB | MS.gene033385

M. sativa cultivar XinJiangDaYe / MS.gene033385

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF03101.18 PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033385.t1	XP_019429336.1	58.2	699	172	2	47	626	1	698	7.10E-221	776.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033385.t1	Q9SZL8	32.1	675	314	10	3	540	22	689	3.5e-91	337.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033385.t1	A0A396JW00	60.0	675	149	2	5	560	13	685	4.1e-218	767.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene033385.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033385.t1	MTR_6g053640	76.378	127	30	0	444	570	9	135	1.18e-60	199
MS.gene033385.t1	MTR_3g005220	74.227	97	21	2	1	96	32	125	1.33e-41	148
MS.gene033385.t1	MTR_4g035820	26.841	421	254	11	16	405	29	426	1.91e-33	136
MS.gene033385.t1	MTR_6g024175	62.500	88	33	0	453	540	97	184	9.63e-30	116
MS.gene033385.t1	MTR_6g025550	46.377	138	32	3	232	361	23	126	1.18e-29	114
MS.gene033385.t1	MTR_6g060130	75.000	64	15	1	2	64	58	121	4.68e-24	98.2
MS.gene033385.t1	MTR_1g008290	40.476	126	72	2	116	241	22	144	8.67e-24	98.2
MS.gene033385.t1	MTR_2g098880	35.762	151	85	3	5	148	22	167	6.92e-23	99.0
MS.gene033385.t1	MTR_2g098880	35.762	151	85	3	5	148	34	179	7.46e-23	99.0
MS.gene033385.t1	MTR_1g083640	29.200	250	153	5	23	252	33	278	8.24e-22	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033385.t1	AT4G38180	40.468	299	171	3	245	540	395	689	3.27e-69	240
MS.gene033385.t1	AT4G38180	36.090	266	152	6	2	252	21	283	1.16e-40	159
MS.gene033385.t1	AT4G38170	32.743	339	219	4	243	579	158	489	6.61e-61	213
MS.gene033385.t1	AT2G27110	34.106	302	193	2	243	544	195	490	1.38e-55	201
MS.gene033385.t1	AT2G27110	34.106	302	193	2	243	544	340	635	4.58e-55	201
MS.gene033385.t1	AT2G27110	29.907	214	116	7	42	252	48	230	6.36e-14	75.9
MS.gene033385.t1	AT2G27110	34.106	302	193	2	243	544	340	635	4.58e-55	201
MS.gene033385.t1	AT2G27110	29.907	214	116	7	42	252	48	230	6.36e-14	75.9
MS.gene033385.t1	AT5G18960	36.593	317	175	5	237	544	485	784	1.54e-53	196
MS.gene033385.t1	AT5G18960	26.214	206	108	5	42	244	210	374	1.88e-16	84.0

