Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033511.t1 | XP_024625682.1 | 65.2 | 563 | 20 | 1 | 1 | 387 | 21 | 583 | 9.30E-192 | 679.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033511.t1 | Q9M219 | 49.5 | 303 | 153 | 0 | 82 | 384 | 250 | 552 | 8.5e-85 | 315.5 |
| MS.gene033511.t1 | Q9M219 | 37.0 | 73 | 42 | 1 | 5 | 77 | 5 | 73 | 1.3e-05 | 52.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033511.t1 | A0A396H3S7 | 65.2 | 563 | 20 | 1 | 1 | 387 | 21 | 583 | 6.7e-192 | 679.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene033511.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033511.t1 | MTR_7g080620 | 94.498 | 309 | 17 | 0 | 77 | 385 | 273 | 581 | 0.0 | 610 |
| MS.gene033511.t1 | MTR_7g080620 | 94.937 | 79 | 4 | 0 | 1 | 79 | 21 | 99 | 4.70e-43 | 160 |
| MS.gene033511.t1 | MTR_8g005155 | 58.033 | 305 | 127 | 1 | 76 | 380 | 253 | 556 | 3.20e-126 | 375 |
| MS.gene033511.t1 | MTR_8g005155 | 48.529 | 68 | 34 | 1 | 11 | 77 | 9 | 76 | 3.35e-12 | 68.2 |
| MS.gene033511.t1 | MTR_7g093000 | 22.951 | 305 | 222 | 7 | 76 | 378 | 268 | 561 | 9.77e-21 | 94.4 |
| MS.gene033511.t1 | MTR_5g084810 | 24.390 | 246 | 173 | 4 | 133 | 376 | 341 | 575 | 3.42e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033511.t1 | AT3G60400 | 49.505 | 303 | 153 | 0 | 82 | 384 | 250 | 552 | 1.82e-104 | 319 |
| MS.gene033511.t1 | AT4G19650 | 25.279 | 269 | 187 | 4 | 110 | 376 | 328 | 584 | 2.17e-22 | 99.4 |
| MS.gene033511.t1 | AT4G19650 | 25.279 | 269 | 187 | 4 | 110 | 376 | 311 | 567 | 3.11e-22 | 99.0 |
| MS.gene033511.t1 | AT5G06811 | 27.679 | 336 | 210 | 10 | 47 | 375 | 261 | 570 | 1.73e-21 | 96.7 |
| MS.gene033511.t1 | AT5G06810 | 26.838 | 272 | 179 | 7 | 109 | 375 | 318 | 574 | 2.09e-18 | 87.4 |
| MS.gene033511.t1 | AT5G45113 | 25.540 | 278 | 186 | 6 | 104 | 376 | 145 | 406 | 7.63e-17 | 82.0 |
Find 82 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTATAATTTCATAATTT+TGG | 0.097711 | 7.3:-26678138 | None:intergenic |
| TGCATTGACTATGAATCTTT+TGG | 0.189736 | 7.3:+26678000 | MS.gene033511:CDS |
| GAGGATGTTATTGAAAATTT+TGG | 0.244503 | 7.3:+26677728 | MS.gene033511:CDS |
| CCAAAGTTGTTCCCATTTCC+TGG | 0.259323 | 7.3:-26678180 | None:intergenic |
| TCTGTGTCTGATGGGGATTT+TGG | 0.281143 | 7.3:-26676823 | None:intergenic |
| TTTGGAGAGGTTTGGGAAGT+TGG | 0.299547 | 7.3:-26676805 | None:intergenic |
| GTAGAGTATTTCTGTGGATT+TGG | 0.306808 | 7.3:+26677578 | MS.gene033511:CDS |
| TGAAGTGTTAAAGCTTGATT+TGG | 0.312206 | 7.3:+26677643 | MS.gene033511:CDS |
| AATTGCTCGAACCAATGTTT+TGG | 0.329948 | 7.3:-26678388 | None:intergenic |
| TGGCATGAGCTCTAAAGATT+TGG | 0.330860 | 7.3:+26677706 | MS.gene033511:CDS |
| CGGCACAAGCAGTGAGTTAC+AGG | 0.339180 | 7.3:+26678033 | MS.gene033511:CDS |
| ATGGTTCTGTGATAAGTTAA+AGG | 0.357332 | 7.3:+26677817 | MS.gene033511:CDS |
| GAGCTATGGGTTTGCAAGAA+TGG | 0.361647 | 7.3:+26677798 | MS.gene033511:CDS |
| ATTCAATTCTTGAGCGTAGA+AGG | 0.364335 | 7.3:-26678069 | None:intergenic |
| AGTTAAAGGGTGGGCATTAT+CGG | 0.373850 | 7.3:+26677831 | MS.gene033511:CDS |
| AAGTGATAATGCAACATTGC+TGG | 0.384343 | 7.3:-26678220 | None:intergenic |
| GGGAACAACTTTGGACTGTC+TGG | 0.390764 | 7.3:+26678189 | MS.gene033511:CDS |
| TTCTTACATAGATTAGGCTT+TGG | 0.390843 | 7.3:+26677971 | MS.gene033511:CDS |
| TTAAATTTCTTACATAGATT+AGG | 0.396832 | 7.3:+26677965 | MS.gene033511:CDS |
| CTGTGGATTTGGTGGAAAGA+AGG | 0.405320 | 7.3:+26677589 | MS.gene033511:CDS |
| ATCTGTACCTAGGTATAATT+CGG | 0.410370 | 7.3:-26678249 | None:intergenic |
| CCCATAGCTCTCATCACATT+TGG | 0.415076 | 7.3:-26677785 | None:intergenic |
| TTTGGTGTTGTGGAGGTAAT+CGG | 0.422094 | 7.3:-26676880 | None:intergenic |
| ATCGGTGATCATACTTTGAA+TGG | 0.423686 | 7.3:-26678317 | None:intergenic |
| CCAGGAAATGGGAACAACTT+TGG | 0.424489 | 7.3:+26678180 | MS.gene033511:CDS |
| AAATCAAGCTTTAACACTTC+AGG | 0.444612 | 7.3:-26677641 | None:intergenic |
| CATGAGCTCTAAAGATTTGG+AGG | 0.452449 | 7.3:+26677709 | MS.gene033511:CDS |
| ATTATTACATTGGCAATTGA+CGG | 0.455169 | 7.3:-26678417 | None:intergenic |
| AAGATTATCAAGATGGTTTG+AGG | 0.456096 | 7.3:+26677900 | MS.gene033511:CDS |
| TGGTGGAAAGAAGGAGGAAG+TGG | 0.471562 | 7.3:+26677598 | MS.gene033511:CDS |
| GAGTATTTCTGTGGATTTGG+TGG | 0.478331 | 7.3:+26677581 | MS.gene033511:CDS |
| CCATACGTGGCTTACTGAAA+GGG | 0.479203 | 7.3:+26678273 | MS.gene033511:CDS |
| CGGGATAAAGATTATCAAGA+TGG | 0.492595 | 7.3:+26677893 | MS.gene033511:CDS |
| ATAGGTGAAGGGTATGGATT+TGG | 0.493429 | 7.3:-26676898 | None:intergenic |
| CCCTTTCAGTAAGCCACGTA+TGG | 0.493524 | 7.3:-26678273 | None:intergenic |
| AATGGATGGAAGGGTAATGT+AGG | 0.497129 | 7.3:+26677491 | MS.gene033511:intron |
| TGGTTCTGTGATAAGTTAAA+GGG | 0.503197 | 7.3:+26677818 | MS.gene033511:CDS |
| CAAGTGATCGCAATGAAGAC+CGG | 0.503592 | 7.3:+26677873 | MS.gene033511:CDS |
| CATCTTGATAATCTTTATCC+CGG | 0.516234 | 7.3:-26677892 | None:intergenic |
| AGCAATGTTGCATTATCACT+TGG | 0.516606 | 7.3:+26678222 | MS.gene033511:CDS |
| TCCATACGTGGCTTACTGAA+AGG | 0.518843 | 7.3:+26678272 | MS.gene033511:CDS |
| AAATACCACAATTATTACAT+TGG | 0.521406 | 7.3:-26678427 | None:intergenic |
| CCAAATGTGATGAGAGCTAT+GGG | 0.525151 | 7.3:+26677785 | MS.gene033511:CDS |
| ACCAAATGTGATGAGAGCTA+TGG | 0.530073 | 7.3:+26677784 | MS.gene033511:CDS |
| ACATGGTTTCTGTGTCTGAT+GGG | 0.535641 | 7.3:-26676831 | None:intergenic |
| TGTGTTGGGAACAATTAGAA+TGG | 0.537589 | 7.3:+26677754 | MS.gene033511:CDS |
| CCTCACAAATCTCATTTCAA+AGG | 0.541683 | 7.3:+26676953 | MS.gene033511:CDS |
| AGGGTATGGATTTGGTGTTG+TGG | 0.544585 | 7.3:-26676890 | None:intergenic |
| GTTGCCAATGTGTTCTGCAT+AGG | 0.550077 | 7.3:-26676916 | None:intergenic |
| ATCCAGCTGCTCCAAAACAT+TGG | 0.550499 | 7.3:+26678377 | MS.gene033511:CDS |