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Find 99 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGACGTACATAAGA+AGG	0.521777	8.4:-22238848	None:intergenic
AAAGTGCGTGGACGACCTTT+AGG	0.302776	8.4:-22239679	None:intergenic
AAATCCACCACCTTTGGCTT+CGG	0.415432	8.4:-22240137	None:intergenic
AAGATGCTGTGAACTTCTTG+GGG	0.593260	8.4:-22238015	None:intergenic
AAGTGCGTGGACGACCTTTA+GGG	0.355019	8.4:-22239678	None:intergenic
AATAATTAATAACATCTTGT+TGG	0.331163	8.4:-22238169	None:intergenic
AATCACAAAACTTGATCAAT+TGG	0.412422	8.4:+22239552	MS.gene033385:CDS
AATTGCAATTGAAGACCTCG+AGG	0.709068	8.4:+22239402	MS.gene033385:CDS
AATTGTCAGTTGAAGAATCC+TGG	0.396913	8.4:+22238257	MS.gene033385:CDS
AATTTCATGAATCTTGTATG+TGG	0.536832	8.4:-22239179	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCACACCTAAAAGACAT+TGG	-	chr8.4:22239897-22239916	None:intergenic	30.0%
ATATTGCAATTCAAGCTTTG+CGG	+	chr8.4:22239524-22239543	MS.gene033385:CDS	30.0%
ATCAGTTGTAGTTATTGCAA+CGG	+	chr8.4:22239742-22239761	MS.gene033385:CDS	30.0%
ATTCATACTTTCACTCCTTT+GGG	-	chr8.4:22238894-22238913	None:intergenic	30.0%
CAAGAAAAATGAAGATGGAT+GGG	+	chr8.4:22237950-22237969	MS.gene033385:CDS	30.0%
CACTATGTTCATGATAGATT+TGG	-	chr8.4:22238682-22238701	None:intergenic	30.0%
CTAGTGTTAATTCCTAGTAT+TGG	+	chr8.4:22240075-22240094	MS.gene033385:intron	30.0%
CTTTCTCTGCGATAAATATT+TGG	-	chr8.4:22239138-22239157	None:intergenic	30.0%
GGGAAAATAGTACATGATTA+TGG	-	chr8.4:22237998-22238017	None:intergenic	30.0%
GTAACTAAATAAACTTGGCA+TGG	-	chr8.4:22239871-22239890	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	22237576	22240165	22237576	ID=MS.gene033385
chr8.4	mRNA	22237576	22240165	22237576	ID=MS.gene033385.t1;Parent=MS.gene033385
chr8.4	exon	22237576	22238311	22237576	ID=MS.gene033385.t1.exon1;Parent=MS.gene033385.t1
chr8.4	CDS	22237576	22238311	22237576	ID=cds.MS.gene033385.t1;Parent=MS.gene033385.t1
chr8.4	exon	22238669	22239809	22238669	ID=MS.gene033385.t1.exon2;Parent=MS.gene033385.t1
chr8.4	CDS	22238669	22239809	22238669	ID=cds.MS.gene033385.t1;Parent=MS.gene033385.t1
chr8.4	exon	22240108	22240165	22240108	ID=MS.gene033385.t1.exon3;Parent=MS.gene033385.t1
chr8.4	CDS	22240108	22240165	22240108	ID=cds.MS.gene033385.t1;Parent=MS.gene033385.t1