| TTGGAGCTGTTGAAACACTT+TGG | 0.555886 | 7.3:+26677686 | MS.gene033511:CDS |
| GACATGGTTTCTGTGTCTGA+TGG | 0.564066 | 7.3:-26676832 | None:intergenic |
| ATTCTCAAAGCTCTGCATGA+TGG | 0.566277 | 7.3:+26678090 | MS.gene033511:CDS |
| GGGTAATGTAGGAGAACTCA+TGG | 0.567143 | 7.3:+26677502 | MS.gene033511:intron |
| AAAGCTTGATTTGGAGAAGA+CGG | 0.572369 | 7.3:+26677652 | MS.gene033511:CDS |
| CTTTGAAATGAGATTTGTGA+GGG | 0.572972 | 7.3:-26676952 | None:intergenic |
| CATAAAGTAGAGTATTTCTG+TGG | 0.577594 | 7.3:+26677572 | MS.gene033511:CDS |
| TTCTGTGATAAGTTAAAGGG+TGG | 0.581828 | 7.3:+26677821 | MS.gene033511:CDS |
| TGGATTTGGTGGAAAGAAGG+AGG | 0.582914 | 7.3:+26677592 | MS.gene033511:CDS |
| ATTTGTTGATCACAAAGAAG+AGG | 0.582958 | 7.3:+26677541 | MS.gene033511:CDS |
| TTTGAGCTTCGTGAATGACA+TGG | 0.585863 | 7.3:-26676848 | None:intergenic |
| GAAGACGGTGATTAATGTGT+TGG | 0.586071 | 7.3:+26677667 | MS.gene033511:CDS |
| AAGTGATCGCAATGAAGACC+GGG | 0.587085 | 7.3:+26677874 | MS.gene033511:CDS |
| GGTAATGTAGGAGAACTCAT+GGG | 0.593941 | 7.3:+26677503 | MS.gene033511:CDS |
| CATGGTTTCTGTGTCTGATG+GGG | 0.598267 | 7.3:-26676830 | None:intergenic |
| GTTGTGGAGGTAATCGGTGA+GGG | 0.598909 | 7.3:-26676874 | None:intergenic |
| TTCTGCATAGGTGAAGGGTA+TGG | 0.599546 | 7.3:-26676904 | None:intergenic |
| ATGTGTTCTGCATAGGTGAA+GGG | 0.618433 | 7.3:-26676909 | None:intergenic |
| GTATGGATTTGGTGTTGTGG+AGG | 0.635398 | 7.3:-26676887 | None:intergenic |
| CATACGTGGCTTACTGAAAG+GGG | 0.635482 | 7.3:+26678274 | MS.gene033511:CDS |
| TGGGCATTATCGGCTGCTAG+CGG | 0.639965 | 7.3:+26677841 | MS.gene033511:CDS |
| TTCACCTATGCAGAACACAT+TGG | 0.649247 | 7.3:+26676912 | MS.gene033511:CDS |
| TGTTGTGGAGGTAATCGGTG+AGG | 0.650161 | 7.3:-26676875 | None:intergenic |
| AATGTGTTCTGCATAGGTGA+AGG | 0.659720 | 7.3:-26676910 | None:intergenic |
| TGGATGACCGAATTATACCT+AGG | 0.659803 | 7.3:+26678242 | MS.gene033511:CDS |
| CTAGGTACAGATTCCATACG+TGG | 0.660432 | 7.3:+26678260 | MS.gene033511:CDS |
| GTAATGTAGGAGAACTCATG+GGG | 0.661705 | 7.3:+26677504 | MS.gene033511:CDS |
| TCTGTGATAAGTTAAAGGGT+GGG | 0.664345 | 7.3:+26677822 | MS.gene033511:CDS |
| ATGTAGGAGAACTCATGGGG+AGG | 0.683085 | 7.3:+26677507 | MS.gene033511:CDS |
| CACGTATGGAATCTGTACCT+AGG | 0.683828 | 7.3:-26678259 | None:intergenic |
| CCTTTGAAATGAGATTTGTG+AGG | 0.730568 | 7.3:-26676953 | None:intergenic |
| GCGGTGGAGGAAGAAGAACA+TGG | 0.740499 | 7.3:-26676760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTTCTTACATAGATT+AGG | + | chr7.3:26677965-26677984 | MS.gene033511:CDS | 15.0% |
| !! | ATAACATTAAAAGAGTCATT+AGG | + | chr7.3:26677003-26677022 | MS.gene033511:intron | 20.0% |
| !!! | AATTTTCTTGGATAATTCTT+TGG | + | chr7.3:26677397-26677416 | MS.gene033511:intron | 20.0% |
| !!! | ATTTTCTTGGATAATTCTTT+GGG | + | chr7.3:26677398-26677417 | MS.gene033511:intron | 20.0% |
| !!! | GCTCTATAATTTCATAATTT+TGG | - | chr7.3:26678141-26678160 | None:intergenic | 20.0% |
| !!! | TGATCTAAAGTTAATTTTCT+TGG | + | chr7.3:26677385-26677404 | MS.gene033511:intron | 20.0% |
| !!! | TTAATGTTATTTGAGAAAGT+GGG | - | chr7.3:26676993-26677012 | None:intergenic | 20.0% |
| !!! | TTTAATGTTATTTGAGAAAG+TGG | - | chr7.3:26676994-26677013 | None:intergenic | 20.0% |
| ! | AAAGACTTCAAATTCGTTAA+TGG | - | chr7.3:26677036-26677055 | None:intergenic | 25.0% |
| ! | AAGACTTCAAATTCGTTAAT+GGG | - | chr7.3:26677035-26677054 | None:intergenic | 25.0% |
| !! | GAGGATGTTATTGAAAATTT+TGG | + | chr7.3:26677728-26677747 | MS.gene033511:CDS | 25.0% |
| !! | TACAAATTTCTTTTCGCTAT+CGG | - | chr7.3:26678338-26678357 | None:intergenic | 25.0% |
| !! | TTTTCTTGGATAATTCTTTG+GGG | + | chr7.3:26677399-26677418 | MS.gene033511:intron | 25.0% |
| !!! | AAAAGTGAATTTTTTCAACC+AGG | + | chr7.3:26678162-26678181 | MS.gene033511:CDS | 25.0% |
| !!! | AAGTCTTTTTTGAAAGCATA+GGG | + | chr7.3:26677048-26677067 | MS.gene033511:intron | 25.0% |
| !!! | AATTTTTTCAACCAGGAAAT+GGG | + | chr7.3:26678169-26678188 | MS.gene033511:CDS | 25.0% |
| !!! | CGATTTTTTTACGATTTGAA+TGG | + | chr7.3:26677473-26677492 | MS.gene033511:intron | 25.0% |
| !!! | CTTTGTTGGTTTAAAAGATT+TGG | + | chr7.3:26677254-26677273 | MS.gene033511:intron | 25.0% |
| !!! | TGGTTTAAAAGATTTGGTTT+TGG | + | chr7.3:26677260-26677279 | MS.gene033511:intron | 25.0% |
| !!! | TTGGTAATGTTGAAGTTATT+GGG | + | chr7.3:26677279-26677298 | MS.gene033511:intron | 25.0% |
| !!! | TTTGGTAATGTTGAAGTTAT+TGG | + | chr7.3:26677278-26677297 | MS.gene033511:intron | 25.0% |
| !!! | TTTTTTACGATTTGAATGGA+TGG | + | chr7.3:26677477-26677496 | MS.gene033511:intron | 25.0% |
| AAGATTATCAAGATGGTTTG+AGG | + | chr7.3:26677900-26677919 | MS.gene033511:CDS | 30.0% | |
| AGACTTCAAATTCGTTAATG+GGG | - | chr7.3:26677034-26677053 | None:intergenic | 30.0% | |
| ATCTGTACCTAGGTATAATT+CGG | - | chr7.3:26678252-26678271 | None:intergenic | 30.0% | |
| ATGGAGAAGAGTTCTATATT+TGG | + | chr7.3:26677203-26677222 | MS.gene033511:intron | 30.0% | |
| CATAGGGATAGATTATACTT+TGG | + | chr7.3:26677064-26677083 | MS.gene033511:intron | 30.0% | |
| GAAAAGAACAGCTTATCATT+CGG | - | chr7.3:26677104-26677123 | None:intergenic | 30.0% | |
| TGGAGAAGAGTTCTATATTT+GGG | + | chr7.3:26677204-26677223 | MS.gene033511:intron | 30.0% | |
| TTCTTACATAGATTAGGCTT+TGG | + | chr7.3:26677971-26677990 | MS.gene033511:CDS | 30.0% | |
| ! | AAATCAAGCTTTAACACTTC+AGG | - | chr7.3:26677644-26677663 | None:intergenic | 30.0% |
| ! | ATGGTTCTGTGATAAGTTAA+AGG | + | chr7.3:26677817-26677836 | MS.gene033511:CDS | 30.0% |
| ! | ATTTGTTGATCACAAAGAAG+AGG | + | chr7.3:26677541-26677560 | MS.gene033511:CDS | 30.0% |
| ! | CATAAAGTAGAGTATTTCTG+TGG | + | chr7.3:26677572-26677591 | MS.gene033511:CDS | 30.0% |