Gene Sequence

>MS.gene033385

ATGACTGATCAAGAAATGACAGATATGCATGAACATACCACCATGAATGGCTCAGATGATGTACTTGCAAATGCTATTGATGCAGACTCTCTCAATGATAGACCGCCATCAGAGCTCCCCTTAGAGCCCTTTGAAGGAATGGAGTTTGCATCAATTGAAGATGTAAAGGATTACTATGTAAGGTACACCAAGAAAAAAGGTTTTAGTTTTCGCATGGGTCGTGTTACTAAATCAAGAACGAATGGTATTGTGATTGGTCAAGAGATTCTTTGTTCAAAGGAGGGTTTTAGATCCAAAAAAAATTTGAAAAAAGAAAATGGTAGTCTTAAAGTACACGATCAAACAAGGGTAGGATGCAAGTCAATGTTGTACATCAAGAAAAATGAAGATGGATGGGTTGTTTCTAGATTTGTAAGAGACCATAATCATGTACTATTTTCCCCAAGAAGTTCACAGCATCTTCGAGTACATAGAAAGAAAACCCCAGTGCAAAAAAAACTTATTGATGTGCTTCATGATTCTGGTATAGGCCCTAGTAAAATAGCATCAGTGTTATGTACCGAGAGTGGTGGTGTTGATAATGTTGGATTTAGCCAACAAGATGTTATTAATTATTTAAGTGTAAAGAGACAAAAACAATTAGAAAATGGAGATGCTCACTTGATGTTATCGTACTTTAAGAATTGTCAGTTGAAGAATCCTGGGTTTTTTTATGCATTTCAAATGGACGCAGAAGGTAAATTAGCAAATGGCTTTTGGGTTGATTCAAGGTCTAGAATGGCTTACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACCTACTTAACAAATAGATACCTAATGCCCTTTGTTCCATTCACTAGAGTTAATCATCACCAACAGTCTATACTTTTTGGTTGTGCTCTGTTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGCTACGTACTTCGTTAGAAGCAATGGATGGAGTTAGTCCTAAAACTATTATCACTGATCAAGACACTTCTATTTCTAATGCAGTTGCAAAGGTTTTTCCAGAGGTGAATCATCATTATTGTATGTGGCATATTGAGAAGAAAGTTCCAGAGTACTTGAACCAAATCTATCATGAACATAGTGAGTTTAAAAATCAATTTCACAAGTGCATTCACCAAACTATCACTACTGATGACTTTGATTCTGATTGGGGAGCAATGATAGATAAGTACGAGTTGCAAGATAACAAATGGCTAAAGAAGATCTACTCCATTCGAGAAAAATGGATTCCTTCTTATGTACGTCAGAGTTTTTGTGCTGGAATGTCCACCACCCAAAGGAGTGAAAGTATGAATAAATTTTTTAAGGGCTTTTTGAATTCAAGTACTCCATTGAGCAAGTTTGTGATACAGTATGAGAAGGCTCTTGATGCACGTTATAACAAGGAAAGAGAGAAGAATGTCAAGACAAGGAATTCAAAACCACTTCTGCGTACTTTATATCCCATGGAAGAAGAGGCTTCAAAAATTTATACAAGAAAAGTGTTTAGGATTTTTCAGGATGAGTTGGTTGGGTCCCAAATATTTATCGCAGAGAAAGTTAAGTTTTTTGATGAAGTTTCCACATACAAGATTCATGAAATTTACAAAGAAAAACCTAACTATCATGTGACTTTTCAGAACATTTCAAAAGAAGCAAAATGTAGTTGTCGCATGTTTGAGTTTGTGGGAATTCTCTGTAGACATGTATTAAATGTATTCATAAAGGAAAATGTCTATTCTCTCCCTTCTCAATATGTTCTAAGCCGATGGACCATAAATGCTAAGAAAGAAAAAAATAAAGGAATTGCAATTGAAGACCTCGAGGAAGGCAGAAACAAAGCTTCAAGTACTTCATTATTTAATAGTATTATGGTTGAGTCTCTTGAACTATCTGAAAGAGGTTCACGATCAGAAAAGCATCATGATATTGCAATTCAAGCTTTGCGGAAGGCAATCACAAAACTTGATCAATTGGATCTTGAACAACCAAATGAAGAGTTTGATAAATCGACATTTGAAGTTATGCCTAAAGTCTCTGATGACCAGACCATAAACTTGTGTGATCCTCCACGTGCGGTCCCTAAAGGTCGTCCACGCACTTTACGAATGAAAGGCAGTTTGGAATTGCACAAGAAAAATTCAATCAGTTGTAGTTATTGCAACGGAAAAGGCCACAACAAACGTAGATGTCCAAGTTTAAAACATGGAAGGTATCTTAAAATTACATGTTACAAGTAATTGTGCAGTTAATTTGAATTTTTCATTTTACCATGCCAAGTTTATTTAGTTACAAACCAATGTCTTTTAGGTGTGATATCATCAATGGTCAACTTTCAAATTCCAATGTTAAAGCTTCTAGTTTTGTTGATTAAGAGGTACTGTTGTTATTGTTTTGCTGGCAATGCTATACAATTATTATGCTATACAATTATTATTTTGATCCTAAATATATTATTGTTACAAGATCATGTTCTTCTAGTGTTAATTCCTAGTATTGGTTTGTTGCAGACCTGTTTTGCCAATAAGGGATAATTTTGCCGAAGCCAAAGGTGGTGGATTTCTCTGA

Protein sequence

>MS.gene033385.t1

MTDQEMTDMHEHTTMNGSDDVLANAIDADSLNDRPPSELPLEPFEGMEFASIEDVKDYYVRYTKKKGFSFRMGRVTKSRTNGIVIGQEILCSKEGFRSKKNLKKENGSLKVHDQTRVGCKSMLYIKKNEDGWVVSRFVRDHNHVLFSPRSSQHLRVHRKKTPVQKKLIDVLHDSGIGPSKIASVLCTESGGVDNVGFSQQDVINYLSVKRQKQLENGDAHLMLSYFKNCQLKNPGFFYAFQMDAEEYLNQIYHEHSEFKNQFHKCIHQTITTDDFDSDWGAMIDKYELQDNKWLKKIYSIREKWIPSYVRQSFCAGMSTTQRSESMNKFFKGFLNSSTPLSKFVIQYEKALDARYNKEREKNVKTRNSKPLLRTLYPMEEEASKIYTRKVFRIFQDELVGSQIFIAEKVKFFDEVSTYKIHEIYKEKPNYHVTFQNISKEAKCSCRMFEFVGILCRHVLNVFIKENVYSLPSQYVLSRWTINAKKEKNKGIAIEDLEEGRNKASSTSLFNSIMVESLELSERGSRSEKHHDIAIQALRKAITKLDQLDLEQPNEEFDKSTFEVMPKVSDDQTINLCDPPRAVPKGRPRTLRMKGSLELHKKNSISCSYCNGKGHNKRRCPSLKHGRPVLPIRDNFAEAKGGGFL