| ! | CATCTTGATAATCTTTATCC+CGG | - | chr7.3:26677895-26677914 | None:intergenic | 30.0% |
| ! | CTGGATGAATTTTAAACACT+CGG | - | chr7.3:26678363-26678382 | None:intergenic | 30.0% |
| ! | TGAAGTGTTAAAGCTTGATT+TGG | + | chr7.3:26677643-26677662 | MS.gene033511:CDS | 30.0% |
| ! | TGAAGTTATTGGGATTTGTT+TGG | + | chr7.3:26677289-26677308 | MS.gene033511:intron | 30.0% |
| ! | TGGATGAATTTTAAACACTC+GGG | - | chr7.3:26678362-26678381 | None:intergenic | 30.0% |
| ! | TGGTTCTGTGATAAGTTAAA+GGG | + | chr7.3:26677818-26677837 | MS.gene033511:CDS | 30.0% |
| !! | CTTTGAAATGAGATTTGTGA+GGG | - | chr7.3:26676955-26676974 | None:intergenic | 30.0% |
| !! | GAAAATTTTGGTCATGTGTT+GGG | + | chr7.3:26677740-26677759 | MS.gene033511:CDS | 30.0% |
| !! | TGAAAATTTTGGTCATGTGT+TGG | + | chr7.3:26677739-26677758 | MS.gene033511:CDS | 30.0% |
| !!! | AATTTTGGTTCAGAATCCTT+GGG | - | chr7.3:26678126-26678145 | None:intergenic | 30.0% |
| !!! | CAAATTCAAAAGGGTGTTTT+TGG | + | chr7.3:26677344-26677363 | MS.gene033511:intron | 30.0% |
| !!! | GAAGTCTTTTTTGAAAGCAT+AGG | + | chr7.3:26677047-26677066 | MS.gene033511:intron | 30.0% |
| !!! | GAATTTTTTCAACCAGGAAA+TGG | + | chr7.3:26678168-26678187 | MS.gene033511:CDS | 30.0% |
| !!! | TAATTTTGGTTCAGAATCCT+TGG | - | chr7.3:26678127-26678146 | None:intergenic | 30.0% |
| !!! | TGCATTGACTATGAATCTTT+TGG | + | chr7.3:26678000-26678019 | MS.gene033511:CDS | 30.0% |
| !!! | TTTTCCTTTTGTTTTGAGTG+AGG | + | chr7.3:26677313-26677332 | MS.gene033511:intron | 30.0% |
| AAATGTAGATTCATGGCATG+AGG | + | chr7.3:26677436-26677455 | MS.gene033511:intron | 35.0% | |
| ACTTCCTCACTCAAAACAAA+AGG | - | chr7.3:26677320-26677339 | None:intergenic | 35.0% | |
| AGCAATGTTGCATTATCACT+TGG | + | chr7.3:26678222-26678241 | MS.gene033511:CDS | 35.0% | |
| ATCGGTGATCATACTTTGAA+TGG | - | chr7.3:26678320-26678339 | None:intergenic | 35.0% | |
| ATTCAATTCTTGAGCGTAGA+AGG | - | chr7.3:26678072-26678091 | None:intergenic | 35.0% | |
| CCTCACAAATCTCATTTCAA+AGG | + | chr7.3:26676953-26676972 | MS.gene033511:CDS | 35.0% | |
| CGGGATAAAGATTATCAAGA+TGG | + | chr7.3:26677893-26677912 | MS.gene033511:CDS | 35.0% | |
| GAAGTGGGTCAAATTCAAAA+GGG | + | chr7.3:26677335-26677354 | MS.gene033511:intron | 35.0% | |
| GAAGTTAGGTGTGTTGTATA+TGG | + | chr7.3:26677184-26677203 | MS.gene033511:intron | 35.0% | |
| GTGTTGAAGAGTTGAAATTG+AGG | + | chr7.3:26677231-26677250 | MS.gene033511:intron | 35.0% | |
| TACGATTTGAATGGATGGAA+GGG | + | chr7.3:26677482-26677501 | MS.gene033511:intron | 35.0% | |
| TCTGTGATAAGTTAAAGGGT+GGG | + | chr7.3:26677822-26677841 | MS.gene033511:CDS | 35.0% | |
| TGTGTTGGGAACAATTAGAA+TGG | + | chr7.3:26677754-26677773 | MS.gene033511:CDS | 35.0% | |
| TTACGATTTGAATGGATGGA+AGG | + | chr7.3:26677481-26677500 | MS.gene033511:intron | 35.0% | |
| TTCTGTGATAAGTTAAAGGG+TGG | + | chr7.3:26677821-26677840 | MS.gene033511:CDS | 35.0% | |
| TTGAGGGAAATGTAGATTCA+TGG | + | chr7.3:26677429-26677448 | MS.gene033511:intron | 35.0% | |
| ! | AAGTGATAATGCAACATTGC+TGG | - | chr7.3:26678223-26678242 | None:intergenic | 35.0% |
| ! | AATCTTTTGGATCGTTTGCA+CGG | + | chr7.3:26678013-26678032 | MS.gene033511:CDS | 35.0% |
| ! | AATTGCTCGAACCAATGTTT+TGG | - | chr7.3:26678391-26678410 | None:intergenic | 35.0% |
| ! | AGTTGAAATTGAGGCTTTGT+TGG | + | chr7.3:26677240-26677259 | MS.gene033511:intron | 35.0% |
| ! | CTTGTGTGCTTTGTGATTTT+GGG | + | chr7.3:26677150-26677169 | MS.gene033511:intron | 35.0% |
| ! | GTAGAGTATTTCTGTGGATT+TGG | + | chr7.3:26677578-26677597 | MS.gene033511:CDS | 35.0% |
| ! | TGATAAGCTGTTCTTTTCAG+AGG | + | chr7.3:26677106-26677125 | MS.gene033511:intron | 35.0% |
| !! | AAAGCTTGATTTGGAGAAGA+CGG | + | chr7.3:26677652-26677671 | MS.gene033511:CDS | 35.0% |
| !! | CCTTTGAAATGAGATTTGTG+AGG | - | chr7.3:26676956-26676975 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTCAGAATCCTTG+GGG | - | chr7.3:26678125-26678144 | None:intergenic | 35.0% |
| !!! | TTGTGATTTTGGGTTTCCTT+GGG | + | chr7.3:26677160-26677179 | MS.gene033511:intron | 35.0% |
| !!! | TTTGTGATTTTGGGTTTCCT+TGG | + | chr7.3:26677159-26677178 | MS.gene033511:intron | 35.0% |
| !!! | TTTGTTTTGAGTGAGGAAGT+GGG | + | chr7.3:26677320-26677339 | MS.gene033511:intron | 35.0% |
| !!! | TTTTGTTTTGAGTGAGGAAG+TGG | + | chr7.3:26677319-26677338 | MS.gene033511:intron | 35.0% |
| !!! | TTTTTGTGGTGGTGGAAAAA+TGG | - | chr7.3:26676785-26676804 | None:intergenic | 35.0% |
| AATGGATGGAAGGGTAATGT+AGG | + | chr7.3:26677491-26677510 | MS.gene033511:intron | 40.0% | |
| AATGTGTTCTGCATAGGTGA+AGG | - | chr7.3:26676913-26676932 | None:intergenic | 40.0% | |
| ACATGGTTTCTGTGTCTGAT+GGG | - | chr7.3:26676834-26676853 | None:intergenic | 40.0% | |
| ACCAAATGTGATGAGAGCTA+TGG | + | chr7.3:26677784-26677803 | MS.gene033511:CDS | 40.0% | |
| AGTTAAAGGGTGGGCATTAT+CGG | + | chr7.3:26677831-26677850 | MS.gene033511:CDS | 40.0% | |
| ATGTGTTCTGCATAGGTGAA+GGG | - | chr7.3:26676912-26676931 | None:intergenic | 40.0% | |
| ATTCTCAAAGCTCTGCATGA+TGG | + | chr7.3:26678090-26678109 | MS.gene033511:CDS | 40.0% | |
| CCAAATGTGATGAGAGCTAT+GGG | + | chr7.3:26677785-26677804 | MS.gene033511:CDS | 40.0% | |
| GAAGACGGTGATTAATGTGT+TGG | + | chr7.3:26677667-26677686 | MS.gene033511:CDS | 40.0% | |
| GGAAGTGGGTCAAATTCAAA+AGG | + | chr7.3:26677334-26677353 | MS.gene033511:intron | 40.0% | |
| GGTAATGTAGGAGAACTCAT+GGG | + | chr7.3:26677503-26677522 | MS.gene033511:CDS | 40.0% | |
| GTAATGTAGGAGAACTCATG+GGG | + | chr7.3:26677504-26677523 | MS.gene033511:CDS | 40.0% | |
| TGATGGTAAGAAAAACCCCA+AGG | + | chr7.3:26678107-26678126 | MS.gene033511:CDS | 40.0% | |
| TGGATGACCGAATTATACCT+AGG | + | chr7.3:26678242-26678261 | MS.gene033511:CDS | 40.0% | |
| TTCACCTATGCAGAACACAT+TGG | + | chr7.3:26676912-26676931 | MS.gene033511:CDS | 40.0% | |
| TTGGAGCTGTTGAAACACTT+TGG | + | chr7.3:26677686-26677705 | MS.gene033511:CDS | 40.0% | |
| TTTGAGCTTCGTGAATGACA+TGG | - | chr7.3:26676851-26676870 | None:intergenic | 40.0% | |
| ! | AGCTGTTCTTTTCAGAGGAT+AGG | + | chr7.3:26677111-26677130 | MS.gene033511:intron | 40.0% |
| ! | ATAGGTGAAGGGTATGGATT+TGG | - | chr7.3:26676901-26676920 | None:intergenic | 40.0% |
| ! | GAGTATTTCTGTGGATTTGG+TGG | + | chr7.3:26677581-26677600 | MS.gene033511:CDS | 40.0% |
| ! | GCTTGTGTGCTTTGTGATTT+TGG | + | chr7.3:26677149-26677168 | MS.gene033511:intron | 40.0% |
| ! | TCTTTGGGGAGTTATGTTGA+GGG | + | chr7.3:26677413-26677432 | MS.gene033511:intron | 40.0% |
| ! | TTCTTTGGGGAGTTATGTTG+AGG | + | chr7.3:26677412-26677431 | MS.gene033511:intron | 40.0% |
| !! | CATGAGCTCTAAAGATTTGG+AGG | + | chr7.3:26677709-26677728 | MS.gene033511:CDS | 40.0% |
| !! | TGGCATGAGCTCTAAAGATT+TGG | + | chr7.3:26677706-26677725 | MS.gene033511:CDS | 40.0% |
| !! | TTTGGTGTTGTGGAGGTAAT+CGG | - | chr7.3:26676883-26676902 | None:intergenic | 40.0% |
| !!! | GTTTGGGAAGTTGGTTTTTG+TGG | - | chr7.3:26676799-26676818 | None:intergenic | 40.0% |
| AACACACCTAACTTCTCCCA+AGG | - | chr7.3:26677179-26677198 | None:intergenic | 45.0% | |
| AAGTGATCGCAATGAAGACC+GGG | + | chr7.3:26677874-26677893 | MS.gene033511:CDS | 45.0% | |
| ATCCAGCTGCTCCAAAACAT+TGG | + | chr7.3:26678377-26678396 | MS.gene033511:CDS | 45.0% | |
| CAAGTGATCGCAATGAAGAC+CGG | + | chr7.3:26677873-26677892 | MS.gene033511:CDS | 45.0% | |
| CACGTATGGAATCTGTACCT+AGG | - | chr7.3:26678262-26678281 | None:intergenic | 45.0% | |
| CATACGTGGCTTACTGAAAG+GGG | + | chr7.3:26678274-26678293 | MS.gene033511:CDS | 45.0% | |
| CATGGTTTCTGTGTCTGATG+GGG | - | chr7.3:26676833-26676852 | None:intergenic | 45.0% | |
| CCAAAGTTGTTCCCATTTCC+TGG | - | chr7.3:26678183-26678202 | None:intergenic | 45.0% | |
| CCAGGAAATGGGAACAACTT+TGG | + | chr7.3:26678180-26678199 | MS.gene033511:CDS | 45.0% | |
| CCATACGTGGCTTACTGAAA+GGG | + | chr7.3:26678273-26678292 | MS.gene033511:CDS | 45.0% | |
| CCCATAGCTCTCATCACATT+TGG | - | chr7.3:26677788-26677807 | None:intergenic | 45.0% | |
| CTAGGTACAGATTCCATACG+TGG | + | chr7.3:26678260-26678279 | MS.gene033511:CDS | 45.0% | |
| GACATGGTTTCTGTGTCTGA+TGG | - | chr7.3:26676835-26676854 | None:intergenic | 45.0% | |
| GAGCTATGGGTTTGCAAGAA+TGG | + | chr7.3:26677798-26677817 | MS.gene033511:CDS | 45.0% | |
| GGGTAATGTAGGAGAACTCA+TGG | + | chr7.3:26677502-26677521 | MS.gene033511:intron | 45.0% | |
| GTTGCCAATGTGTTCTGCAT+AGG | - | chr7.3:26676919-26676938 | None:intergenic | 45.0% | |
| TCCATACGTGGCTTACTGAA+AGG | + | chr7.3:26678272-26678291 | MS.gene033511:CDS | 45.0% | |
| TTCTGCATAGGTGAAGGGTA+TGG | - | chr7.3:26676907-26676926 | None:intergenic | 45.0% | |
| TTTGGAGAGGTTTGGGAAGT+TGG | - | chr7.3:26676808-26676827 | None:intergenic | 45.0% | |
| ! | TCTGTGTCTGATGGGGATTT+TGG | - | chr7.3:26676826-26676845 | None:intergenic | 45.0% |
| !! | AGGGTATGGATTTGGTGTTG+TGG | - | chr7.3:26676893-26676912 | None:intergenic | 45.0% |
| !! | ATGGGGATTTTGGAGAGGTT+TGG | - | chr7.3:26676816-26676835 | None:intergenic | 45.0% |
| !! | CTGTGGATTTGGTGGAAAGA+AGG | + | chr7.3:26677589-26677608 | MS.gene033511:CDS | 45.0% |
| !! | GTATGGATTTGGTGTTGTGG+AGG | - | chr7.3:26676890-26676909 | None:intergenic | 45.0% |
| !! | TGGATTTGGTGGAAAGAAGG+AGG | + | chr7.3:26677592-26677611 | MS.gene033511:CDS | 45.0% |
| !! | TGGGGATTTTGGAGAGGTTT+GGG | - | chr7.3:26676815-26676834 | None:intergenic | 45.0% |
| !! | TTGTGGTGGTGGAAAAATGG+CGG | - | chr7.3:26676782-26676801 | None:intergenic | 45.0% |
| !!! | AACCAATGTTTTGGAGCAGC+TGG | - | chr7.3:26678382-26678401 | None:intergenic | 45.0% |
| !!! | GAAGTTGGTTTTTGTGGTGG+TGG | - | chr7.3:26676793-26676812 | None:intergenic | 45.0% |
| !!! | TGGGAAGTTGGTTTTTGTGG+TGG | - | chr7.3:26676796-26676815 | None:intergenic | 45.0% |
| ATGTAGGAGAACTCATGGGG+AGG | + | chr7.3:26677507-26677526 | MS.gene033511:CDS | 50.0% | |
| CCCTTTCAGTAAGCCACGTA+TGG | - | chr7.3:26678276-26678295 | None:intergenic | 50.0% | |
| GGGAACAACTTTGGACTGTC+TGG | + | chr7.3:26678189-26678208 | MS.gene033511:CDS | 50.0% | |
| GGGTTTCCTTGGGAGAAGTT+AGG | + | chr7.3:26677170-26677189 | MS.gene033511:intron | 50.0% | |
| GTTGTGGAGGTAATCGGTGA+GGG | - | chr7.3:26676877-26676896 | None:intergenic | 50.0% | |
| TGGTGGAAAGAAGGAGGAAG+TGG | + | chr7.3:26677598-26677617 | MS.gene033511:CDS | 50.0% | |
| TGTTGTGGAGGTAATCGGTG+AGG | - | chr7.3:26676878-26676897 | None:intergenic | 50.0% | |
| !! | GTCTGATGGGGATTTTGGAG+AGG | - | chr7.3:26676821-26676840 | None:intergenic | 50.0% |
| CGGCACAAGCAGTGAGTTAC+AGG | + | chr7.3:26678033-26678052 | MS.gene033511:CDS | 55.0% | |
| GCGGTGGAGGAAGAAGAACA+TGG | - | chr7.3:26676763-26676782 | None:intergenic | 55.0% | |
| TGGTGGAAAAATGGCGGTGG+AGG | - | chr7.3:26676776-26676795 | None:intergenic | 55.0% | |
| ! | TGGGCATTATCGGCTGCTAG+CGG | + | chr7.3:26677841-26677860 | MS.gene033511:CDS | 55.0% |
| !! | TGGTGGTGGAAAAATGGCGG+TGG | - | chr7.3:26676779-26676798 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 26676744 | 26678435 | 26676744 | ID=MS.gene033511 |
| chr7.3 | mRNA | 26676744 | 26678435 | 26676744 | ID=MS.gene033511.t1;Parent=MS.gene033511 |
| chr7.3 | exon | 26676744 | 26676974 | 26676744 | ID=MS.gene033511.t1.exon1;Parent=MS.gene033511.t1 |
| chr7.3 | CDS | 26676744 | 26676974 | 26676744 | ID=cds.MS.gene033511.t1;Parent=MS.gene033511.t1 |
| chr7.3 | exon | 26677503 | 26678435 | 26677503 | ID=MS.gene033511.t1.exon2;Parent=MS.gene033511.t1 |
| chr7.3 | CDS | 26677503 | 26678435 | 26677503 | ID=cds.MS.gene033511.t1;Parent=MS.gene033511.t1 |
| Gene Sequence |
| Protein sequence |
